sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-06.freexian.com
+==============================================================================+
| pybigwig 0.3.22+dfsg-2+bd1 (arm64) Thu, 26 Sep 2024 09:42:39 +0000 |
+==============================================================================+
Package: pybigwig
Version: 0.3.22+dfsg-2+bd1
Source Version: 0.3.22+dfsg-2
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/807048/system.tar.xz to /tmp/tmp.sbuild.V6Umz69Srr...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Chroot Setup Commands |
+------------------------------------------------------------------------------+
rm -f /etc/resolv.conf
----------------------
I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-w03tz8jl/python3-numpy-dbgsym_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-w03tz8jl/python3-numpy-dev_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-w03tz8jl/python3-numpy_2.1.1+ds-3_amd64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-w03tz8jl/python-numpy-doc_2.1.1+ds-3_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/pybigwig-TDa0eM/resolver-yzIkC4' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
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Get:1 file:/build/pybigwig-TDa0eM/resolver-w8OKY1/apt_archive ./ InRelease
Ign:1 file:/build/pybigwig-TDa0eM/resolver-w8OKY1/apt_archive ./ InRelease
Get:2 file:/build/pybigwig-TDa0eM/resolver-w8OKY1/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
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Get:4 file:/build/pybigwig-TDa0eM/resolver-w8OKY1/apt_archive ./ Release.gpg
Ign:4 file:/build/pybigwig-TDa0eM/resolver-w8OKY1/apt_archive ./ Release.gpg
Get:5 file:/build/pybigwig-TDa0eM/resolver-w8OKY1/apt_archive ./ Packages [4543 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9861 kB]
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Reading package lists...
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Calculating upgrade...
The following packages will be upgraded:
libc-bin libc6
2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../libc-bin_2.40-3_arm64.deb ...
Unpacking libc-bin (2.40-3) over (2.40-2) ...
Setting up libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-w03tz8jl/pybigwig_0.3.22+dfsg-2.dsc exists in /tmp/debusine-fetch-exec-upload-w03tz8jl; copying to chroot
I: NOTICE: Log filtering will replace 'build/pybigwig-TDa0eM/pybigwig-0.3.22+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-TDa0eM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Ign:3 file:/<<BUILDDIR>>/resolver-w8OKY1/apt_archive ./ Release.gpg
Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libatomic1
libbigwig-dev libbigwig0t64 libblas3 libbrotli-dev libbrotli1 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls-dev
libdebhelper-perl libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev
libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5
libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64
libgnutls28-dev libgssapi-krb5-2 libhwasan0 libidn2-dev libisl23 libitm1
libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblsan0 libmpc3 libmpfr6
libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev
libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8
libngtcp2-dev libnsl2 libp11-kit-dev libpkgconf3 libpsl-dev libpsl5t64
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librtmp-dev
librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1-dev libssh2-1t64
libssl-dev libstdc++-14-dev libtasn1-6-dev libtirpc-common libtirpc3t64
libtool libtsan2 libubsan1 libunbound8 libzstd-dev linux-libc-dev m4
media-types nettle-dev pkgconf pkgconf-bin po-debconf python3 python3-all
python3-all-dev python3-autocommand python3-dev python3-inflect
python3-jaraco.context python3-jaraco.functools python3-minimal
python3-more-itertools python3-numpy python3-pkg-resources
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make flit python3-build python3-installer python3-wheel
gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu libc-devtools glibc-doc libcurl4-doc libidn-dev
libkrb5-dev libldap2-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data
gnutls-bin gnutls-doc krb5-doc krb5-user libnghttp2-doc p11-kit-doc
libssl-doc libstdc++-14-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest python-setuptools-doc python3.12-venv
python3.12-doc binfmt-support
Recommended packages:
curl manpages manpages-dev libarchive-cpio-perl javascript-common
krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules
libtasn1-doc libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libatomic1
libbigwig-dev libbigwig0t64 libblas3 libbrotli-dev libbrotli1 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls-dev
libdebhelper-perl libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev
libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5
libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64
libgnutls28-dev libgssapi-krb5-2 libhwasan0 libidn2-dev libisl23 libitm1
libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblsan0 libmpc3 libmpfr6
libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev
libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8
libngtcp2-dev libnsl2 libp11-kit-dev libpkgconf3 libpsl-dev libpsl5t64
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librtmp-dev
librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1-dev libssh2-1t64
libssl-dev libstdc++-14-dev libtasn1-6-dev libtirpc-common libtirpc3t64
libtool libtsan2 libubsan1 libunbound8 libzstd-dev linux-libc-dev m4
media-types nettle-dev pkgconf pkgconf-bin po-debconf python3 python3-all
python3-all-dev python3-autocommand python3-dev python3-inflect
python3-jaraco.context python3-jaraco.functools python3-minimal
python3-more-itertools python3-numpy python3-pkg-resources
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded.
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Get:22 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.10.11-1 [2399 kB]
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Get:42 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-5 [2385 kB]
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Get:55 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.10 [4516 B]
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Get:60 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
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Get:67 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
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Get:72 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
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Get:82 http://deb.debian.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB]
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Get:93 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libunbound8 arm64 1.20.0-1+b1 [542 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 nettle-dev arm64 3.10-1 [1323 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libnghttp3-dev arm64 1.4.0-1 [85.3 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libssh2-1-dev arm64 1.11.0-7 [353 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libcurl4-gnutls-dev arm64 8.10.1-1 [456 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-5 [361 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.6-1 [1981 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.6-1 [4782 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B]
Get:129 http://deb.debian.org/debian sid/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B]
Get:130 http://deb.debian.org/debian sid/main arm64 python3-all arm64 3.12.6-1 [1040 B]
Get:131 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.6-1 [506 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B]
Get:134 http://deb.debian.org/debian sid/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
W: Extra package /tmp/debusine-fetch-exec-upload-w03tz8jl/python3-numpy-dbgsym_2.1.1+ds-3_amd64.deb of architecture amd64 cannot be installed in the chroot
W: Extra package /tmp/debusine-fetch-exec-upload-w03tz8jl/python3-numpy-dev_2.1.1+ds-3_amd64.deb of architecture amd64 cannot be installed in the chroot
W: Extra package /tmp/debusine-fetch-exec-upload-w03tz8jl/python3-numpy_2.1.1+ds-3_amd64.deb of architecture amd64 cannot be installed in the chroot
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-5 gcc-14_14.2.0-5 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.11-1
Package versions: apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.2.0-5 cpp-14-aarch64-linux-gnu_14.2.0-5 cpp-aarch64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-14_14.2.0-5 g++-14-aarch64-linux-gnu_14.2.0-5 g++-aarch64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-14_14.2.0-5 gcc-14-aarch64-linux-gnu_14.2.0-5 gcc-14-base_14.2.0-5 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pybigwig
Binary: python3-pybigwig
Architecture: any
Version: 0.3.22+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Diane Trout <diane@ghic.org>
Homepage: https://github.com/dpryan79/pyBigWig
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/pybigwig
Vcs-Git: https://salsa.debian.org/med-team/pybigwig.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all
Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Package-List:
python3-pybigwig deb science optional arch=any
Checksums-Sha1:
94aefc0d01dc0adc2fd2e355c46ea3063201b00d 31629 pybigwig_0.3.22+dfsg.orig.tar.gz
1a4fbf2e5e95e9b63808d81bcf591163c02ea512 4752 pybigwig_0.3.22+dfsg-2.debian.tar.xz
Checksums-Sha256:
80807fa4bf3ccb42661f38857a437abe9ba3bcc3d79590c28c582a3ec71b75d2 31629 pybigwig_0.3.22+dfsg.orig.tar.gz
f880ba275fd85a614a21f6aea3b553844c83567704e13087f81f3f123e73b3d6 4752 pybigwig_0.3.22+dfsg-2.debian.tar.xz
Files:
88cd4bbd371ceabff3945b34cb6e4e91 31629 pybigwig_0.3.22+dfsg.orig.tar.gz
019839f95e584597bf2bb6e2289936c0 4752 pybigwig_0.3.22+dfsg-2.debian.tar.xz
Dgit: fbb274c0a0127e8d7c530a8854d9f7cd49c34ec9 debian archive/debian/0.3.22+dfsg-2 https://git.dgit.debian.org/pybigwig
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gpgv: Signature made Mon Jul 22 20:37:22 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.22+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting pybigwig in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pybigwig_0.3.22+dfsg.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.22+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying prepareForExternalLibBigWig.patch
dpkg-source: info: applying gcc-14.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.22+dfsg-2+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.22+dfsg-2+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from pybigwig-0.3.22+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest
running egg_info
creating pyBigWig.egg-info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '**/*.h'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
building 'pyBigWig' extension
creating build
creating build/temp.linux-aarch64-cpython-312
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c pyBigWig.c -o build/temp.linux-aarch64-cpython-312/pyBigWig.o
pyBigWig.c: In function ‘PyString_AsString’:
pyBigWig.c:773:12: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
773 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/pyBigWig.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/python3.12/config-3.12-aarch64-linux-gnu -L/usr/lib/python3/dist-packages/numpy/core/include/../lib -L/usr/lib/aarch64-linux-gnu -lBigWig -lm -lz -lpython3.12 -lcurl -lnpymath -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWig.cpython-312-aarch64-linux-gnu.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build; python3.12 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybigwig
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '**/*.h'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pybigwig/build/pyBigWig.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWigTest/test.py to test.cpython-312.pyc
running install_egg_info
Copying pyBigWig.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.12/dist-packages/pyBigWig-0.3.22.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.22+dfsg-2+bd1_arm64.deb'.
dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.22+dfsg-2+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../pybigwig_0.3.22+dfsg-2+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../pybigwig_0.3.22+dfsg-2+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from pybigwig-0.3.22+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-09-26T09:43:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pybigwig_0.3.22+dfsg-2+bd1_arm64.changes:
-----------------------------------------
Format: 1.8
Date: Thu, 26 Sep 2024 09:43:40 +0000
Source: pybigwig (0.3.22+dfsg-2)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 0.3.22+dfsg-2+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Changes:
pybigwig (0.3.22+dfsg-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for numpy-2
Checksums-Sha1:
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df48944ba3888c1e29b9015216f092e97e9b8023334c868f6c3121e05b221f0f 52276 python3-pybigwig-dbgsym_0.3.22+dfsg-2+bd1_arm64.deb
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Files:
131d077955d8e862bf755c29b08ebe1e 8253 science optional pybigwig_0.3.22+dfsg-2+bd1_arm64.buildinfo
eb0aae6e92aba04401f4a2c7f212c184 52276 debug optional python3-pybigwig-dbgsym_0.3.22+dfsg-2+bd1_arm64.deb
9b3828d5b49448b58f78cfbfb3de2b32 43704 science optional python3-pybigwig_0.3.22+dfsg-2+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: pybigwig (0.3.22+dfsg-2)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Architecture: arm64
Version: 0.3.22+dfsg-2+bd1
Binary-Only-Changes:
pybigwig (0.3.22+dfsg-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for numpy-2
.
-- Debusine Rebuild <debusine@example.net> Thu, 26 Sep 2024 09:43:40 +0000
Checksums-Md5:
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 26 Sep 2024 09:43:56 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.4),
bash (= 5.2.32-1+b1),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-8),
bsdutils (= 1:2.40.2-8),
build-essential (= 12.10),
bzip2 (= 1.0.8-6),
coreutils (= 9.4-3.1),
cpp (= 4:14.1.0-2),
cpp-14 (= 14.2.0-5),
cpp-14-aarch64-linux-gnu (= 14.2.0-5),
cpp-aarch64-linux-gnu (= 4:14.1.0-2),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.1.0-2),
g++-14 (= 14.2.0-5),
g++-14-aarch64-linux-gnu (= 14.2.0-5),
g++-aarch64-linux-gnu (= 4:14.1.0-2),
gcc (= 4:14.1.0-2),
gcc-14 (= 14.2.0-5),
gcc-14-aarch64-linux-gnu (= 14.2.0-5),
gcc-14-base (= 14.2.0-5),
gcc-aarch64-linux-gnu (= 4:14.1.0-2),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.23+nmu2),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-5),
libatomic1 (= 14.2.0-5),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbigwig-dev (= 0.4.7+dfsg-3.1+b1),
libbigwig0t64 (= 0.4.7+dfsg-3.1+b1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-8),
libbrotli-dev (= 1.1.0-2+b4),
libbrotli1 (= 1.1.0-2+b4),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-2),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-5),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcurl3t64-gnutls (= 8.10.1-1),
libcurl4-gnutls-dev (= 8.10.1-1),
libdb5.3t64 (= 5.3.28+dfsg2-7),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.191-2),
libevent-2.1-7t64 (= 2.1.12-stable-10),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-5),
libgcc-s1 (= 14.2.0-5),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-5),
libgmp-dev (= 2:6.3.0+dfsg-2+b1),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1),
libgnutls-dane0t64 (= 3.8.6-2),
libgnutls-openssl27t64 (= 3.8.6-2),
libgnutls28-dev (= 3.8.6-2),
libgnutls30t64 (= 3.8.6-2),
libgomp1 (= 14.2.0-5),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhogweed6t64 (= 3.10-1),
libhwasan0 (= 14.2.0-5),
libicu72 (= 72.1-5),
libidn2-0 (= 2.3.7-2),
libidn2-dev (= 2.3.7-2),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-5),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
libldap-2.5-0 (= 2.5.18+dfsg-3),
liblsan0 (= 14.2.0-5),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-8),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnettle8t64 (= 3.10-1),
libnghttp2-14 (= 1.63.0-1),
libnghttp2-dev (= 1.63.0-1),
libnghttp3-9 (= 1.4.0-1),
libnghttp3-dev (= 1.4.0-1),
libngtcp2-16 (= 1.6.0-1),
libngtcp2-crypto-gnutls-dev (= 1.6.0-1),
libngtcp2-crypto-gnutls8 (= 1.6.0-1),
libngtcp2-dev (= 1.6.0-1),
libnsl2 (= 1.3.0-3+b2),
libp11-kit-dev (= 0.25.5-2),
libp11-kit0 (= 0.25.5-2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.38t64 (= 5.38.2-5),
libpipeline1 (= 1.5.8-1),
libpkgconf3 (= 1.8.1-3),
libpsl-dev (= 0.21.2-1.1),
libpsl5t64 (= 0.21.2-1.1),
libpython3-all-dev (= 3.12.6-1),
libpython3-dev (= 3.12.6-1),
libpython3-stdlib (= 3.12.6-1),
libpython3.12-dev (= 3.12.6-1),
libpython3.12-minimal (= 3.12.6-1),
libpython3.12-stdlib (= 3.12.6-1),
libpython3.12t64 (= 3.12.6-1),
libreadline8t64 (= 8.2-5),
librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
libsasl2-2 (= 2.1.28+dfsg1-8),
libsasl2-modules-db (= 2.1.28+dfsg1-8),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-8),
libsqlite3-0 (= 3.46.1-1),
libssh2-1-dev (= 1.11.0-7),
libssh2-1t64 (= 1.11.0-7),
libssl-dev (= 3.3.2-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-5),
libstdc++6 (= 14.2.0-5),
libsystemd0 (= 256.6-1),
libtasn1-6 (= 4.19.0-3+b2),
libtasn1-6-dev (= 4.19.0-3+b2),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-5),
libubsan1 (= 14.2.0-5),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.6-1),
libunbound8 (= 1.20.0-1+b1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-8),
libxml2 (= 2.12.7+dfsg-3+b1),
libzstd-dev (= 1.5.6+dfsg-1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.10.11-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
nettle-dev (= 3.10-1),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.38.2-5),
perl-base (= 5.38.2-5),
perl-modules-5.38 (= 5.38.2-5),
pkgconf (= 1.8.1-3),
pkgconf-bin (= 1.8.1-3),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.12.6-1),
python3-all (= 3.12.6-1),
python3-all-dev (= 3.12.6-1),
python3-autocommand (= 2.2.2-3),
python3-dev (= 3.12.6-1),
python3-inflect (= 7.3.1-2),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.0.2-1),
python3-minimal (= 3.12.6-1),
python3-more-itertools (= 10.4.0-1),
python3-numpy (= 1:1.26.4+ds-11),
python3-pkg-resources (= 74.1.2-2),
python3-setuptools (= 74.1.2-2),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.6-1),
python3.12-dev (= 3.12.6-1),
python3.12-minimal (= 3.12.6-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.10-2),
tar (= 1.35+dfsg-3),
tzdata (= 2024a-4),
util-linux (= 2.40.2-8),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1727343820"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pybigwig-dbgsym_0.3.22+dfsg-2+bd1_arm64.deb
---------------------------------------------------
new Debian package, version 2.0.
size 52276 bytes: control archive=556 bytes.
433 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-pybigwig-dbgsym
Source: pybigwig (0.3.22+dfsg-2)
Version: 0.3.22+dfsg-2+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 74
Depends: python3-pybigwig (= 0.3.22+dfsg-2+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-pybigwig
Build-Ids: 82c8ce5ea1a31fc11644b6ec155216f33401a78e
drwxr-xr-x root/root 0 2024-09-26 09:43 ./
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drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/debug/.build-id/82/
-rw-r--r-- root/root 65488 2024-09-26 09:43 ./usr/lib/debug/.build-id/82/c8ce5ea1a31fc11644b6ec155216f33401a78e.debug
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drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-09-26 09:43 ./usr/share/doc/python3-pybigwig-dbgsym -> python3-pybigwig
python3-pybigwig_0.3.22+dfsg-2+bd1_arm64.deb
--------------------------------------------
new Debian package, version 2.0.
size 43704 bytes: control archive=1856 bytes.
1822 bytes, 31 lines control
842 bytes, 9 lines md5sums
279 bytes, 12 lines * postinst #!/bin/sh
392 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pybigwig
Source: pybigwig (0.3.22+dfsg-2)
Version: 0.3.22+dfsg-2+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 184
Depends: python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.13), python3 (>= 3.12~), python3:any, libbigwig0t64 (>= 0.4.6), libc6 (>= 2.17), libpython3.12t64 (>= 3.12.1)
Section: science
Priority: optional
Homepage: https://github.com/dpryan79/pyBigWig
Description: Python 3 module for quick access to bigBed and bigWig files
This is a Python extension, written in C, for quick access to bigBed files,
and access to and creation of bigWig files.
.
The bigWig format was originally created in the context of genome
browsers. There, computing exact summary statistics for a given interval
is less important than quickly being able to compute an approximate
statistic. Because of this, bigWig files contain not only interval-value
associations, but also `sum of values`/`sum of squared values`/`minimum
value`/`maximum value`/`number of bases covered` for equally sized
bins of various sizes. These different sizes are referred to as "zoom
levels". The smallest zoom level has bins that are 16 times the mean
interval size in the file and each subsequent zoom level has bins 4 times
larger than the previous. This methodology is used in Kent's tools and,
therefore, likely used in almost every currently existing bigWig file.
.
When a bigWig file is queried for a summary statistic, the size of the
interval is used to determine whether to use a zoom level and, if so,
which one. The optimal zoom level is that which has the largest bins no
more than half the width of the desired interval. If no such zoom level
exists, the original intervals are instead used for the calculation.
drwxr-xr-x root/root 0 2024-09-26 09:43 ./
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/python3/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/python3/dist-packages/pyBigWig-0.3.22.egg-info/
-rw-r--r-- root/root 19746 2024-09-26 09:43 ./usr/lib/python3/dist-packages/pyBigWig-0.3.22.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2024-09-26 09:43 ./usr/lib/python3/dist-packages/pyBigWig-0.3.22.egg-info/dependency_links.txt
-rw-r--r-- root/root 22 2024-09-26 09:43 ./usr/lib/python3/dist-packages/pyBigWig-0.3.22.egg-info/top_level.txt
-rw-r--r-- root/root 134336 2024-09-26 09:43 ./usr/lib/python3/dist-packages/pyBigWig.cpython-312-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/lib/python3/dist-packages/pyBigWigTest/
-rw-r--r-- root/root 0 2023-04-07 18:29 ./usr/lib/python3/dist-packages/pyBigWigTest/__init__.py
-rw-r--r-- root/root 13185 2023-04-07 18:29 ./usr/lib/python3/dist-packages/pyBigWigTest/test.py
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/share/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-09-26 09:43 ./usr/share/doc/python3-pybigwig/
-rw-r--r-- root/root 222 2024-09-26 09:43 ./usr/share/doc/python3-pybigwig/changelog.Debian.arm64.gz
-rw-r--r-- root/root 714 2024-09-26 09:43 ./usr/share/doc/python3-pybigwig/changelog.Debian.gz
-rw-r--r-- root/root 1461 2024-07-22 20:34 ./usr/share/doc/python3-pybigwig/copyright
lintian
-------
Setup apt archive
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Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
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-------------------------------------------------------
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Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
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Running lintian...
Warning in processable pybigwig_0.3.22+dfsg-2.dsc: Argument "v0.902.0" isn't numeric in numeric lt (<) at /usr/share/lintian/lib/Lintian/Check/Debian/Upstream/Metadata.pm line 106.
I: Lintian run was successful.
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| Cleanup |
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+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 1508
Build-Time: 15
Distribution: sid
Host Architecture: arm64
Install-Time: 37
Job: /tmp/debusine-fetch-exec-upload-w03tz8jl/pybigwig_0.3.22+dfsg-2.dsc
Lintian: pass
Machine Architecture: arm64
Package: pybigwig
Package-Time: 77
Source-Version: 0.3.22+dfsg-2
Space: 1508
Status: successful
Version: 0.3.22+dfsg-2+bd1
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Finished at 2024-09-26T09:43:56Z
Build needed 00:01:17, 1508k disk space