sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-07.freexian.com
+==============================================================================+
| macs 3.0.2-1+bd1 (arm64) Thu, 26 Sep 2024 09:27:33 +0000 |
+==============================================================================+
Package: macs
Version: 3.0.2-1+bd1
Source Version: 3.0.2-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/807048/system.tar.xz to /tmp/tmp.sbuild.1RP0dKLLle...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Chroot Setup Commands |
+------------------------------------------------------------------------------+
rm -f /etc/resolv.conf
----------------------
I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-exkdjeef/python3-numpy-dbgsym_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-exkdjeef/python3-numpy-dev_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-exkdjeef/python3-numpy_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-exkdjeef/python-numpy-doc_2.1.1+ds-3_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/macs-aXoxcu/resolver-pecQFJ' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
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Get:1 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ InRelease
Ign:1 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ InRelease
Get:2 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ Release [606 B]
Get:4 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ Release.gpg
Ign:4 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ Release.gpg
Get:5 file:/build/macs-aXoxcu/resolver-9LnV96/apt_archive ./ Packages [4543 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9861 kB]
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Reading package lists...
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Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
libc-bin libc6
2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 2993 kB of archives.
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Get:1 http://deb.debian.org/debian sid/main arm64 libc6 arm64 2.40-3 [2453 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 libc-bin arm64 2.40-3 [540 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../libc6_2.40-3_arm64.deb ...
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Preparing to unpack .../libc-bin_2.40-3_arm64.deb ...
Unpacking libc-bin (2.40-3) over (2.40-2) ...
Setting up libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-exkdjeef/macs_3.0.2-1.dsc exists in /tmp/debusine-fetch-exec-upload-exkdjeef; copying to chroot
I: NOTICE: Log filtering will replace 'build/macs-aXoxcu/macs-3.0.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-aXoxcu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [868 B]
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Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-9LnV96/apt_archive ./ InRelease
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Get:2 file:/<<BUILDDIR>>/resolver-9LnV96/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-9LnV96/apt_archive ./ Release [606 B]
Get:3 file:/<<BUILDDIR>>/resolver-9LnV96/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-9LnV96/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu help2man libasan8 libatomic1
libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl
libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgssapi-krb5-2
libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0
liblocale-gettext-perl liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libsimde-dev libstdc++-14-dev libtirpc-common libtirpc3t64
libtool libtsan2 libubsan1 linux-libc-dev m4 media-types po-debconf procps
pybuild-plugin-pyproject python3 python3-all python3-all-dev
python3-autocommand python3-build python3-cykhash python3-decorator
python3-dev python3-hmmlearn python3-inflect python3-iniconfig
python3-installer python3-jaraco.context python3-jaraco.functools
python3-joblib python3-minimal python3-more-itertools python3-numpy
python3-packaging python3-pip python3-pkg-resources python3-pluggy
python3-pyproject-hooks python3-pytest python3-scipy python3-setuptools
python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-toml
python3-typeguard python3-typing-extensions python3-wheel python3-zipp
python3.12 python3.12-dev python3.12-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc krb5-doc
krb5-user libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc libmail-box-perl python3-doc python3-tk python3-venv python-build-doc
python-installer-doc python-joblib-doc gfortran python-numpy-doc
python-scipy-doc python-setuptools-doc python3-dap python-sklearn-doc
ipython3 python3.12-venv python3.12-doc binfmt-support
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common krb5-locales
libgpm2 libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults
python3-simplejson python3-psutil python3-pygments python3-pil
python3-matplotlib
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu help2man libasan8 libatomic1
libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl
libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgssapi-krb5-2
libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0
liblocale-gettext-perl liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libsimde-dev libstdc++-14-dev libtirpc-common libtirpc3t64
libtool libtsan2 libubsan1 linux-libc-dev m4 media-types po-debconf procps
pybuild-plugin-pyproject python3 python3-all python3-all-dev
python3-autocommand python3-build python3-cykhash python3-decorator
python3-dev python3-hmmlearn python3-inflect python3-iniconfig
python3-installer python3-jaraco.context python3-jaraco.functools
python3-joblib python3-minimal python3-more-itertools python3-numpy
python3-packaging python3-pip python3-pkg-resources python3-pluggy
python3-pyproject-hooks python3-pytest python3-scipy python3-setuptools
python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-toml
python3-typeguard python3-typing-extensions python3-wheel python3-zipp
python3.12 python3.12-dev python3.12-minimal rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded.
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Get:16 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.6-1 [669 kB]
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Get:21 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-5 [868 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
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Get:29 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
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Get:32 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
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Get:43 http://deb.debian.org/debian sid/main arm64 libatomic1 arm64 14.2.0-5 [10.1 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-5 [2578 kB]
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Get:47 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-5 [1040 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-5 [1442 kB]
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Get:50 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-5 [17.7 MB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-5 [513 kB]
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Get:55 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-5 [10.1 MB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-5 [19.7 kB]
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Get:58 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.1.0-2 [1328 B]
Get:59 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.10 [4516 B]
Get:60 http://deb.debian.org/debian sid/main arm64 cython3 arm64 3.0.11+dfsg-1 [2192 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
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Get:70 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.4.0-1 [63.7 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.0.2-1 [11.7 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 help2man arm64 1.49.3 [198 kB]
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Get:88 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
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Get:101 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-all arm64 3.12.6-1 [1040 B]
Get:107 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.6-1 [506 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B]
Get:110 http://deb.debian.org/debian sid/main arm64 python3-cykhash arm64 2.0.0-3+b1 [387 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB]
Get:114 http://deb.debian.org/debian sid/main arm64 python3-joblib all 1.3.2-3 [216 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3213 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 python3-hmmlearn arm64 0.3.0-5+b1 [109 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:120 http://deb.debian.org/debian sid/main arm64 python3-pip all 24.2+dfsg-1 [1434 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
W: Extra package /tmp/debusine-fetch-exec-upload-exkdjeef/python3-numpy-dbgsym_2.1.1+ds-3_amd64.deb of architecture amd64 cannot be installed in the chroot
W: Extra package /tmp/debusine-fetch-exec-upload-exkdjeef/python3-numpy-dev_2.1.1+ds-3_amd64.deb of architecture amd64 cannot be installed in the chroot
W: Extra package /tmp/debusine-fetch-exec-upload-exkdjeef/python3-numpy_2.1.1+ds-3_amd64.deb of architecture amd64 cannot be installed in the chroot
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-5 gcc-14_14.2.0-5 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.11-1
Package versions: apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 bc_1.07.1-4 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.2.0-5 cpp-14-aarch64-linux-gnu_14.2.0-5 cpp-aarch64-linux-gnu_4:14.1.0-2 cython3_3.0.11+dfsg-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-14_14.2.0-5 g++-14-aarch64-linux-gnu_14.2.0-5 g++-aarch64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-14_14.2.0-5 gcc-14-aarch64-linux-gnu_14.2.0-5 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libnet-http-perl_6.23-1 libnet-ipv6addr-perl_1.02-1 libnet-netmask-perl_2.0002-2 libnet-ssleay-perl_1.94-1+b1 libnetaddr-ip-perl_4.079+dfsg-2+b3 libnettle8t64_3.10-1 libnsl2_1.3.0-3+b2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.5-2 libpackage-stash-perl_0.40-1 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libparams-classify-perl_0.015-2+b3 libparams-util-perl_1.102-3 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperlio-gzip-perl_0.20-1+b3 libperlio-utf8-strict-perl_0.010-1+b2 libpipeline1_1.5.8-1 libproc-processtable-perl_0.636-1+b2 libproc2-0_2:4.0.4-5 libpython3-all-dev_3.12.6-1 libpython3-dev_3.12.6-1 libpython3-stdlib_3.12.6-1 libpython3.12-dev_3.12.6-1 libpython3.12-minimal_3.12.6-1 libpython3.12-stdlib_3.12.6-1 libpython3.12t64_3.12.6-1 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librole-tiny-perl_2.002004-1 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b2 libsereal-encoder-perl_5.004+ds-1+b2 libsframe1_2.43.1-5 libsimde-dev_0.8.2-1 libsmartcols1_2.40.2-8 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b2 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b2 libsub-quote-perl_2.006008-1 libsyntax-keyword-try-perl_0.30-1 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libterm-readkey-perl_2.38-2+b3 libtext-glob-perl_0.11-3 libtext-levenshteinxs-perl_0.03-5+b3 libtext-markdown-discount-perl_0.16-1+b2 libtext-xslate-perl_3.5.9-2 libtime-duration-perl_1.21-2 libtime-moment-perl_0.44-2+b3 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtool_2.4.7-7 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-5 libubsan1_14.2.0-5 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunicode-utf8-perl_0.62-2+b2 libunistring5_1.2-1 liburi-perl_5.29-1 libuuid1_2.40.2-8 libvariable-magic-perl_0.64-1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-4 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg-3+b1 libxs-parse-keyword-perl_0.46-1 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-1 libzstd1_1.5.6+dfsg-1 lintian_2.118.2 linux-libc-dev_6.10.11-1 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-8 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-5 pybuild-plugin-pyproject_6.20240824 python3_3.12.6-1 python3-all_3.12.6-1 python3-all-dev_3.12.6-1 python3-autocommand_2.2.2-3 python3-build_1.2.2-1 python3-cykhash_2.0.0-3+b1 python3-decorator_5.1.1-5 python3-dev_3.12.6-1 python3-hmmlearn_0.3.0-5+b1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-installer_0.7.0+dfsg1-3 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.0.2-1 python3-joblib_1.3.2-3 python3-minimal_3.12.6-1 python3-more-itertools_10.4.0-1 python3-numpy_1:1.26.4+ds-11 python3-packaging_24.1-1 python3-pip_24.2+dfsg-1 python3-pkg-resources_74.1.2-2 python3-pluggy_1.5.0-1 python3-pyproject-hooks_1.1.0-2 python3-pytest_8.3.3-1 python3-scipy_1.13.1-5 python3-setuptools_74.1.2-2 python3-sklearn_1.4.2+dfsg-6 python3-sklearn-lib_1.4.2+dfsg-6 python3-threadpoolctl_3.1.0-1 python3-toml_0.10.2-1 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-wheel_0.44.0-2 python3-zipp_3.20.2-1 python3.12_3.12.6-1 python3.12-dev_3.12.6-1 python3.12-minimal_3.12.6-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024a-4 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: macs
Binary: macs
Architecture: any
Version: 3.0.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/taoliu/MACS/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/macs
Vcs-Git: https://salsa.debian.org/med-team/macs.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc
Package-List:
macs deb science optional arch=any
Checksums-Sha1:
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037228c491ed98c0b9fda258c31e37bf6df33786 1267764 macs_3.0.2-1.debian.tar.xz
Checksums-Sha256:
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Files:
2f1ec9ab99edddaf84958b65c305532e 197484503 macs_3.0.2.orig.tar.gz
49878947e75c0f6c36647c4db924eb18 1267764 macs_3.0.2-1.debian.tar.xz
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gpgv: Signature made Sat Sep 7 23:10:03 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1.dsc: no acceptable signature found
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_3.0.2.orig.tar.gz
dpkg-source: info: unpacking macs_3.0.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying keep_debug
dpkg-source: info: applying simde.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.2-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 3.0.2-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf test/macs3.0.2-1+bd1* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS3/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3
* Building wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-cpython-312
creating build/lib.linux-aarch64-cpython-312/MACS3
copying MACS3/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3
creating build/lib.linux-aarch64-cpython-312/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.linux-aarch64-cpython-312/MACS3/IO
creating build/lib.linux-aarch64-cpython-312/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Signal
creating build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
creating build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/MACS3
creating build/temp.linux-aarch64-cpython-312/MACS3/Signal
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_HMM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Prob' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Prob.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Prob.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Prob.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Region' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Region.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Region.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Region.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Pileup' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Pileup.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Pileup.o -w -O3
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/cPosValCalculation.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Pileup.o build/temp.linux-aarch64-cpython-312/MACS3/Signal/cPosValCalculation.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PileupV2' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PileupV2.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakModel' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakModel.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakDetect' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.SignalProcessing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.FixWidthTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PairedEndTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.BedGraph' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/BedGraph.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.ScoreTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.CallPeakUnit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.VariantStat' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/VariantStat.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.ReadAlignment' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/RACollection.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/swalign.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/htab.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mag.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/misc.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rle.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rope.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/RACollection.o build/temp.linux-aarch64-cpython-312/MACS3/Signal/swalign.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bfc.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bseq.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bubble.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/htab.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/ksw.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/kthread.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mag.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/misc.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mrope.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rld0.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rle.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rope.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/unitig.o -L/usr/lib/aarch64-linux-gnu -lm -lz -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.UnitigRACollection' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PosReadsInfo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakVariants' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.Parser' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/IO
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/Parser.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/Parser.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/Parser.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.PeakIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/PeakIO.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/PeakIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/PeakIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.BedGraphIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.BAM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/BAM.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/BAM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/BAM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting bin/macs3 -> build/scripts-3.12
changing mode of build/scripts-3.12/macs3 from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/MACS3
copying build/lib.linux-aarch64-cpython-312/MACS3/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
creating build/bdist.linux-aarch64/wheel/MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
creating build/bdist.linux-aarch64/wheel/MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
creating build/bdist.linux-aarch64/wheel/MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
running install_egg_info
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.linux-aarch64/wheel/./MACS3-3.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
copying build/scripts-3.12/macs3 -> build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts/macs3 to 755
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/.tmp-ntmiuchk/MACS3-3.0.2-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'MACS3-3.0.2.data/scripts/macs3'
adding 'MACS3-3.0.2.dist-info/LICENSE'
adding 'MACS3-3.0.2.dist-info/METADATA'
adding 'MACS3-3.0.2.dist-info/WHEEL'
adding 'MACS3-3.0.2.dist-info/top_level.txt'
adding 'MACS3-3.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built MACS3-3.0.2-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info \
--name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs3_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info --version-string="3.0.2" \
--include debian/macs3_${subcommand}-man-include \
"python3 bin/macs3 ${subcommand}" > \
debian/macs3_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/build; python3.12 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 68 items
test/test_BAMBAI.py ........... [ 16%]
test/test_BedGraph.py ... [ 20%]
test/test_FixWidthTrack.py .... [ 26%]
test/test_HMMR_HMM.py ss [ 29%]
test/test_HMMR_poisson.py .. [ 32%]
test/test_PairedEndTrack.py .... [ 38%]
test/test_Parser.py ... [ 42%]
test/test_PeakIO.py . [ 44%]
test/test_Pileup.py .......... [ 58%]
test/test_Prob.py ................ [ 82%]
test/test_Region.py ..... [ 89%]
test/test_ScoreTrack.py .... [ 95%]
test/test_SignalProcessing.py s. [ 98%]
test/test_online.py . [100%]
======================== 65 passed, 3 skipped in 7.22s =========================
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
debian/rules execute_before_dh_python3
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz: debian/macs/usr/lib/python3/dist-packages/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 905066 new size 906368
dwz: debian/macs/usr/lib/python3/dist-packages/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 987722 new size 994633
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_3.0.2-1+bd1_arm64.deb'.
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.2-1+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../macs_3.0.2-1+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../macs_3.0.2-1+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-09-26T09:35:10Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_3.0.2-1+bd1_arm64.changes:
-------------------------------
Format: 1.8
Date: Thu, 26 Sep 2024 09:28:51 +0000
Source: macs (3.0.2-1)
Binary: macs macs-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 3.0.2-1+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (3.0.2-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for numpy-2
Checksums-Sha1:
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Checksums-Sha256:
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Files:
5d44731a17d56d48287061ab28a32e76 12151388 debug optional macs-dbgsym_3.0.2-1+bd1_arm64.deb
a99735bc40265edaf6d3d48d9ece9c5a 7563 science optional macs_3.0.2-1+bd1_arm64.buildinfo
42c102eb1a5bf837537729785b1c2e30 2843064 science optional macs_3.0.2-1+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: macs (3.0.2-1)
Binary: macs macs-dbgsym
Architecture: arm64
Version: 3.0.2-1+bd1
Binary-Only-Changes:
macs (3.0.2-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for numpy-2
.
-- Debusine Rebuild <debusine@example.net> Thu, 26 Sep 2024 09:28:51 +0000
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 26 Sep 2024 09:35:09 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.4),
bash (= 5.2.32-1+b1),
bc (= 1.07.1-4),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-8),
bsdutils (= 1:2.40.2-8),
build-essential (= 12.10),
bzip2 (= 1.0.8-6),
ca-certificates (= 20240203),
coreutils (= 9.4-3.1),
cpp (= 4:14.1.0-2),
cpp-14 (= 14.2.0-5),
cpp-14-aarch64-linux-gnu (= 14.2.0-5),
cpp-aarch64-linux-gnu (= 4:14.1.0-2),
cython3 (= 3.0.11+dfsg-1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.1.0-2),
g++-14 (= 14.2.0-5),
g++-14-aarch64-linux-gnu (= 14.2.0-5),
g++-aarch64-linux-gnu (= 4:14.1.0-2),
gcc (= 4:14.1.0-2),
gcc-14 (= 14.2.0-5),
gcc-14-aarch64-linux-gnu (= 14.2.0-5),
gcc-14-base (= 14.2.0-5),
gcc-aarch64-linux-gnu (= 4:14.1.0-2),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
help2man (= 1.49.3),
hostname (= 3.23+nmu2),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-5),
libatomic1 (= 14.2.0-5),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-8),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-2),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-5),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-7),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.191-2),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-5),
libgcc-s1 (= 14.2.0-5),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-5),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgomp1 (= 14.2.0-5),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhwasan0 (= 14.2.0-5),
libicu72 (= 72.1-5),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-5),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
liblbfgsb0 (= 3.0+dfsg.4-1+b1),
liblocale-gettext-perl (= 1.07-7),
liblsan0 (= 14.2.0-5),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-8),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnsl2 (= 1.3.0-3+b2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.38t64 (= 5.38.2-5),
libpipeline1 (= 1.5.8-1),
libproc2-0 (= 2:4.0.4-5),
libpython3-all-dev (= 3.12.6-1),
libpython3-dev (= 3.12.6-1),
libpython3-stdlib (= 3.12.6-1),
libpython3.12-dev (= 3.12.6-1),
libpython3.12-minimal (= 3.12.6-1),
libpython3.12-stdlib (= 3.12.6-1),
libpython3.12t64 (= 3.12.6-1),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsimde-dev (= 0.8.2-1),
libsmartcols1 (= 2.40.2-8),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-5),
libstdc++6 (= 14.2.0-5),
libsystemd0 (= 256.6-1),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-5),
libubsan1 (= 14.2.0-5),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.6-1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-8),
libxml2 (= 2.12.7+dfsg-3+b1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.10.11-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl (= 3.3.2-1),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.38.2-5),
perl-base (= 5.38.2-5),
perl-modules-5.38 (= 5.38.2-5),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-5),
pybuild-plugin-pyproject (= 6.20240824),
python3 (= 3.12.6-1),
python3-all (= 3.12.6-1),
python3-all-dev (= 3.12.6-1),
python3-autocommand (= 2.2.2-3),
python3-build (= 1.2.2-1),
python3-cykhash (= 2.0.0-3+b1),
python3-decorator (= 5.1.1-5),
python3-dev (= 3.12.6-1),
python3-hmmlearn (= 0.3.0-5+b1),
python3-inflect (= 7.3.1-2),
python3-iniconfig (= 1.1.1-2),
python3-installer (= 0.7.0+dfsg1-3),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.0.2-1),
python3-joblib (= 1.3.2-3),
python3-minimal (= 3.12.6-1),
python3-more-itertools (= 10.4.0-1),
python3-numpy (= 1:1.26.4+ds-11),
python3-packaging (= 24.1-1),
python3-pip (= 24.2+dfsg-1),
python3-pkg-resources (= 74.1.2-2),
python3-pluggy (= 1.5.0-1),
python3-pyproject-hooks (= 1.1.0-2),
python3-pytest (= 8.3.3-1),
python3-scipy (= 1.13.1-5),
python3-setuptools (= 74.1.2-2),
python3-sklearn (= 1.4.2+dfsg-6),
python3-sklearn-lib (= 1.4.2+dfsg-6),
python3-threadpoolctl (= 3.1.0-1),
python3-toml (= 0.10.2-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-wheel (= 0.44.0-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.6-1),
python3.12-dev (= 3.12.6-1),
python3.12-minimal (= 3.12.6-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.10-2),
tar (= 1.35+dfsg-3),
tzdata (= 2024a-4),
util-linux (= 2.40.2-8),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1727342931"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_3.0.2-1+bd1_arm64.deb
---------------------------------
new Debian package, version 2.0.
size 12151388 bytes: control archive=1744 bytes.
1362 bytes, 12 lines control
2732 bytes, 26 lines md5sums
Package: macs-dbgsym
Source: macs (3.0.2-1)
Version: 3.0.2-1+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 12591
Depends: macs (= 3.0.2-1+bd1)
Section: debug
Priority: optional
Description: debug symbols for macs
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drwxr-xr-x root/root 0 2024-09-26 09:28 ./
drwxr-xr-x root/root 0 2024-09-26 09:28 ./usr/
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drwxr-xr-x root/root 0 2024-09-26 09:28 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-09-26 09:28 ./usr/lib/debug/.build-id/00/
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drwxr-xr-x root/root 0 2024-09-26 09:28 ./usr/lib/debug/.build-id/2b/
-rw-r--r-- root/root 1001432 2024-09-26 09:28 ./usr/lib/debug/.build-id/2b/6b415034b8ffcede63fa91a61afb97c64cd08b.debug
drwxr-xr-x root/root 0 2024-09-26 09:28 ./usr/lib/debug/.build-id/37/
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drwxr-xr-x root/root 0 2024-09-26 09:28 ./usr/lib/debug/.build-id/78/
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macs_3.0.2-1+bd1_arm64.deb
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new Debian package, version 2.0.
size 2843064 bytes: control archive=3392 bytes.
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7326 bytes, 77 lines md5sums
255 bytes, 12 lines * postinst #!/bin/sh
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Package: macs
Source: macs (3.0.2-1)
Version: 3.0.2-1+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8057
Depends: python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.13), python3 (>= 3.12~), python3-cykhash, python3-hmmlearn, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.38), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
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