Package org.snpeff.motif
Class PwmAndSeqs
java.lang.Object
org.snpeff.motif.Pwm
org.snpeff.motif.PwmAndSeqs
Create a DNA motif count matrix and also
count the number of sequences in that contribute
to this motif.
- Author:
- pcingola
-
Field Summary
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiontoString()
void
updateCounts
(String dna, int inc, long rsId) Update counts matrix.Methods inherited from class org.snpeff.motif.Pwm
calcLogOddsWeight, getBestSequence, getBestSequenceStr, getCount, getId, getLogOdds, getName, getTotalCount, isConserved, length, score, set, setCounts, setId, setName, updateCounts, updateCounts