Package org.snpeff.fastq


package org.snpeff.fastq
  • Classes
    Class
    Description
    Split a fastq into N files
    Simple maipulation of fastq sequences
    Trim fastq sequence when quality drops below a threshold The resulting sequence has to ba at least 'minBases'
    Trim fastq sequence when: - Median quality drops below a threshold (mean is calculated every 2 bases instead of every base) - Sequence length is at least 'minBases' From Adrian Platts ...Also the sliding window was not every base.
    Trim fastq sequence when median quality drops below a threshold