deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Built-Using: simde (= 0.8.2-1)
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4), graphviz
Description: |-
adaptive banded Partial Order Alignment
abPOA is an extended version of Partial Order Alignment (POA) that performs
adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
can perform multiple sequence alignment (MSA) on a set of input sequences and
generate a consensus sequence by applying the heaviest bundling algorithm to
the final alignment graph.
.
abPOA can generate high-quality consensus sequences from error-prone long
reads and offer significant speed improvement over existing tools.
.
abPOA supports three alignment modes (global, local, extension) and flexible
scoring schemes that allow linear, affine and convex gap penalties. It right
now supports SSE2/SSE4.1/AVX2 vectorization.
.
For more information please refer to the paper[1] published in Bioinformatics.
.
[1]: https://dx.doi.org/10.1093/bioinformatics/btaa963
Homepage: https://github.com/yangao07/abPOA
Installed-Size: '401'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: abpoa
Priority: optional
Section: science
Source: abpoa (1.5.3-1)
Version: 1.5.3-1+bd1
srcpkg_name: abpoa
srcpkg_version: 1.5.3-1