sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-06.freexian.com
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| lambda-align 1.0.3-6 (arm64) Sat, 16 Nov 2024 20:47:35 +0000 |
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Package: lambda-align
Version: 1.0.3-6
Source Version: 1.0.3-6
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.8kLJtm3F0v...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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Copying /tmp/debusine-fetch-exec-upload-953x6kio/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-953x6kio/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-953x6kio/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-953x6kio/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-953x6kio/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-953x6kio/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-953x6kio/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/lambda-align-GiIvkz/resolver-u2IzWr' with '<<RESOLVERDIR>>'
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Get:1 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ InRelease
Ign:1 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ InRelease
Get:2 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ Release [606 B]
Get:4 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ Release.gpg
Ign:4 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ Release.gpg
Get:5 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ Packages [9246 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9952 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4909 kB]
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Calculating upgrade...
The following packages will be upgraded:
apt bsdextrautils bsdutils debianutils dpkg dpkg-dev libapt-pkg6.0t64
libaudit-common libaudit1 libblkid1 libbrotli1 libcap-ng0 libdpkg-perl
libglib2.0-0t64 libmarkdown2 libmount1 libpcre2-8-0 libseccomp2 libselinux1
libsemanage2 libsmartcols1 libsystemd0 libudev1 libuuid1 libxml2 login
login.defs mount passwd util-linux
30 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:1 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:2 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:3 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libsystemd0 arm64 257~rc2-3 [416 kB]
Get:6 file:/build/lambda-align-GiIvkz/resolver-ta9psC/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libudev1 arm64 257~rc2-3 [139 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-4 [243 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 login.defs all 1:4.16.0-5 [185 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 passwd arm64 1:4.16.0-5 [1210 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
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Setting up passwd (1:4.16.0-5) ...
Processing triggers for man-db (2.13.0-1) ...
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+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-953x6kio/lambda-align_1.0.3-6.dsc exists in /tmp/debusine-fetch-exec-upload-953x6kio; copying to chroot
I: NOTICE: Log filtering will replace 'build/lambda-align-GiIvkz/lambda-align-1.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/lambda-align-GiIvkz' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl, build-essential, fakeroot
Filtered Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl, build-essential, fakeroot
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
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Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
dh-autoreconf dh-strip-nondeterminism dwz fakeroot g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libarchive13t64 libasan8
libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4t64
libdebhelper-perl libelf1t64 libexpat1 libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
libjsoncpp26 liblsan0 libmpc3 libmpfr6 libncursesw6 libproc2-0 librhash1
libseqan2-dev libstdc++-14-dev libtool libtsan2 libubsan1 libuv1t64
linux-libc-dev m4 po-debconf procps rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build cpp-doc gcc-14-locales cpp-14-doc dh-make
gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu lrzip libc-devtools glibc-doc libstdc++-14-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
Recommended packages:
bzip2-doc manpages manpages-dev libarchive-cpio-perl libgpm2 libltdl-dev
libmail-sendmail-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
dh-autoreconf dh-strip-nondeterminism dwz fakeroot g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libarchive13t64 libasan8
libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4t64
libdebhelper-perl libelf1t64 libexpat1 libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
libjsoncpp26 liblsan0 libmpc3 libmpfr6 libncursesw6 libproc2-0 librhash1
libseqan2-dev libstdc++-14-dev libtool libtsan2 libubsan1 libuv1t64
linux-libc-dev m4 po-debconf procps rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
Need to get 77.4 MB of archives.
After this operation, 308 MB of additional disk space will be used.
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Get:26 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-8 [2386 kB]
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Get:38 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:39 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:40 http://deb.debian.org/debian sid/main arm64 cmake-data all 3.31.0-1 [2265 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 cmake arm64 3.31.0-1 [9874 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
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Get:53 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.7-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.11 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 cmake_3.31.0-1 cmake-data_3.31.0-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1+b1 diffutils_1:3.10-1+b1 dpkg_1.22.12~1.gbp82cafd dpkg-dev_1.22.12~1.gbp82cafd dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: lambda-align
Binary: lambda-align
Architecture: any
Version: 1.0.3-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>, Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage: https://seqan.github.io/lambda
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/lambda-align
Vcs-Git: https://salsa.debian.org/med-team/lambda-align.git
Testsuite: autopkgtest
Testsuite-Triggers: @builddeps@, coreutils, diffutils, gzip, openssl
Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl
Package-List:
lambda-align deb science optional arch=any
Checksums-Sha1:
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f7950e95ae15131b6a3ef5c0aac6a65e30b681de 8076 lambda-align_1.0.3-6.debian.tar.xz
Checksums-Sha256:
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Files:
b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz
c3059711cc55cec3d40ede08e067c36a 8076 lambda-align_1.0.3-6.debian.tar.xz
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gpgv: Signature made Sat Feb 8 15:33:49 2020 UTC
gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-6.dsc: no acceptable signature found
dpkg-source: info: extracting lambda-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz
dpkg-source: info: unpacking lambda-align_1.0.3-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying set-seqan-cmake-dir.patch
dpkg-source: info: applying force-link-rt-pthread.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package lambda-align
dpkg-buildpackage: info: source version 1.0.3-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sascha Steinbiss <satta@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
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dh clean --builddirectory=build
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make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release
cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release ..
CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
[1mCompiler Detection[m
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
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-- Detecting CXX compile features
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[1mDependency detection[m
CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM):
Policy CMP0153 is not set: The exec_program command should not be called.
Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Use execute_process() instead.
Call Stack (most recent call first):
src/CMakeLists.txt:31 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- These dependencies where found:
OPENMP TRUE -fopenmp
ZLIB TRUE 1.3.1
BZIP2 TRUE 1.0.8
SEQAN TRUE 2.4.0
-- The requirements where met.
[1mBuild configuration[m
-- LAMBDA version is: 1.0.2
-- The following options are selected for the build:
LAMBDA_FASTBUILD OFF
LAMBDA_LINGAPS_OPT OFF
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LAMBDA_STATIC_BUILD OFF
-- Run 'cmake -LH' to get a comment on each option.
-- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option.
[1mSetting up unit tests[m
CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Configuring done (2.0s)
-- Generating done (0.0s)
CMake Warning:
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CMAKE_EXPORT_NO_PACKAGE_REGISTRY
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CMAKE_INSTALL_LOCALSTATEDIR
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cd build && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build --check-build-system CMakeFiles/Makefile.cmake 0
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cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color="
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make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
[ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /<<PKGBUILDDIR>>/src/lambda.cpp
[ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /<<PKGBUILDDIR>>/src/lambda_indexer.cpp
In file included from /<<PKGBUILDDIR>>/src/misc.hpp:34,
from /<<PKGBUILDDIR>>/src/lambda_indexer.hpp:35,
from /<<PKGBUILDDIR>>/src/lambda_indexer.cpp:31:
/<<PKGBUILDDIR>>/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
323 | setDate(parser, __DATE__);
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/lambda.cpp:32:
/<<PKGBUILDDIR>>/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
323 | setDate(parser, __DATE__);
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/lambda_indexer.hpp:37:
/<<PKGBUILDDIR>>/src/radix_inplace.h:121:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
121 | public std::unary_function<TSAValue, TSize>
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /usr/include/seqan/basic/debug_test_system.h:150,
from /usr/include/seqan/basic/basic_debug.h:52,
from /usr/include/seqan/basic.h:49,
from /<<PKGBUILDDIR>>/src/lambda_indexer.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/radix_inplace.h:145:17: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
145 | public std::unary_function<TSAValue, TSize>
| ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
117 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/lambda.cpp:34:
/<<PKGBUILDDIR>>/src/lambda.hpp:79:19: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
79 | public ::std::binary_function < TSav, TSav, bool >
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from /<<PKGBUILDDIR>>/src/lambda.cpp:22:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/seqan/blast.h:64,
from /<<PKGBUILDDIR>>/src/output.hpp:25,
from /<<PKGBUILDDIR>>/src/lambda.cpp:31:
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::Dna5_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::Dna5_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
168 | return argConv3(options,
| ~~~~~~~~^~~~~~~~~
169 | TOutFormat(),
| ~~~~~~~~~~~~~
170 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
171 | BlastProgramSelector<BlastProgram::BLASTN>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
172 | Dna5());
| ~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, Dna5_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, Tag<Simple_> >; BlastProgram p = seqan::BlastProgram::BLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastReport_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastReport_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:145:24: required from here
145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:147:24: required from here
147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::NO_COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
175 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
176 | TOutFormat(),
| ~~~~~~~~~~~~~
177 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
178 | BlastProgramSelector<BlastProgram::BLASTP>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTP; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
180 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
181 | TOutFormat(),
| ~~~~~~~~~~~~~
182 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
183 | BlastProgramSelector<BlastProgram::BLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::BLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
186 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
187 | TOutFormat(),
| ~~~~~~~~~~~~~
188 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
189 | BlastProgramSelector<BlastProgram::TBLASTN>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTN; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::AminoAcid_> >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::IndexSa<>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
316 | return realMain<IndexSa<>>(options,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
317 | TOutFormat(),
| ~~~~~~~~~~~~~
318 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
319 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
320 | TRedAlph(),
| ~~~~~~~~~~~
321 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, unsigned int, seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, seqan::String<unsigned int, seqan::Alloc<> > >; TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >; typename TLocalHolder::TMatch = Match<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > > >]’:
/<<PKGBUILDDIR>>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder<GlobalDataHolder<seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >, seqan::FMIndex<void, LambdaFMIndexConfig>, seqan::Tag<seqan::BlastTabular_>, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag<seqan::AffineGaps_> >]’
1513 | int lret = computeBlastMatch(bm, *it, lH);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex<void, LambdaFMIndexConfig>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
462 | res = iterateMatches(localHolder);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
323 | return realMain<TFMIndex<>>(options,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
324 | TOutFormat(),
| ~~~~~~~~~~~~~
325 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
326 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
327 | TRedAlph(),
| ~~~~~~~~~~~
328 | TScoreExtension());
| ~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
266 | return argConv4(options,
| ~~~~~~~~^~~~~~~~~
267 | TOutFormat(),
| ~~~~~~~~~~~~~
268 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
269 | BlastProgramSelector<p>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
270 | TRedAlph(),
| ~~~~~~~~~~~
271 | AffineGaps());
| ~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’
221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid<Murphy10>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’
191 | return argConv2(options,
| ~~~~~~~~^~~~~~~~~
192 | TOutFormat(),
| ~~~~~~~~~~~~~
193 | BlastTabularSpecSelector<h>(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
194 | BlastProgramSelector<BlastProgram::TBLASTX>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.cpp:149:24: required from here
149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector<BlastTabularSpec::COMMENTS>());
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, BlastIOContext<TScore, p, h>&) [with TBlastMatch = BlastMatch<Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Tag<ArrayGaps_> >, Gaps<Segment<String<SimpleType<unsigned char, AminoAcid_>, MMap<> >, InfixSegment>, Tag<ArrayGaps_> >, unsigned int, Segment<String<char, Alloc<> >, InfixSegment>, Segment<String<char, MMap<> >, InfixSegment>, std::vector<std::__cxx11::basic_string<char> >, String<unsigned int, Alloc<> > >; TScore = Score<int, ScoreMatrix<SimpleType<unsigned char, AminoAcid_>, ScoreSpecSelectable> >; BlastProgram p = seqan::BlastProgram::TBLASTX; BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations]
1282 | computeEValue(bm, context(lH.gH.outfile));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here
1176 | computeEValue(TBlastMatch & match,
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/options.hpp: In function ‘void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]’:
/<<PKGBUILDDIR>>/src/options.hpp:173:11: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
173 | getcwd(cwd, 1000);
| ~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/options.hpp: In function ‘void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]’:
/<<PKGBUILDDIR>>/src/options.hpp:173:11: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
173 | getcwd(cwd, 1000);
| ~~~~~~^~~~~~~~~~~
[ 75%] Linking CXX executable ../bin/lambda_indexer
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++.isra’ at /usr/include/seqan/index/pipe_merger3.h:127:17:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process’ at /usr/include/seqan/index/index_skew7.h:345:26,
inlined from ‘__ct_base ’ at /usr/include/seqan/index/index_skew7.h:312:20:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:18,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:11,
inlined from ‘_toText’ at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:280:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:290:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign.constprop.isra’ at /usr/include/seqan/pipe/pool_base.h:1369:42:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘assign.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file,CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[ 75%] Built target lambda_indexer
[100%] Linking CXX executable ../bin/lambda
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In member function ‘operator++’,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:317:20:
/usr/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
470 | outRef->i2.i[skipped++] = 0;
| ^
/usr/include/seqan/basic/tuple_base.h: In member function ‘process.isra’:
/usr/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object ‘i’ of size 7
141 | typename StoredTupleValue_<TValue>::Type i[SIZE];
| ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file,CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[100%] Built target lambda
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd build/tests && ctest 8
Test project /<<PKGBUILDDIR>>/build/tests
Start 1: test_mkindex_blastn_sa
1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.18 sec
Start 2: test_mkindex_blastn_fm
2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.18 sec
Start 3: test_mkindex_blastp_sa
3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.07 sec
Start 4: test_mkindex_blastp_fm
4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.09 sec
Start 5: test_mkindex_blastx_sa
5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.08 sec
Start 6: test_mkindex_blastx_fm
6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.09 sec
Start 7: test_mkindex_tblastn_sa
7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.21 sec
Start 8: test_mkindex_tblastn_fm
8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.24 sec
Start 9: test_mkindex_tblastx_sa
9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.21 sec
Start 10: test_mkindex_tblastx_fm
10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.23 sec
Start 11: test_search_blastn_sa_m0
11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 1.57 sec
Start 12: test_search_blastn_sa_m8
12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 1.30 sec
Start 13: test_search_blastn_sa_m9
13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 1.30 sec
Start 14: test_search_blastn_sa_sam
14/80 Test #14: test_search_blastn_sa_sam ........ Passed 1.40 sec
Start 15: test_search_blastn_sa_bam
15/80 Test #15: test_search_blastn_sa_bam ........ Passed 1.33 sec
Start 16: test_search_blastn_sa_m9.gz
16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 1.39 sec
Start 17: test_search_blastn_sa_sam.bz2
17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 1.81 sec
Start 18: test_search_blastn_fm_m0
18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 1.46 sec
Start 19: test_search_blastn_fm_m8
19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 1.28 sec
Start 20: test_search_blastn_fm_m9
20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 1.23 sec
Start 21: test_search_blastn_fm_sam
21/80 Test #21: test_search_blastn_fm_sam ........ Passed 1.29 sec
Start 22: test_search_blastn_fm_bam
22/80 Test #22: test_search_blastn_fm_bam ........ Passed 1.30 sec
Start 23: test_search_blastn_fm_m9.gz
23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 1.33 sec
Start 24: test_search_blastn_fm_sam.bz2
24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 1.77 sec
Start 25: test_search_blastp_sa_m0
25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.27 sec
Start 26: test_search_blastp_sa_m8
26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.25 sec
Start 27: test_search_blastp_sa_m9
27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.26 sec
Start 28: test_search_blastp_sa_sam
28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.23 sec
Start 29: test_search_blastp_sa_bam
29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.25 sec
Start 30: test_search_blastp_sa_m9.gz
30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.24 sec
Start 31: test_search_blastp_sa_sam.bz2
31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.27 sec
Start 32: test_search_blastp_fm_m0
32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.27 sec
Start 33: test_search_blastp_fm_m8
33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.26 sec
Start 34: test_search_blastp_fm_m9
34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.25 sec
Start 35: test_search_blastp_fm_sam
35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.25 sec
Start 36: test_search_blastp_fm_bam
36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.26 sec
Start 37: test_search_blastp_fm_m9.gz
37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.26 sec
Start 38: test_search_blastp_fm_sam.bz2
38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.29 sec
Start 39: test_search_blastx_sa_m0
39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 0.65 sec
Start 40: test_search_blastx_sa_m8
40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 0.56 sec
Start 41: test_search_blastx_sa_m9
41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 0.56 sec
Start 42: test_search_blastx_sa_sam
42/80 Test #42: test_search_blastx_sa_sam ........ Passed 0.65 sec
Start 43: test_search_blastx_sa_bam
43/80 Test #43: test_search_blastx_sa_bam ........ Passed 0.61 sec
Start 44: test_search_blastx_sa_m9.gz
44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 0.65 sec
Start 45: test_search_blastx_sa_sam.bz2
45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 0.94 sec
Start 46: test_search_blastx_fm_m0
46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 0.71 sec
Start 47: test_search_blastx_fm_m8
47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 0.61 sec
Start 48: test_search_blastx_fm_m9
48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 0.64 sec
Start 49: test_search_blastx_fm_sam
49/80 Test #49: test_search_blastx_fm_sam ........ Passed 0.67 sec
Start 50: test_search_blastx_fm_bam
50/80 Test #50: test_search_blastx_fm_bam ........ Passed 0.64 sec
Start 51: test_search_blastx_fm_m9.gz
51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 0.67 sec
Start 52: test_search_blastx_fm_sam.bz2
52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 0.95 sec
Start 53: test_search_tblastn_sa_m0
53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 0.71 sec
Start 54: test_search_tblastn_sa_m8
54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.60 sec
Start 55: test_search_tblastn_sa_m9
55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 0.63 sec
Start 56: test_search_tblastn_sa_sam
56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.62 sec
Start 57: test_search_tblastn_sa_bam
57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.58 sec
Start 58: test_search_tblastn_sa_m9.gz
58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 0.64 sec
Start 59: test_search_tblastn_sa_sam.bz2
59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 0.82 sec
Start 60: test_search_tblastn_fm_m0
60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 0.69 sec
Start 61: test_search_tblastn_fm_m8
61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 0.63 sec
Start 62: test_search_tblastn_fm_m9
62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.59 sec
Start 63: test_search_tblastn_fm_sam
63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.59 sec
Start 64: test_search_tblastn_fm_bam
64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.61 sec
Start 65: test_search_tblastn_fm_m9.gz
65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 0.64 sec
Start 66: test_search_tblastn_fm_sam.bz2
66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 0.83 sec
Start 67: test_search_tblastx_sa_m0
67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 2.55 sec
Start 68: test_search_tblastx_sa_m8
68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 2.10 sec
Start 69: test_search_tblastx_sa_m9
69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 2.08 sec
Start 70: test_search_tblastx_sa_sam
70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 2.26 sec
Start 71: test_search_tblastx_sa_bam
71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 2.19 sec
Start 72: test_search_tblastx_sa_m9.gz
72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 2.34 sec
Start 73: test_search_tblastx_sa_sam.bz2
73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 4.02 sec
Start 74: test_search_tblastx_fm_m0
74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 2.46 sec
Start 75: test_search_tblastx_fm_m8
75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 2.00 sec
Start 76: test_search_tblastx_fm_m9
76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 2.03 sec
Start 77: test_search_tblastx_fm_sam
77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 2.21 sec
Start 78: test_search_tblastx_fm_bam
78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 2.25 sec
Start 79: test_search_tblastx_fm_m9.gz
79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 2.22 sec
Start 80: test_search_tblastx_fm_sam.bz2
80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 3.94 sec
100% tests passed, 0 tests failed out of 80
Total Test time (real) = 78.34 sec
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--builddirectory=build
dh_prep -O--builddirectory=build
dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build
cd build && make -j8 install DESTDIR=/<<PKGBUILDDIR>>/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles /<<PKGBUILDDIR>>/build//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend
make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
[ 25%] Linking CXX executable ../bin/lambda
[ 50%] Linking CXX executable ../bin/lambda_indexer
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++.isra’ at /usr/include/seqan/index/pipe_merger3.h:127:17:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘operator++.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process’ at /usr/include/seqan/index/index_skew7.h:345:26,
inlined from ‘__ct_base ’ at /usr/include/seqan/index/index_skew7.h:312:20:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘__ct_base ’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:18,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:11,
inlined from ‘_toText’ at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551552’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_toText’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:280:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:290:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘insertStream’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators.isra’ at /usr/include/seqan/index/find2_backtracking.h:707:0:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_popIterators.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In member function ‘process.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50,
inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31,
inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24,
inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign.constprop.isra’ at /usr/include/seqan/pipe/pool_base.h:1369:42:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘assign.constprop.isra’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file,CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[ 75%] Built target lambda_indexer
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In function ‘allocate’,
inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28,
inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83,
inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1665:1,
inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20,
inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45,
inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:0,
inlined from ‘resize’ at /usr/include/seqan/sequence/sequence_interface.h:1149:0,
inlined from ‘eraseBack’ at /usr/include/seqan/sequence/sequence_interface.h:1259:0,
inlined from ‘_popIterators’ at /usr/include/seqan/index/find2_backtracking.h:707:0,
inlined from ‘_pushState’ at /usr/include/seqan/index/find2_backtracking.h:442:18,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1311:31,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1315:30,
inlined from ‘_find’ at /usr/include/seqan/index/find2_backtracking.h:1281:1,
inlined from ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’ at /usr/include/seqan/index/find2_backtracking.h:1315:30:
/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551440’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
211 | data = (TValue *) operator new(count * sizeof(TValue));
| ^
/usr/include/c++/14/new: In function ‘_ZN5seqan5_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0’:
/usr/include/c++/14/new:131:26: note: in a call to allocation function ‘operator new’ declared here
131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
| ^
In member function ‘operator++’,
inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13,
inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42,
inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22,
inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:317:20:
/usr/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
470 | outRef->i2.i[skipped++] = 0;
| ^
/usr/include/seqan/basic/tuple_base.h: In member function ‘process.isra’:
/usr/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object ‘i’ of size 7
141 | typename StoredTupleValue_<TValue>::Type i[SIZE];
| ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=8 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic -Wl,--dependency-file,CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[100%] Built target lambda
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align/usr/bin/lambda
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align/usr/bin/lambda_indexer
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align/usr/share/doc/lambda/README.rst
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
find debian -name "LICENSE*.rst" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -O--builddirectory=build
dh_installchangelogs -O--builddirectory=build
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
./build/bin/lambda --export-help man \
| sed -r 's/(number of threads.*) Default:.*/\1/g' \
| sed -r 's/\(Git commit +\)//g' > lambda.1
mkdir: cannot create directory ‘/sbuild-nonexistent’: Permission denied
./build/bin/lambda_indexer --export-help man \
| sed -r 's/(number of threads.*) Default:.*/\1/g' \
| sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \
| sed -r 's/\(Git commit +\)//g' > lambda_indexer.1
mkdir: cannot create directory ‘/sbuild-nonexistent’: Permission denied
dh_installman --
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installinit -O--builddirectory=build
dh_installsystemduser -O--builddirectory=build
dh_perl -O--builddirectory=build
dh_link -O--builddirectory=build
dh_strip_nondeterminism -O--builddirectory=build
dh_compress -O--builddirectory=build
dh_fixperms -O--builddirectory=build
dh_missing -O--builddirectory=build
dh_dwz -O--builddirectory=build
dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present
dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -O--builddirectory=build
dh_makeshlibs -O--builddirectory=build
dh_shlibdeps -O--builddirectory=build
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -O--builddirectory=build
dh_gencontrol -O--builddirectory=build
dh_md5sums -O--builddirectory=build
dh_builddeb -O--builddirectory=build
dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-6_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-6_arm64.buildinfo
dpkg-genchanges --build=binary -O../lambda-align_1.0.3-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-16T20:52:54Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
lambda-align_1.0.3-6_arm64.changes:
-----------------------------------
Format: 1.8
Date: Sat, 08 Feb 2020 16:22:53 +0100
Source: lambda-align
Binary: lambda-align
Architecture: arm64
Version: 1.0.3-6
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
lambda-align - Local Aligner for Massive Biological DatA
Changes:
lambda-align (1.0.3-6) unstable; urgency=medium
.
* Reset CMAKE_BUILD_TYPE to "Release" for reproducibility.
Checksums-Sha1:
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Checksums-Sha256:
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Files:
47ea4651f35f65b299dbfe3148fb30db 5717 science optional lambda-align_1.0.3-6_arm64.buildinfo
d5a1f241af6dab06a5eefbaba1170183 1265804 science optional lambda-align_1.0.3-6_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: lambda-align
Binary: lambda-align
Architecture: arm64
Version: 1.0.3-6
Checksums-Md5:
d5a1f241af6dab06a5eefbaba1170183 1265804 lambda-align_1.0.3-6_arm64.deb
Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Sat, 16 Nov 2024 20:52:54 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-11),
bsdutils (= 1:2.40.2-11),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
cmake (= 3.31.0-1),
cmake-data (= 3.31.0-1),
coreutils (= 9.5-1+b1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-8),
cpp-14-aarch64-linux-gnu (= 14.2.0-8),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-9+b1),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.21),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1+b1),
dpkg (= 1.22.12~1.gbp82cafd),
dpkg-dev (= 1.22.12~1.gbp82cafd),
dwz (= 0.15-1+b1),
file (= 1:5.45-3+b1),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-8),
g++-14-aarch64-linux-gnu (= 14.2.0-8),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-8),
gcc-14-aarch64-linux-gnu (= 14.2.0-8),
gcc-14-base (= 14.2.0-8),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4+b1),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1+b1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+b1),
libarchive-zip-perl (= 1.68-1),
libarchive13t64 (= 3.7.4-1.1),
libasan8 (= 14.2.0-8),
libatomic1 (= 14.2.0-8),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.2-2),
libaudit1 (= 1:4.0.2-2),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-11),
libbrotli1 (= 1.1.0-2+b6),
libbz2-1.0 (= 1.0.8-6),
libbz2-dev (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3+b1),
libcap2 (= 1:2.66-5+b1),
libcc1-0 (= 14.2.0-8),
libcom-err2 (= 1.47.1-1+b1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcurl4t64 (= 8.11.0-1),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.273),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.12~1.gbp82cafd),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.4-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-8),
libgcc-s1 (= 14.2.0-8),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-2+b2),
libgnutls30t64 (= 3.8.8-2),
libgomp1 (= 14.2.0-8),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhogweed6t64 (= 3.10-1+b1),
libhwasan0 (= 14.2.0-8),
libicu72 (= 72.1-5+b1),
libidn2-0 (= 2.3.7-2+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-8),
libjansson4 (= 2.14-2+b3),
libjsoncpp26 (= 1.9.6-2),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-4),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
libldap-2.5-0 (= 2.5.18+dfsg-3+b1),
liblsan0 (= 14.2.0-8),
liblz4-1 (= 1.9.4-3+b1),
liblzma5 (= 5.6.3-1+b1),
libmagic-mgc (= 1:5.45-3+b1),
libmagic1t64 (= 1:5.45-3+b1),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.2-11),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.1-1+b2),
libncursesw6 (= 6.5-2+b1),
libnettle8t64 (= 3.10-1+b1),
libnghttp2-14 (= 1.64.0-1),
libp11-kit0 (= 0.25.5-2+b1),
libpam-modules (= 1.5.3-7+b1),
libpam-modules-bin (= 1.5.3-7+b1),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7+b1),
libpcre2-8-0 (= 10.44-4),
libperl5.40 (= 5.40.0-7),
libpipeline1 (= 1.5.8-1),
libproc2-0 (= 2:4.0.4-6),
libpsl5t64 (= 0.21.2-1.1+b1),
librhash1 (= 1.4.5-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5),
libsasl2-2 (= 2.1.28+dfsg1-8),
libsasl2-modules-db (= 2.1.28+dfsg1-8),
libseccomp2 (= 2.5.5-1+b3),
libselinux1 (= 3.7-3+b1),
libseqan2-dev (= 2.4.0+dfsg-16),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-11),
libssh2-1t64 (= 1.11.1-1),
libssl3t64 (= 3.3.2-2),
libstdc++-14-dev (= 14.2.0-8),
libstdc++6 (= 14.2.0-8),
libsystemd0 (= 257~rc2-3),
libtasn1-6 (= 4.19.0-3+b3),
libtinfo6 (= 6.5-2+b1),
libtool (= 2.4.7-8),
libtsan2 (= 14.2.0-8),
libubsan1 (= 14.2.0-8),
libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257~rc2-3),
libunistring5 (= 1.2-1+b1),
libuuid1 (= 2.40.2-11),
libuv1t64 (= 1.48.0-7),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
libxxhash0 (= 0.8.2-2+b2),
libzstd1 (= 1.5.6+dfsg-1+b1),
linux-libc-dev (= 6.11.7-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1+b1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2+b1),
openssl (= 3.3.2-2),
openssl-provider-legacy (= 3.3.2-2),
patch (= 2.7.6-7+b1),
perl (= 5.40.0-7),
perl-base (= 5.40.0-7),
perl-modules-5.40 (= 5.40.0-7),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-6),
rpcsvc-proto (= 1.4.3-1+b1),
sed (= 4.9-2+b1),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3+b1),
util-linux (= 2.40.2-11),
xz-utils (= 5.6.3-1+b1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="en_US.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1581175373"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
lambda-align_1.0.3-6_arm64.deb
------------------------------
new Debian package, version 2.0.
size 1265804 bytes: control archive=1024 bytes.
794 bytes, 16 lines control
540 bytes, 8 lines md5sums
Package: lambda-align
Version: 1.0.3-6
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6624
Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libstdc++6 (>= 14), zlib1g (>= 1:1.1.4)
Suggests: cwl-runner
Section: science
Priority: optional
Homepage: https://seqan.github.io/lambda
Description: Local Aligner for Massive Biological DatA
Lambda is a local biosequence aligner optimized for many query sequences
and searches in protein space. It is compatible to the de facto standard tool
BLAST, but often outperforms the best currently available alternatives at
reproducing BLAST’s results and is the fastest compared with the current
state of the art at comparable levels of sensitivity.
drwxr-xr-x root/root 0 2020-02-08 15:22 ./
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/bin/
-rwxr-xr-x root/root 4525392 2020-02-08 15:22 ./usr/bin/lambda
-rwxr-xr-x root/root 2231544 2020-02-08 15:22 ./usr/bin/lambda_indexer
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/doc/lambda-align/
-rw-r--r-- root/root 375 2020-01-09 07:07 ./usr/share/doc/lambda-align/README.Debian
-rw-r--r-- root/root 608 2020-02-08 15:22 ./usr/share/doc/lambda-align/changelog.Debian.gz
-rw-r--r-- root/root 2887 2020-01-09 07:07 ./usr/share/doc/lambda-align/copyright
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/doc/lambda/
-rw-r--r-- root/root 2236 2018-02-16 18:56 ./usr/share/doc/lambda/README.rst.gz
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/man/
drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/man/man1/
-rw-r--r-- root/root 3222 2020-02-08 15:22 ./usr/share/man/man1/lambda.1.gz
-rw-r--r-- root/root 1835 2020-02-08 15:22 ./usr/share/man/man1/lambda_indexer.1.gz
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
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(Reading database ... 27407 files and directories currently installed.)
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Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
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Running lintian...
W: lambda-align changes: distribution-and-changes-mismatch sid unstable
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 185312
Build-Time: 261
Distribution: sid
Host Architecture: arm64
Install-Time: 22
Job: /tmp/debusine-fetch-exec-upload-953x6kio/lambda-align_1.0.3-6.dsc
Lintian: warn
Machine Architecture: arm64
Package: lambda-align
Package-Time: 319
Source-Version: 1.0.3-6
Space: 185312
Status: successful
Version: 1.0.3-6
--------------------------------------------------------------------------------
Finished at 2024-11-16T20:52:54Z
Build needed 00:05:19, 185312k disk space