Package org.snpeff.complexity
Class SequenceComplexity
java.lang.Object
org.snpeff.complexity.SequenceComplexity
Measures the complexity of a sequence
Ideally we'd like to measure the Kolmogorov complexity of the sequence. Unfortunately
it is not a computable function (see http://en.wikipedia.org/wiki/Kolmogorov_complexity)
- Author:
- pcingola
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionint
complexity
(String seq) Measure string's complexitydouble
Measure string's complexity ratio.
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Constructor Details
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SequenceComplexity
public SequenceComplexity()
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Method Details
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complexity
Measure string's complexity -
ratio
Measure string's complexity ratio. I.e. complexity(seq) / seq.length
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