deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Description: |-
count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains examples to test the package
Homepage: https://www.genome.umd.edu/jellyfish.html
Installed-Size: '60'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Multi-Arch: foreign
Package: jellyfish-examples
Priority: optional
Recommends: jellyfish
Section: science
Source: jellyfish
Version: 2.3.1-3
srcpkg_name: jellyfish
srcpkg_version: 2.3.1-3