Package org.snpeff.interval.codonChange
package org.snpeff.interval.codonChange
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ClassesClassDescriptionAnalyze codon changes based on a variant and a TranscriptCalculate codon changes produced by a deletionCalculate codon changes produced by a duplicationCalculate codon changes produced by an insertionCalculate codon changes produced by a Interval Note: An interval does not produce any effect.Calculate codon changes produced by an inversionCalculate codon changes produced by a 'mixed' variant Essentially every 'mixed' variant can be represented as a concatenation of a SNP/MNP + an INS/DELCalculate codon changes produced by a MNPCalculate codon changes produced by a SNPCalculate codon changes produced by a duplication