Artifact bitseq_0.7.5+dfsg-6_amd64-2024-09-26T07:14:17Z

Metadata
bd_uninstallable: null
filename: bitseq_0.7.5+dfsg-6_amd64-2024-09-26T07:14:17Z.build
source: bitseq
version: 0.7.5+dfsg-6

File

bitseq_0.7.5+dfsg-6_amd64-2024-09-26T07:14:17Z.build
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sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-amd64-hades-06.freexian.com

+==============================================================================+
| bitseq 0.7.5+dfsg-6 (amd64)                  Thu, 26 Sep 2024 07:14:17 +0000 |
+==============================================================================+

Package: bitseq
Version: 0.7.5+dfsg-6
Source Version: 0.7.5+dfsg-6
Distribution: sid
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary

I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/807024/system.tar.xz to /tmp/tmp.sbuild.EbwoSurVw2...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


rm -f /etc/resolv.conf
----------------------


I: Finished running 'rm -f /etc/resolv.conf'.

Finished processing commands.
--------------------------------------------------------------------------------
Copying /tmp/debusine-fetch-exec-upload-1slqjr7j/python3-numpy-dbgsym_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-1slqjr7j/python3-numpy-dev_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-1slqjr7j/python3-numpy_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-1slqjr7j/python-numpy-doc_2.1.1+ds-3_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/bitseq-ynwS2i/resolver-IwbryH' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ InRelease
Ign:1 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ InRelease
Get:2 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ Release [606 B]
Get:2 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ Release [606 B]
Get:3 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ Release.gpg
Ign:3 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ Release.gpg
Get:4 http://deb.debian.org/debian sid InRelease [202 kB]
Get:5 file:/build/bitseq-ynwS2i/resolver-WUPwP9/apt_archive ./ Packages [4543 B]
Get:6 http://deb.debian.org/debian sid/main amd64 Packages [9964 kB]
Fetched 10.2 MB in 1s (12.0 MB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  libc-bin libc6
2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 3433 kB of archives.
After this operation, 406 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.40-3 [2807 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.40-3 [627 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 3433 kB in 0s (41.8 MB/s)
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(Reading database ... 16328 files and directories currently installed.)
Preparing to unpack .../libc6_2.40-3_amd64.deb ...
Unpacking libc6:amd64 (2.40-3) over (2.40-2) ...
Setting up libc6:amd64 (2.40-3) ...
(Reading database ... 
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(Reading database ... 16328 files and directories currently installed.)
Preparing to unpack .../libc-bin_2.40-3_amd64.deb ...
Unpacking libc-bin (2.40-3) over (2.40-2) ...
Setting up libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/tmp/debusine-fetch-exec-upload-1slqjr7j/bitseq_0.7.5+dfsg-6.dsc exists in /tmp/debusine-fetch-exec-upload-1slqjr7j; copying to chroot
I: NOTICE: Log filtering will replace 'build/bitseq-ynwS2i/bitseq-0.7.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bitseq-ynwS2i' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libboost-dev, help2man, python3, python3-numpy, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libboost-dev, help2man, python3, python3-numpy, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [707 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [732 B]
Fetched 2048 B in 0s (0 B/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ Release [606 B]
Get:3 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev build-essential cpp cpp-14
  cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper dh-autoreconf
  dh-strip-nondeterminism dumb-init dwz fakeroot g++ g++-14
  g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
  gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu help2man libasan8 libatomic1
  libbam-dev libblas3 libboost-dev libboost1.83-dev libc-dev-bin libc6-dev
  libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1 libfakeroot
  libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgssapi-krb5-2
  libhwasan0 libisl23 libitm1 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblapack3 liblocale-gettext-perl liblsan0 libmpc3 libmpfr6
  libncursesw6 libnsl2 libpkgconf3 libpython3-stdlib libpython3.12-minimal
  libpython3.12-stdlib libquadmath0 libstdc++-14-dev libtirpc-common
  libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
  pkgconf pkgconf-bin po-debconf python3 python3-autocommand python3-inflect
  python3-jaraco.context python3-jaraco.functools python3-minimal
  python3-more-itertools python3-numpy python3-numpy-dev python3-pkg-resources
  python3-typeguard python3-typing-extensions python3.12 python3.12-minimal
  rpcsvc-proto zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
  cpp-14-doc dh-make g++-multilib g++-14-multilib gcc-14-doc gcc-multilib
  manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu
  libboost-doc libboost1.83-doc libboost-atomic1.83-dev
  libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
  libboost-contract1.83-dev libboost-coroutine1.83-dev
  libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
  libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
  libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
  libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
  libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
  libboost-numpy1.83-dev libboost-program-options1.83-dev
  libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
  libboost-serialization1.83-dev libboost-stacktrace1.83-dev
  libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
  libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
  libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
  libc-devtools glibc-doc krb5-doc krb5-user libstdc++-14-doc libtool-doc
  gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc
  python3-tk python3-venv gfortran python-numpy-doc python3-dev python3-pytest
  python3-setuptools python3.12-venv python3.12-doc binfmt-support
Recommended packages:
  manpages manpages-dev libarchive-cpio-perl krb5-locales libgpm2 libltdl-dev
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev build-essential cpp cpp-14
  cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper dh-autoreconf
  dh-strip-nondeterminism dumb-init dwz fakeroot g++ g++-14
  g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
  gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu help2man libasan8 libatomic1
  libbam-dev libblas3 libboost-dev libboost1.83-dev libc-dev-bin libc6-dev
  libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1 libfakeroot
  libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgssapi-krb5-2
  libhwasan0 libisl23 libitm1 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblapack3 liblocale-gettext-perl liblsan0 libmpc3 libmpfr6
  libncursesw6 libnsl2 libpkgconf3 libpython3-stdlib libpython3.12-minimal
  libpython3.12-stdlib libquadmath0 libstdc++-14-dev libtirpc-common
  libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
  pkgconf pkgconf-bin po-debconf python3 python3-autocommand python3-inflect
  python3-jaraco.context python3-jaraco.functools python3-minimal
  python3-more-itertools python3-numpy python3-numpy-dev python3-pkg-resources
  python3-typeguard python3-typing-extensions python3.12 python3.12-minimal
  rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded.
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Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ python3-numpy-dev 1:2.1.1+ds-3 [135 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB]
Get:5 file:/<<BUILDDIR>>/resolver-WUPwP9/apt_archive ./ python3-numpy 1:2.1.1+ds-3 [5060 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.3-1 [105 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B]
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Get:15 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.6-1 [669 kB]
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Get:31 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB]
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Get:36 http://deb.debian.org/debian sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-5 [11.1 MB]
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Get:40 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 14.2.0-5 [42.9 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-5 [25.9 kB]
Get:42 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-5 [9320 B]
Get:43 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-5 [2727 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-5 [1205 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-5 [2460 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-5 [1075 kB]
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Get:48 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-5 [145 kB]
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Get:54 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-5 [2366 kB]
Get:55 http://deb.debian.org/debian sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-5 [12.1 MB]
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Get:58 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:14.1.0-2 [1344 B]
Get:59 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.10 [4516 B]
Get:60 http://deb.debian.org/debian sid/main amd64 libdebhelper-perl all 13.20 [89.7 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libtool all 2.4.7-7 [517 kB]
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Get:63 http://deb.debian.org/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
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Get:65 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.191-2 [188 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://deb.debian.org/debian sid/main amd64 debhelper all 13.20 [915 kB]
Get:69 http://deb.debian.org/debian sid/main amd64 dumb-init amd64 1.2.5-3 [13.4 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 libfakeroot amd64 1.36-1 [29.1 kB]
Get:71 http://deb.debian.org/debian sid/main amd64 fakeroot amd64 1.36-1 [75.1 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 help2man amd64 1.49.3 [198 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB]
Get:77 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get:78 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-5 [837 kB]
Get:79 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB]
Get:80 http://deb.debian.org/debian sid/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB]
Get:81 http://deb.debian.org/debian sid/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB]
Get:82 http://deb.debian.org/debian sid/main amd64 pkgconf amd64 1.8.1-3 [26.1 kB]
Get:83 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:84 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.4.0-1 [63.7 kB]
Get:85 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:89 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.0.2-1 [11.7 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB]
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+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) amd64 (x86_64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-5 gcc-14_14.2.0-5 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.11-1
Package versions: apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-common_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.2.0-5 cpp-14-x86-64-linux-gnu_14.2.0-5 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-14_14.2.0-5 g++-14-x86-64-linux-gnu_14.2.0-5 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-14_14.2.0-5 gcc-14-base_14.2.0-5 gcc-14-x86-64-linux-gnu_14.2.0-5 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 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libiterator-util-perl_0.02+ds1-2 libitm1_14.2.0-5 libjansson4_2.14-2+b2 libjson-maybexs-perl_1.004008-1 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 liblapack3_3.12.0-3 liblist-compare-perl_0.55-2 liblist-someutils-perl_0.59-1 liblist-utilsby-perl_0.12-2 liblocale-gettext-perl_1.07-7 liblsan0_14.2.0-5 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz1_1.15~pre1-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 liblzo2-2_2.10-3 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmarkdown2_2.2.7-2+b1 libmd0_1.1.0-2 libmldbm-perl_2.05-4 libmodule-implementation-perl_0.09-2 libmodule-runtime-perl_0.016-2 libmoo-perl_2.005005-1 libmoox-aliases-perl_0.001006-2 libmount1_2.40.2-8 libmouse-perl_2.5.11-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnamespace-clean-perl_0.27-2 libncursesw6_6.5-2 libnet-domain-tld-perl_1.75-4 libnet-http-perl_6.23-1 libnet-ipv6addr-perl_1.02-1 libnet-netmask-perl_2.0002-2 libnet-ssleay-perl_1.94-1+b1 libnetaddr-ip-perl_4.079+dfsg-2+b3 libnettle8t64_3.10-1 libnsl2_1.3.0-3+b2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.5-2 libpackage-stash-perl_0.40-1 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libparams-classify-perl_0.015-2+b3 libparams-util-perl_1.102-3 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperlio-gzip-perl_0.20-1+b3 libperlio-utf8-strict-perl_0.010-1+b2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-3 libproc-processtable-perl_0.636-1+b2 libpython3-stdlib_3.12.6-1 libpython3.12-minimal_3.12.6-1 libpython3.12-stdlib_3.12.6-1 libquadmath0_14.2.0-5 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librole-tiny-perl_2.002004-1 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b2 libsereal-encoder-perl_5.004+ds-1+b2 libsframe1_2.43.1-5 libsmartcols1_2.40.2-8 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 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libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-4 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg-3+b1 libxs-parse-keyword-perl_0.46-1 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-1 libzstd1_1.5.6+dfsg-1 lintian_2.118.2 linux-libc-dev_6.10.11-1 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-8 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 pkgconf_1.8.1-3 pkgconf-bin_1.8.1-3 plzip_1.11-2 po-debconf_1.0.21+nmu1 python3_3.12.6-1 python3-autocommand_2.2.2-3 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.0.2-1 python3-minimal_3.12.6-1 python3-more-itertools_10.4.0-1 python3-numpy_1:2.1.1+ds-3 python3-numpy-dev_1:2.1.1+ds-3 python3-pkg-resources_74.1.2-2 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3.12_3.12.6-1 python3.12-minimal_3.12.6-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024a-4 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: bitseq
Binary: bitseq
Architecture: any
Version: 0.7.5+dfsg-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/BitSeq/BitSeq
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/bitseq
Vcs-Git: https://salsa.debian.org/med-team/bitseq.git
Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbam-dev, libboost-dev, help2man, python3, python3-numpy
Package-List:
 bitseq deb science optional arch=any
Checksums-Sha1:
 a93fba144039e99acc006846921cb02b61febb47 79132 bitseq_0.7.5+dfsg.orig.tar.xz
 2299b7e009150f9ef78b6b4fc86a2c81b3137ce9 7760 bitseq_0.7.5+dfsg-6.debian.tar.xz
Checksums-Sha256:
 bd48fd14f9687aa4813d5e4f0a8b206616dc7fd9b1060969803f391c9534c04c 79132 bitseq_0.7.5+dfsg.orig.tar.xz
 8850552c11a44fc0242f1c9196de5f127d8e9427bb13a5d4416da97d06cdc9ee 7760 bitseq_0.7.5+dfsg-6.debian.tar.xz
Files:
 dbb476c736ab9e1384d55a41dd267336 79132 bitseq_0.7.5+dfsg.orig.tar.xz
 987a1943cef4326c0d63da7f82412fe8 7760 bitseq_0.7.5+dfsg-6.debian.tar.xz

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gpgv: Signature made Thu Sep  2 04:58:35 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./bitseq_0.7.5+dfsg-6.dsc: no acceptable signature found
dpkg-source: info: extracting bitseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bitseq_0.7.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking bitseq_0.7.5+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying link_against_system_samtools.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying fix_clean_target.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying fix_build_options.patch
dpkg-source: info: applying 2to3.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package bitseq
dpkg-buildpackage: info: source version 0.7.5+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   dh_auto_clean
	make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o convertSamples estimateDE estimateExpression estimateHyperPar estimateVBExpression extractSamples getFoldChange getGeneExpression getPPLR getVariance getWithinGeneExpression parseAlignment transposeLargeFile
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   dh_auto_build
	make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -ffunction-sections -fdata-sections -c ArgumentParser.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o common.o common.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -ffunction-sections -fdata-sections -c FileHeader.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -ffunction-sections -fdata-sections -c misc.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -ffunction-sections -fdata-sections -c MyTimer.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o TranscriptInfo.o TranscriptInfo.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -ffunction-sections -fdata-sections -c PosteriorSamples.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -c CollapsedSampler.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o GibbsParameters.o GibbsParameters.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -c GibbsSampler.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -c Sampler.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o TagAlignments.o TagAlignments.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o transposeFiles.o transposeFiles.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o lowess.o lowess.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o TranscriptExpression.o TranscriptExpression.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -fopenmp -DSUPPORT_OPENMP -c SimpleSparse.cpp
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -fopenmp -DSUPPORT_OPENMP -c VariationalBayes.cpp 
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections extractSamples.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o extractSamples
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getFoldChange.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getFoldChange
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getGeneExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o TranscriptInfo.o -o getGeneExpression
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getPPLR.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getPPLR
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getVariance.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getVariance
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getWithinGeneExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o TranscriptInfo.o -o getWithinGeneExpression
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -fopenmp -DSUPPORT_OPENMP -c ReadDistribution.cpp
ReadDistribution.cpp: In member function ‘bool ReadDistribution::observed(ns_rD::fragmentP)’:
ReadDistribution.cpp:265:9: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses]
  265 |        (! frag->second->core.flag & BAM_FREVERSE))){
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2  -c -o TranscriptSequence.o TranscriptSequence.cpp
ReadDistribution.cpp: In member function ‘bool ReadDistribution::getP(ns_rD::fragmentP, double&, double&)’:
ReadDistribution.cpp:687:14: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses]
  687 |             (! frag->second->core.flag & BAM_FREVERSE))){
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections transposeLargeFile.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o transposeFiles.o -o transposeLargeFile
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections convertSamples.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o TranscriptInfo.o -o convertSamples
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateDE.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o estimateDE
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -fopenmp -DSUPPORT_OPENMP -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o CollapsedSampler.o GibbsParameters.o GibbsSampler.o Sampler.o TagAlignments.o TranscriptInfo.o transposeFiles.o -o estimateExpression
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateHyperPar.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o lowess.o PosteriorSamples.o TranscriptExpression.o -o estimateHyperPar
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -I . -fopenmp -DSUPPORT_OPENMP -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateVBExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o SimpleSparse.o TagAlignments.o TranscriptInfo.o transposeFiles.o VariationalBayes.o -o estimateVBExpression
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DBS_VERSION=\"0.7.5\" -Wall  -O2 -pipe -fopenmp -DSUPPORT_OPENMP -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections -pthread parseAlignment.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o ReadDistribution.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -lbam -lz -o parseAlignment
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test
   create-stamp debian/debhelper-build-stamp
   dh_prep
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find -maxdepth 1 -type f -perm /111 -exec dh_install '{}' /usr/bin ';'
# Provide scripts with extensions in Debian Med dir and without extension in /usr/bin
mkdir -p /<<PKGBUILDDIR>>/debian/bitseq//usr/lib/debian-med/bin
rm -f debian/bitseq/usr/bin/releaseDo.sh # internal BitSeq file, not intended for users
mv debian/bitseq/usr/bin/*.py debian/bitseq/usr/bin/*.sh /<<PKGBUILDDIR>>/debian/bitseq//usr/lib/debian-med/bin
# parseAlignment.py suggests itself not to be used so do not expose this
for script in /<<PKGBUILDDIR>>/debian/bitseq//usr/lib/debian-med/bin/* ; do \
    bscript=`basename ${script}` ; \
    if [ "${bscript}" = "parseAlignment.py" ] ; then continue ; fi ; \
    ln -s  /usr/lib/debian-med/bin/${bscript} /<<PKGBUILDDIR>>/debian/bitseq/usr/bin//`echo ${bscript} | sed -e 's/\.py$//' -e 's/\.sh$//'` ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs
   dh_installchangelogs
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# try to create man pages whereever possible
mkdir -p /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1/
help2man --no-info --name='convert or normalize MCMC expression samples' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//convertSamples > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//convertSamples.1
help2man --no-info --name='this bitseq module estimates differential expression from data sets' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//estimateDE > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//estimateDE.1
help2man --no-info --name='estimate expression given precomputed probabilities of (observed) reads'' alignments' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//estimateExpression > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//estimateExpression.1
help2man --no-info --name='estimate expression dependent hyperparameters for bitseq' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//estimateHyperPar > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//estimateHyperPar.1
help2man --no-info --name='estimate expression given precomputed probabilities of (observed) reads'' alignments' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//estimateVBExpression > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//estimateVBExpression.1
help2man --no-info --name='extract MCMC samples of selected transcripts' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//extractSamples > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//extractSamples.1
help2man --no-info --name='computes log_2 Fold Change from MCMC expression samples' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//getFoldChange > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//getFoldChange.1
help2man --no-info --name='compute expression of whole genes' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//getGeneExpression > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//getGeneExpression.1
help2man --no-info --name='compute PPLR from MCMC expression samples' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//getPPLR > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//getPPLR.1
help2man --no-info --name='estimates variance of MCMC samples' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//getVariance > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//getVariance.1
help2man --no-info --name='compute relative expression of transcripts within genes' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//getWithinGeneExpression > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//getWithinGeneExpression.1
help2man --no-info --name='pre\-compute probabilities of (observed) reads'' alignments' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//parseAlignment > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//parseAlignment.1
help2man --no-info --name='helper for bitseq to transpose files lines and columns' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq/usr/bin//transposeLargeFile > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//transposeLargeFile.1
help2man --no-info --name='extracts information about transcripts from reference Fasta file' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq//usr/lib/debian-med/bin/extractTranscriptInfo.py > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//extractTranscriptInfo.1
help2man --no-info --name='generate read counts for each input file' \
	--version-string="0.7.5+dfsg" --no-discard-stderr \
	/<<PKGBUILDDIR>>/debian/bitseq//usr/lib/debian-med/bin/getCounts.py > /<<PKGBUILDDIR>>/debian/bitseq/usr/share/man/man1//getCounts.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'bitseq-dbgsym' in '../bitseq-dbgsym_0.7.5+dfsg-6_amd64.deb'.
dpkg-deb: building package 'bitseq' in '../bitseq_0.7.5+dfsg-6_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../bitseq_0.7.5+dfsg-6_amd64.buildinfo
 dpkg-genchanges --build=binary -O../bitseq_0.7.5+dfsg-6_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-09-26T07:15:21Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


bitseq_0.7.5+dfsg-6_amd64.changes:
----------------------------------

Format: 1.8
Date: Thu, 02 Sep 2021 06:56:19 +0200
Source: bitseq
Binary: bitseq bitseq-dbgsym
Architecture: amd64
Version: 0.7.5+dfsg-6
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 bitseq     - Bayesian Inference of Transcripts from Sequencing Data
Changes:
 bitseq (0.7.5+dfsg-6) unstable; urgency=medium
 .
   * Fix watchfile to detect new versions on github (routine-update)
   * Standards-Version: 4.6.0 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
Checksums-Sha1:
 dae8cef81a2e1c207919a877a8d3a85a9d6ef2f4 9912924 bitseq-dbgsym_0.7.5+dfsg-6_amd64.deb
 b6e5ad9e23352970b1fe5a13eb14391d934adca5 6194 bitseq_0.7.5+dfsg-6_amd64.buildinfo
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Checksums-Sha256:
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 26910885b2676a0cec9a556fbb44c1a42f7580113fea76db6baf1f8167a6f71d 6194 bitseq_0.7.5+dfsg-6_amd64.buildinfo
 1a297190bd97de0bb5c4450440ced3fa286304ca0e7a8052d35eaf8c601ad6c7 360988 bitseq_0.7.5+dfsg-6_amd64.deb
Files:
 77edaa31d7e2a40d09643b28f60543b7 9912924 debug optional bitseq-dbgsym_0.7.5+dfsg-6_amd64.deb
 ad952ddd2e4b50b4c18f207cc1612a5b 6194 science optional bitseq_0.7.5+dfsg-6_amd64.buildinfo
 bbbc48c388a8fc55fd825b89bd022e1a 360988 science optional bitseq_0.7.5+dfsg-6_amd64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: bitseq
Binary: bitseq bitseq-dbgsym
Architecture: amd64
Version: 0.7.5+dfsg-6
Checksums-Md5:
 77edaa31d7e2a40d09643b28f60543b7 9912924 bitseq-dbgsym_0.7.5+dfsg-6_amd64.deb
 bbbc48c388a8fc55fd825b89bd022e1a 360988 bitseq_0.7.5+dfsg-6_amd64.deb
Checksums-Sha1:
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 69d7d76e14fbfce4091377af92c207e1f529f838 360988 bitseq_0.7.5+dfsg-6_amd64.deb
Checksums-Sha256:
 f5bc15ec741bd093d59a68bc1753ceb902c015fb8391a1f9063b600b1e87249b 9912924 bitseq-dbgsym_0.7.5+dfsg-6_amd64.deb
 1a297190bd97de0bb5c4450440ced3fa286304ca0e7a8052d35eaf8c601ad6c7 360988 bitseq_0.7.5+dfsg-6_amd64.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Thu, 26 Sep 2024 07:15:20 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-2),
 autotools-dev (= 20220109.1),
 base-files (= 13.5),
 base-passwd (= 3.6.4),
 bash (= 5.2.32-1+b1),
 binutils (= 2.43.1-5),
 binutils-common (= 2.43.1-5),
 binutils-x86-64-linux-gnu (= 2.43.1-5),
 bsdextrautils (= 2.40.2-8),
 bsdutils (= 1:2.40.2-8),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-6),
 coreutils (= 9.4-3.1),
 cpp (= 4:14.1.0-2),
 cpp-14 (= 14.2.0-5),
 cpp-14-x86-64-linux-gnu (= 14.2.0-5),
 cpp-x86-64-linux-gnu (= 4:14.1.0-2),
 dash (= 0.5.12-9),
 debconf (= 1.5.87),
 debhelper (= 13.20),
 debianutils (= 5.20),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.11),
 dpkg-dev (= 1.22.11),
 dwz (= 0.15-1+b1),
 file (= 1:5.45-3),
 findutils (= 4.10.0-3),
 g++ (= 4:14.1.0-2),
 g++-14 (= 14.2.0-5),
 g++-14-x86-64-linux-gnu (= 14.2.0-5),
 g++-x86-64-linux-gnu (= 4:14.1.0-2),
 gcc (= 4:14.1.0-2),
 gcc-14 (= 14.2.0-5),
 gcc-14-base (= 14.2.0-5),
 gcc-14-x86-64-linux-gnu (= 14.2.0-5),
 gcc-x86-64-linux-gnu (= 4:14.1.0-2),
 gettext (= 0.22.5-2),
 gettext-base (= 0.22.5-2),
 grep (= 3.11-4),
 groff-base (= 1.23.0-5),
 gzip (= 1.12-1.1),
 help2man (= 1.49.3),
 hostname (= 3.23+nmu2),
 init-system-helpers (= 1.67),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-5),
 libatomic1 (= 14.2.0-5),
 libattr1 (= 1:2.5.2-1),
 libaudit-common (= 1:4.0.1-1),
 libaudit1 (= 1:4.0.1-1),
 libbam-dev (= 0.1.19+dfsg-6),
 libbinutils (= 2.43.1-5),
 libblas3 (= 3.12.0-3),
 libblkid1 (= 2.40.2-8),
 libboost-dev (= 1.83.0.2+b2),
 libboost1.83-dev (= 1.83.0-3.2),
 libbz2-1.0 (= 1.0.8-6),
 libc-bin (= 2.40-3),
 libc-dev-bin (= 2.40-3),
 libc6 (= 2.40-3),
 libc6-dev (= 2.40-3),
 libcap-ng0 (= 0.8.5-2),
 libcap2 (= 1:2.66-5),
 libcc1-0 (= 14.2.0-5),
 libcom-err2 (= 1.47.1-1),
 libcrypt-dev (= 1:4.4.36-5),
 libcrypt1 (= 1:4.4.36-5),
 libctf-nobfd0 (= 2.43.1-5),
 libctf0 (= 2.43.1-5),
 libdb5.3t64 (= 5.3.28+dfsg2-7),
 libdebconfclient0 (= 0.272),
 libdebhelper-perl (= 13.20),
 libdpkg-perl (= 1.22.11),
 libelf1t64 (= 0.191-2),
 libexpat1 (= 2.6.3-1),
 libffi8 (= 3.4.6-1),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libgcc-14-dev (= 14.2.0-5),
 libgcc-s1 (= 14.2.0-5),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgfortran5 (= 14.2.0-5),
 libgmp10 (= 2:6.3.0+dfsg-2+b1),
 libgomp1 (= 14.2.0-5),
 libgprofng0 (= 2.43.1-5),
 libgssapi-krb5-2 (= 1.21.3-3),
 libhwasan0 (= 14.2.0-5),
 libicu72 (= 72.1-5),
 libisl23 (= 0.27-1),
 libitm1 (= 14.2.0-5),
 libjansson4 (= 2.14-2+b2),
 libk5crypto3 (= 1.21.3-3),
 libkeyutils1 (= 1.6.3-3),
 libkrb5-3 (= 1.21.3-3),
 libkrb5support0 (= 1.21.3-3),
 liblapack3 (= 3.12.0-3),
 liblocale-gettext-perl (= 1.07-7),
 liblsan0 (= 14.2.0-5),
 liblzma5 (= 5.6.2-2),
 libmagic-mgc (= 1:5.45-3),
 libmagic1t64 (= 1:5.45-3),
 libmd0 (= 1.1.0-2),
 libmount1 (= 2.40.2-8),
 libmpc3 (= 1.3.1-1+b2),
 libmpfr6 (= 4.2.1-1+b1),
 libncursesw6 (= 6.5-2),
 libnsl2 (= 1.3.0-3+b2),
 libpam-modules (= 1.5.3-7),
 libpam-modules-bin (= 1.5.3-7),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7),
 libpcre2-8-0 (= 10.42-4+b1),
 libperl5.38t64 (= 5.38.2-5),
 libpipeline1 (= 1.5.8-1),
 libpkgconf3 (= 1.8.1-3),
 libpython3-stdlib (= 3.12.6-1),
 libpython3.12-minimal (= 3.12.6-1),
 libpython3.12-stdlib (= 3.12.6-1),
 libquadmath0 (= 14.2.0-5),
 libreadline8t64 (= 8.2-5),
 libseccomp2 (= 2.5.5-1+b1),
 libselinux1 (= 3.7-3),
 libsframe1 (= 2.43.1-5),
 libsmartcols1 (= 2.40.2-8),
 libsqlite3-0 (= 3.46.1-1),
 libssl3t64 (= 3.3.2-1),
 libstdc++-14-dev (= 14.2.0-5),
 libstdc++6 (= 14.2.0-5),
 libsystemd0 (= 256.6-1),
 libtinfo6 (= 6.5-2),
 libtirpc-common (= 1.3.4+ds-1.3),
 libtirpc3t64 (= 1.3.4+ds-1.3),
 libtool (= 2.4.7-7),
 libtsan2 (= 14.2.0-5),
 libubsan1 (= 14.2.0-5),
 libuchardet0 (= 0.0.8-1+b1),
 libudev1 (= 256.6-1),
 libunistring5 (= 1.2-1),
 libuuid1 (= 2.40.2-8),
 libxml2 (= 2.12.7+dfsg-3+b1),
 libzstd1 (= 1.5.6+dfsg-1),
 linux-libc-dev (= 6.10.11-1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20240905-1),
 media-types (= 10.1.0),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2),
 netbase (= 6.4),
 openssl-provider-legacy (= 3.3.2-1),
 patch (= 2.7.6-7),
 perl (= 5.38.2-5),
 perl-base (= 5.38.2-5),
 perl-modules-5.38 (= 5.38.2-5),
 pkgconf (= 1.8.1-3),
 pkgconf-bin (= 1.8.1-3),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.12.6-1),
 python3-autocommand (= 2.2.2-3),
 python3-inflect (= 7.3.1-2),
 python3-jaraco.context (= 6.0.0-1),
 python3-jaraco.functools (= 4.0.2-1),
 python3-minimal (= 3.12.6-1),
 python3-more-itertools (= 10.4.0-1),
 python3-numpy (= 1:2.1.1+ds-3),
 python3-numpy-dev (= 1:2.1.1+ds-3),
 python3-pkg-resources (= 74.1.2-2),
 python3-typeguard (= 4.3.0-1),
 python3-typing-extensions (= 4.12.2-2),
 python3.12 (= 3.12.6-1),
 python3.12-minimal (= 3.12.6-1),
 readline-common (= 8.2-5),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.10-2),
 tar (= 1.35+dfsg-3),
 tzdata (= 2024a-4),
 util-linux (= 2.40.2-8),
 xz-utils (= 5.6.2-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1630558579"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


bitseq-dbgsym_0.7.5+dfsg-6_amd64.deb
------------------------------------

 new Debian package, version 2.0.
 size 9912924 bytes: control archive=1192 bytes.
     870 bytes,    12 lines      control
    1461 bytes,    14 lines      md5sums
 Package: bitseq-dbgsym
 Source: bitseq
 Version: 0.7.5+dfsg-6
 Auto-Built-Package: debug-symbols
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 10179
 Depends: bitseq (= 0.7.5+dfsg-6)
 Section: debug
 Priority: optional
 Description: debug symbols for bitseq
 Build-Ids: 351fc171cbc1ee77eacfd63d2a8bb28b22b2a135 48e74324e4a2ca07cd74bff7a2ea93026d848c83 4b47e519e800c129a9ead7420f027ad9555e26b1 6bd8b89e3a32459f95863efaffb6d43fdb67b1e5 6c8fdd874dd04e14453f4932b5c76abb58aeff15 92aa11a1ddeb3e8a637eed289f855a5302f6dd3e aa144ef197dc7dd0224ee915cabdbb426dc34de0 b6fade03ce11107c0c80704bf04649a0b6dd7231 e11e951d015f6b3c03cc324d082228857e63cb72 e52eb6c985d1be28352df18d2cb0d88df7998888 f40650befa7c814d1f018e01d5bec4b4f4df149f f5aeb00e8af04fd978019a468ca2fbf70da41297 f7e7381a6a26ae13e749bd869307622a8bad1e5b

drwxr-xr-x root/root         0 2021-09-02 04:56 ./
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/debug/.dwz/x86_64-linux-gnu/
-rw-r--r-- root/root    509152 2021-09-02 04:56 ./usr/lib/debug/.dwz/x86_64-linux-gnu/bitseq.debug
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-09-02 04:56 ./usr/share/doc/bitseq-dbgsym -> bitseq


bitseq_0.7.5+dfsg-6_amd64.deb
-----------------------------

 new Debian package, version 2.0.
 size 360988 bytes: control archive=1856 bytes.
     948 bytes,    18 lines      control
    2439 bytes,    36 lines      md5sums
 Package: bitseq
 Version: 0.7.5+dfsg-6
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2043
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3), python3, python3-numpy
 Suggests: samtools
 Section: science
 Priority: optional
 Homepage: https://github.com/BitSeq/BitSeq
 Description: Bayesian Inference of Transcripts from Sequencing Data
  BitSeq is an application for inferring expression levels of individual
  transcripts from sequencing (RNA-Seq) data and estimating differential
  expression (DE) between conditions. An advantage of this approach is the
  ability to account for both technical uncertainty and intrinsic biological
  variance in order to avoid false DE calls. The technical contribution to the
  uncertainty comes both from finite read-depth and the possibly ambiguous
  mapping of reads to multiple transcripts.

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lrwxrwxrwx root/root         0 2021-09-02 04:56 ./usr/bin/biocUpdate -> ../lib/debian-med/bin/biocUpdate.sh
lrwxrwxrwx root/root         0 2021-09-02 04:56 ./usr/bin/checkTR -> ../lib/debian-med/bin/checkTR.py
-rwxr-xr-x root/root    113032 2021-09-02 04:56 ./usr/bin/convertSamples
-rwxr-xr-x root/root    166280 2021-09-02 04:56 ./usr/bin/estimateDE
-rwxr-xr-x root/root    199048 2021-09-02 04:56 ./usr/bin/estimateExpression
-rwxr-xr-x root/root    182664 2021-09-02 04:56 ./usr/bin/estimateHyperPar
-rwxr-xr-x root/root    178568 2021-09-02 04:56 ./usr/bin/estimateVBExpression
-rwxr-xr-x root/root    121224 2021-09-02 04:56 ./usr/bin/extractSamples
lrwxrwxrwx root/root         0 2021-09-02 04:56 ./usr/bin/extractTranscriptInfo -> ../lib/debian-med/bin/extractTranscriptInfo.py
lrwxrwxrwx root/root         0 2021-09-02 04:56 ./usr/bin/getCounts -> ../lib/debian-med/bin/getCounts.py
-rwxr-xr-x root/root    117128 2021-09-02 04:56 ./usr/bin/getFoldChange
-rwxr-xr-x root/root    133512 2021-09-02 04:56 ./usr/bin/getGeneExpression
-rwxr-xr-x root/root    125320 2021-09-02 04:56 ./usr/bin/getPPLR
-rwxr-xr-x root/root    121224 2021-09-02 04:56 ./usr/bin/getVariance
-rwxr-xr-x root/root    141704 2021-09-02 04:56 ./usr/bin/getWithinGeneExpression
-rwxr-xr-x root/root    327440 2021-09-02 04:56 ./usr/bin/parseAlignment
-rwxr-xr-x root/root     92552 2021-09-02 04:56 ./usr/bin/transposeLargeFile
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root       521 2014-03-04 23:44 ./usr/lib/debian-med/bin/biocUpdate.sh
-rwxr-xr-x root/root      2106 2021-09-02 04:56 ./usr/lib/debian-med/bin/checkTR.py
-rwxr-xr-x root/root      2660 2021-09-02 04:56 ./usr/lib/debian-med/bin/extractTranscriptInfo.py
-rwxr-xr-x root/root      2759 2021-09-02 04:56 ./usr/lib/debian-med/bin/getCounts.py
-rwxr-xr-x root/root     17285 2021-09-02 04:56 ./usr/lib/debian-med/bin/parseAlignment.py
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/doc/bitseq/
-rw-r--r-- root/root       898 2021-09-02 04:56 ./usr/share/doc/bitseq/README.Debian
-rw-r--r-- root/root       677 2021-09-02 04:56 ./usr/share/doc/bitseq/changelog.Debian.gz
-rw-r--r-- root/root       981 2021-09-02 04:56 ./usr/share/doc/bitseq/copyright
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/man/
drwxr-xr-x root/root         0 2021-09-02 04:56 ./usr/share/man/man1/
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-rw-r--r-- root/root       706 2021-09-02 04:56 ./usr/share/man/man1/getGeneExpression.1.gz
-rw-r--r-- root/root       737 2021-09-02 04:56 ./usr/share/man/man1/getPPLR.1.gz
-rw-r--r-- root/root       583 2021-09-02 04:56 ./usr/share/man/man1/getVariance.1.gz
-rw-r--r-- root/root       800 2021-09-02 04:56 ./usr/share/man/man1/getWithinGeneExpression.1.gz
-rw-r--r-- root/root      1253 2021-09-02 04:56 ./usr/share/man/man1/parseAlignment.1.gz
-rw-r--r-- root/root       416 2021-09-02 04:56 ./usr/share/man/man1/transposeLargeFile.1.gz


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Warning in processable bitseq_0.7.5+dfsg-6.dsc: Argument "v0.902.0" isn't numeric in numeric lt (<) at /usr/share/lintian/lib/Lintian/Check/Debian/Upstream/Metadata.pm line 106.
W: bitseq changes: distribution-and-changes-mismatch sid unstable
W: bitseq: no-manual-page [usr/bin/biocUpdate]
W: bitseq: no-manual-page [usr/bin/checkTR]

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Build Architecture: amd64
Build Type: binary
Build-Space: 80228
Build-Time: 23
Distribution: sid
Host Architecture: amd64
Install-Time: 24
Job: /tmp/debusine-fetch-exec-upload-1slqjr7j/bitseq_0.7.5+dfsg-6.dsc
Lintian: warn
Machine Architecture: amd64
Package: bitseq
Package-Time: 64
Source-Version: 0.7.5+dfsg-6
Space: 80228
Status: successful
Version: 0.7.5+dfsg-6
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Finished at 2024-09-26T07:15:21Z
Build needed 00:01:04, 80228k disk space

Relations

Relation Direction Type Name
relates-to Source package bitseq_0.7.5+dfsg-6
relates-to Binary package python3-numpy-dbgsym_1:2.1.1+ds-3_amd64
relates-to Binary package python3-numpy-dev_1:2.1.1+ds-3_amd64
relates-to Binary package python3-numpy_1:2.1.1+ds-3_amd64
relates-to Binary package python-numpy-doc_1:2.1.1+ds-3_all
relates-to Binary package bitseq-dbgsym_0.7.5+dfsg-6_amd64
relates-to Binary package bitseq_0.7.5+dfsg-6_amd64
relates-to Binary packages bitseq_0.7.5+dfsg-6

build log System… build a package… - 3 weeks, 3 days ago 0 minutes
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