sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-09.freexian.com
+==============================================================================+
| dipy 1.9.0-8+bd1 (arm64) Fri, 11 Oct 2024 16:15:48 +0000 |
+==============================================================================+
Package: dipy
Version: 1.9.0-8+bd1
Source Version: 1.9.0-8
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
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The following packages will be upgraded:
hostname libcurl3t64-gnutls libdb5.3t64 libhtml-form-perl
libhttp-message-perl libsystemd0 libudev1 liburi-perl tzdata
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Local sources
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Setup apt archive
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Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py, python3-matplotlib, python3-nibabel, python3-pil.imagetk, python3-pytest, python3-pandas, python3-tables, python3-tk, python3-trx-python, python3-sklearn, python3-tqdm, xvfb, xauth, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py, python3-matplotlib, python3-nibabel, python3-pil.imagetk, python3-pytest, python3-pandas, python3-tables, python3-tk, python3-trx-python, python3-sklearn, python3-tqdm, xvfb, xauth, build-essential, fakeroot, dumb-init
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The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libaec0 libasan8 libblas3
libblosc1 libblosc2-4 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libcurl4t64 libdebhelper-perl libdeflate0 libdrm-amdgpu1 libdrm-common
libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libexpat1-dev
libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfontenc1
libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgfortran5 libgl1
libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3
libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libice6
libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblcms2-2 liblerc4 libllvm19 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6
libnsl2 libopenjp2-7 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0
libraqm0 libsensors-config libsensors5 libsharpyuv0 libsm6 libsnappy1v5
libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtirpc-common libtirpc3t64
libtk8.6 libtool libtsan2 libubsan1 libunwind8 libvulkan1 libwayland-server0
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6
libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6
libxext6 libxfixes3 libxfont2 libxft2 libxkbfile1 libxmu6 libxmuu1 libxpm4
libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64
libxxf86vm1 libz3-4 linux-libc-dev m4 media-types mesa-libgallium meson
ninja-build pkgconf pkgconf-bin po-debconf procps pybuild-plugin-pyproject
python-matplotlib-data python-tables-data python3 python3-all
python3-all-dev python3-appdirs python3-attr python3-autocommand
python3-brotli python3-build python3-contourpy python3-cpuinfo
python3-cycler python3-dateutil python3-decorator python3-deepdiff
python3-dev python3-fonttools python3-fs python3-h5py python3-h5py-serial
python3-inflect python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-joblib python3-jsonpickle
python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
python3-mesonpy python3-minimal python3-more-itertools python3-mpmath
python3-nibabel python3-numexpr python3-numpy python3-ordered-set
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pyproject-hooks python3-pyproject-metadata python3-pytest
python3-scipy python3-setuptools python3-setuptools-scm python3-six
python3-sklearn python3-sklearn-lib python3-sympy python3-tables
python3-tables-lib python3-threadpoolctl python3-tk python3-toml
python3-tqdm python3-trx-python python3-typeguard python3-typing-extensions
python3-tz python3-ufolib2 python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.12-tk python3.13 python3.13-dev
python3.13-minimal python3.13-tk rpcsvc-proto tk8.6-blt2.5 unicode-data
x11-common x11-xkb-utils xauth xkb-data xserver-common xvfb zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc
libjs-jquery-ui-docs liblcms2-utils lm-sensors libstdc++-14-doc tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
python3-doc python3-venv python-attr-doc python3-pip python-build-doc
python-cycler-doc python-h5py-doc python-installer-doc python-joblib-doc
python-jsonpickle-doc python3-simplejson python-lxml-doc cm-super-minimal
dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3
librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi
python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
python-nibabel-doc gfortran python-numpy-doc python-pandas-doc
python3-statsmodels python-pil-doc python-pyparsing-doc python-scipy-doc
python-setuptools-doc python3-dap python-sklearn-doc texlive-fonts-extra
python-sympy-doc python3-netcdf4 python-tables-doc vitables tix
python3-tk-dbg python3.12-venv python3.12-doc binfmt-support python3.13-venv
python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl psmisc
linux-sysctl-defaults python3-clevercsv python3-simplejson python3-psutil
python3-bs4 python3-cssselect python3-html5lib patchelf python3-pydicom
python3-fuse python3-bottleneck python3-odf python3-openpyxl python3-jinja2
python3-olefile python3-pygments isympy-common python3-dipy xfonts-base
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libaec0 libasan8 libblas3
libblosc1 libblosc2-4 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libcurl4t64 libdebhelper-perl libdeflate0 libdrm-amdgpu1 libdrm-common
libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libexpat1-dev
libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfontenc1
libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgfortran5 libgl1
libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3
libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libice6
libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblcms2-2 liblerc4 libllvm19 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6
libnsl2 libopenjp2-7 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0
libraqm0 libsensors-config libsensors5 libsharpyuv0 libsm6 libsnappy1v5
libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtirpc-common libtirpc3t64
libtk8.6 libtool libtsan2 libubsan1 libunwind8 libvulkan1 libwayland-server0
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6
libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6
libxext6 libxfixes3 libxfont2 libxft2 libxkbfile1 libxmu6 libxmuu1 libxpm4
libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64
libxxf86vm1 libz3-4 linux-libc-dev m4 media-types mesa-libgallium meson
ninja-build pkgconf pkgconf-bin po-debconf procps pybuild-plugin-pyproject
python-matplotlib-data python-tables-data python3 python3-all
python3-all-dev python3-appdirs python3-attr python3-autocommand
python3-brotli python3-build python3-contourpy python3-cpuinfo
python3-cycler python3-dateutil python3-decorator python3-deepdiff
python3-dev python3-fonttools python3-fs python3-h5py python3-h5py-serial
python3-inflect python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-joblib python3-jsonpickle
python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
python3-mesonpy python3-minimal python3-more-itertools python3-mpmath
python3-nibabel python3-numexpr python3-numpy python3-ordered-set
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pyproject-hooks python3-pyproject-metadata python3-pytest
python3-scipy python3-setuptools python3-setuptools-scm python3-six
python3-sklearn python3-sklearn-lib python3-sympy python3-tables
python3-tables-lib python3-threadpoolctl python3-tk python3-toml
python3-tqdm python3-trx-python python3-typeguard python3-typing-extensions
python3-tz python3-ufolib2 python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.12-tk python3.13 python3.13-dev
python3.13-minimal python3.13-tk rpcsvc-proto
sbuild-build-depends-main-dummy tk8.6-blt2.5 unicode-data x11-common
x11-xkb-utils xauth xkb-data xserver-common xvfb zlib1g-dev
0 upgraded, 262 newly installed, 0 to remove and 0 not upgraded.
Need to get 176 MB/226 MB of archives.
After this operation, 1051 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1052 B]
Get:2 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:6 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:7 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:11 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python-matplotlib-data 3.8.3-3+bootstrap1 [2731 kB]
Get:12 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:13 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:14 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:15 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:21 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-6 [872 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2 [143 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.7-1 [328 kB]
Get:43 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-scipy 1.13.1-5+nocheck1 [18.1 MB]
Get:44 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB]
Get:45 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-h5py-serial 3.11.0-5+debusine1 [1237 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:50 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-pil 10.4.0-1+debusine1 [498 kB]
Get:51 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-pil.imagetk 10.4.0-1+debusine1 [79.9 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B]
Get:56 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.2-1 [2424 kB]
Get:58 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-matplotlib 3.8.3-3+bootstrap1 [5583 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-6 [9165 kB]
Get:66 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-pandas-lib 2.2.3+dfsg-3+debusine1 [6023 kB]
Get:67 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-pandas 2.2.3+dfsg-3+debusine1 [3091 kB]
Get:68 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-sklearn-lib 1.4.2+dfsg-6+debusine1 [5386 kB]
Get:69 file:/<<BUILDDIR>>/resolver-9dHhmB/apt_archive ./ python3-tables-lib 3.10.1-1+debusine1 [623 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-6 [1280 B]
Get:71 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:72 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:73 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-6 [42.3 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-6 [24.1 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-6 [2578 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-6 [1162 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-6 [2386 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-6 [1039 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-6 [1442 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-6 [2364 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-6 [17.7 MB]
Get:82 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-6 [515 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:84 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:85 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-6 [2265 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-6 [10.1 MB]
Get:87 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-6 [19.9 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:89 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:90 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:91 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:96 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.191-2 [188 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libsnappy1v5 arm64 1.2.1-1 [28.4 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libblosc1 arm64 1.21.5+ds-1+b1 [39.0 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libblosc2-4 arm64 2.15.1+ds-1 [165 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libdrm-common all 2.4.123-1 [8084 B]
Get:123 http://deb.debian.org/debian sid/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libwayland-server0 arm64 1.23.0-1 [33.1 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libxcb-randr0 arm64 1.17.0-2 [116 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libglapi-mesa arm64 24.2.4-1 [48.2 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 libllvm19 arm64 1:19.1.1-1 [23.3 MB]
Get:135 http://deb.debian.org/debian sid/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libsensors5 arm64 1:3.6.0-10 [34.0 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libx11-xcb1 arm64 2:1.8.7-1+b1 [232 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [107 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [107 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 libxcb-present0 arm64 1.17.0-2 [105 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 libxcb-sync1 arm64 1.17.0-2 [109 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [109 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libxshmfence1 arm64 1.3-1+b1 [9080 B]
Get:144 http://deb.debian.org/debian sid/main arm64 mesa-libgallium arm64 24.2.4-1 [7681 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 libgbm1 arm64 24.2.4-1 [42.0 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-6 [361 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 libglvnd0 arm64 1.7.0-1+b1 [41.7 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 libxcb-glx0 arm64 1.17.0-2 [122 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB]
Get:150 http://deb.debian.org/debian sid/main arm64 libxfixes3 arm64 1:6.0.0-2+b1 [20.5 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 libvulkan1 arm64 1.3.290.0-1 [122 kB]
Get:153 http://deb.debian.org/debian sid/main arm64 libgl1-mesa-dri arm64 24.2.4-1 [43.5 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 libglx-mesa0 arm64 24.2.4-1 [152 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 libglx0 arm64 1.7.0-1+b1 [31.0 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 libgl1 arm64 1.7.0-1+b1 [90.9 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 libharfbuzz0b arm64 9.0.0-1 [441 kB]
Get:159 http://deb.debian.org/debian sid/main arm64 libsz2 arm64 1.1.3-1 [7664 B]
Get:160 http://deb.debian.org/debian sid/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:169 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB]
Get:174 http://deb.debian.org/debian sid/main arm64 liblzf1 arm64 3.6-4+b1 [10.3 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB]
Get:176 http://deb.debian.org/debian sid/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB]
Get:177 http://deb.debian.org/debian sid/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB]
Get:178 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:179 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:180 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:181 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:182 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:183 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:184 http://deb.debian.org/debian sid/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB]
Get:185 http://deb.debian.org/debian sid/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB]
Get:186 http://deb.debian.org/debian sid/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB]
Get:187 http://deb.debian.org/debian sid/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB]
Get:188 http://deb.debian.org/debian sid/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB]
Get:189 http://deb.debian.org/debian sid/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get:190 http://deb.debian.org/debian sid/main arm64 libunwind8 arm64 1.6.2-3.1 [47.7 kB]
Get:191 http://deb.debian.org/debian sid/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB]
Get:192 http://deb.debian.org/debian sid/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB]
Get:193 http://deb.debian.org/debian sid/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB]
Get:194 http://deb.debian.org/debian sid/main arm64 libxmu6 arm64 2:1.1.3-3+b2 [55.5 kB]
Get:195 http://deb.debian.org/debian sid/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB]
Get:196 http://deb.debian.org/debian sid/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB]
Get:197 http://deb.debian.org/debian sid/main arm64 libxfont2 arm64 1:2.0.6-1+b1 [123 kB]
Get:198 http://deb.debian.org/debian sid/main arm64 libxkbfile1 arm64 1:1.1.0-1+b1 [72.3 kB]
Get:199 http://deb.debian.org/debian sid/main arm64 libxmuu1 arm64 2:1.1.3-3+b2 [22.0 kB]
Get:200 http://deb.debian.org/debian sid/main arm64 libxrandr2 arm64 2:1.5.4-1 [35.7 kB]
Get:201 http://deb.debian.org/debian sid/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB]
Get:202 http://deb.debian.org/debian sid/main arm64 ninja-build arm64 1.12.1-1 [128 kB]
Get:203 http://deb.debian.org/debian sid/main arm64 meson all 1.5.2-2 [621 kB]
Get:204 http://deb.debian.org/debian sid/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB]
Get:205 http://deb.debian.org/debian sid/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB]
Get:206 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:207 http://deb.debian.org/debian sid/main arm64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get:208 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:209 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:210 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:211 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:212 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:213 http://deb.debian.org/debian sid/main arm64 python-tables-data all 3.10.1-1 [49.5 kB]
Get:214 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:215 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:216 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:217 http://deb.debian.org/debian sid/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB]
Get:218 http://deb.debian.org/debian sid/main arm64 python3-attr all 24.2.0-1 [68.4 kB]
Get:219 http://deb.debian.org/debian sid/main arm64 python3-brotli arm64 1.1.0-2+b4 [301 kB]
Get:220 http://deb.debian.org/debian sid/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB]
Get:221 http://deb.debian.org/debian sid/main arm64 python3-cpuinfo all 9.0.0+git20221119-2 [23.4 kB]
Get:222 http://deb.debian.org/debian sid/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get:223 http://deb.debian.org/debian sid/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get:224 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:225 http://deb.debian.org/debian sid/main arm64 python3-jsonpickle all 3.3.0+dfsg-1 [44.1 kB]
Get:226 http://deb.debian.org/debian sid/main arm64 python3-ordered-set all 4.1.0-1 [9628 B]
Get:227 http://deb.debian.org/debian sid/main arm64 python3-deepdiff all 6.7.1-2 [65.6 kB]
Get:228 http://deb.debian.org/debian sid/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:229 http://deb.debian.org/debian sid/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get:230 http://deb.debian.org/debian sid/main arm64 python3-sympy all 1.13.3-1 [4147 kB]
Get:231 http://deb.debian.org/debian sid/main arm64 python3-tz all 2024.1-2 [30.9 kB]
Get:232 http://deb.debian.org/debian sid/main arm64 python3-six all 1.16.0-7 [16.4 kB]
Get:233 http://deb.debian.org/debian sid/main arm64 python3-fs all 2.4.16-4 [95.4 kB]
Get:234 http://deb.debian.org/debian sid/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB]
Get:235 http://deb.debian.org/debian sid/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB]
Get:236 http://deb.debian.org/debian sid/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get:237 http://deb.debian.org/debian sid/main arm64 python3-fonttools arm64 4.46.0-1+b1 [1319 kB]
Get:238 http://deb.debian.org/debian sid/main arm64 python3-h5py all 3.11.0-5 [14.7 kB]
Get:239 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:240 http://deb.debian.org/debian sid/main arm64 python3-joblib all 1.3.2-3 [216 kB]
Get:241 http://deb.debian.org/debian sid/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB]
Get:242 http://deb.debian.org/debian sid/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB]
Get:243 http://deb.debian.org/debian sid/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB]
Get:244 http://deb.debian.org/debian sid/main arm64 python3-tk arm64 3.12.6-1 [9428 B]
Get:245 http://deb.debian.org/debian sid/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get:246 http://deb.debian.org/debian sid/main arm64 python3-pyproject-metadata all 0.8.0-1 [9648 B]
Get:247 http://deb.debian.org/debian sid/main arm64 python3-mesonpy all 0.16.0-2 [120 kB]
Get:248 http://deb.debian.org/debian sid/main arm64 python3-nibabel all 5.2.1-2 [2659 kB]
Get:249 http://deb.debian.org/debian sid/main arm64 python3-numexpr arm64 2.10.1-2+b1 [118 kB]
Get:250 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:251 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
Get:252 http://deb.debian.org/debian sid/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB]
Get:253 http://deb.debian.org/debian sid/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:254 http://deb.debian.org/debian sid/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB]
Get:255 http://deb.debian.org/debian sid/main arm64 python3-tables all 3.10.1-1 [355 kB]
Get:256 http://deb.debian.org/debian sid/main arm64 python3-tqdm all 4.66.5-1 [90.1 kB]
Get:257 http://deb.debian.org/debian sid/main arm64 python3-trx-python all 0.3-1 [40.2 kB]
Get:258 http://deb.debian.org/debian sid/main arm64 x11-xkb-utils arm64 7.7+9 [149 kB]
Get:259 http://deb.debian.org/debian sid/main arm64 xauth arm64 1:1.1.2-1 [35.5 kB]
Get:260 http://deb.debian.org/debian sid/main arm64 xkb-data all 2.42-1 [790 kB]
Get:261 http://deb.debian.org/debian sid/main arm64 xserver-common all 2:21.1.13-2 [2393 kB]
Get:262 http://deb.debian.org/debian sid/main arm64 xvfb arm64 2:21.1.13-2 [3106 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 176 MB in 4s (48.8 MB/s)
Selecting previously unselected package libpython3.12-minimal:arm64.
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Unpacking libpython3.12-minimal:arm64 (3.12.7-1) ...
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Unpacking libexpat1:arm64 (2.6.3-1) ...
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Unpacking python3.12-minimal (3.12.7-1) ...
Setting up libpython3.12-minimal:arm64 (3.12.7-1) ...
Setting up libexpat1:arm64 (2.6.3-1) ...
Setting up python3.12-minimal (3.12.7-1) ...
Selecting previously unselected package python3-minimal.
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Unpacking python3-minimal (3.12.6-1+debusine1) ...
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Unpacking media-types (10.1.0) ...
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Unpacking libncursesw6:arm64 (6.5-2) ...
Selecting previously unselected package libtirpc-common.
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Unpacking libtirpc-common (1.3.4+ds-1.3) ...
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ...
Selecting previously unselected package libnsl2:arm64.
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Unpacking libnsl2:arm64 (1.3.0-3+b2) ...
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Unpacking libpython3.12-stdlib:arm64 (3.12.7-1) ...
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Unpacking python3.12 (3.12.7-1) ...
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Unpacking libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
Setting up python3-minimal (3.12.6-1+debusine1) ...
Selecting previously unselected package python3.
(Reading database ... 17707 files and directories currently installed.)
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Unpacking python3 (3.12.6-1+debusine1) ...
Selecting previously unselected package libpython3.13-minimal:arm64.
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Unpacking libpython3.13-minimal:arm64 (3.13.0-1) ...
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Unpacking python3.13-minimal (3.13.0-1) ...
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Unpacking libproc2-0:arm64 (2:4.0.4-6) ...
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Unpacking procps (2:4.0.4-6) ...
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Unpacking m4 (1.4.19-4) ...
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Unpacking autoconf (2.72-3) ...
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Unpacking autotools-dev (20220109.1) ...
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Unpacking automake (1:1.16.5-1.3) ...
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Unpacking autopoint (0.22.5-2) ...
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Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ...
Selecting previously unselected package libpng16-16t64:arm64.
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Unpacking libpng16-16t64:arm64 (1.6.44-2) ...
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Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ...
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Unpacking fonts-dejavu-mono (2.37-8) ...
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Unpacking fontconfig-config (2.15.0-1.1) ...
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Unpacking libfontconfig1:arm64 (2.15.0-1.1) ...
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Unpacking libxau6:arm64 (1:1.0.9-1+b1) ...
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Unpacking libxdmcp6:arm64 (1:1.1.2-3+b1) ...
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Unpacking libxcb1:arm64 (1.17.0-2) ...
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Unpacking libx11-data (2:1.8.7-1) ...
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Unpacking libx11-6:arm64 (2:1.8.7-1+b1) ...
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Unpacking libxrender1:arm64 (1:0.9.10-1.1+b1) ...
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Unpacking libxft2:arm64 (2.3.6-1+b1) ...
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Unpacking libxext6:arm64 (2:1.3.4-1+b1) ...
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Unpacking libxss1:arm64 (1:1.2.3-1+b1) ...
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invoke-rc.d: could not determine current runlevel
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Setting up python3-dev (3.12.6-1+debusine1) ...
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Setting up build-essential (12.12) ...
Setting up xserver-common (2:21.1.13-2) ...
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Setting up python3-matplotlib (3.8.3-3+bootstrap1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.40-3) ...
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-6 gcc-14_14.2.0-6 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-6 libstdc++6_14.2.0-6 linux-libc-dev_6.11.2-1
Package versions: appstream_1.0.3-1 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 blt_2.5.3+dfsg-7 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.2.0-1 cpp-14_14.2.0-6 cpp-14-aarch64-linux-gnu_14.2.0-6 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.4.2.1-1 g++_4:14.2.0-1 g++-14_14.2.0-6 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: dipy
Binary: python3-dipy, python3-dipy-lib, python-dipy-doc
Architecture: any all
Version: 1.9.0-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Yaroslav Halchenko <debian@onerussian.com>, Michael Hanke <mih@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://dipy.org
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/dipy
Vcs-Git: https://salsa.debian.org/med-team/dipy.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: python3-all, python3-matplotlib, python3-nibabel, python3-pandas, python3-pytest, python3-sklearn, python3-tables, python3-vtk9, xauth, xvfb
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev:native, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py <!nocheck> <!nodoc>, python3-matplotlib <!nocheck>, python3-nibabel <!nocheck> <!nodoc>, python3-pil.imagetk <!nocheck>, python3-pytest <!nocheck>, python3-pandas [!mips64el] <!nocheck>, python3-tables [!s390x] <!nocheck>, python3-tk <!nocheck>, python3-trx-python <!nocheck> <!nodoc>, python3-sklearn <!nocheck>, python3-tqdm <!nocheck> <!nodoc>, xvfb <!nocheck>, xauth <!nocheck>
Build-Depends-Indep: python3-sphinx <!nodoc>, python3-numpydoc <!nodoc>, python3-skimage <!nodoc>, python3-sphinx-design <!nodoc>, python3-doc <!nodoc>
Package-List:
python-dipy-doc deb doc optional arch=all
python3-dipy deb python optional arch=all
python3-dipy-lib deb python optional arch=any
Checksums-Sha1:
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Files:
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056f6702b7a1bc9cd1a37c9fb0cfaf3e 24260 dipy_1.9.0-8.debian.tar.xz
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gpgv: Signature made Tue Sep 24 13:17:00 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./dipy_1.9.0-8.dsc: no acceptable signature found
dpkg-source: info: extracting dipy in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dipy_1.9.0.orig.tar.gz
dpkg-source: info: unpacking dipy_1.9.0-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying deb_no_sources_for_docs
dpkg-source: info: applying skip-tests-needing-internet.patch
dpkg-source: info: applying fix-i386.patch
dpkg-source: info: applying skip_wall-clock_test.patch
dpkg-source: info: applying no-network.patch
dpkg-source: info: applying relay_comparison.patch
dpkg-source: info: applying sphinx-default.patch
dpkg-source: info: applying fix-privacy-breaches.patch
dpkg-source: info: applying pytest-8.patch
dpkg-source: info: applying 0011-Python-3.13-Fix-tests-for-next-Python-release-3210.patch
dpkg-source: info: applying 0012-bf-fix-big-endian-compatibility.patch
dpkg-source: info: applying improve-fibonacci_sphere-reliability
dpkg-source: info: applying syntax_warnings.patch
dpkg-source: info: applying python3
dpkg-source: info: applying tests_ignore_duration
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.9.0-8+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package dipy
dpkg-buildpackage: info: source version 1.9.0-8+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean || true
rm -rf .pybuild __pycache__
find dipy -name "*\.c" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules execute_before_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf build doc-stamp
/usr/bin/make -C doc clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
rm -rf reference/*.rst
rm -rf reference_cmd/*.rst
rm -rf examples_revamped
cd examples_built && find . -not -name "README" -not -name ".gitignore" -exec rm -rfd {} \; || true
rm: refusing to remove '.' or '..' directory: skipping '.'
rm -rf _build/*
rm *-stamp
rm: cannot remove '*-stamp': No such file or directory
make[2]: [Makefile:32: clean] Error 1 (ignored)
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chmod 0644 doc/examples/*.py
dh_auto_build
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_dipy --config-setting compile-args=--verbose --config-setting setup-args=--wrap-mode=nodownload --config-setting setup-args=--prefix=/usr --config-setting setup-args=--sysconfdir=/etc --config-setting setup-args=--localstatedir=/var --config-setting setup-args=--libdir=lib/aarch64-linux-gnu
* Building wheel...
+ meson setup /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --wrap-mode=nodownload --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --native-file=/<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/meson-python-native-file.ini
The Meson build system
Version: 1.5.2
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf
Build type: native build
Project name: dipy
Project version: 1.9.0
C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-6) 14.2.0")
C linker for the host machine: cc ld.bfd 2.43.1
C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-6) 14.2.0")
C++ linker for the host machine: c++ ld.bfd 2.43.1
Cython compiler for the host machine: cython (cython 3.0.11)
Host machine cpu family: aarch64
Host machine cpu: aarch64
Program python found: YES (/usr/bin/python3.13)
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Run-time dependency python found: YES 3.13
Program cython found: YES (/usr/bin/cython)
Library m found: YES
Compiler for C supports arguments -Wno-maybe-uninitialized: YES
Compiler for C supports arguments -Wno-discarded-qualifiers: YES
Compiler for C supports arguments -Wno-empty-body: YES
Compiler for C supports arguments -Wno-implicit-function-declaration: YES
Compiler for C supports arguments -Wno-parentheses: YES
Compiler for C supports arguments -Wno-switch: YES
Compiler for C supports arguments -Wno-unused-label: YES
Compiler for C supports arguments -Wno-unused-variable: YES
Compiler for C++ supports arguments -Wno-cpp: YES
Compiler for C++ supports arguments -Wno-deprecated-declarations: YES
Compiler for C++ supports arguments -Wno-class-memaccess: YES
Compiler for C++ supports arguments -Wno-format-truncation: YES
Compiler for C++ supports arguments -Wno-format-extra-args: YES
Compiler for C++ supports arguments -Wno-format: NO
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES
Compiler for C++ supports arguments -Wno-sign-compare: YES
Compiler for C++ supports arguments -Wno-switch: YES
Compiler for C++ supports arguments -Wno-terminate: YES
Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES
Compiler for C++ supports arguments -Wno-unused-function: YES
Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES
Compiler for C++ supports arguments -Wno-unused-variable: YES
Compiler for C++ supports arguments -Wno-int-in-bool-context: YES
Run-time dependency OpenMP found: YES 4.5
Checking if "SSE intrinsics" compiles: NO
Checking if "ARM NEON intrinsics" compiles: YES
Build targets in project: 45
dipy 1.9.0
User defined options
Native files : /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/meson-python-native-file.ini
buildtype : release
libdir : lib/aarch64-linux-gnu
localstatedir: /var
prefix : /usr
sysconfdir : /etc
wrap_mode : nodownload
b_ndebug : if-release
b_vscrt : md
Found ninja-1.12.1 at /usr/bin/ninja
Generating targets: 0%| | 0/45 eta ?
Writing build.ninja: 0%| | 0/188 eta ?
+ /usr/bin/ninja --verbose
[1/123] /usr/bin/python3.13 ../dipy/../tools/version_utils.py --source-root ..
[2/123] /usr/bin/meson --internal copy ../dipy/../src/cythonutils.h dipy/cythonutils.h
[3/123] /usr/bin/meson --internal copy ../dipy/../src/conditional_omp.h dipy/conditional_omp.h
[4/123] /usr/bin/meson --internal copy ../dipy/../src/safe_openmp.pxd dipy/safe_openmp.pxd
[5/123] /usr/bin/meson --internal copy ../dipy/__init__.py dipy/__init__.py
[6/123] /usr/bin/meson --internal copy ../dipy/../src/dpy_math.h dipy/dpy_math.h
[7/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p/bundlemin.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/bundlemin.pyx
[8/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p/parzenhist.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/parzenhist.pyx
[9/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p/transforms.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/transforms.pyx
[10/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p/expectmax.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/expectmax.pyx
[11/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p/sumsqdiff.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/sumsqdiff.pyx
[12/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p/crosscorr.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/crosscorr.pyx
[13/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p/denspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/denoise/denspeed.pyx
[14/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p/nlmeans_block.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/denoise/nlmeans_block.pyx
[15/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p/enhancement_kernel.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/denoise/enhancement_kernel.pyx
[16/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p/pca_noise_estimate.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/denoise/pca_noise_estimate.pyx
[17/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p/shift_twist_convolution.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/denoise/shift_twist_convolution.pyx
[18/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p/bootstrap_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/direction/bootstrap_direction_getter.pyx
[19/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p/interpolation.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/core/interpolation.pyx
[20/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p/closest_peak_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/direction/closest_peak_direction_getter.pyx
[21/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p/probabilistic_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/direction/probabilistic_direction_getter.pyx
[22/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p/pmf.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/direction/pmf.pyx
[23/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p/eudx_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/reconst/eudx_direction_getter.pyx
[24/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p/ptt_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/direction/ptt_direction_getter.pyx
[25/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p/quick_squash.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/reconst/quick_squash.pyx
[26/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p/vec_val_sum.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/reconst/vec_val_sum.pyx
[27/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p/clustering_algorithms.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/segment/clustering_algorithms.pyx
[28/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p/vector_fields.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/align/vector_fields.pyx
[29/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p/recspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/reconst/recspeed.pyx
[30/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p/cythonutils.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/segment/cythonutils.pyx
[31/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p/clusteringspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/segment/clusteringspeed.pyx
[32/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p/distances.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/distances.pyx
[33/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p/featurespeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/segment/featurespeed.pyx
[34/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p/metricspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/segment/metricspeed.pyx
[35/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p/mrf.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/segment/mrf.pyx
[36/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p/direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/direction_getter.pyx
[37/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p/fbcmeasures.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/fbcmeasures.pyx
[38/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p/localtrack.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/localtrack.pyx
[39/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p/fast_numpy.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/utils/fast_numpy.pyx
[40/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p/streamlinespeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/streamlinespeed.pyx
[41/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p/propspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/propspeed.pyx
[42/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p/vox2track.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/vox2track.pyx
[43/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/stopping_criterion.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/tracking/stopping_criterion.pyx
[44/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p/omp.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/utils/omp.pyx
[45/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p/test_fast_numpy.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy ../dipy/utils/tests/test_fast_numpy.pyx
[46/123] cc -Idipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -MF dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o.d -o dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -c dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p/bundlemin.c
[47/123] cc -Idipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -MF dipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o.d -o dipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -c dipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p/transforms.c
[48/123] cc -Idipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -MF dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o.d -o dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -c dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p/parzenhist.c
[49/123] cc -Idipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -MF dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o.d -o dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -c dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p/expectmax.c
[50/123] cc -Idipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -MF dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o.d -o dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -c dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p/crosscorr.c
[51/123] cc -Idipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -MF dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o.d -o dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -c dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p/sumsqdiff.c
[52/123] cc -Idipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -MF dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o.d -o dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -c dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p/denspeed.c
[53/123] cc -Idipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -MF dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o.d -o dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -c dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p/enhancement_kernel.c
[54/123] cc -Idipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -MF dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o.d -o dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -c dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p/pca_noise_estimate.c
[55/123] cc -Idipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -MF dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o.d -o dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -c dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p/nlmeans_block.c
[56/123] cc -Idipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -MF dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o.d -o dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -c dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p/shift_twist_convolution.c
[57/123] cc -Idipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -MF dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o.d -o dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -c dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p/pmf.c
[58/123] cc -Idipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p -Idipy/core -I../dipy/core -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -MF dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o.d -o dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -c dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p/interpolation.c
[59/123] cc -Idipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -MF dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o.d -o dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -c dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p/closest_peak_direction_getter.c
[60/123] cc -Idipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -MF dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o.d -o dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -c dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p/bootstrap_direction_getter.c
[61/123] cc -Idipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -MF dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o.d -o dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -c dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p/probabilistic_direction_getter.c
[62/123] cc -Idipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -MF dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o.d -o dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -c dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p/eudx_direction_getter.c
[63/123] cc -Idipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -MF dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o.d -o dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -c dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p/quick_squash.c
[64/123] cc -Idipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -MF dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o.d -o dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -c dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p/ptt_direction_getter.c
[65/123] cc -Idipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -MF dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o.d -o dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -c dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p/vec_val_sum.c
[66/123] cc -Idipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -MF dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o.d -o dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -c dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p/recspeed.c
[67/123] cc -Idipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -MF dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o.d -o dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -c dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p/cythonutils.c
[68/123] cc -Idipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -MF dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o.d -o dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -c dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p/clustering_algorithms.c
[69/123] cc -Idipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -MF dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o.d -o dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -c dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p/clusteringspeed.c
[70/123] cc -Idipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -MF dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o.d -o dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -c dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p/featurespeed.c
[71/123] cc -Idipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -MF dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o.d -o dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -c dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p/metricspeed.c
[72/123] cc -Idipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -MF dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o.d -o dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -c dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p/direction_getter.c
[73/123] cc -Idipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -MF dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o.d -o dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -c dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p/mrf.c
[74/123] cc -Idipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -MF dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o.d -o dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -c dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p/fbcmeasures.c
[75/123] cc -Idipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -MF dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o.d -o dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -c dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p/propspeed.c
[76/123] cc -Idipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -MF dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p/meson-generated_distances.c.o.d -o dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -c dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p/distances.c
[77/123] cc -Idipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -MF dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o.d -o dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -c dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p/localtrack.c
[78/123] cc -Idipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -MF dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o.d -o dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -c dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p/fast_numpy.c
[79/123] cc -Idipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -MF dipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p/meson-generated_omp.c.o.d -o dipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -c dipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p/omp.c
[80/123] cc -o dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[81/123] cc -o dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[82/123] cc -o dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[83/123] cc -o dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[84/123] cc -o dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[85/123] cc -o dipy/align/transforms.cpython-313-aarch64-linux-gnu.so dipy/align/transforms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[86/123] cc -o dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[87/123] cc -o dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[88/123] cc -o dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so dipy/denoise/enhancement_kernel.cpython-313-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[89/123] cc -o dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so dipy/denoise/nlmeans_block.cpython-313-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[90/123] cc -o dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so dipy/denoise/pca_noise_estimate.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[91/123] cc -o dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so dipy/denoise/shift_twist_convolution.cpython-313-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[92/123] cc -o dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so dipy/direction/bootstrap_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[93/123] cc -o dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so dipy/direction/closest_peak_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[94/123] cc -o dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so dipy/direction/pmf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[95/123] cc -o dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so dipy/direction/probabilistic_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[96/123] cc -o dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so dipy/direction/ptt_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[97/123] cc -o dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so dipy/reconst/eudx_direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[98/123] cc -o dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so dipy/reconst/quick_squash.cpython-313-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[99/123] cc -o dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so dipy/reconst/recspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[100/123] cc -o dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so dipy/reconst/vec_val_sum.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[101/123] cc -o dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so dipy/segment/clustering_algorithms.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[102/123] cc -o dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so dipy/segment/clusteringspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[103/123] cc -o dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so dipy/segment/cythonutils.cpython-313-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[104/123] cc -o dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so dipy/segment/featurespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[105/123] cc -o dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so dipy/segment/metricspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[106/123] cc -o dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so dipy/segment/mrf.cpython-313-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[107/123] cc -o dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so dipy/tracking/direction_getter.cpython-313-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[108/123] cc -o dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so dipy/tracking/distances.cpython-313-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[109/123] cc -o dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so dipy/tracking/fbcmeasures.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[110/123] cc -o dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so dipy/tracking/localtrack.cpython-313-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[111/123] cc -o dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so dipy/tracking/propspeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[112/123] cc -o dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so dipy/utils/fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[113/123] cc -o dipy/utils/omp.cpython-313-aarch64-linux-gnu.so dipy/utils/omp.cpython-313-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[114/123] cc -Idipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -MF dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o.d -o dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -c dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/stopping_criterion.c
In file included from /usr/include/string.h:548,
from /usr/include/python3.13/Python.h:39,
from dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/stopping_criterion.c:16:
In function ‘memcpy’,
inlined from ‘__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state’ at dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/stopping_criterion.c:29890:3:
/usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘*(long unsigned int *)(&__pyx_t_1[0])’ may be used uninitialized [-Wmaybe-uninitialized]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/stopping_criterion.c: In function ‘__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state’:
dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/stopping_criterion.c:29864:10: note: ‘*(long unsigned int *)(&__pyx_t_1[0])’ was declared here
29864 | double __pyx_t_1[1];
| ^~~~~~~~~
[115/123] cc -o dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so dipy/tracking/stopping_criterion.cpython-313-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[116/123] cc -Idipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -MF dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o.d -o dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -c dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p/vox2track.c
[117/123] cc -o dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so dipy/tracking/vox2track.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[118/123] cc -Idipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p -Idipy/utils/tests -I../dipy/utils/tests -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -MF dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o.d -o dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -c dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p/test_fast_numpy.c
[119/123] cc -o dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so dipy/utils/tests/test_fast_numpy.cpython-313-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[120/123] cc -Idipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -MF dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o.d -o dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -c dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p/streamlinespeed.c
[121/123] cc -o dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so dipy/tracking/streamlinespeed.cpython-313-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[122/123] cc -Idipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.13 -I/usr/include/aarch64-linux-gnu/python3.13 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o -MF dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o.d -o dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o -c dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p/vector_fields.c
[123/123] cc -o dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[1/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/version.py
[2/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/bundlemin.cpython-313-aarch64-linux-gnu.so
[3/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/crosscorr.cpython-313-aarch64-linux-gnu.so
[4/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/expectmax.cpython-313-aarch64-linux-gnu.so
[5/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/parzenhist.cpython-313-aarch64-linux-gnu.so
[6/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/sumsqdiff.cpython-313-aarch64-linux-gnu.so
[7/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/transforms.cpython-313-aarch64-linux-gnu.so
[8/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/align/vector_fields.cpython-313-aarch64-linux-gnu.so
[9/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/core/interpolation.cpython-313-aarch64-linux-gnu.so
[10/526] /<<PKGBUILDDIR>>/.mesonpy-qqubnvzf/dipy/denoise/denspeed.cpython-313-aarch64-linux-gnu.so
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[240/526] /<<PKGBUILDDIR>>/dipy/reconst/fwdti.py
[241/526] /<<PKGBUILDDIR>>/dipy/reconst/gqi.py
[242/526] /<<PKGBUILDDIR>>/dipy/reconst/ivim.py
[243/526] /<<PKGBUILDDIR>>/dipy/reconst/mapmri.py
[244/526] /<<PKGBUILDDIR>>/dipy/reconst/mcsd.py
[245/526] /<<PKGBUILDDIR>>/dipy/reconst/msdki.py
[246/526] /<<PKGBUILDDIR>>/dipy/reconst/multi_voxel.py
[247/526] /<<PKGBUILDDIR>>/dipy/reconst/odf.py
[248/526] /<<PKGBUILDDIR>>/dipy/reconst/qtdmri.py
[249/526] /<<PKGBUILDDIR>>/dipy/reconst/qti.py
[250/526] /<<PKGBUILDDIR>>/dipy/reconst/rumba.py
[251/526] /<<PKGBUILDDIR>>/dipy/reconst/sfm.py
[252/526] /<<PKGBUILDDIR>>/dipy/reconst/shm.py
[253/526] /<<PKGBUILDDIR>>/dipy/reconst/shore.py
[254/526] /<<PKGBUILDDIR>>/dipy/reconst/utils.py
[255/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/__init__.py
[256/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_cache.py
[257/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_cross_validation.py
[258/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_csdeconv.py
[259/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_cti.py
[260/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dki.py
[261/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dki_micro.py
[262/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dsi.py
[263/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dsi_deconv.py
[264/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dsi_metrics.py
[265/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dti.py
[266/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_eudx_dg.py
[267/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_forecast.py
[268/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_fwdti.py
[269/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_gqi.py
[270/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_ivim.py
[271/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_mapmri.py
[272/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_mcsd.py
[273/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_msdki.py
[274/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_multi_voxel.py
[275/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_odf.py
[276/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_peak_finding.py
[277/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_qtdmri.py
[278/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_qti.py
[279/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_reco_utils.py
[280/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_rumba.py
[281/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_sfm.py
[282/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shm.py
[283/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shore.py
[284/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shore_metrics.py
[285/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shore_odf.py
[286/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_utils.py
[287/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_vec_val_vect.py
[288/526] /<<PKGBUILDDIR>>/dipy/segment/__init__.py
[289/526] /<<PKGBUILDDIR>>/dipy/segment/bundles.py
[290/526] /<<PKGBUILDDIR>>/dipy/segment/clustering.py
[291/526] /<<PKGBUILDDIR>>/dipy/segment/fss.py
[292/526] /<<PKGBUILDDIR>>/dipy/segment/mask.py
[293/526] /<<PKGBUILDDIR>>/dipy/segment/metric.py
[294/526] /<<PKGBUILDDIR>>/dipy/segment/threshold.py
[295/526] /<<PKGBUILDDIR>>/dipy/segment/tissue.py
[296/526] /<<PKGBUILDDIR>>/dipy/segment/tests/__init__.py
[297/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_adjustment.py
[298/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_bundles.py
[299/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_clustering.py
[300/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_feature.py
[301/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_fss.py
[302/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_mask.py
[303/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_metric.py
[304/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_mrf.py
[305/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_qbx.py
[306/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_quickbundles.py
[307/526] /<<PKGBUILDDIR>>/dipy/sims/__init__.py
[308/526] /<<PKGBUILDDIR>>/dipy/sims/phantom.py
[309/526] /<<PKGBUILDDIR>>/dipy/sims/voxel.py
[310/526] /<<PKGBUILDDIR>>/dipy/sims/tests/__init__.py
[311/526] /<<PKGBUILDDIR>>/dipy/sims/tests/test_phantom.py
[312/526] /<<PKGBUILDDIR>>/dipy/sims/tests/test_voxel.py
[313/526] /<<PKGBUILDDIR>>/dipy/stats/__init__.py
[314/526] /<<PKGBUILDDIR>>/dipy/stats/analysis.py
[315/526] /<<PKGBUILDDIR>>/dipy/stats/resampling.py
[316/526] /<<PKGBUILDDIR>>/dipy/stats/tests/__init__.py
[317/526] /<<PKGBUILDDIR>>/dipy/stats/tests/test_analysis.py
[318/526] /<<PKGBUILDDIR>>/dipy/stats/tests/test_resampling.py
[319/526] /<<PKGBUILDDIR>>/dipy/testing/__init__.py
[320/526] /<<PKGBUILDDIR>>/dipy/testing/decorators.py
[321/526] /<<PKGBUILDDIR>>/dipy/testing/memory.py
[322/526] /<<PKGBUILDDIR>>/dipy/testing/spherepoints.py
[323/526] /<<PKGBUILDDIR>>/dipy/testing/tests/__init__.py
[324/526] /<<PKGBUILDDIR>>/dipy/testing/tests/test_decorators.py
[325/526] /<<PKGBUILDDIR>>/dipy/testing/tests/test_memory.py
[326/526] /<<PKGBUILDDIR>>/dipy/testing/tests/test_testing.py
[327/526] /<<PKGBUILDDIR>>/dipy/tests/__init__.py
[328/526] /<<PKGBUILDDIR>>/dipy/tests/scriptrunner.py
[329/526] /<<PKGBUILDDIR>>/dipy/tests/test_scripts.py
[330/526] /<<PKGBUILDDIR>>/dipy/tracking/__init__.py
[331/526] /<<PKGBUILDDIR>>/dipy/tracking/_utils.py
[332/526] /<<PKGBUILDDIR>>/dipy/tracking/learning.py
[333/526] /<<PKGBUILDDIR>>/dipy/tracking/life.py
[334/526] /<<PKGBUILDDIR>>/dipy/tracking/local_tracking.py
[335/526] /<<PKGBUILDDIR>>/dipy/tracking/mesh.py
[336/526] /<<PKGBUILDDIR>>/dipy/tracking/metrics.py
[337/526] /<<PKGBUILDDIR>>/dipy/tracking/streamline.py
[338/526] /<<PKGBUILDDIR>>/dipy/tracking/utils.py
[339/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/__init__.py
[340/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_distances.py
[341/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_fbc.py
[342/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_learning.py
[343/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_life.py
[344/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_mesh.py
[345/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_metrics.py
[346/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_propagation.py
[347/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_stopping_criterion.py
[348/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_streamline.py
[349/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_track_volumes.py
[350/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_tracking.py
[351/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_utils.py
[352/526] /<<PKGBUILDDIR>>/dipy/utils/__init__.py
[353/526] /<<PKGBUILDDIR>>/dipy/utils/arrfuncs.py
[354/526] /<<PKGBUILDDIR>>/dipy/utils/deprecator.py
[355/526] /<<PKGBUILDDIR>>/dipy/utils/multiproc.py
[356/526] /<<PKGBUILDDIR>>/dipy/utils/optpkg.py
[357/526] /<<PKGBUILDDIR>>/dipy/utils/parallel.py
[358/526] /<<PKGBUILDDIR>>/dipy/utils/tractogram.py
[359/526] /<<PKGBUILDDIR>>/dipy/utils/tripwire.py
[360/526] /<<PKGBUILDDIR>>/dipy/utils/volume.py
[361/526] /<<PKGBUILDDIR>>/dipy/utils/tests/__init__.py
[362/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_arrfuncs.py
[363/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_deprecator.py
[364/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_multiproc.py
[365/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_omp.py
[366/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_optpkg.py
[367/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_parallel.py
[368/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_tractogram.py
[369/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_tripwire.py
[370/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_volume.py
[371/526] /<<PKGBUILDDIR>>/dipy/viz/__init__.py
[372/526] /<<PKGBUILDDIR>>/dipy/viz/gmem.py
[373/526] /<<PKGBUILDDIR>>/dipy/viz/panel.py
[374/526] /<<PKGBUILDDIR>>/dipy/viz/plotting.py
[375/526] /<<PKGBUILDDIR>>/dipy/viz/projections.py
[376/526] /<<PKGBUILDDIR>>/dipy/viz/regtools.py
[377/526] /<<PKGBUILDDIR>>/dipy/viz/streamline.py
[378/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/__init__.py
[379/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/app.py
[380/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/util.py
[381/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/__init__.py
[382/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/base.py
[383/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/cluster.py
[384/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/peak.py
[385/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/roi.py
[386/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/slice.py
[387/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/surface.py
[388/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/tests/__init__.py
[389/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/tests/test_base.py
[390/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/__init__.py
[391/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/cluster.py
[392/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/slice.py
[393/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/surface.py
[394/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/peak.py
[395/526] /<<PKGBUILDDIR>>/dipy/viz/tests/__init__.py
[396/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_apps.py
[397/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_fury.py
[398/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_regtools.py
[399/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_streamline.py
[400/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_util.py
[401/526] /<<PKGBUILDDIR>>/dipy/workflows/__init__.py
[402/526] /<<PKGBUILDDIR>>/dipy/workflows/align.py
[403/526] /<<PKGBUILDDIR>>/dipy/workflows/base.py
[404/526] /<<PKGBUILDDIR>>/dipy/workflows/cli.py
[405/526] /<<PKGBUILDDIR>>/dipy/workflows/combined_workflow.py
[406/526] /<<PKGBUILDDIR>>/dipy/workflows/denoise.py
[407/526] /<<PKGBUILDDIR>>/dipy/workflows/docstring_parser.py
[408/526] /<<PKGBUILDDIR>>/dipy/workflows/flow_runner.py
[409/526] /<<PKGBUILDDIR>>/dipy/workflows/io.py
[410/526] /<<PKGBUILDDIR>>/dipy/workflows/mask.py
[411/526] /<<PKGBUILDDIR>>/dipy/workflows/multi_io.py
[412/526] /<<PKGBUILDDIR>>/dipy/workflows/nn.py
[413/526] /<<PKGBUILDDIR>>/dipy/workflows/reconst.py
[414/526] /<<PKGBUILDDIR>>/dipy/workflows/segment.py
[415/526] /<<PKGBUILDDIR>>/dipy/workflows/stats.py
[416/526] /<<PKGBUILDDIR>>/dipy/workflows/tracking.py
[417/526] /<<PKGBUILDDIR>>/dipy/workflows/viz.py
[418/526] /<<PKGBUILDDIR>>/dipy/workflows/workflow.py
[419/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/__init__.py
[420/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_align.py
[421/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_denoise.py
[422/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_docstring_parser.py
[423/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_iap.py
[424/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_io.py
[425/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_masking.py
[426/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_nn.py
[427/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_csa_csd.py
[428/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_dki.py
[429/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_dti.py
[430/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_dsi.py
[431/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_ivim.py
[432/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_mapmri.py
[433/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_rumba.py
[434/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_segment.py
[435/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_stats.py
[436/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_tracking.py
[437/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_viz.py
[438/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_workflow.py
[439/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/workflow_tests_utils.py
[440/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/affine_registration_3d.py
[441/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/affine_registration_masks.py
[442/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/afq_tract_profiles.py
[443/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/brain_extraction_dwi.py
[444/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_assignment_maps.py
[445/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_extraction.py
[446/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_group_registration.py
[447/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_registration.py
[448/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_shape_similarity.py
[449/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundlewarp_registration.py
[450/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/cluster_confidence.py
[451/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/combined_workflow_creation.py
[452/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/contextual_enhancement.py
[453/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_ascm.py
[454/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_gibbs.py
[455/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_localpca.py
[456/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_mppca.py
[457/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_nlmeans.py
[458/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_patch2self.py
[459/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/fast_streamline_search.py
[460/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/fiber_to_bundle_coherence.py
[461/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/gradients_spheres.py
[462/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/histology_resdnn.py
[463/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/kfold_xval.py
[464/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/linear_fascicle_evaluation.py
[465/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/motion_correction.py
[466/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/path_length_map.py
[467/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/piesno.py
[468/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/quick_start.py
[469/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csa.py
[470/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csa_parallel.py
[471/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csd.py
[472/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csd_parallel.py
[473/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_cti.py
[474/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dki.py
[475/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dki_micro.py
[476/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dsi.py
[477/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dsi_metrics.py
[478/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dsid.py
[479/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dti.py
[480/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_forecast.py
[481/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_fwdti.py
[482/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_gqi.py
[483/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_ivim.py
[484/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_mapmri.py
[485/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_mcsd.py
[486/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_msdki.py
[487/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_qtdmri.py
[488/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_qti.py
[489/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_qtiplus.py
[490/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_rumba.py
[491/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_sfm.py
[492/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_sh.py
[493/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_shore.py
[494/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_shore_metrics.py
[495/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/register_binary_fuzzy.py
[496/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reslice_datasets.py
[497/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/restore_dti.py
[498/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_clustering_features.py
[499/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_clustering_metrics.py
[500/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_extending_clustering_framework.py
[501/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_quickbundles.py
[502/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/simulate_dki.py
[503/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/simulate_multi_tensor.py
[504/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/snr_in_cc.py
[505/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_formats.py
[506/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_length.py
[507/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_registration.py
[508/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_tools.py
[509/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/surface_seed.py
[510/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/syn_registration_2d.py
[511/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/syn_registration_3d.py
[512/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tissue_classification.py
[513/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_bootstrap_peaks.py
[514/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_deterministic.py
[515/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_introduction_eudx.py
[516/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_pft.py
[517/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_probabilistic.py
[518/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_ptt.py
[519/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_rumba.py
[520/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_sfm.py
[521/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_stopping_criterion.py
[522/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/viz_advanced.py
[523/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/viz_bundles.py
[524/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/viz_roi_contour.py
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[526/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/workflow_creation.py
Successfully built dipy-1.9.0-cp313-cp313-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_dipy --config-setting compile-args=--verbose --config-setting setup-args=--wrap-mode=nodownload --config-setting setup-args=--prefix=/usr --config-setting setup-args=--sysconfdir=/etc --config-setting setup-args=--localstatedir=/var --config-setting setup-args=--libdir=lib/aarch64-linux-gnu
* Building wheel...
+ meson setup /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --wrap-mode=nodownload --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --native-file=/<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/meson-python-native-file.ini
The Meson build system
Version: 1.5.2
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4
Build type: native build
Project name: dipy
Project version: 1.9.0
C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-6) 14.2.0")
C linker for the host machine: cc ld.bfd 2.43.1
C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-6) 14.2.0")
C++ linker for the host machine: c++ ld.bfd 2.43.1
Cython compiler for the host machine: cython (cython 3.0.11)
Host machine cpu family: aarch64
Host machine cpu: aarch64
Program python found: YES (/usr/bin/python3.12)
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Run-time dependency python found: YES 3.12
Program cython found: YES (/usr/bin/cython)
Library m found: YES
Compiler for C supports arguments -Wno-maybe-uninitialized: YES
Compiler for C supports arguments -Wno-discarded-qualifiers: YES
Compiler for C supports arguments -Wno-empty-body: YES
Compiler for C supports arguments -Wno-implicit-function-declaration: YES
Compiler for C supports arguments -Wno-parentheses: YES
Compiler for C supports arguments -Wno-switch: YES
Compiler for C supports arguments -Wno-unused-label: YES
Compiler for C supports arguments -Wno-unused-variable: YES
Compiler for C++ supports arguments -Wno-cpp: YES
Compiler for C++ supports arguments -Wno-deprecated-declarations: YES
Compiler for C++ supports arguments -Wno-class-memaccess: YES
Compiler for C++ supports arguments -Wno-format-truncation: YES
Compiler for C++ supports arguments -Wno-format-extra-args: YES
Compiler for C++ supports arguments -Wno-format: NO
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES
Compiler for C++ supports arguments -Wno-sign-compare: YES
Compiler for C++ supports arguments -Wno-switch: YES
Compiler for C++ supports arguments -Wno-terminate: YES
Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES
Compiler for C++ supports arguments -Wno-unused-function: YES
Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES
Compiler for C++ supports arguments -Wno-unused-variable: YES
Compiler for C++ supports arguments -Wno-int-in-bool-context: YES
Run-time dependency OpenMP found: YES 4.5
Checking if "SSE intrinsics" compiles: NO
Checking if "ARM NEON intrinsics" compiles: YES
Build targets in project: 45
dipy 1.9.0
User defined options
Native files : /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/meson-python-native-file.ini
buildtype : release
libdir : lib/aarch64-linux-gnu
localstatedir: /var
prefix : /usr
sysconfdir : /etc
wrap_mode : nodownload
b_ndebug : if-release
b_vscrt : md
Found ninja-1.12.1 at /usr/bin/ninja
Generating targets: 0%| | 0/45 eta ?
Writing build.ninja: 0%| | 0/188 eta ?
+ /usr/bin/ninja --verbose
[1/123] /usr/bin/meson --internal copy ../dipy/../src/safe_openmp.pxd dipy/safe_openmp.pxd
[2/123] /usr/bin/meson --internal copy ../dipy/../src/cythonutils.h dipy/cythonutils.h
[3/123] /usr/bin/meson --internal copy ../dipy/../src/conditional_omp.h dipy/conditional_omp.h
[4/123] /usr/bin/python3.12 ../dipy/../tools/version_utils.py --source-root ..
[5/123] /usr/bin/meson --internal copy ../dipy/../src/dpy_math.h dipy/dpy_math.h
[6/123] /usr/bin/meson --internal copy ../dipy/__init__.py dipy/__init__.py
[7/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/bundlemin.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/bundlemin.pyx
[8/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/expectmax.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/expectmax.pyx
[9/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/transforms.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/transforms.pyx
[10/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/parzenhist.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/parzenhist.pyx
[11/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/sumsqdiff.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/sumsqdiff.pyx
[12/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/crosscorr.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/crosscorr.pyx
[13/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/denspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/denoise/denspeed.pyx
[14/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/nlmeans_block.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/denoise/nlmeans_block.pyx
[15/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/enhancement_kernel.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/denoise/enhancement_kernel.pyx
[16/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/shift_twist_convolution.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/denoise/shift_twist_convolution.pyx
[17/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/interpolation.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/core/interpolation.pyx
[18/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/pca_noise_estimate.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/denoise/pca_noise_estimate.pyx
[19/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/bootstrap_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/direction/bootstrap_direction_getter.pyx
[20/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/closest_peak_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/direction/closest_peak_direction_getter.pyx
[21/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/pmf.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/direction/pmf.pyx
[22/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/ptt_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/direction/ptt_direction_getter.pyx
[23/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/probabilistic_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/direction/probabilistic_direction_getter.pyx
[24/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/quick_squash.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/reconst/quick_squash.pyx
[25/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/eudx_direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/reconst/eudx_direction_getter.pyx
[26/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/recspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/reconst/recspeed.pyx
[27/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/clustering_algorithms.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/segment/clustering_algorithms.pyx
[28/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/vec_val_sum.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/reconst/vec_val_sum.pyx
[29/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/cythonutils.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/segment/cythonutils.pyx
[30/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/vector_fields.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/align/vector_fields.pyx
[31/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/mrf.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/segment/mrf.pyx
[32/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/metricspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/segment/metricspeed.pyx
[33/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/featurespeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/segment/featurespeed.pyx
[34/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/distances.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/distances.pyx
[35/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/clusteringspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/segment/clusteringspeed.pyx
[36/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/direction_getter.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/direction_getter.pyx
[37/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/fbcmeasures.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/fbcmeasures.pyx
[38/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/propspeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/propspeed.pyx
[39/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/localtrack.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/localtrack.pyx
[40/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/streamlinespeed.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/streamlinespeed.pyx
[41/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/vox2track.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/vox2track.pyx
[42/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/tracking/stopping_criterion.pyx
[43/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/fast_numpy.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/utils/fast_numpy.pyx
[44/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/omp.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/utils/omp.pyx
[45/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/test_fast_numpy.c --include-dir /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy ../dipy/utils/tests/test_fast_numpy.pyx
[46/123] cc -Idipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -MF dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o.d -o dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -c dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/bundlemin.c
[47/123] cc -Idipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -MF dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o.d -o dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -c dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/transforms.c
[48/123] cc -Idipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -MF dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o.d -o dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -c dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/parzenhist.c
[49/123] cc -Idipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -MF dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o.d -o dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -c dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/expectmax.c
[50/123] cc -Idipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -MF dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o.d -o dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -c dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/sumsqdiff.c
[51/123] cc -Idipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -MF dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o.d -o dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -c dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/crosscorr.c
[52/123] cc -Idipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -MF dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o.d -o dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -c dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/denspeed.c
[53/123] cc -Idipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -MF dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o.d -o dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -c dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/enhancement_kernel.c
[54/123] cc -Idipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -MF dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o.d -o dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -c dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/nlmeans_block.c
[55/123] cc -Idipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -MF dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o.d -o dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -c dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/shift_twist_convolution.c
[56/123] cc -Idipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -MF dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o.d -o dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -c dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/pca_noise_estimate.c
[57/123] cc -Idipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -MF dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o.d -o dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -c dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/closest_peak_direction_getter.c
[58/123] cc -Idipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -MF dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o.d -o dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -c dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/bootstrap_direction_getter.c
[59/123] cc -Idipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p -Idipy/core -I../dipy/core -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -MF dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o.d -o dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -c dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/interpolation.c
[60/123] cc -Idipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -MF dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o.d -o dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -c dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/probabilistic_direction_getter.c
[61/123] cc -Idipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -MF dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o.d -o dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -c dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/pmf.c
[62/123] cc -Idipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -MF dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o.d -o dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -c dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/eudx_direction_getter.c
[63/123] cc -Idipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -MF dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o.d -o dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -c dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/quick_squash.c
[64/123] cc -Idipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -MF dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o.d -o dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -c dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/ptt_direction_getter.c
[65/123] cc -Idipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -MF dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o.d -o dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -c dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/vec_val_sum.c
[66/123] cc -Idipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -MF dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o.d -o dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -c dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/cythonutils.c
[67/123] cc -Idipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -MF dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o.d -o dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -c dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/recspeed.c
[68/123] cc -Idipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -MF dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o.d -o dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -c dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/clustering_algorithms.c
[69/123] cc -Idipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -MF dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o.d -o dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -c dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/clusteringspeed.c
[70/123] cc -Idipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -MF dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o.d -o dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -c dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/featurespeed.c
[71/123] cc -Idipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -MF dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o.d -o dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -c dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/direction_getter.c
[72/123] cc -Idipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -MF dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o.d -o dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -c dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/metricspeed.c
[73/123] cc -Idipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -MF dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o.d -o dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -c dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/mrf.c
[74/123] cc -Idipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -MF dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o.d -o dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -c dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/localtrack.c
[75/123] cc -Idipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -MF dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o.d -o dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -c dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/distances.c
[76/123] cc -Idipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -MF dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o.d -o dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -c dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/propspeed.c
[77/123] cc -Idipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -MF dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o.d -o dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -c dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/fbcmeasures.c
[78/123] cc -Idipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -MF dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o.d -o dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -c dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/fast_numpy.c
[79/123] cc -Idipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -MF dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o.d -o dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -c dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/omp.c
[80/123] cc -o dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[81/123] cc -o dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[82/123] cc -o dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[83/123] cc -o dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[84/123] cc -o dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[85/123] cc -o dipy/align/transforms.cpython-312-aarch64-linux-gnu.so dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[86/123] cc -Idipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -MF dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o.d -o dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -c dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c
In file included from /usr/include/string.h:548,
from /usr/include/python3.12/Python.h:26,
from dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c:16:
In function ‘memcpy’,
inlined from ‘__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state’ at dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c:29890:3:
/usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘*(long unsigned int *)(&__pyx_t_1[0])’ may be used uninitialized [-Wmaybe-uninitialized]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c: In function ‘__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state’:
dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c:29864:10: note: ‘*(long unsigned int *)(&__pyx_t_1[0])’ was declared here
29864 | double __pyx_t_1[1];
| ^~~~~~~~~
[87/123] cc -o dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[88/123] cc -o dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[89/123] cc -o dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[90/123] cc -o dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[91/123] cc -o dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[92/123] cc -o dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[93/123] cc -o dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[94/123] cc -o dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[95/123] cc -o dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[96/123] cc -o dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[97/123] cc -o dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[98/123] cc -o dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[99/123] cc -o dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[100/123] cc -o dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[101/123] cc -o dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[102/123] cc -o dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[103/123] cc -o dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[104/123] cc -o dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[105/123] cc -o dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[106/123] cc -o dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[107/123] cc -o dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[108/123] cc -o dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[109/123] cc -o dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[110/123] cc -o dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[111/123] cc -o dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[112/123] cc -o dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[113/123] cc -o dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[114/123] cc -o dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[115/123] cc -o dipy/utils/omp.cpython-312-aarch64-linux-gnu.so dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[116/123] cc -Idipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -MF dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o.d -o dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -c dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/vox2track.c
[117/123] cc -o dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[118/123] cc -Idipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -MF dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o.d -o dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -c dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/streamlinespeed.c
[119/123] cc -o dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[120/123] cc -Idipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p -Idipy/utils/tests -I../dipy/utils/tests -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -MF dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o.d -o dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -c dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/test_fast_numpy.c
[121/123] cc -o dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[122/123] cc -Idipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o -MF dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o.d -o dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o -c dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/vector_fields.c
[123/123] cc -o dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vector_fields.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
[1/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/version.py
[2/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so
[3/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so
[4/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so
[5/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so
[6/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so
[7/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/transforms.cpython-312-aarch64-linux-gnu.so
[8/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so
[9/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so
[10/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so
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[12/526] /<<PKGBUILDDIR>>/.mesonpy-osv0h_e4/dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so
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[217/526] /<<PKGBUILDDIR>>/dipy/nn/histo_resdnn.py
[218/526] /<<PKGBUILDDIR>>/dipy/nn/model.py
[219/526] /<<PKGBUILDDIR>>/dipy/nn/synb0.py
[220/526] /<<PKGBUILDDIR>>/dipy/nn/utils.py
[221/526] /<<PKGBUILDDIR>>/dipy/nn/tests/__init__.py
[222/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_cnn_1denoiser.py
[223/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_deepn4.py
[224/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_evac.py
[225/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_histo_resdnn.py
[226/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_synb0.py
[227/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_tf.py
[228/526] /<<PKGBUILDDIR>>/dipy/nn/tests/test_utils.py
[229/526] /<<PKGBUILDDIR>>/dipy/reconst/__init__.py
[230/526] /<<PKGBUILDDIR>>/dipy/reconst/base.py
[231/526] /<<PKGBUILDDIR>>/dipy/reconst/cache.py
[232/526] /<<PKGBUILDDIR>>/dipy/reconst/cross_validation.py
[233/526] /<<PKGBUILDDIR>>/dipy/reconst/csdeconv.py
[234/526] /<<PKGBUILDDIR>>/dipy/reconst/cti.py
[235/526] /<<PKGBUILDDIR>>/dipy/reconst/dki_micro.py
[236/526] /<<PKGBUILDDIR>>/dipy/reconst/dki.py
[237/526] /<<PKGBUILDDIR>>/dipy/reconst/dsi.py
[238/526] /<<PKGBUILDDIR>>/dipy/reconst/dti.py
[239/526] /<<PKGBUILDDIR>>/dipy/reconst/forecast.py
[240/526] /<<PKGBUILDDIR>>/dipy/reconst/fwdti.py
[241/526] /<<PKGBUILDDIR>>/dipy/reconst/gqi.py
[242/526] /<<PKGBUILDDIR>>/dipy/reconst/ivim.py
[243/526] /<<PKGBUILDDIR>>/dipy/reconst/mapmri.py
[244/526] /<<PKGBUILDDIR>>/dipy/reconst/mcsd.py
[245/526] /<<PKGBUILDDIR>>/dipy/reconst/msdki.py
[246/526] /<<PKGBUILDDIR>>/dipy/reconst/multi_voxel.py
[247/526] /<<PKGBUILDDIR>>/dipy/reconst/odf.py
[248/526] /<<PKGBUILDDIR>>/dipy/reconst/qtdmri.py
[249/526] /<<PKGBUILDDIR>>/dipy/reconst/qti.py
[250/526] /<<PKGBUILDDIR>>/dipy/reconst/rumba.py
[251/526] /<<PKGBUILDDIR>>/dipy/reconst/sfm.py
[252/526] /<<PKGBUILDDIR>>/dipy/reconst/shm.py
[253/526] /<<PKGBUILDDIR>>/dipy/reconst/shore.py
[254/526] /<<PKGBUILDDIR>>/dipy/reconst/utils.py
[255/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/__init__.py
[256/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_cache.py
[257/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_cross_validation.py
[258/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_csdeconv.py
[259/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_cti.py
[260/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dki.py
[261/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dki_micro.py
[262/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dsi.py
[263/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dsi_deconv.py
[264/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dsi_metrics.py
[265/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_dti.py
[266/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_eudx_dg.py
[267/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_forecast.py
[268/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_fwdti.py
[269/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_gqi.py
[270/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_ivim.py
[271/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_mapmri.py
[272/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_mcsd.py
[273/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_msdki.py
[274/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_multi_voxel.py
[275/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_odf.py
[276/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_peak_finding.py
[277/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_qtdmri.py
[278/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_qti.py
[279/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_reco_utils.py
[280/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_rumba.py
[281/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_sfm.py
[282/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shm.py
[283/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shore.py
[284/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shore_metrics.py
[285/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_shore_odf.py
[286/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_utils.py
[287/526] /<<PKGBUILDDIR>>/dipy/reconst/tests/test_vec_val_vect.py
[288/526] /<<PKGBUILDDIR>>/dipy/segment/__init__.py
[289/526] /<<PKGBUILDDIR>>/dipy/segment/bundles.py
[290/526] /<<PKGBUILDDIR>>/dipy/segment/clustering.py
[291/526] /<<PKGBUILDDIR>>/dipy/segment/fss.py
[292/526] /<<PKGBUILDDIR>>/dipy/segment/mask.py
[293/526] /<<PKGBUILDDIR>>/dipy/segment/metric.py
[294/526] /<<PKGBUILDDIR>>/dipy/segment/threshold.py
[295/526] /<<PKGBUILDDIR>>/dipy/segment/tissue.py
[296/526] /<<PKGBUILDDIR>>/dipy/segment/tests/__init__.py
[297/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_adjustment.py
[298/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_bundles.py
[299/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_clustering.py
[300/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_feature.py
[301/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_fss.py
[302/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_mask.py
[303/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_metric.py
[304/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_mrf.py
[305/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_qbx.py
[306/526] /<<PKGBUILDDIR>>/dipy/segment/tests/test_quickbundles.py
[307/526] /<<PKGBUILDDIR>>/dipy/sims/__init__.py
[308/526] /<<PKGBUILDDIR>>/dipy/sims/phantom.py
[309/526] /<<PKGBUILDDIR>>/dipy/sims/voxel.py
[310/526] /<<PKGBUILDDIR>>/dipy/sims/tests/__init__.py
[311/526] /<<PKGBUILDDIR>>/dipy/sims/tests/test_phantom.py
[312/526] /<<PKGBUILDDIR>>/dipy/sims/tests/test_voxel.py
[313/526] /<<PKGBUILDDIR>>/dipy/stats/__init__.py
[314/526] /<<PKGBUILDDIR>>/dipy/stats/analysis.py
[315/526] /<<PKGBUILDDIR>>/dipy/stats/resampling.py
[316/526] /<<PKGBUILDDIR>>/dipy/stats/tests/__init__.py
[317/526] /<<PKGBUILDDIR>>/dipy/stats/tests/test_analysis.py
[318/526] /<<PKGBUILDDIR>>/dipy/stats/tests/test_resampling.py
[319/526] /<<PKGBUILDDIR>>/dipy/testing/__init__.py
[320/526] /<<PKGBUILDDIR>>/dipy/testing/decorators.py
[321/526] /<<PKGBUILDDIR>>/dipy/testing/memory.py
[322/526] /<<PKGBUILDDIR>>/dipy/testing/spherepoints.py
[323/526] /<<PKGBUILDDIR>>/dipy/testing/tests/__init__.py
[324/526] /<<PKGBUILDDIR>>/dipy/testing/tests/test_decorators.py
[325/526] /<<PKGBUILDDIR>>/dipy/testing/tests/test_memory.py
[326/526] /<<PKGBUILDDIR>>/dipy/testing/tests/test_testing.py
[327/526] /<<PKGBUILDDIR>>/dipy/tests/__init__.py
[328/526] /<<PKGBUILDDIR>>/dipy/tests/scriptrunner.py
[329/526] /<<PKGBUILDDIR>>/dipy/tests/test_scripts.py
[330/526] /<<PKGBUILDDIR>>/dipy/tracking/__init__.py
[331/526] /<<PKGBUILDDIR>>/dipy/tracking/_utils.py
[332/526] /<<PKGBUILDDIR>>/dipy/tracking/learning.py
[333/526] /<<PKGBUILDDIR>>/dipy/tracking/life.py
[334/526] /<<PKGBUILDDIR>>/dipy/tracking/local_tracking.py
[335/526] /<<PKGBUILDDIR>>/dipy/tracking/mesh.py
[336/526] /<<PKGBUILDDIR>>/dipy/tracking/metrics.py
[337/526] /<<PKGBUILDDIR>>/dipy/tracking/streamline.py
[338/526] /<<PKGBUILDDIR>>/dipy/tracking/utils.py
[339/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/__init__.py
[340/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_distances.py
[341/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_fbc.py
[342/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_learning.py
[343/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_life.py
[344/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_mesh.py
[345/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_metrics.py
[346/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_propagation.py
[347/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_stopping_criterion.py
[348/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_streamline.py
[349/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_track_volumes.py
[350/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_tracking.py
[351/526] /<<PKGBUILDDIR>>/dipy/tracking/tests/test_utils.py
[352/526] /<<PKGBUILDDIR>>/dipy/utils/__init__.py
[353/526] /<<PKGBUILDDIR>>/dipy/utils/arrfuncs.py
[354/526] /<<PKGBUILDDIR>>/dipy/utils/deprecator.py
[355/526] /<<PKGBUILDDIR>>/dipy/utils/multiproc.py
[356/526] /<<PKGBUILDDIR>>/dipy/utils/optpkg.py
[357/526] /<<PKGBUILDDIR>>/dipy/utils/parallel.py
[358/526] /<<PKGBUILDDIR>>/dipy/utils/tractogram.py
[359/526] /<<PKGBUILDDIR>>/dipy/utils/tripwire.py
[360/526] /<<PKGBUILDDIR>>/dipy/utils/volume.py
[361/526] /<<PKGBUILDDIR>>/dipy/utils/tests/__init__.py
[362/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_arrfuncs.py
[363/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_deprecator.py
[364/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_multiproc.py
[365/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_omp.py
[366/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_optpkg.py
[367/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_parallel.py
[368/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_tractogram.py
[369/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_tripwire.py
[370/526] /<<PKGBUILDDIR>>/dipy/utils/tests/test_volume.py
[371/526] /<<PKGBUILDDIR>>/dipy/viz/__init__.py
[372/526] /<<PKGBUILDDIR>>/dipy/viz/gmem.py
[373/526] /<<PKGBUILDDIR>>/dipy/viz/panel.py
[374/526] /<<PKGBUILDDIR>>/dipy/viz/plotting.py
[375/526] /<<PKGBUILDDIR>>/dipy/viz/projections.py
[376/526] /<<PKGBUILDDIR>>/dipy/viz/regtools.py
[377/526] /<<PKGBUILDDIR>>/dipy/viz/streamline.py
[378/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/__init__.py
[379/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/app.py
[380/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/util.py
[381/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/__init__.py
[382/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/base.py
[383/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/cluster.py
[384/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/peak.py
[385/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/roi.py
[386/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/slice.py
[387/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/surface.py
[388/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/tests/__init__.py
[389/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/tab/tests/test_base.py
[390/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/__init__.py
[391/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/cluster.py
[392/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/slice.py
[393/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/surface.py
[394/526] /<<PKGBUILDDIR>>/dipy/viz/horizon/visualizer/peak.py
[395/526] /<<PKGBUILDDIR>>/dipy/viz/tests/__init__.py
[396/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_apps.py
[397/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_fury.py
[398/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_regtools.py
[399/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_streamline.py
[400/526] /<<PKGBUILDDIR>>/dipy/viz/tests/test_util.py
[401/526] /<<PKGBUILDDIR>>/dipy/workflows/__init__.py
[402/526] /<<PKGBUILDDIR>>/dipy/workflows/align.py
[403/526] /<<PKGBUILDDIR>>/dipy/workflows/base.py
[404/526] /<<PKGBUILDDIR>>/dipy/workflows/cli.py
[405/526] /<<PKGBUILDDIR>>/dipy/workflows/combined_workflow.py
[406/526] /<<PKGBUILDDIR>>/dipy/workflows/denoise.py
[407/526] /<<PKGBUILDDIR>>/dipy/workflows/docstring_parser.py
[408/526] /<<PKGBUILDDIR>>/dipy/workflows/flow_runner.py
[409/526] /<<PKGBUILDDIR>>/dipy/workflows/io.py
[410/526] /<<PKGBUILDDIR>>/dipy/workflows/mask.py
[411/526] /<<PKGBUILDDIR>>/dipy/workflows/multi_io.py
[412/526] /<<PKGBUILDDIR>>/dipy/workflows/nn.py
[413/526] /<<PKGBUILDDIR>>/dipy/workflows/reconst.py
[414/526] /<<PKGBUILDDIR>>/dipy/workflows/segment.py
[415/526] /<<PKGBUILDDIR>>/dipy/workflows/stats.py
[416/526] /<<PKGBUILDDIR>>/dipy/workflows/tracking.py
[417/526] /<<PKGBUILDDIR>>/dipy/workflows/viz.py
[418/526] /<<PKGBUILDDIR>>/dipy/workflows/workflow.py
[419/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/__init__.py
[420/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_align.py
[421/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_denoise.py
[422/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_docstring_parser.py
[423/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_iap.py
[424/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_io.py
[425/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_masking.py
[426/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_nn.py
[427/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_csa_csd.py
[428/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_dki.py
[429/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_dti.py
[430/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_dsi.py
[431/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_ivim.py
[432/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_mapmri.py
[433/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_reconst_rumba.py
[434/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_segment.py
[435/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_stats.py
[436/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_tracking.py
[437/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_viz.py
[438/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/test_workflow.py
[439/526] /<<PKGBUILDDIR>>/dipy/workflows/tests/workflow_tests_utils.py
[440/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/affine_registration_3d.py
[441/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/affine_registration_masks.py
[442/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/afq_tract_profiles.py
[443/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/brain_extraction_dwi.py
[444/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_assignment_maps.py
[445/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_extraction.py
[446/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_group_registration.py
[447/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_registration.py
[448/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundle_shape_similarity.py
[449/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/bundlewarp_registration.py
[450/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/cluster_confidence.py
[451/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/combined_workflow_creation.py
[452/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/contextual_enhancement.py
[453/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_ascm.py
[454/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_gibbs.py
[455/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_localpca.py
[456/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_mppca.py
[457/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_nlmeans.py
[458/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/denoise_patch2self.py
[459/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/fast_streamline_search.py
[460/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/fiber_to_bundle_coherence.py
[461/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/gradients_spheres.py
[462/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/histology_resdnn.py
[463/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/kfold_xval.py
[464/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/linear_fascicle_evaluation.py
[465/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/motion_correction.py
[466/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/path_length_map.py
[467/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/piesno.py
[468/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/quick_start.py
[469/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csa.py
[470/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csa_parallel.py
[471/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csd.py
[472/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_csd_parallel.py
[473/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_cti.py
[474/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dki.py
[475/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dki_micro.py
[476/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dsi.py
[477/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dsi_metrics.py
[478/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dsid.py
[479/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_dti.py
[480/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_forecast.py
[481/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_fwdti.py
[482/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_gqi.py
[483/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_ivim.py
[484/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_mapmri.py
[485/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_mcsd.py
[486/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_msdki.py
[487/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_qtdmri.py
[488/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_qti.py
[489/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_qtiplus.py
[490/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_rumba.py
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[493/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_shore.py
[494/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reconst_shore_metrics.py
[495/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/register_binary_fuzzy.py
[496/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/reslice_datasets.py
[497/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/restore_dti.py
[498/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_clustering_features.py
[499/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_clustering_metrics.py
[500/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_extending_clustering_framework.py
[501/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/segment_quickbundles.py
[502/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/simulate_dki.py
[503/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/simulate_multi_tensor.py
[504/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/snr_in_cc.py
[505/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_formats.py
[506/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_length.py
[507/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_registration.py
[508/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/streamline_tools.py
[509/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/surface_seed.py
[510/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/syn_registration_2d.py
[511/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/syn_registration_3d.py
[512/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tissue_classification.py
[513/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_bootstrap_peaks.py
[514/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_deterministic.py
[515/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_introduction_eudx.py
[516/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_pft.py
[517/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_probabilistic.py
[518/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_ptt.py
[519/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_rumba.py
[520/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_sfm.py
[521/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/tracking_stopping_criterion.py
[522/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/viz_advanced.py
[523/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/viz_bundles.py
[524/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/viz_roi_contour.py
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[526/526] /<<PKGBUILDDIR>>/dipy/../doc/examples/workflow_creation.py
Successfully built dipy-1.9.0-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
find -name func_coef.nii.gz -print -exec chmod 0644 '{}' ';'
./.pybuild/cpython3_3.13_dipy/build/dipy/data/files/func_coef.nii.gz
./.pybuild/cpython3_3.12_dipy/build/dipy/data/files/func_coef.nii.gz
./dipy/data/files/func_coef.nii.gz
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Do not test just after build, lets install and then test
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
debian/rules execute_after_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
py3versions: no X-Python3-Version in control file, using supported versions
# Prune duplicate LICENSE file
find debian/ -name LICENSE -delete
# Only now lets build docs
# Run tests later on
# cd build to prevent use of local/not-built source tree
set -ex \
; for PYTHON in 3.13 3.12 \
; do PYPKG="/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python$PYTHON/dist-packages" \
; export PYTHONPATH="$PYPKG" \
; echo "I: Running Dipy unittests using $PYTHON" \
; cd "$PYPKG" \
; PATH=/<<PKGBUILDDIR>>/debian/python3-dipy/usr/bin:$PATH \
xvfb-run -a -s "-screen 0 1280x1024x24 -noreset" \
python$PYTHON -m pytest -v -k 'not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py' dipy \
; rm .pytest_cache -rf \
; done
+ PYPKG=/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages
+ export PYTHONPATH=/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages
+ echo I: Running Dipy unittests using 3.13
I: Running Dipy unittests using 3.13
+ cd /<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages
+ PATH=/<<PKGBUILDDIR>>/debian/python3-dipy/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games xvfb-run -a -s -screen 0 1280x1024x24 -noreset python3.13 -m pytest -v -k not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py dipy
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13
cachedir: .pytest_cache
rootdir: /<<PKGBUILDDIR>>
configfile: pyproject.toml
plugins: typeguard-4.3.0
collecting ... collected 1000 items / 9 deselected / 991 selected
dipy/align/tests/test_api.py::test_syn_registration SKIPPED (test ne...) [ 0%]
dipy/align/tests/test_api.py::test_register_dwi_to_template SKIPPED [ 0%]
dipy/align/tests/test_api.py::test_affine_registration SKIPPED (test...) [ 0%]
dipy/align/tests/test_api.py::test_single_transforms SKIPPED (test n...) [ 0%]
dipy/align/tests/test_api.py::test_register_series SKIPPED (test nee...) [ 0%]
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dipy/align/tests/test_imwarp.py::test_coordinate_mapping PASSED [ 4%]
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dipy/align/tests/test_parzenhist.py::test_parzen_joint_histogram PASSED [ 5%]
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dipy/align/tests/test_reslice.py::test_resample PASSED [ 5%]
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dipy/align/tests/test_streamlinear.py::test_rigid_real_bundles PASSED [ 6%]
dipy/align/tests/test_streamlinear.py::test_rigid_partial_real_bundles PASSED [ 6%]
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dipy/align/tests/test_streamlinear.py::test_wrong_num_threads PASSED [ 7%]
dipy/align/tests/test_streamlinear.py::test_get_unique_pairs PASSED [ 7%]
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=================================== FAILURES ===================================
_________________________________ test_reslice _________________________________
def test_reslice():
with TemporaryDirectory() as out_dir:
data_path, _, _ = get_fnames('small_25')
volume = load_nifti_data(data_path)
reslice_flow = ResliceFlow()
> reslice_flow.run(data_path, [1.5, 1.5, 1.5], out_dir=out_dir)
dipy/workflows/tests/test_align.py:34:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/align.py:92: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8cee2d40, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/align.py', line 92, code run>
fnc = <bound method ResliceFlow.run of <dipy.workflows.align.ResliceFlow object at 0xffff8c288ad0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
________________________________ test_slr_flow _________________________________
def test_slr_flow():
with TemporaryDirectory() as out_dir:
data_path = get_fnames('fornix')
fornix = load_tractogram(data_path, 'same',
bbox_valid_check=False).streamlines
f = Streamlines(fornix)
f1 = f.copy()
f1_path = pjoin(out_dir, "f1.trk")
sft = StatefulTractogram(f1, data_path, Space.RASMM)
save_tractogram(sft, f1_path, bbox_valid_check=False)
f2 = f1.copy()
f2._data += np.array([50, 0, 0])
f2_path = pjoin(out_dir, "f2.trk")
sft = StatefulTractogram(f2, data_path, Space.RASMM)
save_tractogram(sft, f2_path, bbox_valid_check=False)
slr_flow = SlrWithQbxFlow(force=True)
> slr_flow.run(f1_path, f2_path)
dipy/workflows/tests/test_align.py:67:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/align.py:189: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xec78f10, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/align.py', line 189, code run>
fnc = <bound method SlrWithQbxFlow.run of <dipy.workflows.align.SlrWithQbxFlow object at 0xffff8c2886e0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
___________________________ test_image_registration ____________________________
pytestconfig = <_pytest.config.Config object at 0xffff9ad0e510>, args = ()
kwargs = {'rng': Generator(PCG64) at 0xFFFF8CF1AEA0}
rng = Generator(PCG64) at 0xFFFF8CF1AEA0, signature = <Signature (rng)>
def _set_random_number_generator_wrapper(pytestconfig, *args, **kwargs):
rng = np.random.default_rng(seed_v)
kwargs['rng'] = rng
signature = inspect.signature(func)
if pytestconfig and 'pytestconfig' in signature.parameters.keys():
output = func(pytestconfig, *args, **kwargs)
else:
> output = func(*args, **kwargs)
dipy/testing/decorators.py:95:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_align.py:229: in test_image_registration
test_com()
dipy/workflows/tests/test_align.py:102: in test_com
image_registration_flow.run(static_image_file,
dipy/workflows/align.py:329: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xf84a250, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/align.py', line 329, code run>
fnc = <bound method ImageRegistrationFlow.run of <dipy.workflows.align.ImageRegistrationFlow object at 0xffff8c288ad0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_________________________ test_apply_affine_transform __________________________
def test_apply_affine_transform():
with TemporaryDirectory() as temp_out_dir:
factors = {
('TRANSLATION', 3): (2.0, None, np.array([2.3, 4.5, 1.7])),
('RIGID', 3): (0.1, None, np.array([0.1, 0.15, -0.11, 2.3, 4.5,
1.7])),
('RIGIDISOSCALING', 3): (0.1, None, np.array([0.1, 0.15, -0.11,
2.3, 4.5, 1.7,
0.8])),
('RIGIDSCALING', 3): (0.1, None, np.array([0.1, 0.15, -0.11, 2.3,
4.5, 1.7, 0.8, 0.9,
1.1])),
('AFFINE', 3): (0.1, None, np.array([0.99, -0.05, 0.03, 1.3,
0.05, 0.99, -0.10, 2.5,
-0.07, 0.10, 0.99, -1.4]))}
image_registration_flow = ImageRegistrationFlow()
apply_trans = ApplyTransformFlow()
for i in factors.keys():
static, moving, static_g2w, moving_g2w, smask, mmask, M = \
setup_random_transform(transform=regtransforms[i],
rfactor=factors[i][0])
stat_file = str(i[0]) + '_static.nii.gz'
mov_file = str(i[0]) + '_moving.nii.gz'
save_nifti(pjoin(temp_out_dir, stat_file), data=static,
affine=static_g2w)
save_nifti(pjoin(temp_out_dir, mov_file), data=moving,
affine=moving_g2w)
static_image_file = pjoin(temp_out_dir,
str(i[0]) + '_static.nii.gz')
moving_image_file = pjoin(temp_out_dir,
str(i[0]) + '_moving.nii.gz')
out_moved = pjoin(temp_out_dir,
str(i[0]) + "_moved.nii.gz")
out_affine = pjoin(temp_out_dir,
str(i[0]) + "_affine.txt")
if str(i[0]) == "TRANSLATION":
transform_type = "trans"
elif str(i[0]) == "RIGIDISOSCALING":
transform_type = "rigid_isoscaling"
elif str(i[0]) == "RIGIDSCALING":
transform_type = "rigid_scaling"
else:
transform_type = str(i[0]).lower()
> image_registration_flow.run(static_image_file, moving_image_file,
transform=transform_type,
out_dir=temp_out_dir,
out_moved=out_moved,
out_affine=out_affine,
level_iters=[1, 1, 1],
save_metric=False)
dipy/workflows/tests/test_align.py:298:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/align.py:329: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xf93abc0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/align.py', line 329, code run>
fnc = <bound method ImageRegistrationFlow.run of <dipy.workflows.align.ImageRegistrationFlow object at 0xffff8ce8e210>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
____________________________ test_motion_correction ____________________________
def test_motion_correction():
data_path, fbvals_path, fbvecs_path = get_fnames('small_64D')
volume = load_nifti_data(data_path)
with TemporaryDirectory() as out_dir:
# Use an abbreviated data-set:
img = nib.load(data_path)
data = img.get_fdata()[..., :10]
nib.save(nib.Nifti1Image(data, img.affine),
os.path.join(out_dir, 'data.nii.gz'))
# Save a subset:
bvals = np.loadtxt(fbvals_path)
bvecs = np.loadtxt(fbvecs_path)
np.savetxt(os.path.join(out_dir, 'bvals.txt'), bvals[:10])
np.savetxt(os.path.join(out_dir, 'bvecs.txt'), bvecs[:10])
motion_correction_flow = MotionCorrectionFlow()
motion_correction_flow._force_overwrite = True
> motion_correction_flow.run(os.path.join(out_dir, 'data.nii.gz'),
os.path.join(out_dir, 'bvals.txt'),
os.path.join(out_dir, 'bvecs.txt'),
out_dir=out_dir)
dipy/workflows/tests/test_align.py:338:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/align.py:758: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8ce793c0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/align.py', line 758, code run>
fnc = <bound method MotionCorrectionFlow.run of <dipy.workflows.align.MotionCorrectionFlow object at 0xffff8c288980>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
__________________________ test_syn_registration_flow __________________________
def test_syn_registration_flow():
moving_data, static_data = get_synthetic_warped_circle(40)
moving_data[..., :10] = 0
moving_data[..., -1:-11:-1] = 0
static_data[..., :10] = 0
static_data[..., -1:-11:-1] = 0
syn_flow = SynRegistrationFlow()
with TemporaryDirectory() as out_dir:
static_img = nib.Nifti1Image(static_data.astype(float), np.eye(4))
fname_static = pjoin(out_dir, 'tmp_static.nii.gz')
nib.save(static_img, fname_static)
moving_img = nib.Nifti1Image(moving_data.astype(float), np.eye(4))
fname_moving = pjoin(out_dir, 'tmp_moving.nii.gz')
nib.save(moving_img, fname_moving)
positional_args = [fname_static, fname_moving]
# Test the cc metric
metric_optional_args = {'metric': 'cc',
'mopt_sigma_diff': 2.0,
'mopt_radius': 4
}
optimizer_optional_args = {'level_iters': [10, 10, 5],
'step_length': 0.25,
'opt_tol': 1e-5,
'inv_iter': 20,
'inv_tol': 1e-3,
'ss_sigma_factor': 0.2
}
all_args = dict(metric_optional_args, **optimizer_optional_args)
> syn_flow.run(*positional_args,
out_dir=out_dir,
**all_args
)
dipy/workflows/tests/test_align.py:384:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/align.py:617: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xfb670f0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/align.py', line 617, code run>
fnc = <bound method SynRegistrationFlow.run of <dipy.workflows.align.SynRegistrationFlow object at 0xffff8c289160>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
______________________________ test_nlmeans_flow _______________________________
def test_nlmeans_flow():
with TemporaryDirectory() as out_dir:
data_path, _, _ = get_fnames()
volume, affine = load_nifti(data_path)
nlmeans_flow = NLMeansFlow()
> nlmeans_flow.run(data_path, out_dir=out_dir)
dipy/workflows/tests/test_denoise.py:30:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/denoise.py:142: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8cef8ca0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/denoise.py', line 142, code run>
fnc = <bound method NLMeansFlow.run of <dipy.workflows.denoise.NLMeansFlow object at 0xffff8c288980>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_____________________________ test_patch2self_flow _____________________________
@needs_sklearn
def test_patch2self_flow():
with TemporaryDirectory() as out_dir:
data_path, fbvals, fbvecs = get_fnames()
patch2self_flow = Patch2SelfFlow()
> patch2self_flow.run(data_path, fbvals, patch_radius=0, out_dir=out_dir)
dipy/workflows/tests/test_denoise.py:49:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/denoise.py:78: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8d1bac00, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/denoise.py', line 78, code run>
fnc = <bound method Patch2SelfFlow.run of <dipy.workflows.denoise.Patch2SelfFlow object at 0xffff8c288ad0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
________________________________ test_lpca_flow ________________________________
def test_lpca_flow():
with TemporaryDirectory() as out_dir:
data_path, fbvals, fbvecs = get_fnames()
lpca_flow = LPCAFlow()
> lpca_flow.run(data_path, fbvals, fbvecs, out_dir=out_dir)
dipy/workflows/tests/test_denoise.py:59:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/denoise.py:240: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8ce7a400, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/denoise.py', line 240, code run>
fnc = <bound method LPCAFlow.run of <dipy.workflows.denoise.LPCAFlow object at 0xffff8c2892b0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_______________________________ test_mppca_flow ________________________________
pytestconfig = <_pytest.config.Config object at 0xffff9ad0e510>, args = ()
kwargs = {'rng': Generator(PCG64) at 0xFFFF8CF0DA80}
rng = Generator(PCG64) at 0xFFFF8CF0DA80, signature = <Signature (rng)>
def _set_random_number_generator_wrapper(pytestconfig, *args, **kwargs):
rng = np.random.default_rng(seed_v)
kwargs['rng'] = rng
signature = inspect.signature(func)
if pytestconfig and 'pytestconfig' in signature.parameters.keys():
output = func(pytestconfig, *args, **kwargs)
else:
> output = func(*args, **kwargs)
dipy/testing/decorators.py:95:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_denoise.py:72: in test_mppca_flow
mppca_flow.run(data_path, out_dir=out_dir)
dipy/workflows/denoise.py:312: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8cef8f60, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/denoise.py', line 312, code run>
fnc = <bound method MPPCAFlow.run of <dipy.workflows.denoise.MPPCAFlow object at 0xffff8c289400>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_______________________________ test_gibbs_flow ________________________________
def test_gibbs_flow():
def generate_slice():
Nori = 32
image = np.zeros((6 * Nori, 6 * Nori))
image[Nori: 2 * Nori, Nori: 2 * Nori] = 1
image[Nori: 2 * Nori, 4 * Nori: 5 * Nori] = 1
image[2 * Nori: 3 * Nori, Nori: 3 * Nori] = 1
image[3 * Nori: 4 * Nori, 2 * Nori: 3 * Nori] = 2
image[3 * Nori: 4 * Nori, 4 * Nori: 5 * Nori] = 1
image[4 * Nori: 5 * Nori, 3 * Nori: 5 * Nori] = 3
# Corrupt image with gibbs ringing
c = np.fft.fft2(image)
c = np.fft.fftshift(c)
c_crop = c[48:144, 48:144]
image_gibbs = abs(np.fft.ifft2(c_crop)/4)
return image_gibbs
with TemporaryDirectory() as out_dir:
image4d = np.zeros((96, 96, 2, 2))
image4d[:, :, 0, 0] = generate_slice()
image4d[:, :, 1, 0] = generate_slice()
image4d[:, :, 0, 1] = generate_slice()
image4d[:, :, 1, 1] = generate_slice()
data_path = os.path.join(out_dir, "random_noise.nii.gz")
save_nifti(data_path, image4d, np.eye(4))
gibbs_flow = GibbsRingingFlow()
> gibbs_flow.run(data_path, out_dir=out_dir)
dipy/workflows/tests/test_denoise.py:121:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/denoise.py:372: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8c288ac0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/denoise.py', line 372, code run>
fnc = <bound method GibbsRingingFlow.run of <dipy.workflows.denoise.GibbsRingingFlow object at 0xffff8c2892b0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
______________________________ test_variable_type ______________________________
def test_variable_type():
with TemporaryDirectory() as out_dir:
open(pjoin(out_dir, 'test'), 'w').close()
open(pjoin(out_dir, 'test1'), 'w').close()
open(pjoin(out_dir, 'test2'), 'w').close()
sys.argv = [sys.argv[0]]
pos_results = [pjoin(out_dir, 'test'), pjoin(out_dir, 'test1'),
pjoin(out_dir, 'test2'), 12]
inputs = inputs_from_results(pos_results)
sys.argv.extend(inputs)
dcwf = DummyVariableTypeWorkflow()
> _, positional_res, positional_res2 = run_flow(dcwf)
dipy/workflows/tests/test_iap.py:54:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/flow_runner.py:88: in run_flow
return flow.run(**args)
dipy/workflows/tests/workflow_tests_utils.py:159: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff8c198d60, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/tests/workflow_tests_utils.py', line 159, code run>
fnc = <bound method DummyVariableTypeWorkflow.run of <dipy.workflows.tests.workflow_tests_utils.DummyVariableTypeWorkflow object at 0xffff8c289940>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_______________________________ test_split_flow ________________________________
def test_split_flow():
with TemporaryDirectory() as out_dir:
split_flow = SplitFlow()
data_path, _, _ = get_fnames()
volume, affine = load_nifti(data_path)
> split_flow.run(data_path, out_dir=out_dir)
dipy/workflows/tests/test_io.py:110:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/io.py:302: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff91b14af0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/io.py', line 302, code run>
fnc = <bound method SplitFlow.run of <dipy.workflows.io.SplitFlow object at 0xffff91c5f0e0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_____________________________ test_convert_sh_flow _____________________________
def test_convert_sh_flow():
with TemporaryDirectory() as out_dir:
filepath_in = os.path.join(out_dir, 'sh_coeff_img.nii.gz')
filename_out = 'sh_coeff_img_converted.nii.gz'
filepath_out = os.path.join(out_dir, filename_out)
# Create an input image
dim0, dim1, dim2 = 2, 3, 3 # spatial dimensions of array
num_sh_coeffs = 15 # 15 sh coeffs means l_max is 4
img_in = np.arange(
dim0*dim1*dim2*num_sh_coeffs, dtype=float
).reshape(dim0, dim1, dim2, num_sh_coeffs)
save_nifti(filepath_in, img_in, np.eye(4))
# Compute expected result to compare against later
expected_img_out = convert_sh_descoteaux_tournier(img_in)
# Run the workflow and load the output
workflow = ConvertSHFlow()
> workflow.run(
filepath_in,
out_dir=out_dir,
out_file=filename_out,
)
dipy/workflows/tests/test_io.py:162:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/io.py:423: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff98c49120, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/io.py', line 423, code run>
fnc = <bound method ConvertSHFlow.run of <dipy.workflows.io.ConvertSHFlow object at 0xffff8c28a510>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
__________________________ test_convert_tensors_flow ___________________________
def test_convert_tensors_flow():
with TemporaryDirectory() as out_dir:
filepath_in = os.path.join(out_dir, 'tensors_img.nii.gz')
filename_out = 'tensors_converted.nii.gz'
filepath_out = os.path.join(out_dir, filename_out)
# Create an input image
fdata, fbval, fbvec = get_fnames('small_25')
data, affine = load_nifti(fdata)
gtab = grad.gradient_table(fbval, fbvec)
tenmodel = dti.TensorModel(gtab)
tenfit = tenmodel.fit(data)
tensor_vals = dti.lower_triangular(tenfit.quadratic_form)
ten_img = nifti1_symmat(tensor_vals, affine=affine)
save_nifti(filepath_in, ten_img.get_fdata().squeeze(), affine)
# Compute expected result to compare against later
expected_img_out = reconst_utils.convert_tensors(
ten_img.get_fdata(), 'dipy', 'mrtrix')
# Run the workflow and load the output
workflow = ConvertTensorsFlow()
> workflow.run(
filepath_in,
from_format='dipy',
to_format='mrtrix',
out_dir=out_dir,
out_tensor=filename_out,
)
dipy/workflows/tests/test_io.py:228:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/io.py:457: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff91b142a0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/io.py', line 457, code run>
fnc = <bound method ConvertTensorsFlow.run of <dipy.workflows.io.ConvertTensorsFlow object at 0xffff8c28a660>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
__________________________________ test_mask ___________________________________
def test_mask():
with TemporaryDirectory() as out_dir:
data_path, _, _ = get_fnames('small_25')
volume, affine = load_nifti(data_path)
mask_flow = MaskFlow()
mask_flow.run(data_path, 10, out_dir=out_dir, ub=9)
assert_false(mask_flow.last_generated_outputs)
> mask_flow.run(data_path, 10, out_dir=out_dir)
dipy/workflows/tests/test_masking.py:21:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/mask.py:38: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff91b14af0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/mask.py', line 38, code run>
fnc = <bound method MaskFlow.run of <dipy.workflows.mask.MaskFlow object at 0xffff91c5f0e0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
------------------------------ Captured log call -------------------------------
ERROR root:mask.py:34 The upper bound(less than) should be greater than the lower bound (greater_than).
_______________________________ test_reconst_csa _______________________________
def test_reconst_csa():
with warnings.catch_warnings():
warnings.filterwarnings(
"ignore", message=descoteaux07_legacy_msg,
category=PendingDeprecationWarning)
> reconst_flow_core(ReconstCSAFlow)
dipy/workflows/tests/test_reconst_csa_csd.py:26:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_csa_csd.py:55: in reconst_flow_core
reconst_flow.run(data_path, bval_path, bvec_path, mask_path,
dipy/workflows/reconst.py:786: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xecdd400, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 786, code run>
fnc = <bound method ReconstCSAFlow.run of <dipy.workflows.reconst.ReconstCSAFlow object at 0xffff8c28a510>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_______________________________ test_reconst_csd _______________________________
def test_reconst_csd():
with warnings.catch_warnings():
warnings.filterwarnings(
"ignore", message=descoteaux07_legacy_msg,
category=PendingDeprecationWarning)
> reconst_flow_core(ReconstCSDFlow)
dipy/workflows/tests/test_reconst_csa_csd.py:34:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_csa_csd.py:49: in reconst_flow_core
reconst_flow.run(data_path, bval_path, bvec_path, mask_path,
dipy/workflows/reconst.py:620: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xdb1cdf0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 620, code run>
fnc = <bound method ReconstCSDFlow.run of <dipy.workflows.reconst.ReconstCSDFlow object at 0xffff8c2897f0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_______________________________ test_reconst_dki _______________________________
def test_reconst_dki():
with TemporaryDirectory() as out_dir:
data_path, bval_path, bvec_path = get_fnames('small_101D')
volume, affine = load_nifti(data_path)
mask = np.ones_like(volume[:, :, :, 0])
mask_path = pjoin(out_dir, 'tmp_mask.nii.gz')
save_nifti(mask_path, mask.astype(np.uint8), affine)
dki_flow = ReconstDkiFlow()
args = [data_path, bval_path, bvec_path, mask_path]
> dki_flow.run(*args, out_dir=out_dir)
dipy/workflows/tests/test_reconst_dki.py:28:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/reconst.py:937: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xf3cced0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 937, code run>
fnc = <bound method ReconstDkiFlow.run of <dipy.workflows.reconst.ReconstDkiFlow object at 0xffff8c289a90>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_______________________________ test_reconst_dsi _______________________________
def test_reconst_dsi():
with TemporaryDirectory() as out_dir:
data_path, bval_path, bvec_path = get_fnames('small_64D')
volume, affine = load_nifti(data_path)
mask = np.ones_like(volume[:, :, :, 0])
mask_path = pjoin(out_dir, 'tmp_mask.nii.gz')
save_nifti(mask_path, mask.astype(np.uint8), affine)
dsi_flow = ReconstDsiFlow()
with warnings.catch_warnings():
warnings.filterwarnings("ignore", message=descoteaux07_legacy_msg,
category=PendingDeprecationWarning)
> dsi_flow.run(data_path, bval_path, bvec_path, mask_path,
out_dir=out_dir, extract_pam_values=True)
dipy/workflows/tests/test_reconst_dsi.py:26:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/reconst.py:493: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xef36490, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 493, code run>
fnc = <bound method ReconstDsiFlow.run of <dipy.workflows.reconst.ReconstDsiFlow object at 0xffff8c289940>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_____________________________ test_reconst_dti_wls _____________________________
def test_reconst_dti_wls():
> reconst_flow_core(ReconstDtiFlow)
dipy/workflows/tests/test_reconst_dti.py:13:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_dti.py:44: in reconst_flow_core
dti_flow.run(*args, **kwargs)
dipy/workflows/reconst.py:332: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xeed4730, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 332, code run>
fnc = <bound method ReconstDtiFlow.run of <dipy.workflows.reconst.ReconstDtiFlow object at 0xffff8c288980>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
____________________________ test_reconst_dti_nlls _____________________________
def test_reconst_dti_nlls():
> reconst_flow_core(ReconstDtiFlow, extra_args=[], extra_kwargs={})
dipy/workflows/tests/test_reconst_dti.py:17:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_dti.py:44: in reconst_flow_core
dti_flow.run(*args, **kwargs)
dipy/workflows/reconst.py:332: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0x1080fec0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 332, code run>
fnc = <bound method ReconstDtiFlow.run of <dipy.workflows.reconst.ReconstDtiFlow object at 0xffff91928410>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_________________________ test_reconst_dti_alt_tensor __________________________
def test_reconst_dti_alt_tensor():
> reconst_flow_core(ReconstDtiFlow, extra_args=[],
extra_kwargs={'nifti_tensor': False})
dipy/workflows/tests/test_reconst_dti.py:21:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_dti.py:44: in reconst_flow_core
dti_flow.run(*args, **kwargs)
dipy/workflows/reconst.py:332: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xeca03f0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 332, code run>
fnc = <bound method ReconstDtiFlow.run of <dipy.workflows.reconst.ReconstDtiFlow object at 0xffff8ce8e0d0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
______________________________ test_reconst_ivim _______________________________
def test_reconst_ivim():
with TemporaryDirectory() as out_dir:
bvals = np.array([0., 10., 20., 30., 40., 60., 80., 100.,
120., 140., 160., 180., 200., 300., 400.,
500., 600., 700., 800., 900., 1000.])
N = len(bvals)
bvecs = generate_bvecs(N)
temp_bval_path = pjoin(out_dir, "temp.bval")
np.savetxt(temp_bval_path, bvals)
temp_bvec_path = pjoin(out_dir, "temp.bvec")
np.savetxt(temp_bvec_path, bvecs)
gtab = gradient_table(bvals, bvecs)
S0, f, D_star, D = 1000.0, 0.132, 0.00885, 0.000921
mevals = np.array(([D_star, D_star, D_star], [D, D, D]))
# This gives an isotropic signal.
data = multi_tensor(gtab, mevals, snr=None, S0=S0,
fractions=[f * 100, 100 * (1 - f)])
# Single voxel data
data_single = data[0]
temp_affine = np.eye(4)
data_multi = np.zeros((2, 2, 1, len(gtab.bvals)), dtype=int)
data_multi[0, 0, 0] = data_multi[0, 1, 0] = data_multi[
1, 0, 0] = data_multi[1, 1, 0] = data_single
data_path = pjoin(out_dir, 'tmp_data.nii.gz')
save_nifti(data_path, data_multi, temp_affine,
dtype=data_multi.dtype)
mask = np.ones_like(data_multi[..., 0], dtype=np.uint8)
mask_path = pjoin(out_dir, 'tmp_mask.nii.gz')
save_nifti(mask_path, mask, temp_affine)
ivim_flow = ReconstIvimFlow()
args = [data_path, temp_bval_path, temp_bvec_path, mask_path]
msg = "Bounds for this fit have been set from experiments and * "
with warnings.catch_warnings():
warnings.filterwarnings(
"ignore", message=msg,
category=UserWarning)
> ivim_flow.run(*args, out_dir=out_dir)
dipy/workflows/tests/test_reconst_ivim.py:59:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/reconst.py:1106: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff96875380, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 1106, code run>
fnc = <bound method ReconstIvimFlow.run of <dipy.workflows.reconst.ReconstIvimFlow object at 0xffff91c5f0e0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_________________________ test_reconst_mmri_laplacian __________________________
def test_reconst_mmri_laplacian():
> reconst_mmri_core(ReconstMAPMRIFlow, lap=True, pos=False)
dipy/workflows/tests/test_reconst_mapmri.py:18:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_mapmri.py:46: in reconst_mmri_core
mmri_flow.run(data_files=data_path, bvals_files=bval_path,
dipy/workflows/reconst.py:114: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xfd028b0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 114, code run>
fnc = <bound method ReconstMAPMRIFlow.run of <dipy.workflows.reconst.ReconstMAPMRIFlow object at 0xffff8c289940>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
____________________________ test_reconst_mmri_none ____________________________
def test_reconst_mmri_none():
> reconst_mmri_core(ReconstMAPMRIFlow, lap=False, pos=False)
dipy/workflows/tests/test_reconst_mapmri.py:22:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_mapmri.py:46: in reconst_mmri_core
mmri_flow.run(data_files=data_path, bvals_files=bval_path,
dipy/workflows/reconst.py:114: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xf394d20, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 114, code run>
fnc = <bound method ReconstMAPMRIFlow.run of <dipy.workflows.reconst.ReconstMAPMRIFlow object at 0xffff8ce8e210>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
______________________________ test_reconst_rumba ______________________________
def test_reconst_rumba():
with warnings.catch_warnings():
warnings.filterwarnings(
"ignore", message=descoteaux07_legacy_msg,
category=PendingDeprecationWarning)
> reconst_flow_core(ReconstRUMBAFlow)
dipy/workflows/tests/test_reconst_rumba.py:21:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/tests/test_reconst_rumba.py:34: in reconst_flow_core
reconst_flow.run(
dipy/utils/deprecator.py:408: in wrapper
return function(*args, **kwargs)
dipy/workflows/reconst.py:1293: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0x12288570, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 1293, code run>
fnc = <bound method ReconstRUMBAFlow.run of <dipy.workflows.reconst.ReconstRUMBAFlow object at 0xffff8c289a90>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
____________________________ test_median_otsu_flow _____________________________
def test_median_otsu_flow():
with TemporaryDirectory() as out_dir:
data_path, _, _ = get_fnames('small_25')
volume = load_nifti_data(data_path)
save_masked = True
median_radius = 3
numpass = 3
autocrop = False
vol_idx = [0]
dilate = 0
mo_flow = MedianOtsuFlow()
> mo_flow.run(data_path, out_dir=out_dir, save_masked=save_masked,
median_radius=median_radius, numpass=numpass,
autocrop=autocrop, vol_idx=vol_idx, dilate=dilate)
dipy/workflows/tests/test_segment.py:32:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/segment.py:59: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff6f38a430, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/segment.py', line 59, code run>
fnc = <bound method MedianOtsuFlow.run of <dipy.workflows.segment.MedianOtsuFlow object at 0xffff91c5f0e0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
____________________________ test_recobundles_flow _____________________________
def test_recobundles_flow():
with TemporaryDirectory() as out_dir:
data_path = get_fnames('fornix')
fornix = load_tractogram(data_path, 'same',
bbox_valid_check=False).streamlines
f = Streamlines(fornix)
f1 = f.copy()
f2 = f1[:15].copy()
f2._data += np.array([40, 0, 0])
f.extend(f2)
f2_path = pjoin(out_dir, "f2.trk")
sft = StatefulTractogram(f2, data_path, Space.RASMM)
save_tractogram(sft, f2_path, bbox_valid_check=False)
f1_path = pjoin(out_dir, "f1.trk")
sft = StatefulTractogram(f, data_path, Space.RASMM)
save_tractogram(sft, f1_path, bbox_valid_check=False)
rb_flow = RecoBundlesFlow(force=True)
> rb_flow.run(f1_path, f2_path, greater_than=0, clust_thr=10,
model_clust_thr=5., reduction_thr=10, out_dir=out_dir)
dipy/workflows/tests/test_segment.py:78:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/segment.py:208: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xf078530, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/segment.py', line 208, code run>
fnc = <bound method RecoBundlesFlow.run of <dipy.workflows.segment.RecoBundlesFlow object at 0xffff8c289940>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
------------------------------ Captured log call -------------------------------
INFO root:segment.py:206 ### RecoBundles ###
__________________________________ test_stats __________________________________
def test_stats():
with TemporaryDirectory() as out_dir:
data_path, bval_path, bvec_path = get_fnames('small_101D')
volume, affine = load_nifti(data_path)
mask = np.ones_like(volume[:, :, :, 0], dtype=np.uint8)
mask_path = join(out_dir, 'tmp_mask.nii.gz')
save_nifti(mask_path, mask, affine)
snr_flow = SNRinCCFlow(force=True)
args = [data_path, bval_path, bvec_path, mask_path]
> snr_flow.run(*args, out_dir=out_dir)
dipy/workflows/tests/test_stats.py:42:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/stats.py:67: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xf03ca40, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/stats.py', line 67, code run>
fnc = <bound method SNRinCCFlow.run of <dipy.workflows.stats.SNRinCCFlow object at 0xffff8c28a510>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
__________________ test_particle_filtering_tracking_workflows __________________
def test_particle_filtering_tracking_workflows():
with TemporaryDirectory() as out_dir:
dwi_path, bval_path, bvec_path = get_fnames('small_64D')
volume, affine = load_nifti(dwi_path)
# Create some mask
mask = np.ones_like(volume[:, :, :, 0], dtype=np.uint8)
mask_path = join(out_dir, 'tmp_mask.nii.gz')
save_nifti(mask_path, mask, affine)
simple_wm = np.array([[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 1, 1, 1, 0, 0, 0, 0],
[0, 0, 1, 1, 1, 1, 0, 1, 0, 0],
[0, 0, 1, 0, 1, 0, 1, 0, 0, 0],
[0, 0, 1, 0, 1, 1, 0, 1, 0, 0],
[0, 0, 0, 1, 1, 0, 1, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
])
simple_wm = np.dstack([np.zeros(simple_wm.shape),
np.zeros(simple_wm.shape),
simple_wm, simple_wm, simple_wm,
simple_wm, simple_wm, simple_wm,
np.zeros(simple_wm.shape),
np.zeros(simple_wm.shape)])
simple_gm = np.array([[0, 1, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 1, 1, 0, 0, 1, 1, 1, 0],
[0, 1, 0, 0, 0, 0, 0, 0, 0, 1],
[0, 1, 0, 0, 0, 0, 0, 0, 1, 0],
[0, 1, 0, 0, 0, 0, 0, 0, 1, 0],
[0, 1, 0, 0, 0, 0, 0, 0, 0, 1],
[1, 0, 0, 0, 0, 0, 0, 0, 1, 0],
[0, 1, 0, 0, 0, 0, 1, 0, 1, 0],
[0, 1, 1, 0, 1, 1, 1, 0, 1, 1],
[0, 0, 0, 1, 0, 0, 0, 1, 1, 0],
])
simple_gm = np.dstack([np.zeros(simple_gm.shape),
np.zeros(simple_gm.shape),
simple_gm, simple_gm, simple_gm,
simple_gm, simple_gm, simple_gm,
np.zeros(simple_gm.shape),
np.zeros(simple_gm.shape)])
simple_csf = np.ones(simple_wm.shape) - simple_wm - simple_gm
wm_path = join(out_dir, 'tmp_wm.nii.gz')
gm_path = join(out_dir, 'tmp_gm.nii.gz')
csf_path = join(out_dir, 'tmp_csf.nii.gz')
for path, arr in zip([wm_path, gm_path, csf_path],
[simple_wm, simple_gm, simple_csf]):
save_nifti(path, arr.astype(np.uint8), affine)
# CSD Reconstruction
reconst_csd_flow = ReconstCSDFlow()
with warnings.catch_warnings():
warnings.filterwarnings(
"ignore", message=descoteaux07_legacy_msg,
category=PendingDeprecationWarning)
> reconst_csd_flow.run(dwi_path, bval_path, bvec_path, mask_path,
out_dir=out_dir, extract_pam_values=True)
dipy/workflows/tests/test_tracking.py:81:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/reconst.py:620: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0x124cc390, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 620, code run>
fnc = <bound method ReconstCSDFlow.run of <dipy.workflows.reconst.ReconstCSDFlow object at 0xffff8ce8f610>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
______________________ test_local_fiber_tracking_workflow ______________________
def test_local_fiber_tracking_workflow():
with TemporaryDirectory() as out_dir:
data_path, bval_path, bvec_path = get_fnames('small_64D')
volume, affine = load_nifti(data_path)
mask = np.ones_like(volume[:, :, :, 0], dtype=np.uint8)
mask_path = join(out_dir, 'tmp_mask.nii.gz')
save_nifti(mask_path, mask, affine)
reconst_csd_flow = ReconstCSDFlow()
with warnings.catch_warnings():
warnings.filterwarnings(
"ignore", message=descoteaux07_legacy_msg,
category=PendingDeprecationWarning)
> reconst_csd_flow.run(data_path, bval_path, bvec_path, mask_path,
out_dir=out_dir, extract_pam_values=True)
dipy/workflows/tests/test_tracking.py:136:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/reconst.py:620: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xdb1cdf0, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/reconst.py', line 620, code run>
fnc = <bound method ReconstCSDFlow.run of <dipy.workflows.reconst.ReconstCSDFlow object at 0xffff8ce8e0d0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
_____________________________ test_force_overwrite _____________________________
def test_force_overwrite():
with TemporaryDirectory() as out_dir:
data_path, _, _ = get_fnames('small_25')
mo_flow = MedianOtsuFlow(output_strategy='absolute')
# Generate the first results
> mo_flow.run(data_path, out_dir=out_dir, vol_idx=[0])
dipy/workflows/tests/test_workflow.py:19:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
dipy/workflows/segment.py:59: in run
io_it = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
frame = <frame at 0xffff6f375620, file '/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/segment.py', line 59, code run>
fnc = <bound method MedianOtsuFlow.run of <dipy.workflows.segment.MedianOtsuFlow object at 0xffff8ce8e5d0>>
output_strategy = 'absolute', mix_names = False
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
______________________________ test_missing_file _______________________________
def test_missing_file():
# The function is invoking a dummy workflow with a non-existent file.
# So, an OSError will be raised.
class TestMissingFile(Workflow):
def run(self, filename, out_dir=''):
"""Dummy Workflow used to test if input file is absent.
Parameters
----------
filename : string
path of the first input file.
out_dir: string, optional
folder path to save the results.
"""
io = self.get_io_iterator()
dummyflow = TestMissingFile()
with TemporaryDirectory() as tempdir:
> npt.assert_raises(OSError, dummyflow.run,
pjoin(tempdir, 'dummy_file.txt'))
dipy/workflows/tests/test_workflow.py:71:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib/python3.13/unittest/case.py:795: in assertRaises
return context.handle('assertRaises', args, kwargs)
/usr/lib/python3.13/unittest/case.py:238: in handle
callable_obj(*args, **kwargs)
dipy/workflows/tests/test_workflow.py:67: in run
io = self.get_io_iterator()
dipy/workflows/workflow.py:36: in get_io_iterator
io_it = io_iterator_(frame, self.run,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
def io_iterator_(frame, fnc, output_strategy='absolute', mix_names=False):
"""Create an IOIterator using introspection.
Parameters
----------
frame : frameobject
Contains the info about the current local variables values.
fnc : function
The function to inspect
output_strategy : string
Controls the behavior of the IOIterator for output paths.
mix_names : bool
Whether or not to append a mix of input names at the beginning.
Returns
-------
Properly instantiated IOIterator object.
"""
args, _, _, values = inspect.getargvalues(frame)
args.remove('self')
> del values['self']
E TypeError: cannot remove variables from FrameLocalsProxy
dipy/workflows/multi_io.py:177: TypeError
=============================== warnings summary ===============================
debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/denoise/tests/test_gibbs.py: 19 warnings
debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/direction/tests/test_peaks.py: 22 warnings
debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/reconst/tests/test_sfm.py: 16 warnings
debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/utils/tests/test_parallel.py: 8 warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=1677) is multi-threaded, use of fork() may lead to deadlocks in the child.
self.pid = os.fork()
debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/reconst/tests/test_sfm.py::test_sfm
/usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=1677) is multi-threaded, use of fork() may lead to deadlocks in the child.
pid = os.fork()
debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/tests/test_tracking.py::test_particle_filtering_tracking_workflows
/<<PKGBUILDDIR>>/debian/python3-dipy/usr/lib/python3.13/dist-packages/dipy/workflows/tests/test_tracking.py:73: RuntimeWarning: invalid value encountered in cast
save_nifti(path, arr.astype(np.uint8), affine)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED dipy/workflows/tests/test_align.py::test_reslice - TypeError: cannot r...
FAILED dipy/workflows/tests/test_align.py::test_slr_flow - TypeError: cannot ...
FAILED dipy/workflows/tests/test_align.py::test_image_registration - TypeErro...
FAILED dipy/workflows/tests/test_align.py::test_apply_affine_transform - Type...
FAILED dipy/workflows/tests/test_align.py::test_motion_correction - TypeError...
FAILED dipy/workflows/tests/test_align.py::test_syn_registration_flow - TypeE...
FAILED dipy/workflows/tests/test_denoise.py::test_nlmeans_flow - TypeError: c...
FAILED dipy/workflows/tests/test_denoise.py::test_patch2self_flow - TypeError...
FAILED dipy/workflows/tests/test_denoise.py::test_lpca_flow - TypeError: cann...
FAILED dipy/workflows/tests/test_denoise.py::test_mppca_flow - TypeError: can...
FAILED dipy/workflows/tests/test_denoise.py::test_gibbs_flow - TypeError: can...
FAILED dipy/workflows/tests/test_iap.py::test_variable_type - TypeError: cann...
FAILED dipy/workflows/tests/test_io.py::test_split_flow - TypeError: cannot r...
FAILED dipy/workflows/tests/test_io.py::test_convert_sh_flow - TypeError: can...
FAILED dipy/workflows/tests/test_io.py::test_convert_tensors_flow - TypeError...
FAILED dipy/workflows/tests/test_masking.py::test_mask - TypeError: cannot re...
FAILED dipy/workflows/tests/test_reconst_csa_csd.py::test_reconst_csa - TypeE...
FAILED dipy/workflows/tests/test_reconst_csa_csd.py::test_reconst_csd - TypeE...
FAILED dipy/workflows/tests/test_reconst_dki.py::test_reconst_dki - TypeError...
FAILED dipy/workflows/tests/test_reconst_dsi.py::test_reconst_dsi - TypeError...
FAILED dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_wls - TypeE...
FAILED dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_nlls - Type...
FAILED dipy/workflows/tests/test_reconst_dti.py::test_reconst_dti_alt_tensor
FAILED dipy/workflows/tests/test_reconst_ivim.py::test_reconst_ivim - TypeErr...
FAILED dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_laplacian
FAILED dipy/workflows/tests/test_reconst_mapmri.py::test_reconst_mmri_none - ...
FAILED dipy/workflows/tests/test_reconst_rumba.py::test_reconst_rumba - TypeE...
FAILED dipy/workflows/tests/test_segment.py::test_median_otsu_flow - TypeErro...
FAILED dipy/workflows/tests/test_segment.py::test_recobundles_flow - TypeErro...
FAILED dipy/workflows/tests/test_stats.py::test_stats - TypeError: cannot rem...
FAILED dipy/workflows/tests/test_tracking.py::test_particle_filtering_tracking_workflows
FAILED dipy/workflows/tests/test_tracking.py::test_local_fiber_tracking_workflow
FAILED dipy/workflows/tests/test_workflow.py::test_force_overwrite - TypeErro...
FAILED dipy/workflows/tests/test_workflow.py::test_missing_file - TypeError: ...
= 34 failed, 788 passed, 169 skipped, 9 deselected, 67 warnings in 712.51s (0:11:52) =
make[1]: *** [debian/rules:83: execute_after_dh_auto_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:60: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-10-11T16:37:10Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 407600
Build-Time: 1103
Distribution: sid
Fail-Stage: build
Host Architecture: arm64
Install-Time: 122
Job: /tmp/debusine-fetch-exec-upload-4a5vdm45/dipy_1.9.0-8.dsc
Machine Architecture: arm64
Package: dipy
Package-Time: 1282
Source-Version: 1.9.0-8
Space: 407600
Status: attempted
Version: 1.9.0-8+bd1
--------------------------------------------------------------------------------
Finished at 2024-10-11T16:37:10Z
Build needed 00:21:22, 407600k disk space