deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: perl (>= 5.40.0-6), perlapi-5.40.0, pdl (>= 1:2.093-1+b1), pdlapi-20, libc6
(>= 2.38), bioperl, libwww-perl, libdbi-perl
Description: |-
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
Homepage: http://tfbs.genereg.net
Installed-Size: '981'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: libtfbs-perl
Priority: optional
Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl
Section: perl
Source: libtfbs-perl (0.7.1+ds-4)
Version: 0.7.1+ds-4+b1
srcpkg_name: libtfbs-perl
srcpkg_version: 0.7.1+ds-4