Index

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All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

a - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
a - Variable in class net.imglib2.util.ValuePair
 
a - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
A - Enum constant in enum net.imglib2.converter.ChannelARGBConverter.Channel
 
A - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
AbstractARGBDoubleType<T> - Class in net.imglib2.type.numeric
 
AbstractARGBDoubleType() - Constructor for class net.imglib2.type.numeric.AbstractARGBDoubleType
 
AbstractArrayColorTable<T> - Class in net.imglib2.display
Abstract superclass for array-based color lookup tables.
AbstractArrayColorTable(T...) - Constructor for class net.imglib2.display.AbstractArrayColorTable
Initializes a color table with the given table values.
AbstractArrayCursor<T> - Class in net.imglib2.img.array
AbstractArrayCursor(AbstractArrayCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayLocalizingCursor<T> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
AbstractArrayLocalizingCursor(AbstractArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractArrayLocalizingCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractBit64Type<T> - Class in net.imglib2.type
A Type with arbitrary bit depth up to maximum 64 bits.
AbstractBit64Type(int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(long, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(LongAccess, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBitType<T> - Class in net.imglib2.type
Provides basic infrastructure to implement Types based on single bits stored in a LongAccess
AbstractBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBitType
 
AbstractByteArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractCellImg<T,A,C,I> - Class in net.imglib2.img.cell
Abstract superclass for Img types that divide their underlying data into cells.
AbstractCellImg(CellGrid, I, Fraction) - Constructor for class net.imglib2.img.cell.AbstractCellImg
 
AbstractCellImg.CellImgSampler<C> - Interface in net.imglib2.img.cell
This interface is implemented by all samplers on the AbstractCellImg.
AbstractCharArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractComplexType<T> - Class in net.imglib2.type.numeric.complex
TODO
AbstractComplexType() - Constructor for class net.imglib2.type.numeric.complex.AbstractComplexType
 
AbstractComposite<T> - Class in net.imglib2.view.composite
Abstract implementation of Composite.
AbstractComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.AbstractComposite
 
AbstractConvertedCursor<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedCursor(Cursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedCursor
 
AbstractConvertedIterableInterval<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableInterval(IterableInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableInterval
 
AbstractConvertedIterableRandomAccessibleInterval<A,B,S> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableRandomAccessibleInterval(S) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
AbstractConvertedRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccess(RandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccess
 
AbstractConvertedRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccessible(RandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessible
 
AbstractConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter
 
AbstractConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
AbstractConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccess(RealRandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
AbstractConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccessible(RealRandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
AbstractCursor<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursor(int) - Constructor for class net.imglib2.AbstractCursor
 
AbstractCursorInt<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursorInt(int) - Constructor for class net.imglib2.AbstractCursorInt
 
AbstractDoubleArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractEuclideanSpace - Class in net.imglib2
Superclass of abstract EuclideanSpace implementations (accessors, containers, etc).
AbstractEuclideanSpace(int) - Constructor for class net.imglib2.AbstractEuclideanSpace
 
AbstractFloatArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractImg<T> - Class in net.imglib2.img
TODO
AbstractImg(long[]) - Constructor for class net.imglib2.img.AbstractImg
 
AbstractIntArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntegerBitType<T> - Class in net.imglib2.type.numeric.integer
The performance of this type is traded off for the gain in memory storage.
AbstractIntegerBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
AbstractIntegerType<T> - Class in net.imglib2.type.numeric.integer
TODO
AbstractIntegerType() - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerType
 
AbstractInterval - Class in net.imglib2
Implementation of the Interval interface.
AbstractInterval(int) - Constructor for class net.imglib2.AbstractInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractInterval(long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractInterval(long[], long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(Dimensions) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractInterval(Interval) - Constructor for class net.imglib2.AbstractInterval
Creates a AbstractInterval from another Interval
AbstractLinearRange - Class in net.imglib2.display
 
AbstractLinearRange() - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLinearRange(double, double) - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear array (an ArrayList or similar).In principle, the number of entities stored is limited to Integer.MAX_VALUE.
AbstractListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractListImg
 
AbstractLocalizable - Class in net.imglib2
An abstract class that implements the Localizable interface using a long[] array to maintain position.
AbstractLocalizable(int) - Constructor for class net.imglib2.AbstractLocalizable
 
AbstractLocalizable(long[]) - Constructor for class net.imglib2.AbstractLocalizable
Protected constructor that re-uses the passed position array.
AbstractLocalizableInt - Class in net.imglib2
An abstract class that implements the Localizable interface using an int[] array to maintain position.
AbstractLocalizableInt(int) - Constructor for class net.imglib2.AbstractLocalizableInt
 
AbstractLocalizableInt(int[]) - Constructor for class net.imglib2.AbstractLocalizableInt
Protected constructor that re-uses the passed position array.
AbstractLocalizingCursor<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursor(int) - Constructor for class net.imglib2.AbstractLocalizingCursor
 
AbstractLocalizingCursorInt<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursorInt(int) - Constructor for class net.imglib2.AbstractLocalizingCursorInt
 
AbstractLongArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear list addressed by a long.
AbstractLongListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractLongListImg
 
AbstractLongListImg.LongListCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListLocalizingCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListRandomAccess - Class in net.imglib2.img.list
 
AbstractMixedTransform - Class in net.imglib2.transform.integer
TODO
AbstractMixedTransform(int) - Constructor for class net.imglib2.transform.integer.AbstractMixedTransform
 
AbstractNativeImg<T,A> - Class in net.imglib2.img
TODO
AbstractNativeImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeImg
 
AbstractNativeType<T> - Class in net.imglib2.type
TODO
AbstractNativeType() - Constructor for class net.imglib2.type.AbstractNativeType
 
AbstractNumericComposite<T,C> - Class in net.imglib2.view.composite
Abstract base class for a vector of NumericType scalars.
AbstractNumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.AbstractNumericComposite
 
AbstractOutOfBoundsMirror<T> - Class in net.imglib2.outofbounds
Abstract implementation of shared functions for mirroring out of bounds.
AbstractOutOfBoundsMirror(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsMirror(AbstractOutOfBoundsMirror<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsValue<T> - Class in net.imglib2.outofbounds
 
AbstractOutOfBoundsValue(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractOutOfBoundsValue(AbstractOutOfBoundsValue<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractPermutationTransform - Class in net.imglib2.transform.integer.permutation
Bijective integer transform mapping between integer coordinates in [0,n-1].
AbstractPermutationTransform(int[]) - Constructor for class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
AbstractPositionableTransform<LocalizablePositionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to somehow derived discrete coordinates.
AbstractPositionableTransform(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.AbstractPositionableTransform
 
AbstractProjector2D - Class in net.imglib2.display.projector
Base class for 2D projectors.
AbstractProjector2D(int) - Constructor for class net.imglib2.display.projector.AbstractProjector2D
initializes a reference point with the specified number of dimensions.
AbstractRealInterval - Class in net.imglib2
Implementation of the RealInterval interface.
AbstractRealInterval(double[], double[]) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealInterval(int) - Constructor for class net.imglib2.AbstractRealInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractRealInterval(RealInterval) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval using an existing RealInterval
AbstractRealLocalizable - Class in net.imglib2
An abstract class that implements the RealLocalizable interface using an array of doubles to maintain position
AbstractRealLocalizable(double[]) - Constructor for class net.imglib2.AbstractRealLocalizable
Protected constructor that re-uses the passed position array.
AbstractRealLocalizable(int) - Constructor for class net.imglib2.AbstractRealLocalizable
 
AbstractRealType<T> - Class in net.imglib2.type.numeric.real
TODO
AbstractRealType() - Constructor for class net.imglib2.type.numeric.real.AbstractRealType
 
AbstractShearTransform - Class in net.imglib2.transform.integer.shear
Most simple case of a shear transform that just implements for a integer valued coordinate: coordinate[ shearDimension ] += coordinate[ referenceDimension ] (forward) coordinate[ shearDimension ] -= coordinate[ referenceDimension ] (backward) This abstract class holds the inverse and implements applyInverse in terms of inverse.apply
AbstractShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShortArray<A> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractVolatileByteArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileCharArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileDoubleArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileFloatArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileIntArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileLongArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileNumericType<N,T> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileNumericTypes that wrap a NumericType that is either VALID or INVALID.
AbstractVolatileNumericType(N) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileRealType<R,T> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileRealTypes that wrap RealType.
AbstractVolatileRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileRealType
 
AbstractVolatileShortArray<A> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractWrappedInterval<I> - Class in net.imglib2
Convenient base class for IterableIntervals, RandomAccessibleIntervals, etc that forward the Interval interface to, for example, their source accessible.
AbstractWrappedInterval(I) - Constructor for class net.imglib2.AbstractWrappedInterval
 
AbstractWrappedRealInterval<I> - Class in net.imglib2
Convenient base class for IterableRealIntervals, etc that forward the RealInterval interface to, for example, their source accessible.
AbstractWrappedRealInterval(I) - Constructor for class net.imglib2.AbstractWrappedRealInterval
 
accA - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accB - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accessAxes - Variable in class net.imglib2.view.HyperSlicesView
 
accG - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accR - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accumulate(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
accumulator - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
add(double) - Method in class net.imglib2.util.RealSum
Add an element to the sum.
add(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A + B.
add(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a + b.
add(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
add(Point, T) - Method in class net.imglib2.PointSampleList
 
add(RealPoint, T) - Method in class net.imglib2.RealPointSampleList
 
add(BitType) - Method in class net.imglib2.type.logic.BitType
 
add(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
add(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
add(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
add(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
add(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
add(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
add(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
add(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
add(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
add(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
add(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
add(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
add(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
add(T) - Method in interface net.imglib2.type.operators.Add
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
Add<T> - Interface in net.imglib2.type.operators
 
addData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts additional data contained in a given iterable collection.
addData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addDimension(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessible .
addDimension(RandomAccessibleInterval<T>, long, long) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessibleInterval.
alpha - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
alpha(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
ALPHA - Static variable in interface net.imglib2.display.ColorTable
 
and(boolean) - Method in class net.imglib2.type.logic.BoolType
 
and(BitType) - Method in class net.imglib2.type.logic.BitType
 
and(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
and(T) - Method in interface net.imglib2.type.BooleanType
 
angleFromR(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the angle of rotation from a rotation matrix.
apply(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(int[], int[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(long[], long[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(long[], long[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.InverseTransform
 
apply(Localizable, Positionable) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source Localizable to obtain a target Positionable.
applyChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInverse(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(int[], int[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(long[], long[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(Positionable, Localizable) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target Localizable to obtain a source Positionable.
applyInverseChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
argb(int) - Method in class net.imglib2.display.AbstractArrayColorTable
 
argb(int) - Method in interface net.imglib2.display.ArrayColorTable
Converts the tuple at the given position into a packed ARGB value.
ARGB_COLOR_MODEL - Static variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBARGBDoubleConverter<T> - Class in net.imglib2.converter
 
ARGBARGBDoubleConverter() - Constructor for class net.imglib2.converter.ARGBARGBDoubleConverter
 
argbChannel(RandomAccessible<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessible to one of the four channels encoded in a RandomAccessible of ARGBType.
argbChannel(RandomAccessibleInterval<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessibleInterval to one of the four channels encoded in a RandomAccessibleInterval of ARGBType.
argbChannels(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
argbChannels(RandomAccessibleInterval<ARGBType>, int...) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
ARGBChannelSamplerConverter - Class in net.imglib2.converter.readwrite
Access the on channel of an ARGBType as an UnsignedByteType.
ARGBChannelSamplerConverter(int) - Constructor for class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
ARGBDoubleARGBConverter<T> - Class in net.imglib2.converter
 
ARGBDoubleARGBConverter() - Constructor for class net.imglib2.converter.ARGBDoubleARGBConverter
 
ARGBDoubleType - Class in net.imglib2.type.numeric
 
ARGBDoubleType() - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
argbs(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntArray> reusing a passed int[] array.
argbs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
argbs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
argbs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntAccess> using a IntAccess passed as argument.
ARGBScreenImage - Class in net.imglib2.display.screenimage.awt
 
ARGBScreenImage(int, int) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBScreenImage(int, int, int[]) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBScreenImage(int, int, IntArray) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBType - Class in net.imglib2.type.numeric
A native NumericType that encodes four channels at unsigned byte precision into one 32bit signed integer which is the format used in most display oriented image processing libraries such as AWT or ImageJ.
ARGBType() - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(int) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(IntAccess) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ArrayColorTable<T> - Interface in net.imglib2.display
Interface for all ColorTable implementations that use an array to store their color table information.
ArrayCursor<T> - Class in net.imglib2.img.array
ArrayCursor(ArrayCursor<T>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.array
Trivial interface for primitive array based data access implementations that can replicate themselves and return the underlying array.
ArrayImg<T,A> - Class in net.imglib2.img.array
This Img stores an image in a single linear array of basic types.
ArrayImg(A, long[], Fraction) - Constructor for class net.imglib2.img.array.ArrayImg
 
ArrayImgAWTScreenImage<T,A> - Class in net.imglib2.display.screenimage.awt
An AWTScreenImage that is an ArrayImg.
ArrayImgAWTScreenImage(ArrayImg<T, A>) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgAWTScreenImage(T, A, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgFactory<T> - Class in net.imglib2.img.array
 
ArrayImgFactory() - Constructor for class net.imglib2.img.array.ArrayImgFactory
 
ArrayImgs - Class in net.imglib2.img.array
Convenience factory methods for creation of ArrayImg instances with the most common pixel Type variants.
ArrayImgXYByteProjector<A> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ByteType ArrayImg.
ArrayImgXYByteProjector(ArrayImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
Normalizes an ArrayImg and writes the result into target.
ArrayImgXYShortProjector<A> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType ArrayImg.
ArrayImgXYShortProjector(ArrayImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
Normalizes an ArrayImg and writes the result into target.
ArrayLocalizingCursor<T> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
ArrayLocalizingCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingCursor(ArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor<T> - Class in net.imglib2.img.array
ArrayLocalizingSubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor(ArrayLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayRandomAccess<T> - Class in net.imglib2.img.array
ArrayRandomAccess(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArrayRandomAccess(ArrayRandomAccess<T>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArraySubIntervalCursor<T> - Class in net.imglib2.img.array
ArraySubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
ArraySubIntervalCursor(ArraySubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
average(double[]) - Static method in class net.imglib2.util.Util
 
average(float[]) - Static method in class net.imglib2.util.Util
 
averageDouble(List<Double>) - Static method in class net.imglib2.util.Util
 
averageFloat(List<Float>) - Static method in class net.imglib2.util.Util
 
AWTScreenImage - Interface in net.imglib2.display.screenimage.awt
A ScreenImage that produces AWT Image objects.
AWTScreenImageUtil - Class in net.imglib2.display.screenimage.awt
Utility class to create AWTScreenImages.
AWTScreenImageUtil() - Constructor for class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
 
axes - Variable in class net.imglib2.view.HyperSlice
 
axisFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the axis of rotation from a rotation matrix.

B

b - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
b - Variable in class net.imglib2.util.ValuePair
 
b - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
B - Enum constant in enum net.imglib2.converter.ChannelARGBConverter.Channel
 
background - Variable in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
BasePairBitType - Class in net.imglib2.type.label
Representation of base pairs using 3 bits per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairBitType() - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType.Base - Enum in net.imglib2.type.label
 
BasePairCharType - Class in net.imglib2.type.label
Representation of base pairs using one char per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairCharType() - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(char) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(NativeImg<?, ? extends CharAccess>) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairType<T> - Interface in net.imglib2.type
TODO
baseToValue() - Method in interface net.imglib2.type.BasePairType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairBitType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairCharType
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
bck(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
bck(int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.ListRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
bck(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
bck(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
bck(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
bck(int) - Method in class net.imglib2.Point
 
bck(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
bck(int) - Method in interface net.imglib2.Positionable
Move by -1 in one dimension.
bck(int) - Method in class net.imglib2.RealPoint
 
bck(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
bck(int) - Method in class net.imglib2.view.MixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
bck(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
bck(int) - Method in class net.imglib2.view.SlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
bck(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
bck(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
bck(int) - Method in class net.imglib2.view.TransformRandomAccess
 
bck(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
bckDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves one step backward in dimension 0
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
benchmark(int, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and record the milliseconds taken for each run.
benchmarkAndPrint(int, boolean, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and print the results to System.out .
BenchmarkHelper - Class in net.imglib2.util
Tools for setting up basic benchmarks.
BenchmarkHelper() - Constructor for class net.imglib2.util.BenchmarkHelper
 
bestPoint - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestPoints - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
bestSquDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestSquDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
BinMapper1d<T> - Interface in net.imglib2.histogram
An interface for defining a bin mapping algorithm.
Binning - Class in net.imglib2.util
Static utility methods to convert from a value to a bin, useful for dealing with histograms and LUTs.
Binning() - Constructor for class net.imglib2.util.Binning
 
bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bits(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<BitType, LongAccess> using a LongAccess passed as argument.
BitType - Class in net.imglib2.type.logic
TODO
BitType() - Constructor for class net.imglib2.type.logic.BitType
 
BitType(boolean) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(LongAccess) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.logic.BitType
 
blue(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
BLUE - Static variable in interface net.imglib2.display.ColorTable
 
BooleanNtree - Class in net.imglib2.img.sparse
BitAccess based on a Ntree<Boolean>.
BooleanNtree(long[], long[], boolean) - Constructor for class net.imglib2.img.sparse.BooleanNtree
 
BooleanType<T> - Interface in net.imglib2.type
TODO
BoolType - Class in net.imglib2.type.logic
A BooleanType wrapping a single primitive boolean variable.
BoolType() - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(boolean) - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(T) - Constructor for class net.imglib2.type.logic.BoolType
 
boundary - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
Bounded - Interface in net.imglib2.outofbounds
Interface implemented by entities (Samplers, Positionables, Localizables) that can tell whether they are currently located outside of the image boundaries.
boundingBox - Variable in class net.imglib2.view.TransformBuilder
Interval transformed to the currently visited view.
BoundingBox - Class in net.imglib2.transform.integer
TODO
BoundingBox(int) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(long[], long[]) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(Interval) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBoxTransform - Interface in net.imglib2.transform.integer
Implemented by Transforms that can transform (easily) a BoundingBox in the source space to a bounding box in the target space.
build() - Method in class net.imglib2.view.TransformBuilder
Create a sequence of wrapped RandomAccessibles from the TransformBuilder.transforms list.
buildIterableInterval() - Method in class net.imglib2.view.iteration.IterableTransformBuilder
Create an IterableInterval on the Interval specified in the constructor of the RandomAccessible specified in the constructor.
ByteAccess - Interface in net.imglib2.img.basictypeaccess
TODO
ByteArray - Class in net.imglib2.img.basictypeaccess.array
 
ByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
ByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
ByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ByteType, ByteArray>.
ByteAWTScreenImage(ArrayImg<ByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteAWTScreenImage(ByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteNtree - Class in net.imglib2.img.sparse
ByteAccess based on a Ntree<Byte>.
ByteNtree(long[], long[], Byte) - Constructor for class net.imglib2.img.sparse.ByteNtree
 
bytes - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
bytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteArray> reusing a passed byte[] array.
bytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
bytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteAccess> using a ByteAccess passed as argument.
ByteType - Class in net.imglib2.type.numeric.integer
TODO
ByteType() - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 

C

C - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
Cell<A> - Class in net.imglib2.img.cell
A cell of an AbstractCellImg.
Cell(int[], long[], A) - Constructor for class net.imglib2.img.cell.Cell
 
CellCursor<T,C> - Class in net.imglib2.img.cell
CellCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellCursor
 
CellCursor(CellCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellCursor
 
cellDimension(int) - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in a standard cell in a given dimension d.
cellDimensions(int[]) - Method in class net.imglib2.img.cell.CellGrid
Write the number of pixels in a standard cell in each dimension into long[].
cellDims - Variable in class net.imglib2.img.cell.CellRandomAccess
 
CellGrid - Class in net.imglib2.img.cell
Defines AbstractCellImg geometry and translates between image, cell, and grid coordinates.
CellGrid(long[], int[]) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellGrid(CellGrid) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellImg<T,A> - Class in net.imglib2.img.cell
 
CellImg(CellImgFactory<T>, CellGrid, ListImg<Cell<A>>, Fraction) - Constructor for class net.imglib2.img.cell.CellImg
 
CellImgFactory<T> - Class in net.imglib2.img.cell
Factory for creating CellImgs.
CellImgFactory() - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellImgFactory(int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellIterationOrder - Class in net.imglib2.img.cell
Iteration order for a CellImg.
CellIterationOrder(AbstractCellImg<?, ?, ?, ?>) - Constructor for class net.imglib2.img.cell.CellIterationOrder
 
CellLocalizingCursor<T,C> - Class in net.imglib2.img.cell
Localizing Cursor on a AbstractCellImg.
CellLocalizingCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellLocalizingCursor(CellLocalizingCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellRandomAccess<T,C> - Class in net.imglib2.img.cell
CellRandomAccess(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
CellRandomAccess(CellRandomAccess<T, C>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
cells - Variable in class net.imglib2.img.cell.AbstractCellImg
 
centerValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
Returns array of center values for each bin.
ChannelARGBConverter - Class in net.imglib2.converter
Convert UnsignedByteType into one channel of ARGBType.
ChannelARGBConverter(ChannelARGBConverter.Channel) - Constructor for class net.imglib2.converter.ChannelARGBConverter
 
ChannelARGBConverter.Channel - Enum in net.imglib2.converter
 
CharAccess - Interface in net.imglib2.img.basictypeaccess
TODO
CharArray - Class in net.imglib2.img.basictypeaccess.array
 
CharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
CharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
CharNtree - Class in net.imglib2.img.sparse
CharAccess based on a Ntree<Char>.
CharNtree(long[], long[], Character) - Constructor for class net.imglib2.img.sparse.CharNtree
 
checkBijectivity(int[]) - Static method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
checkInterval(Interval, int[]) - Static method in class net.imglib2.transform.integer.permutation.PermutationTransform
Test whether a given lut can be applied to an interval.
checkOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
clip - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
clone() - Method in class net.imglib2.util.Fraction
 
code - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Index into NLinearInterpolator.weights array.
collapse(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T> into an (n -1)-dimensional RandomAccessible<GenericComposite <T>>
collapse(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n-1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
collapseNumeric(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends NumericType <T>> into an (n-1)-dimensional RandomAccessible <NumericComposite<T>>
collapseNumeric(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseReal(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
collapseReal(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends RealType<T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
ColorTable - Interface in net.imglib2.display
 
ColorTable16 - Class in net.imglib2.display
16-bit color lookup table.
ColorTable16() - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with a linear grayscale ramp.
ColorTable16(short[]...) - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with the given table values.
ColorTable8 - Class in net.imglib2.display
8-bit color lookup table.
ColorTable8() - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with a linear grayscale ramp.
ColorTable8(byte[]...) - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with the given table values.
cols(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
compare(L, L) - Method in class net.imglib2.KDTree.DimComparator
 
compareTo(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
compareTo(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
compareTo(BitType) - Method in class net.imglib2.type.logic.BitType
 
compareTo(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
compareTo(LongType) - Method in class net.imglib2.type.numeric.integer.LongType
 
compareTo(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
compareTo(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
compareTo(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
compareTo(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
compareTo(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
compareTo(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
compareTo(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
compareTo(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
compareTo(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
complement() - Method in interface net.imglib2.type.BasePairType
 
complement() - Method in class net.imglib2.type.label.BasePairBitType
 
complement() - Method in class net.imglib2.type.label.BasePairCharType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
complexConjugate() - Method in interface net.imglib2.type.numeric.ComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
complexConjugate() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
complexDoubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleArray> reusing a passed double[] array.
complexDoubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexDoubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
complexDoubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexDoubleType, DoubleAccess> using a DoubleAccess passed as argument.
ComplexDoubleType - Class in net.imglib2.type.numeric.complex
TODO
ComplexDoubleType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
complexFloats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatArray> reusing a passed float[] array.
complexFloats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexFloats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
complexFloats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexFloatType, FloatAccess> using a FloatAccess passed as argument.
ComplexFloatType - Class in net.imglib2.type.numeric.complex
TODO
ComplexFloatType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexImaginaryFloatConverter<R> - Class in net.imglib2.converter
Returns the imaginary value of a complex value
ComplexImaginaryFloatConverter() - Constructor for class net.imglib2.converter.ComplexImaginaryFloatConverter
 
ComplexPhaseFloatConverter<R> - Class in net.imglib2.converter
Computes the phase spectrum for a complex value
ComplexPhaseFloatConverter() - Constructor for class net.imglib2.converter.ComplexPhaseFloatConverter
 
ComplexPowerFloatConverter<R> - Class in net.imglib2.converter
Computes the power spectrum for a complex value
ComplexPowerFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerFloatConverter
 
ComplexPowerGLogFloatConverter<R> - Class in net.imglib2.converter
Computes the generalized log of the power spectrum for a complex value
ComplexPowerGLogFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
ComplexRealFloatConverter<R> - Class in net.imglib2.converter
Returns the real value for of complex value
ComplexRealFloatConverter() - Constructor for class net.imglib2.converter.ComplexRealFloatConverter
 
ComplexType<T> - Interface in net.imglib2.type.numeric
TODO
component - Variable in class net.imglib2.transform.integer.ComponentMappingTransform
for each component of the target vector: from which source vector component should it be taken.
component - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
component - Variable in class net.imglib2.transform.integer.SlicingTransform
specifies for each component of the target vector from which source vector component should it be taken.
ComponentMapping - Interface in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform - Class in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform(int) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentMappingTransform(int[]) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
composite - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
Composite<T> - Interface in net.imglib2.view.composite
A Composite is a vector of scalars T.
CompositeChannelConverter<T,A> - Class in net.imglib2.converter
A converter to extract one channel of a Composite.
CompositeChannelConverter(long) - Constructor for class net.imglib2.converter.CompositeChannelConverter
 
compositeFactory - Variable in class net.imglib2.view.composite.CompositeView
 
CompositeFactory<T,C> - Interface in net.imglib2.view.composite
A factory to create a Composite vector of scalars T given a RandomAccess.
CompositeIntervalView<T,C> - Class in net.imglib2.view.composite
CompositeIntervalView(RandomAccessibleInterval<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeIntervalView
 
CompositeRandomAccess() - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRandomAccess(CompositeView.CompositeRandomAccess) - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeView<T,C> - Class in net.imglib2.view.composite
CompositeView collapses the trailing dimension of a RandomAccessible of T into a Composite of T.
CompositeView(RandomAccessible<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeView
 
CompositeView.CompositeRandomAccess - Class in net.imglib2.view.composite
 
CompositeXYProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYProjector(RandomAccessibleInterval<A>, IterableInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYProjector
 
CompositeXYRandomAccessibleProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYRandomAccessibleProjector(RandomAccessibleInterval<A>, RandomAccessibleInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
computeWeight(double) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
Concatenable<A> - Interface in net.imglib2.concatenate
If T implements Concatenable<A> that means you can concatenate it with an A, usually resulting in another T.
concatenate(int, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(A) - Method in interface net.imglib2.concatenate.Concatenable
Concatenate this object with a.
concatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
concatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
 
concatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
ConcatenateUtils - Class in net.imglib2.concatenate
Utilities for manipulating lists of (pre-)concatenable objects.
ConcatenateUtils() - Constructor for class net.imglib2.concatenate.ConcatenateUtils
 
constantRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
constantRandomAccessibleInterval(T, int, Interval) - Static method in class net.imglib2.util.ConstantUtils
 
constantRealRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
ConstantUtils - Class in net.imglib2.util
 
ConstantUtils() - Constructor for class net.imglib2.util.ConstantUtils
 
container - Variable in class net.imglib2.img.planar.PlanarCursor
 
container - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
contains(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
contains(Interval, Localizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
contains(RealInterval, RealLocalizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
convert(A, B) - Method in interface net.imglib2.converter.Converter
 
convert(A, T) - Method in class net.imglib2.converter.CompositeChannelConverter
 
convert(IterableInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create an IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
convert(Sampler<? extends A>) - Method in interface net.imglib2.converter.readwrite.SamplerConverter
 
convert(Sampler<? extends ARGBType>) - Method in class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealFloatSamplerConverter
 
convert(ARGBType, T) - Method in class net.imglib2.converter.ARGBARGBDoubleConverter
 
convert(UnsignedByteType, ARGBType) - Method in class net.imglib2.converter.ChannelARGBConverter
 
convert(VolatileRealType<?>, ARGBType) - Method in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealARGBConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealLUTConverter
 
convert(R, UnsignedByteType) - Method in class net.imglib2.converter.RealUnsignedByteConverter
 
convert(R, UnsignedShortType) - Method in class net.imglib2.converter.RealUnsignedShortConverter
 
convert(R, DoubleType) - Method in class net.imglib2.converter.RealDoubleConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexImaginaryFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPhaseFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexRealFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.RealFloatConverter
 
convert(T, ARGBType) - Method in class net.imglib2.converter.ARGBDoubleARGBConverter
 
convert(T, T) - Method in class net.imglib2.converter.TypeIdentity
 
converted - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converted - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
ConvertedCursor<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedCursor(Cursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
Creates a copy of b for conversion that can be accessed through ConvertedCursor.get().
ConvertedIterableInterval<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedIterableInterval(IterableInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
Creates a copy of b for conversion.
ConvertedRandomAccess<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccess(RandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
 
ConvertedRandomAccessible<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessible(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
 
ConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
ConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccess(RealRandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
 
ConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessible(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
ConvertedRealRandomAccessibleRealInterval<A,B> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
converter - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converter - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
converter - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
converter - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
converter - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
Converter<A,B> - Interface in net.imglib2.converter
 
converterListRGBA - Static variable in class net.imglib2.converter.ChannelARGBConverter
ChannelARGBConverter.converterListRGBA can be used in CompositeXYProjector to convert a 4-channel UnsignedByteType into composite ARGBType.
Converters - Class in net.imglib2.converter
Convenience factory methods for sample conversion.
Converters() - Constructor for class net.imglib2.converter.Converters
 
convertRandomAccessibleIterableInterval(S, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
coordinates - Variable in class net.imglib2.PointSampleList
 
coordinates - Variable in class net.imglib2.RealPointSampleList
 
copy() - Method in class net.imglib2.AbstractCursor
 
copy() - Method in class net.imglib2.AbstractCursorInt
 
copy() - Method in class net.imglib2.AbstractLocalizingCursor
 
copy() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copy() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.read.ConvertedCursor
 
copy() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
copy() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
copy() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
copy() - Method in interface net.imglib2.histogram.BinMapper1d
Returns a copy of this BinMapper1d<T>.
copy() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
copy() - Method in class net.imglib2.histogram.Histogram1d
 
copy() - Method in class net.imglib2.histogram.HistogramNd
 
copy() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
copy() - Method in class net.imglib2.histogram.Real1dBinMapper
 
copy() - Method in class net.imglib2.img.array.ArrayCursor
 
copy() - Method in class net.imglib2.img.array.ArrayImg
 
copy() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
copy() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
copy() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
copy() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
copy() - Method in class net.imglib2.img.cell.CellCursor
 
copy() - Method in class net.imglib2.img.cell.CellImg
 
copy() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
copy() - Method in class net.imglib2.img.cell.CellRandomAccess
 
copy() - Method in class net.imglib2.img.cell.LazyCellImg
 
copy() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
copy() - Method in interface net.imglib2.img.Img
 
copy() - Method in class net.imglib2.img.ImgView
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
copy() - Method in class net.imglib2.img.list.ListCursor
 
copy() - Method in class net.imglib2.img.list.ListImg
 
copy() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
copy() - Method in class net.imglib2.img.list.ListRandomAccess
 
copy() - Method in class net.imglib2.img.planar.PlanarCursor
 
copy() - Method in class net.imglib2.img.planar.PlanarImg
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
copy() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
copy() - Method in class net.imglib2.img.sparse.NtreeCursor
 
copy() - Method in class net.imglib2.img.sparse.NtreeImg
 
copy() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
copy() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
copy() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
copy() - Method in class net.imglib2.KDTree.KDTreeCursor
 
copy() - Method in class net.imglib2.KDTree.SamplerNode
 
copy() - Method in class net.imglib2.KDTree.ValueNode
 
copy() - Method in class net.imglib2.KDTreeNode
 
copy() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Create a copy.
copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
copy() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Create a copy.
copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
copy() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
copy() - Method in interface net.imglib2.outofbounds.OutOfBounds
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
copy() - Method in interface net.imglib2.outofbounds.RealOutOfBounds
 
copy() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
copy() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
copy() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
copy() - Method in interface net.imglib2.Sampler
 
copy() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
copy() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
copy() - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
copy() - Method in class net.imglib2.type.label.BasePairBitType
 
copy() - Method in class net.imglib2.type.label.BasePairCharType
 
copy() - Method in class net.imglib2.type.logic.BitType
 
copy() - Method in class net.imglib2.type.logic.BoolType
 
copy() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
copy() - Method in class net.imglib2.type.numeric.ARGBType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
copy() - Method in class net.imglib2.type.numeric.integer.ByteType
 
copy() - Method in class net.imglib2.type.numeric.integer.IntType
 
copy() - Method in class net.imglib2.type.numeric.integer.LongType
 
copy() - Method in class net.imglib2.type.numeric.integer.ShortType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
copy() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
copy() - Method in class net.imglib2.type.numeric.real.DoubleType
 
copy() - Method in class net.imglib2.type.numeric.real.FloatType
 
copy() - Method in interface net.imglib2.type.Type
Creates a new Type variable that has the value of this Type
copy() - Method in class net.imglib2.type.volatiles.VolatileNumericType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileRealType
 
copy() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
copy() - Method in class net.imglib2.view.composite.NumericComposite
 
copy() - Method in class net.imglib2.view.composite.RealComposite
 
copy() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
copy() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
copy() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
copy() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
copy() - Method in class net.imglib2.view.iteration.SlicingCursor
copy() - Method in class net.imglib2.view.MixedRandomAccess
 
copy() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
copy() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
copy() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
copy() - Method in class net.imglib2.view.SlicingRandomAccess
 
copy() - Method in class net.imglib2.view.StackView.DefaultRA
 
copy() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
copy() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
copy() - Method in class net.imglib2.view.TransformRandomAccess
 
copy() - Method in class net.imglib2.view.TranslationRandomAccess
 
copy(boolean[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A, where A is a matrix.
copy(double[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
Copy a flat array of doubles into an Img.
copy(float[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(int[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(long[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, boolean[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, double[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
Copy the contents of an Img to a double array
copy(Img<T>, float[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, int[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, long[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copyCursor() - Method in class net.imglib2.AbstractCursor
 
copyCursor() - Method in class net.imglib2.AbstractCursorInt
 
copyCursor() - Method in class net.imglib2.AbstractLocalizingCursor
 
copyCursor() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copyCursor() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
copyCursor() - Method in interface net.imglib2.Cursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.cell.CellCursor
 
copyCursor() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.list.ListCursor
 
copyCursor() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
copyCursor() - Method in class net.imglib2.img.sparse.NtreeCursor
 
copyCursor() - Method in class net.imglib2.KDTree.KDTreeCursor
 
copyCursor() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
copyCursor() - Method in interface net.imglib2.RealCursor
 
copyCursor() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
copyCursor() - Method in class net.imglib2.view.iteration.SlicingCursor
copyCursor() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
copyDataTo(AbstractCellImg<T, ?, ?, ?>) - Method in class net.imglib2.img.cell.AbstractCellImg
 
copyRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.cell.CellRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.list.ListRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
copyRandomAccess() - Method in interface net.imglib2.RandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.MixedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
copyRandomAccess() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.SlicingRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.StackView.DefaultRA
 
copyRandomAccess() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
copyRandomAccess() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.TransformRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.TranslationRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
copyRealRandomAccess() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
copyRealRandomAccess() - Method in interface net.imglib2.RealRandomAccess
 
corner1 - Variable in class net.imglib2.transform.integer.BoundingBox
 
corner1(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
 
corner2 - Variable in class net.imglib2.transform.integer.BoundingBox
 
corner2(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
 
countData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts the data contained in the given data source using the underlying bin distribution.
countData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts the data contained in the given data source using the underlying bin distribution.
countData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts the data contained in the given data source using the underlying bin distribution.
create(int[], T) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(long[], T) - Method in class net.imglib2.img.array.ArrayImgFactory
 
create(long[], T) - Method in class net.imglib2.img.cell.CellImgFactory
 
create(long[], T) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(long[], T) - Method in class net.imglib2.img.list.ListImgFactory
 
create(long[], T) - Method in class net.imglib2.img.NativeImgFactory
This class will ask the Type to create a suitable Img for the Type and the dimensionality.
create(long[], T) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
create(long[], T) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
create(F) - Method in interface net.imglib2.interpolation.InterpolatorFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsBorderFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
create(F) - Method in interface net.imglib2.outofbounds.OutOfBoundsFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
create(F) - Method in interface net.imglib2.outofbounds.RealOutOfBoundsFactory
 
create(F, RealInterval) - Method in interface net.imglib2.interpolation.InterpolatorFactory
 
create(Supplier<T>, int[]) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(Supplier<T>, long...) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(Supplier<T>, Dimensions) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(Dimensions, T) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(Interval) - Static method in class net.imglib2.iterator.IntervalIterator
 
create(KNearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
Creates a new InverseDistanceWeightingInterpolator using a copy of the passed KNearestNeighborSearch.
create(KNearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
Creates a new InverseDistanceWeightingInterpolator using a copy of the passed KNearestNeighborSearch.
create(NearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
Creates a new NearestNeighborSearchInterpolator using a copy of the passed NearestNeighborSearch.
create(NearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
Creates a new NearestNeighborSearchInterpolator using a copy of the passed NearestNeighborSearch.
create(RandomAccess<T>) - Method in interface net.imglib2.view.composite.CompositeFactory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.GenericComposite.Factory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.NumericComposite.Factory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.RealComposite.Factory
 
create(RandomAccessible<ARGBType>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
 
create(RandomAccessible<ARGBType>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
 
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
 
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.IterableRandomAccessibleInterval
 
createAllocationSteps(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
Create allocation step array from the dimensions of an N-dimensional array.
createAllocationSteps(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
Create allocation step array from the dimensions of an N-dimensional array.
createArray(int) - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.CharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.FloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.IntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.LongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ShortArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 
createArray(int, boolean) - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileArrayDataAccess
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createDataBuffer(A) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
createDataBuffer(DoubleArray) - Method in class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
createDataBuffer(FloatArray) - Method in class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createGaussianKernel1DDouble(double, boolean) - Static method in class net.imglib2.util.Util
This method creates a gaussian kernel
createInstance(long[]) - Method in class net.imglib2.img.sparse.BooleanNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.ByteNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.CharNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.DoubleNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.FloatNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.IntNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.LongNtree
 
createInstance(long[]) - Method in interface net.imglib2.img.sparse.NtreeAccess
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.ShortNtree
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createLinkedType() - Method in class net.imglib2.img.AbstractNativeImg
 
createLinkedType() - Method in interface net.imglib2.img.NativeImg
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createMinMax(double...) - Static method in class net.imglib2.FinalRealInterval
Create a FinalRealInterval from a parameter list comprising minimum and maximum coordinates.
createMinMax(long...) - Static method in class net.imglib2.FinalInterval
Create a FinalInterval from a parameter list comprising minimum and maximum coordinates.
createMinMax(long...) - Static method in class net.imglib2.util.Intervals
Create a FinalInterval from a parameter list comprising minimum and maximum coordinates.
createMinMaxReal(double...) - Static method in class net.imglib2.util.Intervals
Create a FinalRealInterval from a parameter list comprising minimum and maximum coordinates.
createMinSize(double...) - Static method in class net.imglib2.FinalRealInterval
Deprecated.
createMinSize(long...) - Static method in class net.imglib2.FinalInterval
Create a FinalInterval from a parameter list comprising minimum coordinates and size.
createMinSize(long...) - Static method in class net.imglib2.util.Intervals
Create a FinalInterval from a parameter list comprising minimum coordinates and size.
createMinSizeReal(double...) - Static method in class net.imglib2.util.Intervals
Deprecated.
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createSuitableNativeImg(NativeImgFactory<BasePairBitType>, long[]) - Method in class net.imglib2.type.label.BasePairBitType
 
createSuitableNativeImg(NativeImgFactory<BasePairCharType>, long[]) - Method in class net.imglib2.type.label.BasePairCharType
 
createSuitableNativeImg(NativeImgFactory<BitType>, long[]) - Method in class net.imglib2.type.logic.BitType
 
createSuitableNativeImg(NativeImgFactory<ARGBType>, long[]) - Method in class net.imglib2.type.numeric.ARGBType
 
createSuitableNativeImg(NativeImgFactory<ComplexDoubleType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
createSuitableNativeImg(NativeImgFactory<ComplexFloatType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
createSuitableNativeImg(NativeImgFactory<ByteType>, long[]) - Method in class net.imglib2.type.numeric.integer.ByteType
 
createSuitableNativeImg(NativeImgFactory<IntType>, long[]) - Method in class net.imglib2.type.numeric.integer.IntType
 
createSuitableNativeImg(NativeImgFactory<LongType>, long[]) - Method in class net.imglib2.type.numeric.integer.LongType
 
createSuitableNativeImg(NativeImgFactory<ShortType>, long[]) - Method in class net.imglib2.type.numeric.integer.ShortType
 
createSuitableNativeImg(NativeImgFactory<Unsigned128BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
createSuitableNativeImg(NativeImgFactory<Unsigned12BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
createSuitableNativeImg(NativeImgFactory<Unsigned2BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
createSuitableNativeImg(NativeImgFactory<Unsigned4BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
createSuitableNativeImg(NativeImgFactory<UnsignedByteType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
createSuitableNativeImg(NativeImgFactory<UnsignedIntType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
createSuitableNativeImg(NativeImgFactory<UnsignedLongType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
createSuitableNativeImg(NativeImgFactory<UnsignedShortType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
createSuitableNativeImg(NativeImgFactory<UnsignedVariableBitLengthType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
createSuitableNativeImg(NativeImgFactory<NativeARGBDoubleType>, long[]) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
createSuitableNativeImg(NativeImgFactory<DoubleType>, long[]) - Method in class net.imglib2.type.numeric.real.DoubleType
 
createSuitableNativeImg(NativeImgFactory<FloatType>, long[]) - Method in class net.imglib2.type.numeric.real.FloatType
 
createSuitableNativeImg(NativeImgFactory<T>, long[]) - Method in interface net.imglib2.type.NativeType
The NativeType creates the NativeImg used for storing image data; based on the given storage strategy and its size.
createVariable() - Method in class net.imglib2.type.label.BasePairBitType
 
createVariable() - Method in class net.imglib2.type.label.BasePairCharType
 
createVariable() - Method in class net.imglib2.type.logic.BitType
 
createVariable() - Method in class net.imglib2.type.logic.BoolType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ByteType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.IntType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.LongType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ShortType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
createVariable() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.real.DoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.real.FloatType
 
createVariable() - Method in interface net.imglib2.type.Type
Creates a new Type variable which can only store one value.
createVariable() - Method in class net.imglib2.type.volatiles.VolatileNumericType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileRealType
 
createVariable() - Method in class net.imglib2.view.composite.NumericComposite
Generates a 1D ArrayImg<T>
createVariable() - Method in class net.imglib2.view.composite.RealComposite
Generates a 1D ArrayImg<T>
cross(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute cross product, set c = a ^ b.
currentCellMax - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
currentCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentCellMin - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
currentCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentCellSteps - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
 
currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
 
currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
cursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
cursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
cursor() - Method in class net.imglib2.histogram.Histogram1d
 
cursor() - Method in class net.imglib2.histogram.HistogramNd
 
cursor() - Method in class net.imglib2.img.array.ArrayImg
 
cursor() - Method in class net.imglib2.img.cell.AbstractCellImg
 
cursor() - Method in class net.imglib2.img.ImgView
 
cursor() - Method in class net.imglib2.img.list.AbstractListImg
 
cursor() - Method in class net.imglib2.img.list.AbstractLongListImg
 
cursor() - Method in class net.imglib2.img.planar.PlanarImg
 
cursor() - Method in class net.imglib2.img.sparse.NtreeImg
 
cursor() - Method in interface net.imglib2.IterableInterval
 
cursor() - Method in interface net.imglib2.IterableRealInterval
Returns a RealCursor that iterates with optimal speed without calculating the location at each iteration step.
cursor() - Method in class net.imglib2.KDTree
 
cursor() - Method in class net.imglib2.PointSampleList
 
cursor() - Method in class net.imglib2.RealPointSampleList
 
cursor() - Method in class net.imglib2.view.IntervalView
 
cursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
cursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Create a Cursor to iterate over the given Interval.
cursor(Interval) - Method in class net.imglib2.img.ImgView
 
cursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Create a Cursor to iterate over the given Interval.
cursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Create a Cursor to iterate over the given Interval.
Cursor<T> - Interface in net.imglib2
A Cursor iterates over a set of Localizable elements, for example the image values at the (integer) pixel positions of an image.
cursorOnCells - Variable in class net.imglib2.img.cell.CellCursor
 
cursorOnCells - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 

D

d - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
d - Variable in class net.imglib2.view.composite.AbstractComposite
 
data - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.IntArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.ShortArray
 
dataAccess - Variable in class net.imglib2.type.AbstractBitType
 
dataAccess - Variable in class net.imglib2.type.label.BasePairCharType
 
dataAccess - Variable in class net.imglib2.type.logic.BitType
 
dataAccess - Variable in class net.imglib2.type.numeric.ARGBType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericByteType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericIntType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericLongType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericShortType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
dataAccess - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.DoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.FloatType
 
dec() - Method in class net.imglib2.type.logic.BitType
 
dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
dec() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
dec() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
dec() - Method in class net.imglib2.type.numeric.real.FloatType
 
dec() - Method in interface net.imglib2.type.numeric.RealType
 
dec() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
decIndex() - Method in class net.imglib2.type.AbstractBitType
 
decIndex() - Method in class net.imglib2.type.AbstractNativeType
 
decIndex() - Method in class net.imglib2.type.logic.BitType
 
decIndex() - Method in interface net.imglib2.type.NativeType
Decrement the index into the current data array.
decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
decIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
decIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
 
decIndex() - Method in class net.imglib2.type.numeric.real.FloatType
 
decIndex(int) - Method in class net.imglib2.type.AbstractBitType
 
decIndex(int) - Method in class net.imglib2.type.AbstractNativeType
 
decIndex(int) - Method in class net.imglib2.type.logic.BitType
 
decIndex(int) - Method in interface net.imglib2.type.NativeType
Decrease the index into the current data array by decrement steps.
decIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
decIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
decIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
decIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
 
decIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
 
decrement(long) - Method in class net.imglib2.histogram.Histogram1d
Directly decrement a bin by position.
decrement(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Decrements the frequency count of a specified bin.
decrement(long[]) - Method in class net.imglib2.histogram.HistogramNd
Directly decrement a bin by position.
decrement(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Directly decrement a bin by value,
decrement(T) - Method in class net.imglib2.histogram.Histogram1d
Directly decrement a bin by value,
DEFAULT - Enum constant in enum net.imglib2.view.StackView.StackAccessMode
The default behavior is the following.
DefaultRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.DefaultRA
 
DefaultRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.DefaultRA
 
det3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Calculates the determinant of a 3x3 matrix given as a double[] (row major).
det3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
Calculate the determinant of a 3x3 matrix.
dfd() - Method in class net.imglib2.histogram.Histogram1d
Get the discrete frequency distribution associated with this histogram.
dfd() - Method in class net.imglib2.histogram.HistogramNd
Get the discrete frequency distribution associated with this histogram.
dim - Variable in class net.imglib2.img.list.AbstractListImg
 
DimComparator(int) - Constructor for class net.imglib2.KDTree.DimComparator
 
dimension - Variable in class net.imglib2.img.AbstractImg
 
dimension - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Dimensions of the wrapped RandomAccessible.
dimension - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
dimension - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
Dimensions of the wrapped RandomAccessible.
dimension(int) - Method in class net.imglib2.AbstractInterval
 
dimension(int) - Method in class net.imglib2.AbstractWrappedInterval
 
dimension(int) - Method in interface net.imglib2.Dimensions
Get the number of pixels in a given dimension d.
dimension(int) - Method in class net.imglib2.FinalDimensions
 
dimension(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
dimension(int) - Method in class net.imglib2.histogram.Histogram1d
Return the size of the given dimension of the frequency distribution of this histogram.
dimension(int) - Method in class net.imglib2.histogram.HistogramNd
Return the size of the given dimension of the frequency distribution of this histogram.
dimension(int) - Method in class net.imglib2.img.AbstractImg
 
dimension(int) - Method in class net.imglib2.img.cell.Cell
Get the number of pixels in a given dimension d.
dimension(int) - Method in class net.imglib2.iterator.IntervalIterator
 
dimension(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
dimension(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
dimensions - Variable in class net.imglib2.img.cell.Cell
 
dimensions - Variable in class net.imglib2.img.cell.CellRandomAccess
 
dimensions - Variable in class net.imglib2.img.planar.PlanarImg
 
dimensions - Variable in class net.imglib2.iterator.IntervalIterator
 
dimensions - Variable in class net.imglib2.view.SubsampleIntervalView
 
dimensions(int[]) - Method in class net.imglib2.img.cell.Cell
Write the number of pixels in each dimension into long[].
dimensions(long[]) - Method in class net.imglib2.AbstractInterval
 
dimensions(long[]) - Method in class net.imglib2.AbstractWrappedInterval
 
dimensions(long[]) - Method in interface net.imglib2.Dimensions
Write the number of pixels in each dimension into long[].
dimensions(long[]) - Method in class net.imglib2.FinalDimensions
 
dimensions(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
dimensions(long[]) - Method in class net.imglib2.histogram.Histogram1d
Fill the provided long[] with the sizes of all dimensions of the frequency distribution of this histogram.
dimensions(long[]) - Method in class net.imglib2.histogram.HistogramNd
Fill the provided long[] with the sizes of all dimensions of the frequency distribution of this histogram.
dimensions(long[]) - Method in class net.imglib2.img.AbstractImg
 
dimensions(long[]) - Method in class net.imglib2.iterator.IntervalIterator
 
dimensions(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
dimensions(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
Dimensions - Interface in net.imglib2
Defines an extent in n-dimensional discrete space.
dimensionsAsIntArray(Dimensions) - Static method in class net.imglib2.util.Intervals
Create a int[] with the dimensions of an Interval.
dimensionsAsLongArray(Dimensions) - Static method in class net.imglib2.util.Intervals
Create a long[] with the dimensions of a Dimensions.
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
dimX - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
dimY - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
Dirty - Interface in net.imglib2
Interface for objects that can be flagged dirty (useful for access objects that track if their content was modified)
DirtyByteArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
DirtyByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
DirtyCharArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
DirtyCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
DirtyDoubleArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
DirtyDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
DirtyFloatArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
DirtyFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
DirtyIntArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
DirtyIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
DirtyLongArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
DirtyLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
DirtyShortArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
DirtyShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
DirtyVolatileByteArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
DirtyVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
DirtyVolatileCharArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
DirtyVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
DirtyVolatileDoubleArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
DirtyVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
DirtyVolatileFloatArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
DirtyVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
DirtyVolatileIntArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
DirtyVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
DirtyVolatileLongArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
DirtyVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
DirtyVolatileShortArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
DirtyVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
discrete - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
 
DiscreteFrequencyDistribution - Class in net.imglib2.histogram
This class represents an n-dimensional set of counters.
DiscreteFrequencyDistribution(long[]) - Constructor for class net.imglib2.histogram.DiscreteFrequencyDistribution
Construct an n-dimensional counter with the given number of bins
DiscreteFrequencyDistribution(Img<LongType>) - Constructor for class net.imglib2.histogram.DiscreteFrequencyDistribution
Construct an n-dimensional counter using a provided Img<LongType> to store counts.
distance(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the length of (a - b).
distance(long[], long[]) - Static method in class net.imglib2.util.Util
 
distance(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.util.Util
 
distributionCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of all values in the distribution: lower tail + middle + upper tail.
distributionCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the distribution: lower tail + middle + upper tail.
distributionCount(int, long) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the specified dimension of the distribution: lower tail + middle + upper tail.
div(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
div(BitType) - Method in class net.imglib2.type.logic.BitType
 
div(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
div(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
div(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
div(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
div(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
div(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
div(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
div(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
div(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
div(Fraction) - Method in class net.imglib2.util.Fraction
 
div(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
div(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
div(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
div(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
div(T) - Method in interface net.imglib2.type.operators.Div
 
div(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
div(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
Div<T> - Interface in net.imglib2.type.operators
 
divide(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
Unsigned division of d1 by d2.
dot(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute dot product a * b.
DOUBLE - Enum constant in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
 
DoubleAccess - Interface in net.imglib2.img.basictypeaccess
TODO
DoubleArray - Class in net.imglib2.img.basictypeaccess.array
TODO
DoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DoubleArray
 
DoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DoubleArray
 
DoubleAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<DoubleType, DoubleArray> .
DoubleAWTScreenImage(ArrayImg<DoubleType, DoubleArray>) - Constructor for class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
DoubleAWTScreenImage(DoubleType, DoubleArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
DoubleNtree - Class in net.imglib2.img.sparse
DoubleAccess based on a Ntree<Double>.
DoubleNtree(long[], long[], Double) - Constructor for class net.imglib2.img.sparse.DoubleNtree
 
doubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleArray> reusing a passed double[] array.
doubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
doubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
doubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleAccess> using a DoubleAccess passed as argument.
DoubleType - Class in net.imglib2.type.numeric.real
TODO
DoubleType() - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleType(double) - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
dropSingletonDimensions(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Removes all unit dimensions (dimensions with size one) from the RandomAccessibleInterval
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.label.BasePairBitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.label.BasePairCharType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.logic.BitType
 
duplicateTypeOnSameNativeImg() - Method in interface net.imglib2.type.NativeType
Creates a new NativeType which stores in the same physical array.
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.ARGBType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ByteType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.IntType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.LongType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ShortType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.DoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.FloatType
 

E

edgeValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
Returns array of left edge values for each bin.
element - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
elements - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
emptyScreenImage(T, long[]) - Static method in class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
Get an appropriate AWTScreenImage given a type and the dimensionality of the incoming image.
entitiesPerPixel - Variable in class net.imglib2.img.AbstractNativeImg
 
equalDimensions(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Tests weather two intervals have equal dimensions (same size)
equalIterationOrder(IterableInterval<?>...) - Static method in class net.imglib2.util.Util
Checks whether n IterableInterval have the same iteration order.
equals(Object) - Method in class net.imglib2.FlatIterationOrder
Two Intervals are considered to have same iteration order if two Cursors return the same position in each iteration step, excluding dimensions of size 1.
equals(Object) - Method in class net.imglib2.img.cell.CellGrid
 
equals(Object) - Method in class net.imglib2.img.cell.CellIterationOrder
To be equal an object has to be a CellIterationOrder on a CellImg of the same dimensions and cell-dimensions.
equals(Object) - Method in class net.imglib2.Point
 
equals(Object) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
equals(Object) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
equals(Object) - Method in class net.imglib2.util.ValuePair
 
equals(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Tests weather two intervals are equal in their min / max
EuclideanSpace - Interface in net.imglib2
{Rn}: an N-dimensional Euclidean space.
exclusiveValueToBin(int, double, double, double) - Static method in class net.imglib2.util.Binning
Convert value to bin number.
expand(double) - Method in class net.imglib2.util.RealSum
 
expand(F, OutOfBoundsFactory<T, ? super F>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expand(Interval, long) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in all dimensions.
expand(Interval, long...) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in all dimensions.
expand(Interval, long, int) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in one dimensions.
expand(Interval, Dimensions) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in all dimensions.
expandBorder(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandMirrorDouble(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandMirrorSingle(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandPeriodic(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandRandom(RandomAccessibleInterval<T>, double, double, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, T, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandZero(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
extend(F, OutOfBoundsFactory<T, ? super F>) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with an out-of-bounds strategy.
extendBorder(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with an out-of-bounds strategy to repeat border pixels.
ExtendedRandomAccessibleInterval<T,F> - Class in net.imglib2.view
ExtendedRandomAccessibleInterval(F, OutOfBoundsFactory<T, ? super F>) - Constructor for class net.imglib2.view.ExtendedRandomAccessibleInterval
 
ExtendedRealRandomAccessibleRealInterval<T,F> - Class in net.imglib2.view
ExtendedRealRandomAccessibleRealInterval(F, RealOutOfBoundsFactory<T, ? super F>) - Constructor for class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
extendMirrorDouble(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendMirrorSingle(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendPeriodic(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a periodic out-of-bounds strategy.
extendRandom(F, double, double) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a random-value out-of-bounds strategy.
extendValue(F, T) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendZero(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy where the constant value is the zero-element of the data type.

F

f(double[], long[]) - Method in class net.imglib2.position.transform.FloorOffset
 
f(double, long) - Static method in class net.imglib2.position.transform.FloorOffset
 
f(float[], long[]) - Method in class net.imglib2.position.transform.FloorOffset
 
f(float, long) - Static method in class net.imglib2.position.transform.FloorOffset
 
f(RealLocalizable, long[]) - Method in class net.imglib2.position.transform.FloorOffset
 
factory - Variable in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
factory - Variable in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
factory() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
factory() - Method in class net.imglib2.histogram.Histogram1d
 
factory() - Method in class net.imglib2.histogram.HistogramNd
 
factory() - Method in class net.imglib2.img.array.ArrayImg
 
factory() - Method in class net.imglib2.img.cell.CellImg
 
factory() - Method in class net.imglib2.img.cell.LazyCellImg
 
factory() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
factory() - Method in interface net.imglib2.img.Img
Get a ImgFactory that creates Imgs of the same kind as this one.
factory() - Method in class net.imglib2.img.ImgView
 
factory() - Method in class net.imglib2.img.list.AbstractListImg
 
factory() - Method in class net.imglib2.img.planar.PlanarImg
 
factory() - Method in class net.imglib2.img.sparse.NtreeImg
 
Factory() - Constructor for class net.imglib2.view.composite.GenericComposite.Factory
 
Factory(int) - Constructor for class net.imglib2.view.composite.NumericComposite.Factory
 
Factory(int) - Constructor for class net.imglib2.view.composite.RealComposite.Factory
 
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
FinalDimensions - Class in net.imglib2
An implementation of dimensionality that can wrap a long[] array.
FinalDimensions(int...) - Constructor for class net.imglib2.FinalDimensions
Create a FinalDimensions with a defined size
FinalDimensions(long...) - Constructor for class net.imglib2.FinalDimensions
Create a FinalDimensions with a defined size
FinalDimensions(long[], boolean) - Constructor for class net.imglib2.FinalDimensions
Protected constructor that can re-use the passed position array.
FinalInterval - Class in net.imglib2
Implementation of the Interval interface.
FinalInterval(long...) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [0, dimensions-1]
FinalInterval(long[], long[]) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [min, max] (both including)
FinalInterval(Dimensions) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [0, dimensions-1]
FinalInterval(Interval) - Constructor for class net.imglib2.FinalInterval
Creates an Interval from another Interval
FinalRealInterval - Class in net.imglib2
Implementation of the RealInterval interface.
FinalRealInterval(double[], double[]) - Constructor for class net.imglib2.FinalRealInterval
Creates a new AbstractRealInterval from min and max coordinates
FinalRealInterval(RealInterval) - Constructor for class net.imglib2.FinalRealInterval
Creates a new AbstractRealInterval using an existing RealInterval
firstDataValue() - Method in class net.imglib2.histogram.Histogram1d
Returns the first data value of the input iteration.
firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
firstElement() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
firstElement() - Method in class net.imglib2.histogram.Histogram1d
 
firstElement() - Method in class net.imglib2.histogram.HistogramNd
 
firstElement() - Method in class net.imglib2.img.AbstractImg
 
firstElement() - Method in interface net.imglib2.IterableRealInterval
Get the first element of this IterableRealInterval.
firstElement() - Method in class net.imglib2.KDTree
 
firstElement() - Method in class net.imglib2.PointSampleList
 
firstElement() - Method in class net.imglib2.RealPointSampleList
 
firstElement() - Method in class net.imglib2.view.IntervalView
 
firstElement() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
flags - Variable in class net.imglib2.util.RealSum
 
flatIterable(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
FlatIterationOrder - Class in net.imglib2
A flat iteration order on an IterableInterval.
FlatIterationOrder(Interval) - Constructor for class net.imglib2.FlatIterationOrder
 
FloatAccess - Interface in net.imglib2.img.basictypeaccess
TODO
FloatArray - Class in net.imglib2.img.basictypeaccess.array
TODO
FloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.FloatArray
 
FloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.FloatArray
 
FloatAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<FloatType, FloatArray>.
FloatAWTScreenImage(ArrayImg<FloatType, FloatArray>) - Constructor for class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
FloatAWTScreenImage(FloatType, FloatArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
FloatNtree - Class in net.imglib2.img.sparse
FloatAccess based on a Ntree<Float>.
FloatNtree(long[], long[], Float) - Constructor for class net.imglib2.img.sparse.FloatNtree
 
floats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatArray> reusing a passed float[] array.
floats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
floats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
floats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatAccess> using a FloatAccess passed as argument.
FloatType - Class in net.imglib2.type.numeric.real
TODO
FloatType() - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatType(float) - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.real.FloatType
 
floor(double) - Static method in class net.imglib2.position.transform.Floor
 
floor(double[], long[]) - Static method in class net.imglib2.position.transform.Floor
 
floor(float) - Static method in class net.imglib2.position.transform.Floor
 
floor(float[], long[]) - Static method in class net.imglib2.position.transform.Floor
 
floor(RealLocalizable, long[]) - Static method in class net.imglib2.position.transform.Floor
 
Floor<LocalizablePositionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to its floor discrete coordinates.
Floor(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Floor
 
Floor(RealLocalizable, LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Floor
 
FloorInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
RealRandomAccess to a RandomAccess by nearest floor interpolation (i.e., the value is sampled at floor(x)).
FloorInterpolator(FloorInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
FloorInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
FloorInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
 
FloorInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
 
FloorOffset<LocalizablePositionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to its floor discrete coordinates plus a discrete offset vector.
FloorOffset(LocalizablePositionable, long[]) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloorOffset(LocalizablePositionable, Localizable) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloorOffset(RealLocalizable, LocalizablePositionable, long[]) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloorOffset(RealLocalizable, LocalizablePositionable, Localizable) - Constructor for class net.imglib2.position.transform.FloorOffset
 
Fraction - Class in net.imglib2.util
Implements the concept of fractions
Fraction() - Constructor for class net.imglib2.util.Fraction
Instantiate a Fraction with a value of 1
Fraction(long, long) - Constructor for class net.imglib2.util.Fraction
Creates a new fraction with the respective values
frequency(long) - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of the values within a bin.
frequency(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the frequency count associated with a given bin.
frequency(long[]) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of the values within a bin.
frequency(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values within a bin using a set of representative values.
frequency(T) - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values within a bin using a representative value.
FullSourceMapMixedRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Mixed transformToSource.
FullSourceMapMixedRandomAccess(FullSourceMapMixedRandomAccess<T>) - Constructor for class net.imglib2.view.FullSourceMapMixedRandomAccess
 
FullSourceMapSlicingRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Slicing transformToSource.
FullSourceMapSlicingRandomAccess(FullSourceMapSlicingRandomAccess<T>) - Constructor for class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
fullViewIterableInterval - Variable in class net.imglib2.view.IntervalView
TODO Javadoc
fullViewRandomAccessible - Variable in class net.imglib2.view.IntervalView
TODO Javadoc
fullViewRandomAccessible - Variable in class net.imglib2.view.MixedTransformView
 
fullViewRandomAccessible - Variable in class net.imglib2.view.TransformView
 
fwd() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
fwd() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
fwd() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
fwd() - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
fwd() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
fwd() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Move forward.
fwd() - Method in class net.imglib2.img.cell.CellCursor
 
fwd() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
fwd() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
fwd() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
fwd() - Method in class net.imglib2.img.list.ListCursor
 
fwd() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
fwd() - Method in class net.imglib2.img.planar.PlanarCursor
 
fwd() - Method in class net.imglib2.img.planar.PlanarCursor2D
 
fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
fwd() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Move forward.
fwd() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Move forward.
fwd() - Method in interface net.imglib2.Iterator
Move forward.
fwd() - Method in class net.imglib2.iterator.IntervalIterator
 
fwd() - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
fwd() - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
fwd() - Method in class net.imglib2.KDTree.KDTreeCursor
 
fwd() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
fwd() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
fwd() - Method in class net.imglib2.view.iteration.SlicingCursor
Move forward.
fwd() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
fwd(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
fwd(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
fwd(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
fwd(int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
fwd(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
fwd(int) - Method in class net.imglib2.img.list.ListRandomAccess
 
fwd(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
fwd(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
fwd(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
fwd(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
fwd(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
fwd(int) - Method in class net.imglib2.Point
 
fwd(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
fwd(int) - Method in interface net.imglib2.Positionable
Move by 1 in one dimension.
fwd(int) - Method in class net.imglib2.RealPoint
 
fwd(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
fwd(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
fwd(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
fwd(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
fwd(int) - Method in class net.imglib2.view.MixedRandomAccess
 
fwd(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
fwd(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
fwd(int) - Method in class net.imglib2.view.SlicingRandomAccess
 
fwd(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
fwd(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
fwd(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
fwd(int) - Method in class net.imglib2.view.TransformRandomAccess
 
fwd(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
fwdDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves one step forward in dimension 0

G

g - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
G - Enum constant in enum net.imglib2.converter.ChannelARGBConverter.Channel
 
G - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
gap - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
genericArray(int) - Static method in class net.imglib2.util.Util
 
GenericByteType<T> - Class in net.imglib2.type.numeric.integer
TODO
GenericByteType() - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericComposite<T> - Class in net.imglib2.view.composite
A generic vector of scalars T.
GenericComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.GenericComposite
 
GenericComposite.Factory<T> - Class in net.imglib2.view.composite
 
GenericIntType<T> - Class in net.imglib2.type.numeric.integer
TODO
GenericIntType() - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericIntType(int) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericIntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericIntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericLongType<T> - Class in net.imglib2.type.numeric.integer
Abstract superclass for Long types.
GenericLongType() - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericLongType(long) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericLongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericLongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericShortType<T> - Class in net.imglib2.type.numeric.integer
Abstract base class for native IntegerTypes that encode their value into a 16bit short.
GenericShortType() - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GenericShortType(short) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GenericShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GenericShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
get() - Method in class net.imglib2.converter.read.ConvertedCursor
 
get() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
 
get() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
get() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
 
get() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
get() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
get() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
get() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
get() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
get() - Method in class net.imglib2.img.cell.CellCursor
 
get() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
get() - Method in class net.imglib2.img.cell.CellRandomAccess
 
get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
get() - Method in class net.imglib2.img.list.ListCursor
 
get() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
get() - Method in class net.imglib2.img.list.ListRandomAccess
 
get() - Method in class net.imglib2.img.planar.PlanarCursor
 
get() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
get() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
get() - Method in class net.imglib2.img.sparse.NtreeCursor
 
get() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
get() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
get() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Get the interpolated value at the current position.
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
Get the interpolated value at the current position.
get() - Method in class net.imglib2.KDTree.KDTreeCursor
 
get() - Method in class net.imglib2.KDTree.SamplerNode
 
get() - Method in class net.imglib2.KDTree.ValueNode
 
get() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
get() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
get() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
get() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
get() - Method in interface net.imglib2.Sampler
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in interface net.imglib2.type.BasePairType
 
get() - Method in interface net.imglib2.type.BooleanType
 
get() - Method in class net.imglib2.type.label.BasePairBitType
 
get() - Method in class net.imglib2.type.label.BasePairCharType
 
get() - Method in class net.imglib2.type.logic.BitType
 
get() - Method in class net.imglib2.type.logic.BoolType
 
get() - Method in class net.imglib2.type.numeric.ARGBType
 
get() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
get() - Method in class net.imglib2.type.numeric.integer.ByteType
 
get() - Method in class net.imglib2.type.numeric.integer.IntType
 
get() - Method in class net.imglib2.type.numeric.integer.LongType
 
get() - Method in class net.imglib2.type.numeric.integer.ShortType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
This method returns the value of the UnsignedLongType as a signed long.
get() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
get() - Method in class net.imglib2.type.numeric.real.DoubleType
 
get() - Method in class net.imglib2.type.numeric.real.FloatType
 
get() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
get() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
get() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
get() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
get() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
get() - Method in class net.imglib2.view.iteration.SlicingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.view.MixedRandomAccess
 
get() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
get() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
get() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
get() - Method in class net.imglib2.view.SlicingRandomAccess
 
get() - Method in class net.imglib2.view.StackView.DefaultRA
 
get() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
get() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
get() - Method in class net.imglib2.view.TransformRandomAccess
 
get() - Method in class net.imglib2.view.TranslationRandomAccess
 
get() - Method in class net.imglib2.Volatile
 
get(int) - Method in class net.imglib2.img.list.AbstractListImg
 
get(int) - Method in class net.imglib2.img.list.ListImg
 
get(int, int) - Method in class net.imglib2.display.AbstractArrayColorTable
Gets an individual value from the color table.
get(int, int) - Method in interface net.imglib2.display.ColorTable
Gets an individual value from the color table.
get(int, int) - Method in class net.imglib2.display.ColorTable16
 
get(int, int) - Method in class net.imglib2.display.ColorTable8
 
get(long) - Method in interface net.imglib2.img.cell.LazyCellImg.Get
 
get(long) - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
get(long) - Method in class net.imglib2.img.list.AbstractLongListImg
 
get(long) - Method in class net.imglib2.view.composite.AbstractComposite
 
get(long) - Method in interface net.imglib2.view.composite.Composite
Get the ith scalar value of the Composite.
getA() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getA() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getA() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getA() - Method in interface net.imglib2.util.Pair
 
getA() - Method in class net.imglib2.util.ValuePair
 
getA() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getAlpha() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
getArrayFromValue(double, int) - Static method in class net.imglib2.util.Util
 
getArrayFromValue(float, int) - Static method in class net.imglib2.util.Util
 
getArrayFromValue(int, int) - Static method in class net.imglib2.util.Util
 
getArrayFromValue(long, int) - Static method in class net.imglib2.util.Util
 
getArrayOrCellImgFactory(Dimensions, int, T) - Static method in class net.imglib2.util.Util
Create an ArrayImgFactory if an image of the requested targetSize could be held in an ArrayImg.
getArrayOrCellImgFactory(Dimensions, T) - Static method in class net.imglib2.util.Util
Create an ArrayImgFactory if an image of the requested targetSize could be held in an ArrayImg.
getB() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getB() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getB() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getB() - Method in interface net.imglib2.util.Pair
 
getB() - Method in class net.imglib2.util.ValuePair
 
getB() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getBigInteger() - Method in class net.imglib2.type.logic.BitType
 
getBigInteger() - Method in class net.imglib2.type.logic.BoolType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.IntType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.LongType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
This method returns the unsigned representation of this UnsignedLongType as a BigInteger.
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getBigInteger() - Method in interface net.imglib2.type.numeric.IntegerType
 
getBinCount() - Method in interface net.imglib2.histogram.BinMapper1d
Returns the number of bins within this bin mapping distribution.
getBinCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the number of bins contained in the histogram.
getBinCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the number of bins contained in the histogram.
getBinCount() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getBinCount() - Method in class net.imglib2.histogram.Real1dBinMapper
 
getBits() - Method in interface net.imglib2.display.ArrayColorTable
Gets the number of bits in each color component value.
getBits() - Method in class net.imglib2.display.ColorTable16
 
getBits() - Method in class net.imglib2.display.ColorTable8
 
getBits() - Method in class net.imglib2.type.AbstractBit64Type
Writes the current "subLong" location of the LongAccess into the lower nBits bits of the long value Note that "long value" does not refer to math, it is just a way to help to return arbitrary values.
getBitsPerPixel() - Method in class net.imglib2.type.logic.BitType
 
getBitsPerPixel() - Method in class net.imglib2.type.logic.BoolType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.FloatType
 
getBitsPerPixel() - Method in interface net.imglib2.type.numeric.RealType
 
getBitsPerPixel() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getBitsPerPixel(T) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
getByte() - Method in class net.imglib2.type.numeric.integer.GenericByteType
Returns the primitive byte value that is used to store this type.
getCell() - Method in interface net.imglib2.img.cell.AbstractCellImg.CellImgSampler
 
getCell() - Method in class net.imglib2.img.cell.CellCursor
 
getCell() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
getCell() - Method in class net.imglib2.img.cell.CellRandomAccess
 
getCellDimensions(int[], int, Fraction) - Static method in class net.imglib2.img.cell.CellImgFactory
Computes cell size array by truncating or expanding defaultCellDimensions to length n.
getCellDimensions(long[], long[], int[]) - Method in class net.imglib2.img.cell.CellGrid
From the position of a cell in the grid, compute the image position of the first pixel of the cell (the offset of the cell in image coordinates) and the dimensions of the cell.
getCellDimensions(long, long[], int[]) - Method in class net.imglib2.img.cell.CellGrid
From the index of a cell in the grid, compute the image position of the first pixel of the cell (the offset of the cell in image coordinates) and the dimensions of the cell.
getCellGrid() - Method in class net.imglib2.img.cell.AbstractCellImg
Get the CellGrid which describes the layout of the AbstractCellImg.
getCellGridPositionFlat(long, long[]) - Method in class net.imglib2.img.cell.CellGrid
From the flattened index of a cell in the grid, compute the position of a cell in the grid.
getCellPosition(long[], long[]) - Method in class net.imglib2.img.cell.CellGrid
Get the grid position of the cell containing the element at position.
getCellPosition(long[], Positionable) - Method in class net.imglib2.img.cell.CellGrid
Get the grid position of the cell containing the element at position.
getCells() - Method in class net.imglib2.img.cell.AbstractCellImg
Get the underlying image of cells which gives access to the individual Cells through Cursors and RandomAccesses.
getCenterValue(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
Gets the data value associated with the center of a bin.
getCenterValue(long, T) - Method in class net.imglib2.histogram.Histogram1d
Gets the value associated with the center of a bin.
getCenterValue(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getCenterValue(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
getCenterValues(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
Gets the values associated with the center of a bin.
getChar() - Method in class net.imglib2.type.label.BasePairCharType
 
getChildren() - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
getClipping() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
getCodedSignedByte(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getCodedSignedByteChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getCodedSignedInt(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getCodedSignedIntChecked(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getCodedSignedShort(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getCodedSignedShortChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getCol(int, double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
extract column c of A into vector b.
getCommonFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getCommonRelativeFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getComponentCount() - Method in class net.imglib2.display.AbstractArrayColorTable
 
getComponentCount() - Method in interface net.imglib2.display.ColorTable
Gets the number of color components in the table (typically 3 for RGB or 4 for RGBA).
getComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentInversion(boolean[]) - Method in interface net.imglib2.transform.integer.Mixed
Get an array indicating for each target component, whether the source component it is taken from should be inverted.
getComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentInversion(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentInversion(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the d-th component of inversion vector (see Mixed.getComponentInversion(boolean[])).
getComponentInversion(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getComponentMapping(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the source dimension which is mapped to the d-th target dimension (see Mixed.getComponentMapping(int[])).
getComponentMapping(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getComponentMapping(int[]) - Method in interface net.imglib2.transform.integer.Mixed
Get an array indicating for each target dimensions from which source dimension it is taken.
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentZero(boolean[]) - Method in interface net.imglib2.transform.integer.Mixed
Get a boolean array indicating which target dimensions are _not_ taken from source dimensions.
getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getComponentZero(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentZero(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the d-th component of zeroing vector (see Mixed.getComponentZero(boolean[])).
getComponentZero(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentZero(int) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getConcatenableClass() - Method in interface net.imglib2.concatenate.Concatenable
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.MixedTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.SlicingTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getConverter() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
getConverter() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
getConverter() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
getConverter() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
getConverter() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
getCurrentSliceIndex() - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarCursor
 
getCurrentSliceIndex() - Method in interface net.imglib2.img.planar.PlanarImg.PlanarContainerSampler
 
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
getCurrentStorageArray() - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.BooleanNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.ByteNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.CharNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.DoubleNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.FloatNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.IntNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.LongNtree
 
getCurrentStorageNtree() - Method in interface net.imglib2.img.sparse.NtreeAccess
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.ShortNtree
 
getData() - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getData() - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
getData() - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getData() - Method in class net.imglib2.display.screenimage.awt.ARGBScreenImage
The underlying array holding the data.
getData() - Method in class net.imglib2.img.cell.Cell
Get the basic type array that stores this cells pixels.
getData(int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getData(int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
getData(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getDenominator() - Method in class net.imglib2.util.Fraction
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
getDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getDistance() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the Euclidean distance between the reference location as used for the last search and the nearest neighbor, ordered by square Euclidean distance.
getDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getDistance(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the Euclidean distance between the reference location as used for the last search and the ith nearest neighbor, ordered by square Euclidean distance.
getDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getDistance(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the Euclidean distance between the reference location as used for the last search and the ith neighbor.
getDistance(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getDoublePosition(int) - Method in class net.imglib2.AbstractCursor
 
getDoublePosition(int) - Method in class net.imglib2.AbstractCursorInt
 
getDoublePosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getDoublePosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getDoublePosition(int) - Method in class net.imglib2.AbstractRealLocalizable
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getDoublePosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getDoublePosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getDoublePosition(int) - Method in class net.imglib2.KDTree.KDTreeCursor
 
getDoublePosition(int) - Method in class net.imglib2.KDTreeNode
 
getDoublePosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getDoublePosition(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getDoublePosition(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
getDoublePosition(int) - Method in interface net.imglib2.RealLocalizable
Return the current position in a given dimension.
getDoublePosition(int) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
getDoublePosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getDoublePosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getDoublePosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getEfficientIterableInterval(Interval, RandomAccessible<S>) - Static method in class net.imglib2.view.iteration.IterableTransformBuilder
Create an IterableInterval that iterates an Interval of a RandomAccessible.
getEfficientRandomAccessible(Interval, RandomAccessible<S>) - Static method in class net.imglib2.view.TransformBuilder
Get a RandomAccessible which provides RandomAccess to the specified interval of randomAccessible.
getElem(int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getElem(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElem(int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getElem(int, int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
getElem(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemDouble(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemDouble(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemFloat(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemFloat(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getEntitiesPerPixel() - Method in class net.imglib2.type.AbstractBitType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.label.BasePairCharType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.logic.BitType
 
getEntitiesPerPixel() - Method in interface net.imglib2.type.NativeType
Get the number of entities in the storage array required to store one pixel value.
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.ARGBType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.FloatType
 
getExponent() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getFloatPosition(int) - Method in class net.imglib2.AbstractCursor
 
getFloatPosition(int) - Method in class net.imglib2.AbstractCursorInt
 
getFloatPosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getFloatPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getFloatPosition(int) - Method in class net.imglib2.AbstractRealLocalizable
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getFloatPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getFloatPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getFloatPosition(int) - Method in class net.imglib2.KDTree.KDTreeCursor
 
getFloatPosition(int) - Method in class net.imglib2.KDTreeNode
 
getFloatPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getFloatPosition(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getFloatPosition(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
getFloatPosition(int) - Method in interface net.imglib2.RealLocalizable
Return the current position in a given dimension.
getFloatPosition(int) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
getFloatPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getFloatPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getFloatPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getFullViewIterableInterval() - Method in class net.imglib2.view.IntervalView
 
getG() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getG() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getG() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getGridDimensions() - Method in class net.imglib2.img.cell.CellGrid
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getImaginaryDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getImaginaryDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getImaginaryFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getImaginaryFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getImg() - Method in interface net.imglib2.img.WrappedImg
 
getImgDimensions() - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in each dimension as a new long[].
getIndex() - Method in class net.imglib2.iterator.IntervalIterator
 
getIndex() - Method in class net.imglib2.type.AbstractBitType
 
getIndex() - Method in class net.imglib2.type.AbstractNativeType
 
getIndex() - Method in class net.imglib2.type.logic.BitType
 
getIndex() - Method in interface net.imglib2.type.NativeType
Get the current index into the current data array.
getIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
getIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
getIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
getIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
getIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getIndex() - Method in class net.imglib2.type.numeric.real.FloatType
 
getIndex(int[]) - Method in class net.imglib2.img.planar.PlanarImg
For a given ≥2d location, estimate the pixel index in the stack slice.
getInt() - Method in class net.imglib2.type.numeric.integer.GenericIntType
Returns the primitive int value that is used to store this type.
getInteger() - Method in class net.imglib2.type.logic.BitType
 
getInteger() - Method in class net.imglib2.type.logic.BoolType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.IntType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.LongType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
Return the lowest 32 bits, like BigInteger.intValue().
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getInteger() - Method in interface net.imglib2.type.numeric.IntegerType
 
getIntegerLong() - Method in class net.imglib2.type.logic.BitType
 
getIntegerLong() - Method in class net.imglib2.type.logic.BoolType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.IntType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.LongType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
Return the lowest 64 bits, like BigInteger.intValue().
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getIntegerLong() - Method in interface net.imglib2.type.numeric.IntegerType
 
getInterpolatorFactory() - Method in class net.imglib2.interpolation.Interpolant
 
getInterval() - Method in class net.imglib2.transform.integer.BoundingBox
 
getIntPosition(int) - Method in class net.imglib2.AbstractCursor
 
getIntPosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getIntPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getIntPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getIntPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.img.array.AbstractArrayCursor
 
getIntPosition(int) - Method in class net.imglib2.img.list.ListCursor
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor1D
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor2D
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Return the current position in a given dimension.
getIntPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getIntPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getIntPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getIntPosition(int) - Method in interface net.imglib2.Localizable
Return the current position in a given dimension.
getIntPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getIntPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getIntPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getIntPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getIntPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getIntPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getIntPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getIntPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getInverseLutCopy() - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
getK() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Get the of k nearest neighbor points used in this search
getK() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getK() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getLength() - Method in interface net.imglib2.display.ColorTable
Gets the number of elements for each color component in the table.
getLength() - Method in class net.imglib2.display.ColorTable16
 
getLength() - Method in class net.imglib2.display.ColorTable8
 
getLong() - Method in class net.imglib2.type.numeric.integer.GenericLongType
Returns the primitive long value that is used to store this type.
getLongPosition(int) - Method in class net.imglib2.AbstractCursorInt
 
getLongPosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getLongPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getLongPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getLongPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.img.cell.CellCursor
 
getLongPosition(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
getLongPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getLongPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getLongPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getLongPosition(int) - Method in interface net.imglib2.Localizable
Return the current position in a given dimension.
getLongPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getLongPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getLongPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getLongPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getLongPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getLongPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getLongPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getLongPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getLowerBound(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
Gets the data value associated with the left edge of a bin.
getLowerBound(long, T) - Method in class net.imglib2.histogram.Histogram1d
Gets the value associated with the left edge of a bin.
getLowerBound(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getLowerBound(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
getLowerBounds(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
Gets the values associated with the left edge of a bin.
getLUT() - Method in class net.imglib2.converter.RealLUTConverter
 
getLutCopy() - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
getMatrix() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getMatrix() - Method in interface net.imglib2.transform.integer.Mixed
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.MixedTransform
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.SlicingTransform
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.TranslationTransform
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getMax() - Method in class net.imglib2.display.AbstractLinearRange
 
getMax() - Method in interface net.imglib2.display.LinearRange
 
getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
The true maximum value, unlike Unsigned128BitType.getMaxValue() which cannot represent it in a double.
getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
Returns the true maximum value as a BigInteger, since it cannot be precisely represented as a double.
getMaxValue() - Method in class net.imglib2.type.logic.BitType
 
getMaxValue() - Method in class net.imglib2.type.logic.BoolType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
The maximum value that can be stored is Math.pow(2, nBits) -1.
getMaxValue() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.IntType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.LongType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
The maximum value that can be stored is Math.pow(2, 128) -1, which cannot be represented with precision using a double
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
The maximum value that can be stored is Math.pow( 2, 64 ) - 1, which can't be represented with exact precision using a double
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
The maximum value that can be stored is Math.pow(2, nBits) -1.
getMaxValue() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getMaxValue() - Method in class net.imglib2.type.numeric.real.FloatType
 
getMaxValue() - Method in interface net.imglib2.type.numeric.RealType
 
getMaxValue() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getMin() - Method in class net.imglib2.display.AbstractLinearRange
 
getMin() - Method in interface net.imglib2.display.LinearRange
 
getMinFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getMinIncrement() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.real.FloatType
 
getMinIncrement() - Method in interface net.imglib2.type.numeric.RealType
 
getMinIncrement() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getMinValue() - Method in class net.imglib2.type.logic.BitType
 
getMinValue() - Method in class net.imglib2.type.logic.BoolType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.IntType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.LongType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getMinValue() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getMinValue() - Method in class net.imglib2.type.numeric.real.FloatType
 
getMinValue() - Method in interface net.imglib2.type.numeric.RealType
 
getMinValue() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getNative(int, int) - Method in interface net.imglib2.display.ArrayColorTable
Gets an individual value from the color table.
getNative(int, int) - Method in class net.imglib2.display.ColorTable16
 
getNative(int, int) - Method in class net.imglib2.display.ColorTable8
 
getNumerator() - Method in class net.imglib2.util.Fraction
 
getOutOfBoundsFactory() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
getOutOfBoundsFactory() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPhaseDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPhaseDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPhaseFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPhaseFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPlane(int) - Method in interface net.imglib2.img.basictypeaccess.PlanarAccess
 
getPlane(int) - Method in class net.imglib2.img.planar.PlanarImg
 
getPosition() - Method in class net.imglib2.img.sparse.NtreeCursor
 
getPosition() - Method in interface net.imglib2.img.sparse.NtreeImg.PositionProvider
 
getPosition() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getPosition() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getPosition() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getPosition() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the position of the nearest neighbor, ordered by square Euclidean distance.
getPosition() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getPosition() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getPosition(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the position of the ith nearest neighbor, ordered by square Euclidean distance.
getPosition(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getPosition(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getPosition(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the position of the ith neighbor within radius.
getPosition(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getPowerDouble() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPowerDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPowerDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPowerDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPowerDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPowerDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPowerFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPowerFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPreConcatenableClass() - Method in interface net.imglib2.concatenate.PreConcatenable
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.MixedTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.SlicingTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getR() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getR() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getR() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getRatio() - Method in class net.imglib2.util.Fraction
 
getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getRealDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getRealDouble() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getRealDouble() - Method in class net.imglib2.type.numeric.real.FloatType
 
getRealDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getRealFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getRealFloat() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getRealFloat() - Method in class net.imglib2.type.numeric.real.FloatType
 
getRealFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getReferenceDimension() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
getResampled(int, int, int) - Method in class net.imglib2.display.AbstractArrayColorTable
Gets an individual value from a color table with given number of bins.
getResampled(int, int, int) - Method in interface net.imglib2.display.ColorTable
Gets an individual value from a color table with given number of bins.
getResampled(int, int, int) - Method in class net.imglib2.display.ColorTable16
 
getResampled(int, int, int) - Method in class net.imglib2.display.ColorTable8
 
getRoot() - Method in class net.imglib2.KDTree
Get the root node.
getRootNode() - Method in class net.imglib2.img.sparse.Ntree
Returns the root node of the ntree
getRow(int, double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
extract row r of A into vector b.
getSampler() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSampler() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSampler() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the data of the nearest neighbor.
getSampler() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getSampler() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getSampler(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the data of the ith nearest neighbor, ordered by square Euclidean distance.
getSampler(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSampler(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSampler(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the data of the ith neighbor within radius.
getSampler(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getShear() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
getShear() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
getShear() - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
getShearDimension() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
getShort() - Method in class net.imglib2.type.numeric.integer.GenericShortType
Returns the primitive short value that is used to store this type.
getSource() - Method in class net.imglib2.AbstractWrappedRealInterval
 
getSource() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
getSource() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
getSource() - Method in class net.imglib2.interpolation.Interpolant
 
getSource() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
getSource() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
getSource() - Method in class net.imglib2.view.IntervalView
Gets the underlying source RandomAccessible.
getSource() - Method in class net.imglib2.view.MixedTransformView
 
getSource() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
getSource() - Method in class net.imglib2.view.SubsampleView
 
getSource() - Method in interface net.imglib2.view.TransformedRandomAccessible
Get the source of the TransformedRandomAccessible.
getSource() - Method in class net.imglib2.view.TransformView
 
getSourceSlices() - Method in class net.imglib2.view.StackView
Get the source slices that are stacked in this StackView.
getSplitCoordinate() - Method in class net.imglib2.KDTreeNode
Get the position along KDTreeNode.getSplitDimension() where this node divides the space.
getSplitDimension() - Method in class net.imglib2.KDTreeNode
Get the dimension along which this node divides the space.
getSquareDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSquareDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSquareDistance() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the square Euclidean distance between the reference location as used for the last search and the nearest neighbor, ordered by square Euclidean distance.
getSquareDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getSquareDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getSquareDistance(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the square Euclidean distance between the reference location as used for the last search and the ith nearest neighbor, ordered by square Euclidean distance.
getSquareDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSquareDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSquareDistance(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the square Euclidean distance between the reference location as used for the last search and the ith neighbor.
getSquareDistance(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getStackAccessMode() - Method in class net.imglib2.view.StackView
 
getSteps() - Method in class net.imglib2.view.SubsampleView
 
getSuggestedKernelDiameter(double) - Static method in class net.imglib2.util.Util
 
getSum() - Method in class net.imglib2.util.RealSum
Get the current sum by summing up all intermediate sums.
getTransformToSource() - Method in class net.imglib2.view.MixedTransformView
 
getTransformToSource() - Method in interface net.imglib2.view.TransformedRandomAccessible
Get the transformation from view coordinates into source coordinates.
getTransformToSource() - Method in class net.imglib2.view.TransformView
 
getTranslation(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getTranslation(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the d-th component of translation (see Mixed.getTranslation(long[])).
getTranslation(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.TranslationTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getTranslation(long[]) - Method in interface net.imglib2.transform.integer.Mixed
Get the translation.
getTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getTypeFromInterval(F) - Static method in class net.imglib2.util.Util
Gets an instance of T from the RandomAccessibleInterval by querying the value at the min coordinate
getTypeFromRealInterval(F) - Static method in class net.imglib2.util.Util
Gets an instance of T from the RandomAccessibleInterval by querying the value at the min coordinate
getUnsignedByte(byte) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getUnsignedInt(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getUnsignedShort(short) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getUpperBound(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
Gets the data value associated with the right edge of a bin.
getUpperBound(long, T) - Method in class net.imglib2.histogram.Histogram1d
Gets the value associated with the right edge of the bin.
getUpperBound(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getUpperBound(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
getUpperBounds(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
Gets the values associated with the right edge of a bin.
getValue() - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
getValue() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
getValue() - Method in class net.imglib2.type.numeric.integer.GenericByteType
Deprecated.
getValue() - Method in class net.imglib2.type.numeric.integer.GenericIntType
Deprecated.
getValue() - Method in class net.imglib2.type.numeric.integer.GenericLongType
Deprecated.
getValue() - Method in class net.imglib2.type.numeric.integer.GenericShortType
Deprecated.
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.ByteAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.CharAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.DoubleAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.FloatAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.IntAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.LongAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.ShortAccess
 
getValue(int) - Method in class net.imglib2.img.sparse.BooleanNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.ByteNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.CharNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.DoubleNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.FloatNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.IntNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.LongNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.NtreeIntAccess
 
getValue(int) - Method in class net.imglib2.img.sparse.ShortNtree
 
getValues() - Method in class net.imglib2.display.AbstractArrayColorTable
 
getValues() - Method in interface net.imglib2.display.ArrayColorTable
Gets a copy of the entire color table.
getWeight(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
globalPositionToIndex(long[]) - Method in class net.imglib2.img.cell.Cell
Compute the index in the underlying flat array of this cell which corresponds to the specified global position.
gLog(double, double) - Static method in class net.imglib2.util.Util
 
gLog(float, float) - Static method in class net.imglib2.util.Util
 
gLogInv(double, double) - Static method in class net.imglib2.util.Util
 
gLogInv(float, float) - Static method in class net.imglib2.util.Util
 
green(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
GREEN - Static variable in interface net.imglib2.display.ColorTable
 
grid - Variable in class net.imglib2.img.cell.AbstractCellImg
 
grid - Variable in class net.imglib2.img.cell.CellRandomAccess
 
gridDimension(int) - Method in class net.imglib2.img.cell.CellGrid
 
gridDimensions(long[]) - Method in class net.imglib2.img.cell.CellGrid
 

H

hasFullSourceMapping() - Method in class net.imglib2.transform.integer.MixedTransform
Check whether the transforms has a full mapping of source to target components (no source component is discarded).
hasFullSourceMapping() - Method in class net.imglib2.transform.integer.SlicingTransform
Check whether the transforms has a full mapping of source to target components (no source component is discarded).
hashCode() - Method in class net.imglib2.img.cell.CellGrid
 
hashCode() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.LongType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
hashCode() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
hashCode() - Method in class net.imglib2.type.numeric.real.FloatType
 
hashCode() - Method in class net.imglib2.util.ValuePair
 
hasNext() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
hasNext() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
hasNext() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
hasNext() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
hasNext() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Returns true if another step forward is possible.
hasNext() - Method in class net.imglib2.img.cell.CellCursor
 
hasNext() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
hasNext() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
hasNext() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
hasNext() - Method in class net.imglib2.img.list.ListCursor
 
hasNext() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
hasNext() - Method in class net.imglib2.img.planar.PlanarCursor
Note: This test is fragile in a sense that it returns true for elements after the last element as well.
hasNext() - Method in class net.imglib2.img.planar.PlanarCursor1D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarCursor2D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
Note: This test is fragile in a sense that it returns true for elements after the last element as well.
hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Returns true if another step forward is possible.
hasNext() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Returns true if another step forward is possible.
hasNext() - Method in interface net.imglib2.Iterator
Returns true if another step forward is possible.
hasNext() - Method in class net.imglib2.iterator.IntervalIterator
 
hasNext() - Method in class net.imglib2.KDTree.KDTreeCursor
 
hasNext() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
hasNext() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
hasNext() - Method in class net.imglib2.view.iteration.SlicingCursor
Returns true if another step forward is possible.
hasNext() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
hasTails() - Method in interface net.imglib2.histogram.BinMapper1d
Returns true if this bin mapping has bins on the ends of the distribution that count out of bounds values.
hasTails() - Method in class net.imglib2.histogram.Histogram1d
Returns true if the histogram has tail bins at both ends which count extreme values.
hasTails() - Method in class net.imglib2.histogram.HistogramNd
Returns true if the histogram has tail bins which count extreme values for one or more dimensions
hasTails() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
hasTails() - Method in class net.imglib2.histogram.Real1dBinMapper
 
hasTails(int) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the histogram has tail bins which count extreme values for the given dimension.
Histogram1d<T> - Class in net.imglib2.histogram
A Histogram1d is a histogram that tracks up to four kinds of values: 1) values in the center of the distribution 2) values to the left of the center of the distribution (lower tail) 3) values to the right of the center of the distribution (upper tail) 4) values outside the other areas
Histogram1d(Iterable<T>, BinMapper1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
Construct a histogram from an iterable set of data and a bin mapping algorithm.
Histogram1d(BinMapper1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
Construct a histogram from a bin mapping algorithm.
Histogram1d(Histogram1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
Construct a histogram whose bin mappings match another histogram.
histogramNd(double[], double[], long[], boolean[]) - Static method in class net.imglib2.histogram.Real1dBinMapper
This is a convenience method for creating a HistogramNd from inputs that describe a set of real 1-d based bin mappers.
histogramNd(long[], long[], boolean[]) - Static method in class net.imglib2.histogram.Integer1dBinMapper
This is a convenience method for creating a HistogramNd from inputs that describe a set of integer 1-d based bin mappers.
HistogramNd<T> - Class in net.imglib2.histogram
A HistogramNd is an n-dimensional histogram that tracks up to four kinds of values: 1) values in the center of the distribution 2) values to the left of the center of the distribution (lower tail) 3) values to the right of the center of the distribution (upper tail) 4) values outside the other areas
HistogramNd(Iterable<List<T>>, List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram from an iterable set of data and a list of bin mapping algorithms.
HistogramNd(List<Iterable<T>>, List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram from an iterable set of data and a list of bin mapping algorithms.
HistogramNd(List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram from a list of bin mapping algorithms.
HistogramNd(HistogramNd<T>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram whose bin mappings match another histogram.
hyperSlice(RandomAccessible<T>, int, long) - Static method in class net.imglib2.view.Views
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
hyperSlice(RandomAccessibleInterval<T>, int, long) - Static method in class net.imglib2.view.Views
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
HyperSlice<T> - Class in net.imglib2.view
 
HyperSlice(RandomAccessible<T>, int[], long[]) - Constructor for class net.imglib2.view.HyperSlice
Create a new HyperSlice at a position.
HyperSlice.HyperSliceRandomAccess - Class in net.imglib2.view
 
HyperSliceRandomAccess() - Constructor for class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
HyperSliceRandomAccess(Interval) - Constructor for class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
hyperSlices(RandomAccessible<T>, int...) - Static method in class net.imglib2.view.Views
Provide an (n + m)-dimensional RandomAccessible of T as an m-dimensional RandomAccessible of n-dimensional RandomAccessibles of T.
HyperSlicesView<T> - Class in net.imglib2.view
HyperSlicesView(RandomAccessible<T>, int...) - Constructor for class net.imglib2.view.HyperSlicesView
 
HyperSlicesView.HyperSlicesViewRandomAccess - Class in net.imglib2.view
 
HyperSlicesViewRandomAccess() - Constructor for class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 

I

i - Variable in class net.imglib2.converter.CompositeChannelConverter
 
i - Variable in class net.imglib2.type.AbstractBitType
 
i - Variable in class net.imglib2.type.AbstractNativeType
 
i - Variable in class net.imglib2.type.logic.BitType
 
ignoredCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values that were ignored because they could not be mapped to any bin.
ignoredCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values that were ignored because they could not be mapped to any bin.
image - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
image() - Method in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
image() - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
image() - Method in interface net.imglib2.display.screenimage.awt.AWTScreenImage
 
image() - Method in interface net.imglib2.display.screenimage.ScreenImage
 
img - Variable in class net.imglib2.img.array.AbstractArrayCursor
Source image
img - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
The underlying source ArrayImg.
img - Variable in class net.imglib2.type.AbstractBitType
 
img - Variable in class net.imglib2.type.label.BasePairCharType
 
img - Variable in class net.imglib2.type.logic.BitType
 
img - Variable in class net.imglib2.type.numeric.ARGBType
 
img - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
img - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericByteType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericIntType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericLongType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericShortType
 
img - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
img - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
 
img - Variable in class net.imglib2.type.numeric.real.DoubleType
 
img - Variable in class net.imglib2.type.numeric.real.FloatType
 
Img<T> - Interface in net.imglib2.img
An Img is a RandomAccessibleInterval that has its min at 0n and its max positive.
imgDimension(int) - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in a given dimension d.
imgDimensions(long[]) - Method in class net.imglib2.img.cell.CellGrid
Write the number of pixels in each dimension into long[].
imgFactory(Supplier<S>) - Method in class net.imglib2.img.ImgFactory
Creates the same ImgFactory for a different generic parameter if possible.
imgFactory(S) - Method in class net.imglib2.img.array.ArrayImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.cell.CellImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.ImgFactory
Creates the same ImgFactory for a different generic parameter if possible.
imgFactory(S) - Method in class net.imglib2.img.list.ListImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
ImgFactory<T> - Class in net.imglib2.img
TODO
ImgFactory() - Constructor for class net.imglib2.img.ImgFactory
 
ImgLibException - Exception Class in net.imglib2.exception
 
ImgLibException() - Constructor for exception class net.imglib2.exception.ImgLibException
 
ImgLibException(Object, String) - Constructor for exception class net.imglib2.exception.ImgLibException
 
ImgLibException(String) - Constructor for exception class net.imglib2.exception.ImgLibException
 
ImgLibException(Throwable) - Constructor for exception class net.imglib2.exception.ImgLibException
 
ImgUtil - Class in net.imglib2.util
This class contains static methods for copying image data to and from Img instances.
ImgUtil() - Constructor for class net.imglib2.util.ImgUtil
 
ImgView<T> - Class in net.imglib2.img
Allows a RandomAccessibleInterval to be treated as an Img.
ImgView(RandomAccessibleInterval<T>, ImgFactory<T>) - Constructor for class net.imglib2.img.ImgView
Deprecated.
inc - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
inc() - Method in class net.imglib2.type.logic.BitType
 
inc() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
inc() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
inc() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
inc() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
inc() - Method in class net.imglib2.type.numeric.real.FloatType
 
inc() - Method in interface net.imglib2.type.numeric.RealType
 
inc() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
incIndex() - Method in class net.imglib2.type.AbstractBitType
 
incIndex() - Method in class net.imglib2.type.AbstractNativeType
 
incIndex() - Method in class net.imglib2.type.logic.BitType
 
incIndex() - Method in interface net.imglib2.type.NativeType
Increment the index into the current data array.
incIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
incIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
incIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
incIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
 
incIndex() - Method in class net.imglib2.type.numeric.real.FloatType
 
incIndex(int) - Method in class net.imglib2.type.AbstractBitType
 
incIndex(int) - Method in class net.imglib2.type.AbstractNativeType
 
incIndex(int) - Method in class net.imglib2.type.logic.BitType
 
incIndex(int) - Method in interface net.imglib2.type.NativeType
Increases the index into the current data array by increment steps.
incIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
incIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
incIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
incIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
incIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
 
incIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
 
includesLowerBound(int, long) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the left for the given dimension.
includesLowerBound(long) - Method in interface net.imglib2.histogram.BinMapper1d
Returns true if values matching the left edge data value for a given bin are counted in the distribution.
includesLowerBound(long) - Method in class net.imglib2.histogram.Histogram1d
Returns true if the given bin interval is closed on the left
includesLowerBound(long) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
includesLowerBound(long) - Method in class net.imglib2.histogram.Real1dBinMapper
 
includesLowerBounds(long[]) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the left
includesUpperBound(int, long) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the right for the given dimension.
includesUpperBound(long) - Method in interface net.imglib2.histogram.BinMapper1d
Returns true if values matching the right edge data value for a given bin are counted in the distribution.
includesUpperBound(long) - Method in class net.imglib2.histogram.Histogram1d
Returns true if the given bin interval is closed on the right
includesUpperBound(long) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
includesUpperBound(long) - Method in class net.imglib2.histogram.Real1dBinMapper
 
includesUpperBounds(long[]) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the right
IncompatibleTypeException - Exception Class in net.imglib2.exception
Is thrown if a Type is not supported.
IncompatibleTypeException(Object, String) - Constructor for exception class net.imglib2.exception.IncompatibleTypeException
 
increment(long) - Method in class net.imglib2.histogram.Histogram1d
Directly increment a bin by position.
increment(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Increments the frequency count of a specified bin.
increment(long[]) - Method in class net.imglib2.histogram.HistogramNd
Directly increment a bin by position.
increment(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Directly increment a bin by value.
increment(T) - Method in class net.imglib2.histogram.Histogram1d
Directly increment a bin by value.
index - Variable in class net.imglib2.img.cell.CellCursor
The current index of the type.
index - Variable in class net.imglib2.img.cell.CellLocalizingCursor
The current index of the type.
index - Variable in class net.imglib2.img.cell.CellRandomAccess
The current index of the type.
index - Variable in class net.imglib2.img.planar.PlanarCursor
The current index of the type.
index - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
The current index of the type.
index - Variable in class net.imglib2.iterator.IntervalIterator
 
index - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
 
index - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
indexToGlobalPosition(int, int) - Method in class net.imglib2.img.cell.Cell
 
indexToGlobalPosition(int, int, int) - Method in class net.imglib2.img.planar.PlanarImg
Compute a global position from the index of a slice and an index within that slice.
indexToGlobalPosition(int, int, int[]) - Method in class net.imglib2.img.planar.PlanarImg
Compute a global position from the index of a slice and an index within that slice.
indexToGlobalPosition(int, long[]) - Method in class net.imglib2.img.cell.Cell
 
indexToPosition(int, int[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, Dimensions, Positionable) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
int2long(int[]) - Static method in class net.imglib2.util.Util
 
IntAccess - Interface in net.imglib2.img.basictypeaccess
TODO
IntArray - Class in net.imglib2.img.basictypeaccess.array
 
IntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.IntArray
 
IntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.IntArray
 
IntAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ShortType, ShortArray>.
IntAWTScreenImage(ArrayImg<IntType, IntArray>) - Constructor for class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
IntAWTScreenImage(IntType, IntArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
Integer1dBinMapper<T> - Class in net.imglib2.histogram
Maps integer values into a 1-d set of bins.
Integer1dBinMapper(long, long, boolean) - Constructor for class net.imglib2.histogram.Integer1dBinMapper
Specify a mapping of integral data from a user defined range into a specified number of bins.
IntegerType<T> - Interface in net.imglib2.type.numeric
TODO
Interpolant<T,F> - Class in net.imglib2.interpolation
A RealRandomAccessible that is generated through interpolation.
Interpolant(F, InterpolatorFactory<T, F>) - Constructor for class net.imglib2.interpolation.Interpolant
 
interpolate(F, InterpolatorFactory<T, F>) - Static method in class net.imglib2.view.Views
Returns a RealRandomAccessible using interpolation
interpolatedValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
InterpolatorFactory<T,F> - Interface in net.imglib2.interpolation
 
intersect(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Compute the intersection of two intervals.
intersect(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the intersection of two intervals.
interval - Variable in class net.imglib2.view.iteration.IterableTransformBuilder
The interval which should be iterated.
interval(RandomAccessible<T>, long[], long[]) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible.
interval(RandomAccessible<T>, Interval) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible.
Interval - Interface in net.imglib2
{x∈Zn|mindxdmaxd;d∈{0… n-1}}
IntervalIndexer - Class in net.imglib2.util
N-dimensional data is often stored in a flat 1-dimensional array.
IntervalIndexer() - Constructor for class net.imglib2.util.IntervalIndexer
 
IntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual Interval in flat order, that is: row by row, plane by plane, cube by cube, ...
IntervalIterator(int[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval of the given dimensions with min= 0n
IntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval with given min and max.
IntervalIterator(long[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval of the given dimensions with min= 0n
IntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval with given min and max.
IntervalIterator(Interval) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates a given Interval.
Intervals - Class in net.imglib2.util
Convenience methods for manipulating Intervals.
Intervals() - Constructor for class net.imglib2.util.Intervals
 
IntervalSampler<T> - Class in net.imglib2.display.projector.sampler
allows stepwise access to a preselected projected dimension.
IntervalSampler(int, long, long) - Constructor for class net.imglib2.display.projector.sampler.IntervalSampler
 
IntervalView<T> - Class in net.imglib2.view
IntervalView is a view that puts Interval boundaries on its source RandomAccessible.
IntervalView(RandomAccessible<T>, long[], long[]) - Constructor for class net.imglib2.view.IntervalView
Create a view that defines an interval on a source.
IntervalView(RandomAccessible<T>, Interval) - Constructor for class net.imglib2.view.IntervalView
Create a view that defines an interval on a source.
IntNtree - Class in net.imglib2.img.sparse
IntAccess based on a Ntree<Integer>.
IntNtree(long[], long[], int) - Constructor for class net.imglib2.img.sparse.IntNtree
Standard constructor called by factory
ints(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<IntType, IntArray> reusing a passed int[] array.
ints(long...) - Static method in class net.imglib2.img.array.ArrayImgs
ints(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
ints(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<IntType, IntAccess> using a IntAccess passed as argument.
IntType - Class in net.imglib2.type.numeric.integer
TODO
IntType() - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntType(int) - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.IntType
 
inverse - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
inverse - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
inverse - Variable in class net.imglib2.transform.integer.TranslationTransform
 
inverse() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
inverse() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
inverse() - Method in class net.imglib2.transform.integer.SequentializeTransform
 
inverse() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
inverse() - Method in class net.imglib2.transform.integer.TranslationTransform
 
inverse() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
inverse() - Method in class net.imglib2.transform.InverseTransform
 
inverse() - Method in interface net.imglib2.transform.InvertibleTransform
Get the inverse transform.
InverseDistanceWeightingInterpolator<T> - Class in net.imglib2.interpolation.neighborsearch
RealRandomAccess to a KNearestNeighborSearch whose sample value is generated by weighting the k nearest neighbors of a query real coordinate by their inverse distance to an arbitrary power p.
InverseDistanceWeightingInterpolator(KNearestNeighborSearch<T>, double) - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
InverseDistanceWeightingInterpolatorFactory<T> - Class in net.imglib2.interpolation.neighborsearch
Factory for InverseDistanceWeightingInterpolator instances that work on a KNearestNeighborSearch.
InverseDistanceWeightingInterpolatorFactory() - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
 
InverseDistanceWeightingInterpolatorFactory(double) - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
 
inverseLut - Variable in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
InverseShearTransform - Class in net.imglib2.transform.integer.shear
Backward implementation of the most simple case of a shear transform: coordinate[ shearDimension ] -= coordinate[ referenceDimension ]
InverseShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.InverseShearTransform
 
InverseShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.InverseShearTransform
Protected constructor for passing an inverse to avoid construction of unnecessary objects.
InverseTransform - Class in net.imglib2.transform
Final implementation of the inverse of an InvertibleTransform that simply replaces apply by applyInverse and conversely.
InverseTransform(InvertibleTransform) - Constructor for class net.imglib2.transform.InverseTransform
 
invert - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
invert() - Method in class net.imglib2.util.Fraction
Inverts this fraction by exchanging numerator and denominator
invert3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Invert a 3x3 matrix given as row major double[] in place.
invert3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
Invert a 3x3 matrix given as elements in row major order.
invertAxis(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Invert the d-axis.
invertAxis(RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.view.Views
Invert the d-axis.
InvertibleTransform - Interface in net.imglib2.transform
Invertible transformation from Zn to Zm .
invertSymmetric2x2(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
Inverts a (invertible) symmetric 2x2 matrix.
invertSymmetric3x3(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
Inverts a (invertible) symmetric 3x3 matrix.
isApproxEqual(double, double, double) - Static method in class net.imglib2.util.Util
 
isApproxEqual(float, float, float) - Static method in class net.imglib2.util.Util
 
isComponentMapping(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isComposite() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Gets whether composite mode is enabled for all positions.
isComposite() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Gets whether composite mode is enabled for all positions.
isComposite(int) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Gets whether the given position index is included in composite values.
isComposite(int) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Gets whether the given position index is included in composite values.
isDirty() - Method in interface net.imglib2.Dirty
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
isEmpty(Interval) - Static method in class net.imglib2.util.Intervals
Check whether the given interval is empty, that is, the maximum is smaller than the minimum in some dimension.
isEmpty(RealInterval) - Static method in class net.imglib2.util.Intervals
Check whether the given interval is empty, that is, the maximum is smaller than the minimum in some dimension.
isIdentity(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isInLowerTail(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is mapped to the lower tail of the distribution.
isInLowerTail(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are mapped to the lower tail of the distribution.
isInLowerTail(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is mapped to the lower tail of the distribution.
isInMiddle(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is mapped to the middle of the distribution.
isInMiddle(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are mapped to the middle of the distribution.
isInMiddle(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is mapped to the middle of the distribution.
isInUpperTail(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is mapped to the upper tail of the distribution.
isInUpperTail(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are mapped to the upper tail of the distribution.
isInUpperTail(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is mapped to the upper tail of the distribution.
isNotLastCell - Variable in class net.imglib2.img.cell.CellCursor
Caches cursorOnCells.hasNext().
isNotLastCell - Variable in class net.imglib2.img.cell.CellLocalizingCursor
Caches cursorOnCells.hasNext().
isOutOfBounds - Variable in class net.imglib2.img.cell.CellRandomAccess
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
isOutOfBounds() - Method in interface net.imglib2.outofbounds.Bounded
True if located out of image bounds.
isOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
isOutside(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is outside the distribution.
isOutside(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are outside the distribution.
isOutside(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is outside the distribution.
isSlicing(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isTranslation(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
isValid() - Method in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
isValid() - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileAccess
 
isValid() - Method in class net.imglib2.Volatile
 
isZeroMin(Interval) - Static method in class net.imglib2.view.Views
test whether the source interval starts at (0,0,...,0)
iterable - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
iterable - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
iterable(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Return an IterableInterval.
IterableInterval<T> - Interface in net.imglib2
An IterableRealInterval whose elements are located at integer coordinates.
IterableIntervalProjector2D<A,B> - Class in net.imglib2.display.projector
A general 2D Projector that uses two dimensions as input to create the 2D result.
IterableIntervalProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.IterableIntervalProjector2D
creates a new 2D projector that samples a plain in the dimensions dimX, dimY.
IterablePair<A,B> - Class in net.imglib2.util
An Iterable which is backed by two other Iterables, whose iteration produces a Pair of objects corresponding to those given by the two respective iterations of the backing Iterables.
IterablePair(Iterable<A>, Iterable<B>) - Constructor for class net.imglib2.util.IterablePair
 
IterableRandomAccessibleInterval<T> - Class in net.imglib2.view
Generates Cursors that iterate a RandomAccessibleInterval in flat order, that is: row by row, plane by plane, cube by cube, ...
IterableRandomAccessibleInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.view.IterableRandomAccessibleInterval
 
IterableRealInterval<T> - Interface in net.imglib2
f:Rn∈[0,s]→T
IterableTransformBuilder<T> - Class in net.imglib2.view.iteration
Simplifies View cascades to provide the most efficient Cursor.
IterableTransformBuilder(Interval, RandomAccessible<T>) - Constructor for class net.imglib2.view.iteration.IterableTransformBuilder
Create a new IterableTransformBuilder.
iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
iterationOrder() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
iterationOrder() - Method in class net.imglib2.histogram.Histogram1d
 
iterationOrder() - Method in class net.imglib2.histogram.HistogramNd
 
iterationOrder() - Method in class net.imglib2.img.array.ArrayImg
 
iterationOrder() - Method in class net.imglib2.img.cell.AbstractCellImg
 
iterationOrder() - Method in class net.imglib2.img.list.AbstractListImg
 
iterationOrder() - Method in class net.imglib2.img.list.AbstractLongListImg
 
iterationOrder() - Method in class net.imglib2.img.planar.PlanarImg
 
iterationOrder() - Method in class net.imglib2.img.sparse.NtreeImg
 
iterationOrder() - Method in interface net.imglib2.IterableRealInterval
Returns the iteration order of this IterableRealInterval.
iterationOrder() - Method in class net.imglib2.KDTree
 
iterationOrder() - Method in class net.imglib2.PointSampleList
 
iterationOrder() - Method in class net.imglib2.RealPointSampleList
 
iterationOrder() - Method in class net.imglib2.view.IntervalView
 
iterationOrder() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
iterator - Variable in class net.imglib2.view.composite.AbstractNumericComposite
 
iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
iterator() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
iterator() - Method in class net.imglib2.histogram.Histogram1d
 
iterator() - Method in class net.imglib2.histogram.HistogramNd
 
iterator() - Method in class net.imglib2.img.AbstractImg
 
iterator() - Method in class net.imglib2.KDTree
 
iterator() - Method in class net.imglib2.PointSampleList
 
iterator() - Method in class net.imglib2.RealPointSampleList
 
iterator() - Method in class net.imglib2.util.IterablePair
 
iterator() - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
iterator() - Method in class net.imglib2.view.IntervalView
 
iterator() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
Iterator - Interface in net.imglib2
The Iterator interface provides basic functionality for iterating over a set of elements.

J

join(List<T>) - Static method in class net.imglib2.concatenate.ConcatenateUtils
Reduce a list of objects by iteratively pre/concatenating neighboring objects if they support it.
jumpFwd(long) - Method in class net.imglib2.AbstractCursor
Highly recommended to override this with a more efficient version.
jumpFwd(long) - Method in class net.imglib2.AbstractCursorInt
Highly recommended to override this with a more efficient version.
jumpFwd(long) - Method in class net.imglib2.AbstractLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.AbstractLocalizingCursorInt
 
jumpFwd(long) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
jumpFwd(long) - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
jumpFwd(long) - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
jumpFwd(long) - Method in class net.imglib2.img.array.AbstractArrayCursor
 
jumpFwd(long) - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.img.cell.CellCursor
 
jumpFwd(long) - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.ListCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.ListLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarCursor
 
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Highly recommended to override this with a more efficient version.
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.iterator.IntervalIterator
 
jumpFwd(long) - Method in interface net.imglib2.Iterator
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
jumpFwd(long) - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
jumpFwd(long) - Method in class net.imglib2.KDTree.KDTreeCursor
 
jumpFwd(long) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
jumpFwd(long) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
jumpFwd(long) - Method in class net.imglib2.view.iteration.SlicingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 

K

k - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
k - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
KDTree<T> - Class in net.imglib2
KDTree to access values at RealLocalizable positions.
KDTree(List<T>, List<L>) - Constructor for class net.imglib2.KDTree
Construct a KDTree from the elements in the given list.
KDTree(IterableRealInterval<T>) - Constructor for class net.imglib2.KDTree
Construct a KDTree from the elements of the given IterableRealInterval.
KDTree.DimComparator<L> - Class in net.imglib2
Compare RealLocalizables by comparing their coordinates in dimension d.
KDTree.KDTreeCursor - Class in net.imglib2
 
KDTree.SamplerNode<T> - Class in net.imglib2
A KDTreeNode that stores it's value as a Sampler.
KDTree.ValueNode<T> - Class in net.imglib2
A KDTreeNode that stores it's value as a reference.
KDTreeCursor(KDTree<T>) - Constructor for class net.imglib2.KDTree.KDTreeCursor
 
KDTreeCursor(KDTree.KDTreeCursor) - Constructor for class net.imglib2.KDTree.KDTreeCursor
 
KDTreeNode<T> - Class in net.imglib2
Abstract base class for nodes in a KDTree.
KDTreeNode(KDTreeNode<T>) - Constructor for class net.imglib2.KDTreeNode
 
KDTreeNode(RealLocalizable, int, KDTreeNode<T>, KDTreeNode<T>) - Constructor for class net.imglib2.KDTreeNode
 
KNearestNeighborSearch<T> - Interface in net.imglib2.neighborsearch
k-nearest-neighbor search in an Euclidean space.
KNearestNeighborSearchOnIterableRealInterval<T> - Class in net.imglib2.neighborsearch
k-nearest-neighbor search on IterableRealInterval implemented as linear search.
KNearestNeighborSearchOnIterableRealInterval(IterableRealInterval<T>, int) - Constructor for class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
KNearestNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
Implementation of KNearestNeighborSearch search for kd-trees.
KNearestNeighborSearchOnKDTree(KDTree<T>, int) - Constructor for class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
kthElement(int, byte[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, char[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, double[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, float[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, byte[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, char[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, double[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, float[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, int[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, long[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, short[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>, int[]) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, long[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, short[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>, int[]) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int, int[]) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
KthElement - Class in net.imglib2.util
TODO
KthElement() - Constructor for class net.imglib2.util.KthElement
 

L

LanczosInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
n-dimensional double-based Lanczos Interpolation
LanczosInterpolator(LanczosInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
LanczosInterpolator(RandomAccessible<T>, int, boolean, double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolator
Creates a new Lanczos-interpolation
LanczosInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
TODO
LanczosInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory with standard parameters (do clipping, alpha=3)
LanczosInterpolatorFactory(double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
LanczosInterpolatorFactory(int, boolean) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
LanczosInterpolatorFactory(int, double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
largestContainedInterval(RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the largest Interval that is contained in the specified RealInterval.
lastIndex - Variable in class net.imglib2.img.array.AbstractArrayCursor
Last index
lastIndex - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Last index.
lastIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
lastIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
lastIndex - Variable in class net.imglib2.iterator.IntervalIterator
 
lastIndex - Variable in class net.imglib2.PointSampleList
 
lastIndex - Variable in class net.imglib2.RealPointSampleList
 
lastIndexInCell - Variable in class net.imglib2.img.cell.CellCursor
 
lastIndexInCell - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
lastSliceIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
lastSliceIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
LazyCellImg<T,A> - Class in net.imglib2.img.cell
A AbstractCellImg that obtains its Cells lazily when they are accessed.
LazyCellImg(CellGrid, Fraction, LazyCellImg.Get<Cell<A>>) - Constructor for class net.imglib2.img.cell.LazyCellImg
 
LazyCellImg(CellGrid, T, LazyCellImg.Get<Cell<A>>) - Constructor for class net.imglib2.img.cell.LazyCellImg
 
LazyCellImg.Get<T> - Interface in net.imglib2.img.cell
 
LazyCellImg.LazyCells<T> - Class in net.imglib2.img.cell
 
LazyCells(long[], LazyCellImg.Get<T>) - Constructor for class net.imglib2.img.cell.LazyCellImg.LazyCells
 
ldu(int) - Static method in class net.imglib2.util.Util
(Hopefully) fast floor log2 of an unsigned(!) integer value.
left - Variable in class net.imglib2.KDTreeNode
Left child of this node.
length - Variable in class net.imglib2.view.composite.AbstractNumericComposite
 
length(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the length of a.
LinAlgHelpers - Class in net.imglib2.util
Basic vector and matrix operations implemented on double[] and double[][].
LinAlgHelpers() - Constructor for class net.imglib2.util.LinAlgHelpers
 
LinearRange - Interface in net.imglib2.display
 
linkedType - Variable in class net.imglib2.img.AbstractNativeImg
 
linkType(NativeType, NativeImg) - Static method in class net.imglib2.img.cell.LazyCellImg
Reflection hack because there is no T NativeType <T>.create(NativeImg<?, A>) method in ImgLib2 Note that for this method to be introduced, NativeType would need an additional generic parameter A that specifies the accepted family of access objects that can be used in the NativeImg...
ListCursor<T> - Class in net.imglib2.img.list
ListCursor(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListCursor
 
ListCursor(ListCursor<T>) - Constructor for class net.imglib2.img.list.ListCursor
 
ListImg<T> - Class in net.imglib2.img.list
This Img stores an image in a single linear ArrayList.
ListImg(long[], T) - Constructor for class net.imglib2.img.list.ListImg
 
ListImg(Collection<T>, long...) - Constructor for class net.imglib2.img.list.ListImg
 
ListImgFactory<T> - Class in net.imglib2.img.list
ImgFactory for ListImg of any type T.
ListImgFactory() - Constructor for class net.imglib2.img.list.ListImgFactory
 
ListLocalizingCursor<T> - Class in net.imglib2.img.list
Localizing Cursor on a ListImg.
ListLocalizingCursor(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListLocalizingCursor
 
ListLocalizingCursor(ListLocalizingCursor<T>) - Constructor for class net.imglib2.img.list.ListLocalizingCursor
 
ListRandomAccess<T> - Class in net.imglib2.img.list
ListRandomAccess(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListRandomAccess
 
ListRandomAccess(ListRandomAccess<T>) - Constructor for class net.imglib2.img.list.ListRandomAccess
 
Localizable - Interface in net.imglib2
The Localizable interface can localize itself in an n-dimensional discrete space.
localize(double[]) - Method in class net.imglib2.AbstractCursor
 
localize(double[]) - Method in class net.imglib2.AbstractCursorInt
 
localize(double[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(double[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(double[]) - Method in class net.imglib2.AbstractRealLocalizable
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
localize(double[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(double[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(double[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(double[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(double[]) - Method in class net.imglib2.KDTree.KDTreeCursor
 
localize(double[]) - Method in class net.imglib2.KDTreeNode
 
localize(double[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
localize(double[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(double[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
localize(double[]) - Method in interface net.imglib2.RealLocalizable
Write the current position into the passed array.
localize(double[]) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
localize(double[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(double[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(double[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(double[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(double[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(double[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(double[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localize(float[]) - Method in class net.imglib2.AbstractCursor
 
localize(float[]) - Method in class net.imglib2.AbstractCursorInt
 
localize(float[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(float[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(float[]) - Method in class net.imglib2.AbstractRealLocalizable
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
localize(float[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(float[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(float[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(float[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(float[]) - Method in class net.imglib2.KDTree.KDTreeCursor
 
localize(float[]) - Method in class net.imglib2.KDTreeNode
 
localize(float[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
localize(float[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(float[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
localize(float[]) - Method in interface net.imglib2.RealLocalizable
Write the current position into the passed array.
localize(float[]) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
localize(float[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(float[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(float[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(float[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(float[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(float[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(float[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localize(int[]) - Method in class net.imglib2.AbstractCursor
 
localize(int[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(int[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(int[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(int[]) - Method in class net.imglib2.img.array.AbstractArrayCursor
 
localize(int[]) - Method in class net.imglib2.img.list.ListCursor
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor1D
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor2D
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Write the current position into the passed array.
localize(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(int[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(int[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(int[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(int[]) - Method in interface net.imglib2.Localizable
Write the current position into the passed array.
localize(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(int[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(int[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localize(long[]) - Method in class net.imglib2.AbstractCursorInt
 
localize(long[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(long[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(long[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(long[]) - Method in class net.imglib2.img.cell.CellCursor
 
localize(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
localize(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(long[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(long[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(long[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(long[]) - Method in interface net.imglib2.Localizable
Write the current position into the passed array.
localize(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(long[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(long[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
localizingCursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
localizingCursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
localizingCursor() - Method in class net.imglib2.histogram.Histogram1d
 
localizingCursor() - Method in class net.imglib2.histogram.HistogramNd
 
localizingCursor() - Method in class net.imglib2.img.array.ArrayImg
 
localizingCursor() - Method in class net.imglib2.img.cell.AbstractCellImg
 
localizingCursor() - Method in class net.imglib2.img.ImgView
 
localizingCursor() - Method in class net.imglib2.img.list.AbstractListImg
 
localizingCursor() - Method in class net.imglib2.img.list.AbstractLongListImg
 
localizingCursor() - Method in class net.imglib2.img.planar.PlanarImg
 
localizingCursor() - Method in class net.imglib2.img.sparse.NtreeImg
 
localizingCursor() - Method in interface net.imglib2.IterableInterval
 
localizingCursor() - Method in interface net.imglib2.IterableRealInterval
Returns a RealLocalizable Iterator that calculates its location at each iteration step.
localizingCursor() - Method in class net.imglib2.KDTree
 
localizingCursor() - Method in class net.imglib2.PointSampleList
 
localizingCursor() - Method in class net.imglib2.RealPointSampleList
 
localizingCursor() - Method in class net.imglib2.view.IntervalView
 
localizingCursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
localizingCursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Create a Cursor to iterate over the given Interval.
localizingCursor(Interval) - Method in class net.imglib2.img.ImgView
 
localizingCursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Create a Cursor to iterate over the given Interval.
localizingCursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Create a Cursor to iterate over the given Interval.
LocalizingIntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual Interval in flat order, that is: row by row, plane by plane, cube by cube, ...
LocalizingIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingZeroMinIntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual rectangular Interval whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ...
LocalizingZeroMinIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
LocalizingZeroMinIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
LocalizingZeroMinIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
log2(double) - Static method in class net.imglib2.util.Util
 
long2int(long[]) - Static method in class net.imglib2.util.Util
 
LongAccess - Interface in net.imglib2.img.basictypeaccess
TODO
LongArray - Class in net.imglib2.img.basictypeaccess.array
 
LongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.LongArray
 
LongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.LongArray
 
LongListCursor() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
LongListCursor(AbstractLongListImg.LongListCursor) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
LongListLocalizingCursor() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
LongListLocalizingCursor(AbstractLongListImg.LongListLocalizingCursor) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
LongListRandomAccess() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
LongListRandomAccess(AbstractLongListImg.LongListRandomAccess) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
LongNtree - Class in net.imglib2.img.sparse
LongAccess based on a Ntree<Longeger>.
LongNtree(long[], long[], long) - Constructor for class net.imglib2.img.sparse.LongNtree
Standard constructor called by factory
LongNtree(Ntree<Long>, long[]) - Constructor for class net.imglib2.img.sparse.LongNtree
 
longs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
longs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
longs(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<LongType, LongArray> reusing a passed long[] array.
longs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<LongType, LongAccess> using a LongAccess passed as argument.
LongType - Class in net.imglib2.type.numeric.integer
TODO
LongType() - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongType(long) - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.LongType
 
lookupARGB(double, double, double) - Method in class net.imglib2.display.AbstractArrayColorTable
 
lookupARGB(double, double, double) - Method in interface net.imglib2.display.ColorTable
 
lowerTailCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values in the lower tail bin (if any).
lowerTailCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in all lower tail bins (if any).
lowerTailCount(int) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in the lower tail bin (if any) for the given dimension.
lut - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
lut - Variable in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
lutScale - Static variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 

M

makeNode(List<L>, int, int, int) - Method in class net.imglib2.KDTree
makeNode(List<L>, int, int, int, List<T>, int[]) - Method in class net.imglib2.KDTree
Construct the tree by recursively adding nodes.
makeNode(ListIterator<L>, ListIterator<L>, int) - Method in class net.imglib2.KDTree
makeNode(ListIterator<L>, ListIterator<L>, int, List<T>, int[]) - Method in class net.imglib2.KDTree
Construct the tree by recursively adding nodes.
makeSamplerNode(List<RealCursor<T>>, int, int, int) - Method in class net.imglib2.KDTree
Construct the tree by recursively adding nodes.
map() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
 
map() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
map() - Method in class net.imglib2.display.projector.IterableIntervalProjector2D
projects data from the source to the target and applies the former specified Converter e.g.
map() - Method in interface net.imglib2.display.projector.Projector
 
map() - Method in class net.imglib2.display.projector.RandomAccessibleProjector2D
projects data from the source to the target and applies the former specified Converter e.g.
map() - Method in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
map() - Method in class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
 
map() - Method in class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
 
map() - Method in class net.imglib2.display.projector.specialized.PlanarImgXYByteProjector
 
map() - Method in class net.imglib2.display.projector.specialized.PlanarImgXYShortProjector
 
map() - Method in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
projects data from the source to the target and applies the former specified Converter e.g.
map(List<T>, long[]) - Method in class net.imglib2.histogram.HistogramNd
Fills a bin position by mapping from a set of representative values.
map(T) - Method in interface net.imglib2.histogram.BinMapper1d
Converts a data value to a long index within the bin distribution.
map(T) - Method in class net.imglib2.histogram.Histogram1d
Returns a bin position by mapping from a representative value.
map(T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
map(T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
mapSingle(RandomAccess<A>, Converter<A, ARGBType>) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
 
mapSingle(RandomAccess<A>, Converter<A, ARGBType>) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
max - Variable in class net.imglib2.AbstractInterval
 
max - Variable in class net.imglib2.AbstractRealInterval
 
max - Variable in class net.imglib2.display.AbstractLinearRange
 
max - Variable in class net.imglib2.display.projector.AbstractProjector2D
 
max - Variable in class net.imglib2.img.AbstractImg
 
max - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Maximum of the ArrayImg in every dimension.
max - Variable in class net.imglib2.img.cell.Cell
 
max - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
Maximum of the PlanarImg in every dimension.
max - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
max - Variable in class net.imglib2.KDTree
maximum of each dimension.
max - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
max - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
Maximum of the wrapped RandomAccessible.
max - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
max - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
Maximum of the wrapped RandomAccessible.
max - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
max - Variable in class net.imglib2.RealPointSampleList
 
max - Variable in class net.imglib2.view.SubsampleIntervalView
 
max() - Method in class net.imglib2.histogram.Histogram1d
 
max(double[]) - Static method in class net.imglib2.util.Util
 
max(double[], double[]) - Static method in class net.imglib2.util.Util
Writes max(a,b) into a
max(int) - Method in class net.imglib2.AbstractInterval
 
max(int) - Method in class net.imglib2.AbstractWrappedInterval
 
max(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
max(int) - Method in class net.imglib2.histogram.Histogram1d
 
max(int) - Method in class net.imglib2.histogram.HistogramNd
 
max(int) - Method in class net.imglib2.img.AbstractImg
 
max(int) - Method in interface net.imglib2.Interval
Get the maximum in dimension d.
max(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
max(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
max(long[]) - Method in class net.imglib2.AbstractInterval
 
max(long[]) - Method in class net.imglib2.AbstractWrappedInterval
 
max(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
max(long[]) - Method in class net.imglib2.histogram.Histogram1d
 
max(long[]) - Method in class net.imglib2.histogram.HistogramNd
 
max(long[]) - Method in class net.imglib2.img.AbstractImg
 
max(long[]) - Method in interface net.imglib2.Interval
Write the maximum of each dimension into long[].
max(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
max(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
max(List<Float>) - Static method in class net.imglib2.util.Util
 
max(Positionable) - Method in class net.imglib2.AbstractInterval
 
max(Positionable) - Method in class net.imglib2.AbstractWrappedInterval
 
max(Positionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
max(Positionable) - Method in class net.imglib2.histogram.Histogram1d
 
max(Positionable) - Method in class net.imglib2.histogram.HistogramNd
 
max(Positionable) - Method in class net.imglib2.img.AbstractImg
 
max(Positionable) - Method in interface net.imglib2.Interval
Sets a Positionable to the maximum of this Interval
max(Positionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
max(Positionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
max(T, T) - Static method in class net.imglib2.util.Util
 
maxAsDoubleArray(RealInterval) - Static method in class net.imglib2.util.Intervals
Create a double[] with the maximum of a RealInterval .
maxAsIntArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a int[] with the maximum of an Interval.
maxAsLongArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a long[] with the maximum of an Interval.
maxSourceDimension - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
maxTargetDimension - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
maxValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
maxValue - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
median(double[]) - Static method in class net.imglib2.util.Util
 
median(float[]) - Static method in class net.imglib2.util.Util
 
median(long[]) - Static method in class net.imglib2.util.Util
 
min - Variable in class net.imglib2.AbstractInterval
 
min - Variable in class net.imglib2.AbstractRealInterval
 
min - Variable in class net.imglib2.display.AbstractLinearRange
 
min - Variable in class net.imglib2.display.projector.AbstractProjector2D
 
min - Variable in class net.imglib2.img.cell.Cell
 
min - Variable in class net.imglib2.KDTree
minimum of each dimension.
min - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Minimum of the wrapped RandomAccessible.
min - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
min - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
Minimum of the wrapped RandomAccessible.
min - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
Minimum of the wrapped RandomAccessible.
min - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
min - Variable in class net.imglib2.RealPointSampleList
 
min() - Method in class net.imglib2.histogram.Histogram1d
 
min(double[]) - Static method in class net.imglib2.util.Util
 
min(double[], double[]) - Static method in class net.imglib2.util.Util
Writes min(a,b) into a
min(int) - Method in class net.imglib2.AbstractInterval
 
min(int) - Method in class net.imglib2.AbstractWrappedInterval
 
min(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
min(int) - Method in class net.imglib2.histogram.Histogram1d
 
min(int) - Method in class net.imglib2.histogram.HistogramNd
 
min(int) - Method in class net.imglib2.img.AbstractImg
 
min(int) - Method in class net.imglib2.img.cell.Cell
 
min(int) - Method in interface net.imglib2.Interval
Get the minimum in dimension d.
min(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
min(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
min(long[]) - Method in class net.imglib2.AbstractInterval
 
min(long[]) - Method in class net.imglib2.AbstractWrappedInterval
 
min(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
min(long[]) - Method in class net.imglib2.histogram.Histogram1d
 
min(long[]) - Method in class net.imglib2.histogram.HistogramNd
 
min(long[]) - Method in class net.imglib2.img.AbstractImg
 
min(long[]) - Method in class net.imglib2.img.cell.Cell
Write the minimum of each dimension into long[].
min(long[]) - Method in interface net.imglib2.Interval
Write the minimum of each dimension into long[].
min(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
min(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
min(List<Float>) - Static method in class net.imglib2.util.Util
 
min(Positionable) - Method in class net.imglib2.AbstractInterval
 
min(Positionable) - Method in class net.imglib2.AbstractWrappedInterval
 
min(Positionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
min(Positionable) - Method in class net.imglib2.histogram.Histogram1d
 
min(Positionable) - Method in class net.imglib2.histogram.HistogramNd
 
min(Positionable) - Method in class net.imglib2.img.AbstractImg
 
min(Positionable) - Method in interface net.imglib2.Interval
Sets a Positionable to the minimum of this Interval
min(Positionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
min(Positionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
min(T, T) - Static method in class net.imglib2.util.Util
 
minAsDoubleArray(RealInterval) - Static method in class net.imglib2.util.Intervals
Create a double[] with the minimum of a RealInterval .
minAsIntArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a int[] with the minimum of an Interval.
minAsLongArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a long[] with the minimum of an Interval.
minThreshold - Static variable in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
minValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
minValue - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
mirror - Variable in class net.imglib2.img.planar.PlanarImg
 
Mixed - Interface in net.imglib2.transform.integer
Mixed transform allows to express common integer view transformations such as translation, rotation, rotoinversion, and projection.
MixedRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Mixed transformToSource.
MixedRandomAccess(MixedRandomAccess<T>) - Constructor for class net.imglib2.view.MixedRandomAccess
 
MixedTransform - Class in net.imglib2.transform.integer
Mixed transform allows to express common integer view transformations such as translation, rotation, rotoinversion, and projection.
MixedTransform(int, int) - Constructor for class net.imglib2.transform.integer.MixedTransform
 
MixedTransformView<T> - Class in net.imglib2.view
TODO
MixedTransformView(RandomAccessible<T>, Mixed) - Constructor for class net.imglib2.view.MixedTransformView
 
modeCount() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the highest frequency count found within the bins.
modePositions() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns a list of bin positions of the highest frequency bins.
move(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(double[]) - Method in class net.imglib2.position.transform.Floor
 
move(double[]) - Method in class net.imglib2.position.transform.FloorOffset
 
move(double[]) - Method in class net.imglib2.position.transform.Round
 
move(double[]) - Method in class net.imglib2.RealPoint
 
move(double[]) - Method in interface net.imglib2.RealPositionable
Move the element relative to its current location using a float[] as distance vector.
move(double, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(double, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(double, int) - Method in class net.imglib2.position.transform.Floor
 
move(double, int) - Method in class net.imglib2.position.transform.FloorOffset
 
move(double, int) - Method in class net.imglib2.position.transform.Round
 
move(double, int) - Method in class net.imglib2.RealPoint
 
move(double, int) - Method in interface net.imglib2.RealPositionable
Move the element in one dimension for some distance.
move(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(float[]) - Method in class net.imglib2.position.transform.Floor
 
move(float[]) - Method in class net.imglib2.position.transform.FloorOffset
 
move(float[]) - Method in class net.imglib2.position.transform.Round
 
move(float[]) - Method in class net.imglib2.RealPoint
 
move(float[]) - Method in interface net.imglib2.RealPositionable
Move the element relative to its current location using a float[] as distance vector.
move(float, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(float, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(float, int) - Method in class net.imglib2.position.transform.Floor
 
move(float, int) - Method in class net.imglib2.position.transform.FloorOffset
 
move(float, int) - Method in class net.imglib2.position.transform.Round
 
move(float, int) - Method in class net.imglib2.RealPoint
 
move(float, int) - Method in interface net.imglib2.RealPositionable
Move the element in one dimension for some distance.
move(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(int[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(int[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(int[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(int[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(int[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(int[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(int[]) - Method in class net.imglib2.Point
 
move(int[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(int[]) - Method in interface net.imglib2.Positionable
Move the element relative to its current location using an int[] as distance vector.
move(int[]) - Method in class net.imglib2.RealPoint
 
move(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(int[]) - Method in class net.imglib2.view.MixedRandomAccess
 
move(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(int[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(int[]) - Method in class net.imglib2.view.TransformRandomAccess
 
move(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(int, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(int, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(int, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(int, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(int, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(int, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(int, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(int, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(int, int) - Method in class net.imglib2.Point
 
move(int, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(int, int) - Method in interface net.imglib2.Positionable
Move the element in one dimension for some distance.
move(int, int) - Method in class net.imglib2.RealPoint
 
move(int, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(int, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(int, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(int, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(int, int) - Method in class net.imglib2.view.MixedRandomAccess
 
move(int, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(int, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(int, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(int, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(int, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(int, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(int, int) - Method in class net.imglib2.view.TransformRandomAccess
 
move(int, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(long) - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves n steps in dimension 0
move(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(long[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(long[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(long[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(long[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(long[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(long[]) - Method in class net.imglib2.Point
 
move(long[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(long[]) - Method in interface net.imglib2.Positionable
Move the element relative to its current location using a long[] as distance vector.
move(long[]) - Method in class net.imglib2.RealPoint
 
move(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(long[]) - Method in class net.imglib2.view.MixedRandomAccess
 
move(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(long[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(long[]) - Method in class net.imglib2.view.TransformRandomAccess
 
move(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(long, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(long, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(long, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(long, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(long, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(long, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(long, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(long, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Override with a more efficient version.
move(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(long, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(long, int) - Method in class net.imglib2.Point
 
move(long, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(long, int) - Method in interface net.imglib2.Positionable
Move the element in one dimension for some distance.
move(long, int) - Method in class net.imglib2.RealPoint
 
move(long, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(long, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(long, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(long, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(long, int) - Method in class net.imglib2.view.MixedRandomAccess
 
move(long, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(long, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(long, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(long, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(long, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(long, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(long, int) - Method in class net.imglib2.view.TransformRandomAccess
 
move(long, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(Localizable) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(Localizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.Point
 
move(Localizable) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(Localizable) - Method in interface net.imglib2.Positionable
Move the element relative to its current location using an Localizable as distance vector.
move(Localizable) - Method in class net.imglib2.RealPoint
 
move(Localizable) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.MixedRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(Localizable) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(Localizable) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(Localizable) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(Localizable) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.TransformRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.position.transform.Floor
 
move(RealLocalizable) - Method in class net.imglib2.position.transform.FloorOffset
 
move(RealLocalizable) - Method in class net.imglib2.position.transform.Round
 
move(RealLocalizable) - Method in class net.imglib2.RealPoint
 
move(RealLocalizable) - Method in interface net.imglib2.RealPositionable
Move the element relative to its current location using a RealLocalizable as distance vector.
MOVE_ALL_SLICE_ACCESSES - Enum constant in enum net.imglib2.view.StackView.StackAccessMode
Alternative behavior for some special cases; this is faster assuming that we access in a loop over dimensions with the last dimension (the hyper-slice dimension) in the inner loop.
MoveAllSlicesRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.MoveAllSlicesRA
 
MoveAllSlicesRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.MoveAllSlicesRA
 
moveDim0(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves n steps in dimension 0
mul(double) - Method in class net.imglib2.type.logic.BitType
 
mul(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
mul(double) - Method in class net.imglib2.type.numeric.ARGBType
 
mul(double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
mul(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
mul(double) - Method in class net.imglib2.type.numeric.real.FloatType
 
mul(double) - Method in interface net.imglib2.type.operators.MulFloatingPoint
 
mul(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
mul(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
mul(double) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
mul(float) - Method in class net.imglib2.type.logic.BitType
 
mul(float) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
mul(float) - Method in class net.imglib2.type.numeric.ARGBType
 
mul(float) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
mul(float) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
mul(float) - Method in class net.imglib2.type.numeric.real.FloatType
 
mul(float) - Method in interface net.imglib2.type.operators.MulFloatingPoint
 
mul(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
mul(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
mul(float) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
mul(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
mul(BitType) - Method in class net.imglib2.type.logic.BitType
 
mul(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
mul(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
mul(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
mul(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
mul(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
mul(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
mul(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
mul(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
mul(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
mul(Fraction) - Method in class net.imglib2.util.Fraction
 
mul(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
mul(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
mul(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
mul(T) - Method in interface net.imglib2.type.operators.Mul
 
mul(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
mul(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
Mul<T> - Interface in net.imglib2.type.operators
 
mulCeil(long) - Method in class net.imglib2.util.Fraction
Multiply the value with this fraction.
MulFloatingPoint - Interface in net.imglib2.type.operators
 
mult(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A * B.
mult(double[][], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = A * b.
multABT(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A * B^T.
multATB(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A^T * B.
multT(double[][], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = A^T * b.

N

n - Variable in class net.imglib2.AbstractEuclideanSpace
the number of dimensions.
n - Variable in class net.imglib2.img.AbstractImg
 
n - Variable in class net.imglib2.img.cell.Cell
 
n - Variable in class net.imglib2.KDTree
the number of dimensions.
n - Variable in class net.imglib2.KDTreeNode
number of dimensions of the space (that is, k).
n - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
n - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
n - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
n - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
n - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
n - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
n - Variable in class net.imglib2.RealPointSampleList
 
n - Variable in class net.imglib2.transform.integer.BoundingBox
 
n - Variable in class net.imglib2.view.composite.CompositeView
 
n - Variable in class net.imglib2.view.MixedTransformView
 
n - Variable in class net.imglib2.view.TransformView
 
N - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
NativeARGBDoubleType - Class in net.imglib2.type.numeric
 
NativeARGBDoubleType() - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeARGBDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeARGBDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeImg<T,A> - Interface in net.imglib2.img
TODO
NativeImgFactory<T> - Class in net.imglib2.img
TODO
NativeImgFactory() - Constructor for class net.imglib2.img.NativeImgFactory
 
NativeType<T> - Interface in net.imglib2.type
A NativeType is a Type that that provides access to data stored in Java primitive arrays.
nBits - Variable in class net.imglib2.type.AbstractBitType
 
nDim - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
NearestNeighborInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
RealRandomAccess to a RandomAccess by nearest neighbor interpolation.
NearestNeighborInterpolator(NearestNeighborInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
NearestNeighborInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
NearestNeighborInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
 
NearestNeighborInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
 
NearestNeighborSearch<T> - Interface in net.imglib2.neighborsearch
Nearest-neighbor search in an Euclidean space.
NearestNeighborSearchInterpolator<T> - Class in net.imglib2.interpolation.neighborsearch
Nearest-neighbor interpolation implemented by NearestNeighborSearch.
NearestNeighborSearchInterpolator(NearestNeighborSearch<T>) - Constructor for class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
NearestNeighborSearchInterpolatorFactory<T> - Class in net.imglib2.interpolation.neighborsearch
Factory for NearestNeighborSearchInterpolator instances that work on a NearestNeighborSearch.
NearestNeighborSearchInterpolatorFactory() - Constructor for class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
 
NearestNeighborSearchOnIterableRealInterval<T> - Class in net.imglib2.neighborsearch
k-nearest-neighbor search on IterableRealInterval implemented as linear search.
NearestNeighborSearchOnIterableRealInterval(IterableRealInterval<T>) - Constructor for class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
NearestNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
Implementation of NearestNeighborSearch search for kd-trees.
NearestNeighborSearchOnKDTree(KDTree<T>) - Constructor for class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
net.imglib2 - package net.imglib2
 
net.imglib2.concatenate - package net.imglib2.concatenate
 
net.imglib2.converter - package net.imglib2.converter
 
net.imglib2.converter.read - package net.imglib2.converter.read
 
net.imglib2.converter.readwrite - package net.imglib2.converter.readwrite
 
net.imglib2.display - package net.imglib2.display
 
net.imglib2.display.awt - package net.imglib2.display.awt
 
net.imglib2.display.projector - package net.imglib2.display.projector
 
net.imglib2.display.projector.composite - package net.imglib2.display.projector.composite
 
net.imglib2.display.projector.sampler - package net.imglib2.display.projector.sampler
 
net.imglib2.display.projector.specialized - package net.imglib2.display.projector.specialized
 
net.imglib2.display.projector.volatiles - package net.imglib2.display.projector.volatiles
 
net.imglib2.display.screenimage - package net.imglib2.display.screenimage
 
net.imglib2.display.screenimage.awt - package net.imglib2.display.screenimage.awt
 
net.imglib2.exception - package net.imglib2.exception
 
net.imglib2.histogram - package net.imglib2.histogram
 
net.imglib2.img - package net.imglib2.img
 
net.imglib2.img.array - package net.imglib2.img.array
 
net.imglib2.img.basictypeaccess - package net.imglib2.img.basictypeaccess
 
net.imglib2.img.basictypeaccess.array - package net.imglib2.img.basictypeaccess.array
 
net.imglib2.img.basictypeaccess.volatiles - package net.imglib2.img.basictypeaccess.volatiles
 
net.imglib2.img.basictypeaccess.volatiles.array - package net.imglib2.img.basictypeaccess.volatiles.array
 
net.imglib2.img.cell - package net.imglib2.img.cell
 
net.imglib2.img.list - package net.imglib2.img.list
 
net.imglib2.img.planar - package net.imglib2.img.planar
 
net.imglib2.img.sparse - package net.imglib2.img.sparse
 
net.imglib2.interpolation - package net.imglib2.interpolation
 
net.imglib2.interpolation.neighborsearch - package net.imglib2.interpolation.neighborsearch
 
net.imglib2.interpolation.randomaccess - package net.imglib2.interpolation.randomaccess
 
net.imglib2.iterator - package net.imglib2.iterator
 
net.imglib2.neighborsearch - package net.imglib2.neighborsearch
 
net.imglib2.outofbounds - package net.imglib2.outofbounds
 
net.imglib2.position.transform - package net.imglib2.position.transform
 
net.imglib2.transform - package net.imglib2.transform
 
net.imglib2.transform.integer - package net.imglib2.transform.integer
 
net.imglib2.transform.integer.permutation - package net.imglib2.transform.integer.permutation
 
net.imglib2.transform.integer.shear - package net.imglib2.transform.integer.shear
 
net.imglib2.type - package net.imglib2.type
 
net.imglib2.type.label - package net.imglib2.type.label
 
net.imglib2.type.logic - package net.imglib2.type.logic
 
net.imglib2.type.numeric - package net.imglib2.type.numeric
 
net.imglib2.type.numeric.complex - package net.imglib2.type.numeric.complex
 
net.imglib2.type.numeric.integer - package net.imglib2.type.numeric.integer
 
net.imglib2.type.numeric.real - package net.imglib2.type.numeric.real
 
net.imglib2.type.operators - package net.imglib2.type.operators
 
net.imglib2.type.volatiles - package net.imglib2.type.volatiles
 
net.imglib2.util - package net.imglib2.util
 
net.imglib2.view - package net.imglib2.view
 
net.imglib2.view.composite - package net.imglib2.view.composite
 
net.imglib2.view.iteration - package net.imglib2.view.iteration
 
next() - Method in class net.imglib2.AbstractCursor
 
next() - Method in class net.imglib2.AbstractCursorInt
 
next() - Method in class net.imglib2.AbstractLocalizingCursor
 
next() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
next() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
next() - Method in class net.imglib2.img.sparse.NtreeCursor
 
next() - Method in class net.imglib2.KDTree.KDTreeCursor
 
next() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
next() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
next() - Method in class net.imglib2.view.iteration.SlicingCursor
next() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
NLinearInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
Performs multi-linear interpolation.
NLinearInterpolator(NLinearInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
NLinearInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
NLinearInterpolator(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
NLinearInterpolator1D<T> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolator1D(NLinearInterpolator1D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
NLinearInterpolator1D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
NLinearInterpolator1D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
NLinearInterpolator2D<T> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolator2D(NLinearInterpolator2D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
NLinearInterpolator2D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
NLinearInterpolator2D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
NLinearInterpolator3D<T> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolator3D(NLinearInterpolator3D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
NLinearInterpolator3D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
NLinearInterpolator3D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
NLinearInterpolatorARGB - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for ARGB values with overflow check.
NLinearInterpolatorARGB(NLinearInterpolatorARGB) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
NLinearInterpolatorARGB(RandomAccessible<ARGBType>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
NLinearInterpolatorARGB(RandomAccessible<ARGBType>, ARGBType) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
NLinearInterpolatorARGBFactory - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolatorARGBFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
 
NLinearInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
 
normalize(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
normalize a, i.e., scale to unit length.
not() - Method in interface net.imglib2.type.BooleanType
 
not() - Method in class net.imglib2.type.logic.BitType
 
not() - Method in class net.imglib2.type.logic.BoolType
 
Ntree<T> - Class in net.imglib2.img.sparse
N-dimensional equivalent of a quad/oct-tree.
Ntree(long[], T) - Constructor for class net.imglib2.img.sparse.Ntree
Create a ntree structure capable of representing an array of the given dimensions.
Ntree.NtreeNode<T> - Class in net.imglib2.img.sparse
 
NtreeAccess<L,A> - Interface in net.imglib2.img.sparse
 
NtreeCursor<T> - Class in net.imglib2.img.sparse
 
NtreeCursor(NtreeImg<T, ?>) - Constructor for class net.imglib2.img.sparse.NtreeCursor
 
NtreeImg<T,A> - Class in net.imglib2.img.sparse
 
NtreeImg(A, long[], Fraction) - Constructor for class net.imglib2.img.sparse.NtreeImg
 
NtreeImg.PositionProvider - Interface in net.imglib2.img.sparse
 
NtreeImgFactory<T> - Class in net.imglib2.img.sparse
 
NtreeImgFactory() - Constructor for class net.imglib2.img.sparse.NtreeImgFactory
 
NtreeIntAccess - Class in net.imglib2.img.sparse
IntAccess based on a Ntree<Integer>.
NtreeIntAccess(Ntree<Integer>, long[]) - Constructor for class net.imglib2.img.sparse.NtreeIntAccess
 
NtreeNode(Ntree.NtreeNode<T>, T) - Constructor for class net.imglib2.img.sparse.Ntree.NtreeNode
 
NtreeRandomAccess<T> - Class in net.imglib2.img.sparse
 
NtreeRandomAccess(NtreeImg<T, ?>) - Constructor for class net.imglib2.img.sparse.NtreeRandomAccess
 
numChannels - Variable in class net.imglib2.view.composite.NumericComposite.Factory
 
numChannels - Variable in class net.imglib2.view.composite.RealComposite.Factory
 
numDimensions - Variable in class net.imglib2.view.HyperSlice
 
numDimensions - Variable in class net.imglib2.view.HyperSlicesView
 
numDimensions() - Method in class net.imglib2.AbstractEuclideanSpace
 
numDimensions() - Method in class net.imglib2.AbstractWrappedRealInterval
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
numDimensions() - Method in interface net.imglib2.EuclideanSpace
Gets the space's number of dimensions.
numDimensions() - Method in class net.imglib2.FinalDimensions
 
numDimensions() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
numDimensions() - Method in class net.imglib2.histogram.Histogram1d
Return the number of dimensions of the frequency distribution of this histogram.
numDimensions() - Method in class net.imglib2.histogram.HistogramNd
Return the number of dimensions of the frequency distribution of this histogram.
numDimensions() - Method in class net.imglib2.img.AbstractImg
 
numDimensions() - Method in class net.imglib2.img.cell.CellGrid
 
numDimensions() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
numDimensions() - Method in class net.imglib2.interpolation.Interpolant
 
numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
numDimensions() - Method in class net.imglib2.KDTree.KDTreeCursor
 
numDimensions() - Method in class net.imglib2.KDTree
 
numDimensions() - Method in class net.imglib2.KDTreeNode
 
numDimensions() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
numDimensions() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
numDimensions() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
numDimensions() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
numDimensions() - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
numDimensions() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
numDimensions() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
numDimensions() - Method in class net.imglib2.RealPointSampleList
 
numDimensions() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
numDimensions() - Method in class net.imglib2.transform.integer.BoundingBox
 
numDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
numDimensions() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
numDimensions() - Method in class net.imglib2.view.composite.CompositeView
 
numDimensions() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
numDimensions() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
numDimensions() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
numDimensions() - Method in class net.imglib2.view.HyperSlice
 
numDimensions() - Method in class net.imglib2.view.HyperSlicesView
 
numDimensions() - Method in class net.imglib2.view.MixedTransformView
 
numDimensions() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.view.RandomAccessiblePair
 
numDimensions() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
numDimensions() - Method in class net.imglib2.view.StackView.DefaultRA
 
numDimensions() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
numDimensions() - Method in class net.imglib2.view.SubsampleView
 
numDimensions() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
numDimensions() - Method in class net.imglib2.view.TransformView
 
numElements(int...) - Static method in class net.imglib2.util.Intervals
Compute the number of elements contained in an (integer) interval.
numElements(long[]) - Static method in class net.imglib2.img.AbstractImg
 
numElements(long...) - Static method in class net.imglib2.util.Intervals
Compute the number of elements contained in an (integer) interval.
numElements(Dimensions) - Static method in class net.imglib2.util.Intervals
Compute the number of elements contained in an (integer) Interval .
numEntities - Variable in class net.imglib2.img.AbstractNativeImg
 
numEntitiesRangeCheck(long[], Fraction) - Static method in class net.imglib2.img.array.ArrayImgFactory
 
NumericComposite<T> - Class in net.imglib2.view.composite
A vector of NumericType scalars.
NumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.NumericComposite
 
NumericComposite.Factory<T> - Class in net.imglib2.view.composite
 
NumericType<T> - Interface in net.imglib2.type.numeric
TODO
numNeighbors() - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Get the number of points found within radius after a RadiusNeighborSearch.search(RealLocalizable, double, boolean).
numNeighbors() - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
numPixels - Variable in class net.imglib2.img.AbstractImg
 
numSlices - Variable in class net.imglib2.img.planar.PlanarImg
 
numSlices() - Method in class net.imglib2.img.planar.PlanarImg
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.MixedTransform
dimension of source vector.
numSourceDimensions - Variable in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
dimension of source vector.
numSourceDimensions - Variable in class net.imglib2.transform.integer.SlicingTransform
dimension of source vector.
numSourceDimensions() - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.MixedTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.SequentializeTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.SlicingTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.InverseTransform
 
numSourceDimensions() - Method in interface net.imglib2.transform.Transform
Returns n, the dimension of the source vector.
numTargetDimensions - Variable in class net.imglib2.transform.integer.AbstractMixedTransform
dimension of target vector.
numTargetDimensions - Variable in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numTargetDimensions - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numTargetDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
dimension of target vector.
numTargetDimensions() - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.SequentializeTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.InverseTransform
 
numTargetDimensions() - Method in interface net.imglib2.transform.Transform
Returns m, the dimension of the target vector.

O

offset - Variable in class net.imglib2.img.array.AbstractArrayCursor
Offset of this cursor
offset - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Offset of this cursor.
offset - Variable in class net.imglib2.position.transform.FloorOffset
 
offset(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Translate such that pixel at offset in randomAccessible is at the origin in the resulting view.
offset(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Translate such that pixel at offset in interval is at the origin in the resulting view.
OffsetableIntervalIterator - Class in net.imglib2.iterator
A IntervalIterator that has an adjustable offset
OffsetableIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableLocalizingIntervalIterator - Class in net.imglib2.iterator
A LocalizingIntervalIterator that has an adjustable offset
OffsetableLocalizingIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
offsetInterval(RandomAccessible<T>, long[], long[]) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
offsetInterval(RandomAccessible<T>, Interval) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
oobCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
 
oobCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
 
or(boolean) - Method in class net.imglib2.type.logic.BoolType
 
or(BitType) - Method in class net.imglib2.type.logic.BitType
 
or(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
or(T) - Method in interface net.imglib2.type.BooleanType
 
orderMinMax() - Method in class net.imglib2.transform.integer.BoundingBox
flip coordinates between corner1 and corner2 such that corner1 is the min of the bounding box and corner2 is the max.
outer(double[], double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute outer product, set C = a * b^T.
outOfBounds - Variable in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
performs the actual moves and generates/queries a Type
OutOfBounds<T> - Interface in net.imglib2.outofbounds
 
OutOfBoundsBorder<T> - Class in net.imglib2.outofbounds
Repeat the boundary pixels.
OutOfBoundsBorder(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorder
 
OutOfBoundsBorder(OutOfBoundsBorder<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorder
 
OutOfBoundsBorderFactory<T,F> - Class in net.imglib2.outofbounds
Strategy to repeat the boundary pixels (creates OutOfBoundsBorder).
OutOfBoundsBorderFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorderFactory
 
OutOfBoundsConstantValue<T> - Class in net.imglib2.outofbounds
 
OutOfBoundsConstantValue(F, T) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
OutOfBoundsConstantValue(OutOfBoundsConstantValue<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
OutOfBoundsConstantValueFactory<T,F> - Class in net.imglib2.outofbounds
 
OutOfBoundsConstantValueFactory(T) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
OutOfBoundsFactory<T,F> - Interface in net.imglib2.outofbounds
 
OutOfBoundsMirrorDoubleBoundary<T> - Class in net.imglib2.outofbounds
Coordinates out of image bounds are mirrored between boundary coordinates.
OutOfBoundsMirrorDoubleBoundary(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
OutOfBoundsMirrorDoubleBoundary(OutOfBoundsMirrorDoubleBoundary<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
OutOfBoundsMirrorExpWindowing<T> - Class in net.imglib2.outofbounds
Adds a exponential windowing to the mirrored content outside the Interval boundaries
OutOfBoundsMirrorExpWindowing(F, int[], float) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
OutOfBoundsMirrorExpWindowing(OutOfBoundsMirrorExpWindowing<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
OutOfBoundsMirrorExpWindowingFactory<T,F> - Class in net.imglib2.outofbounds
TODO
OutOfBoundsMirrorExpWindowingFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorExpWindowingFactory(float) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorExpWindowingFactory(int) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorExpWindowingFactory(int[]) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorFactory<T,F> - Class in net.imglib2.outofbounds
Create appropriate strategies that virtually mirror a RandomAccessible at its boundaries.
OutOfBoundsMirrorFactory(OutOfBoundsMirrorFactory.Boundary) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
OutOfBoundsMirrorFactory.Boundary - Enum in net.imglib2.outofbounds
 
OutOfBoundsMirrorSingleBoundary<T> - Class in net.imglib2.outofbounds
Coordinates out of image bounds are mirrored at boundary coordinates.
OutOfBoundsMirrorSingleBoundary(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
OutOfBoundsMirrorSingleBoundary(OutOfBoundsMirrorSingleBoundary<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
OutOfBoundsPeriodic<T> - Class in net.imglib2.outofbounds
Coordinates out of image bounds are periodically repeated.
OutOfBoundsPeriodic(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
OutOfBoundsPeriodic(OutOfBoundsPeriodic<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
OutOfBoundsPeriodicFactory<T,F> - Class in net.imglib2.outofbounds
Create appropriate strategies that virtually extend a RandomAccessibleInterval periodically.
OutOfBoundsPeriodicFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
 
outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
OutOfBoundsRandomValue<T> - Class in net.imglib2.outofbounds
Return a random value in a certain range when outside of the Interval
OutOfBoundsRandomValue(F, T, Random, double, double) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
OutOfBoundsRandomValue(OutOfBoundsRandomValue<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
OutOfBoundsRandomValueFactory<T,F> - Class in net.imglib2.outofbounds
 
OutOfBoundsRandomValueFactory(T, double, double) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 

P

p - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Period of the extended interval.
pair(RandomAccessible<A>, RandomAccessible<B>) - Static method in class net.imglib2.view.Views
Compose two RandomAccessible sources into a RandomAccessible of Pair.
Pair<A,B> - Interface in net.imglib2.util
 
Partition - Class in net.imglib2.util
TODO
Partition() - Constructor for class net.imglib2.util.Partition
 
partitionSubList(int, int, byte[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, char[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, double[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, float[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, int[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, long[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, short[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, List<T>) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(int, int, List<T>, int[]) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(int, int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(int, int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(ListIterator<T>, ListIterator<T>) - Static method in class net.imglib2.util.Partition
Partition a sublist.
partitionSubList(ListIterator<T>, ListIterator<T>, int[]) - Static method in class net.imglib2.util.Partition
Partition a sublist.
partitionSubList(ListIterator<T>, ListIterator<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist.
partitionSubList(ListIterator<T>, ListIterator<T>, Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist.
pastMax - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
pastMax - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
percentile(double[], double) - Static method in class net.imglib2.util.Util
Computes the percentile of a collection of doubles (percentile 0.5 roughly corresponds to median)
PermutationTransform - Class in net.imglib2.transform.integer.permutation
Bijective integer transform mapping between integer coordinates in [0,n-1].
PermutationTransform(int[], int, int) - Constructor for class net.imglib2.transform.integer.permutation.PermutationTransform
 
permute(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Create view with permuted axes.
permute(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
Create view with permuted axes.
permuteCoordinateInverse(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
permuteCoordinates(RandomAccessibleInterval<T>, int[]) - Static method in class net.imglib2.view.Views
Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.
permuteCoordinates(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
Bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.
permuteCoordinatesInverse(RandomAccessibleInterval<T>, int[]) - Static method in class net.imglib2.view.Views
Inverse Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.
permuteCoordinatesInverse(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
Inverse bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.
piSquare - Static variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
PlanarAccess<A> - Interface in net.imglib2.img.basictypeaccess
Interface allowing access to data on a plane-by-plane basis.
PlanarCursor<T> - Class in net.imglib2.img.planar
Basic Iterator for PlanarContainers
PlanarCursor(PlanarCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarCursor
 
PlanarCursor(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor
 
PlanarCursor1D<T> - Class in net.imglib2.img.planar
Basic Iterator for 1d PlanarContainers
PlanarCursor1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor1D
 
PlanarCursor2D<T> - Class in net.imglib2.img.planar
Basic Iterator for 2d PlanarContainers
PlanarCursor2D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor2D
 
PlanarImg<T,A> - Class in net.imglib2.img.planar
A NativeImg that stores data in an list of primitive arrays, one per image plane.
PlanarImg(long[], Fraction) - Constructor for class net.imglib2.img.planar.PlanarImg
 
PlanarImg.PlanarContainerSampler - Interface in net.imglib2.img.planar
This interface is implemented by all samplers on the PlanarImg.
PlanarImgContainerSamplerImpl - Class in net.imglib2.display.projector.specialized
Helps to sample a planar image by keeping track of the current slice.
PlanarImgContainerSamplerImpl(int) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
PlanarImgFactory<T> - Class in net.imglib2.img.planar
Factory that creates an appropriate PlanarImg.
PlanarImgFactory() - Constructor for class net.imglib2.img.planar.PlanarImgFactory
 
PlanarImgs - Class in net.imglib2.img.planar
Convenience factory methods for creation of PlanarImg instances with the most common pixel Type variants.
PlanarImgXYByteProjector<A> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from a ByteType PlanarImg.
PlanarImgXYByteProjector(PlanarImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgXYByteProjector
Normalizes a PlanarImg and writes the result into target.
PlanarImgXYShortProjector<A> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType PlanarImg.
PlanarImgXYShortProjector(PlanarImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgXYShortProjector
Normalizes a PlanarImg and writes the result into target.
PlanarLocalizingCursor<T> - Class in net.imglib2.img.planar
Localizing Iterator for a PlanarContainers
PlanarLocalizingCursor(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor
 
PlanarLocalizingCursor(PlanarLocalizingCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor
 
PlanarLocalizingCursor1D<T> - Class in net.imglib2.img.planar
TODO
PlanarLocalizingCursor1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
PlanarLocalizingCursor1D(PlanarLocalizingCursor1D<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
PlanarLocalizingCursor2D<T> - Class in net.imglib2.img.planar
TODO
PlanarLocalizingCursor2D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
PlanarLocalizingCursor2D(PlanarLocalizingCursor2D<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
PlanarPlaneSubsetCursor<T> - Class in net.imglib2.img.planar
Basic Iterator for PlanarContainers
PlanarPlaneSubsetCursor(PlanarImg<T, ?>, Interval) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Constructor
PlanarPlaneSubsetCursor(PlanarPlaneSubsetCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Copy Constructor
PlanarPlaneSubsetLocalizingCursor<T> - Class in net.imglib2.img.planar
Cursor optimized for one plane in an PlanarImg.
PlanarPlaneSubsetLocalizingCursor(PlanarImg<T, ?>, Interval) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Constructor
PlanarPlaneSubsetLocalizingCursor(PlanarPlaneSubsetLocalizingCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Copy Constructor
PlanarRandomAccess<T> - Class in net.imglib2.img.planar
PlanarRandomAccess(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess
 
PlanarRandomAccess(PlanarRandomAccess<T>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess
 
PlanarRandomAccess1D<T> - Class in net.imglib2.img.planar
RandomAccess for a 1-dimensional PlanarImg.
PlanarRandomAccess1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess1D
 
Point - Class in net.imglib2
A Point is a position in Euclidean space specified in integer coordinates.
Point(int) - Constructor for class net.imglib2.Point
Create a point in nDimensional space initialized to 0,0,...
Point(int...) - Constructor for class net.imglib2.Point
Create a point at a definite location in a space of the dimensionality of the position.
Point(long...) - Constructor for class net.imglib2.Point
Create a point at a definite location in a space of the dimensionality of the position.
Point(long[], boolean) - Constructor for class net.imglib2.Point
Protected constructor that can re-use the passed position array.
Point(Localizable) - Constructor for class net.imglib2.Point
Create a point using the position and dimensionality of a Localizable
PointSampleList<T> - Class in net.imglib2
A list of data samples at explicit integer coordinates.
PointSampleList(int) - Constructor for class net.imglib2.PointSampleList
 
PointSampleList.PointSampleListCursor - Class in net.imglib2
 
PointSampleListCursor() - Constructor for class net.imglib2.PointSampleList.PointSampleListCursor
 
pos - Variable in class net.imglib2.KDTreeNode
coordinates of the node.
pos - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
pos - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
pos - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
position - Variable in class net.imglib2.AbstractLocalizable
The Localizable interface is implemented using the position stored here.
position - Variable in class net.imglib2.AbstractLocalizableInt
The Localizable interface is implemented using the position stored here.
position - Variable in class net.imglib2.AbstractRealLocalizable
The RealLocalizable interface is implemented using the position stored here.
position - Variable in class net.imglib2.iterator.LocalizingIntervalIterator
 
position - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
 
position - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
 
position - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
position - Variable in class net.imglib2.view.HyperSlice
 
Positionable - Interface in net.imglib2
An element that can be positioned in n-dimensional discrete space.
positionToIndex(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndex(long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndex(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndex(Localizable, Dimensions) - Static method in class net.imglib2.util.IntervalIndexer
 
positionWithOffsetToIndex(int[], int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionWithOffsetToIndex(long[], int[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionWithOffsetToIndex(long[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
pow(int, int) - Static method in class net.imglib2.util.Util
 
preComputeWeights(int, int[], float) - Static method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
PreConcatenable<A> - Interface in net.imglib2.concatenate
If T implements PreConcatenable<A> that means you can pre-concatenate it with an A, usually resulting in another T.
preConcatenate(A) - Method in interface net.imglib2.concatenate.PreConcatenable
Pre-concatenate this object with a.
preConcatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
preConcatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
 
preConcatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
 
preConcatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
preConcatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
 
prependTransform(Transform) - Method in class net.imglib2.view.TransformBuilder
Prepend a transform to the TransformBuilder.transforms list.
print(List<?>) - Static method in class net.imglib2.concatenate.ConcatenateUtils
 
printCoordinates(boolean[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(double[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(float[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(int[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(long[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(RealLocalizable) - Static method in class net.imglib2.util.Util
 
printInterval(Interval) - Static method in class net.imglib2.util.Util
 
products - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
ProjectedSampler<T> - Interface in net.imglib2.display.projector.sampler
provides samples from a projected (SamplingProjector2D) dimension.
Projector - Interface in net.imglib2.display.projector
 

Q

quaternionApply(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Apply quaternion rotation q to 3D point p, set qp = q * p.
quaternionFromAngleAxis(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute a quaternion from rotation axis and angle.
quaternionFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute a unit quaternion from a rotation matrix.
quaternionInvert(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
invert quaternion, set q = p^{-1}.
quaternionMultiply(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the quaternion product pq = p * q.
quaternionPower(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the power of a quaternion q raised to the exponent a.
quaternionToR(double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute a rotation matrix from a unit quaternion.
quicksort(double[]) - Static method in class net.imglib2.util.Util
 
quicksort(double[], int[], int, int) - Static method in class net.imglib2.util.Util
 
quicksort(double[], int, int) - Static method in class net.imglib2.util.Util
 
quicksort(float[]) - Static method in class net.imglib2.util.Util
 
quicksort(float[], int, int) - Static method in class net.imglib2.util.Util
 
quicksort(long[], int, int) - Static method in class net.imglib2.util.Util
 

R

r - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
R - Enum constant in enum net.imglib2.converter.ChannelARGBConverter.Channel
 
RadiusNeighborSearch<T> - Interface in net.imglib2.neighborsearch
Radius neighbor search in an Euclidean space.
RadiusNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
Implementation of RadiusNeighborSearch search for kd-trees.
RadiusNeighborSearchOnKDTree(KDTree<T>) - Constructor for class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
randomAccess() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
randomAccess() - Method in class net.imglib2.histogram.Histogram1d
 
randomAccess() - Method in class net.imglib2.histogram.HistogramNd
 
randomAccess() - Method in class net.imglib2.img.array.ArrayImg
 
randomAccess() - Method in class net.imglib2.img.cell.AbstractCellImg
 
randomAccess() - Method in class net.imglib2.img.list.AbstractListImg
 
randomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg
 
randomAccess() - Method in class net.imglib2.img.planar.PlanarImg
 
randomAccess() - Method in class net.imglib2.img.sparse.NtreeImg
 
randomAccess() - Method in interface net.imglib2.RandomAccessible
Create a random access sampler for integer coordinates.
randomAccess() - Method in class net.imglib2.view.composite.CompositeView
 
randomAccess() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.view.HyperSlice
 
randomAccess() - Method in class net.imglib2.view.HyperSlicesView
 
randomAccess() - Method in class net.imglib2.view.IntervalView
 
randomAccess() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.view.MixedTransformView
 
randomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
randomAccess() - Method in class net.imglib2.view.RandomAccessiblePair
 
randomAccess() - Method in class net.imglib2.view.StackView
 
randomAccess() - Method in class net.imglib2.view.SubsampleView
 
randomAccess() - Method in class net.imglib2.view.TransformView
 
randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
randomAccess(Interval) - Method in class net.imglib2.histogram.Histogram1d
 
randomAccess(Interval) - Method in class net.imglib2.histogram.HistogramNd
 
randomAccess(Interval) - Method in class net.imglib2.img.AbstractImg
 
randomAccess(Interval) - Method in class net.imglib2.img.array.ArrayImg
 
randomAccess(Interval) - Method in interface net.imglib2.RandomAccessible
Create a random access sampler for integer coordinates.
randomAccess(Interval) - Method in class net.imglib2.view.composite.CompositeView
 
randomAccess(Interval) - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.view.HyperSlice
 
randomAccess(Interval) - Method in class net.imglib2.view.HyperSlicesView
 
randomAccess(Interval) - Method in class net.imglib2.view.IntervalView
 
randomAccess(Interval) - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.view.MixedTransformView
 
randomAccess(Interval) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.view.RandomAccessiblePair
 
randomAccess(Interval) - Method in class net.imglib2.view.StackView
 
randomAccess(Interval) - Method in class net.imglib2.view.SubsampleView
 
randomAccess(Interval) - Method in class net.imglib2.view.TransformView
 
RandomAccess<T> - Interface in net.imglib2
 
RandomAccess() - Constructor for class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
RandomAccessible<T> - Interface in net.imglib2
f:Zn→T
RandomAccessibleInterval<T> - Interface in net.imglib2
f:{x∈Zn|[min,max]→T}
RandomAccessibleIntervalCursor<T> - Class in net.imglib2.view
A Cursor that iterates any RandomAccessibleInterval by moving a RandomAccess in flat iteration order.
RandomAccessibleIntervalCursor(I) - Constructor for class net.imglib2.view.RandomAccessibleIntervalCursor
 
RandomAccessibleIntervalCursor(RandomAccessibleIntervalCursor<T>) - Constructor for class net.imglib2.view.RandomAccessibleIntervalCursor
 
RandomAccessibleOnRealRandomAccessible<T> - Class in net.imglib2.view
RandomAccessibleOnRealRandomAccessible(RealRandomAccessible<T>) - Constructor for class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible - Class in net.imglib2.view
 
RandomAccessiblePair<A,B> - Class in net.imglib2.view
A RandomAccessible over two independent RandomAccessibles whose type is the Pair of corresponding values at the same coordinates in either of the two sources.
RandomAccessiblePair(RandomAccessible<A>, RandomAccessible<B>) - Constructor for class net.imglib2.view.RandomAccessiblePair
 
RandomAccessiblePair.RandomAccess - Class in net.imglib2.view
 
RandomAccessibleProjector2D<A,B> - Class in net.imglib2.display.projector
A general 2D Projector that uses two dimensions as input to create the 2D result.
RandomAccessibleProjector2D(int, int, RandomAccessible<A>, RandomAccessibleInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.RandomAccessibleProjector2D
creates a new 2D projector that samples a plain in the dimensions dimX, dimY.
randomAccessOnCells - Variable in class net.imglib2.img.cell.CellRandomAccess
 
RandomAccessOnRealRandomAccessible(RealRandomAccess<T>) - Constructor for class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
range - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
raster(RealRandomAccessible<T>) - Static method in class net.imglib2.view.Views
Turns a RealRandomAccessible into a RandomAccessible, providing RandomAccess at integer coordinates.
Real1dBinMapper<T> - Class in net.imglib2.histogram
Maps real values into a 1-d set of bins.
Real1dBinMapper(double, double, long, boolean) - Constructor for class net.imglib2.histogram.Real1dBinMapper
Specify a mapping of real data from a user defined range into a specified number of bins.
RealARGBConverter<R> - Class in net.imglib2.converter
 
RealARGBConverter() - Constructor for class net.imglib2.converter.RealARGBConverter
 
RealARGBConverter(double, double) - Constructor for class net.imglib2.converter.RealARGBConverter
 
RealComposite<T> - Class in net.imglib2.view.composite
A vector of RealType scalars.
RealComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.RealComposite
 
RealComposite.Factory<T> - Class in net.imglib2.view.composite
 
RealCursor<T> - Interface in net.imglib2
A RealCursor iterates over a set of RealLocalizable elements, for example intensity values sampled at a finite set of arbitrary real positions.
RealDoubleConverter<R> - Class in net.imglib2.converter
Converts any RealType to a DoubleType.
RealDoubleConverter() - Constructor for class net.imglib2.converter.RealDoubleConverter
 
RealDoubleSamplerConverter<R> - Class in net.imglib2.converter.readwrite
TODO
RealDoubleSamplerConverter() - Constructor for class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
 
RealFloatConverter<R> - Class in net.imglib2.converter
 
RealFloatConverter() - Constructor for class net.imglib2.converter.RealFloatConverter
 
RealFloatSamplerConverter<R> - Class in net.imglib2.converter.readwrite
TODO
RealFloatSamplerConverter() - Constructor for class net.imglib2.converter.readwrite.RealFloatSamplerConverter
 
RealInterval - Interface in net.imglib2
{x∈Rn|mindxdmaxd;d∈{0… n-1}}
RealLocalizable - Interface in net.imglib2
The RealLocalizable interface can localize itself in an n-dimensional real space.
RealLUTConverter<R> - Class in net.imglib2.converter
RealLUTConverter contains a ColorTable8, through which samples are filtered.
RealLUTConverter() - Constructor for class net.imglib2.converter.RealLUTConverter
 
RealLUTConverter(double, double, ColorTable) - Constructor for class net.imglib2.converter.RealLUTConverter
 
realMax() - Method in class net.imglib2.histogram.Histogram1d
 
realMax(double[]) - Method in class net.imglib2.AbstractInterval
 
realMax(double[]) - Method in class net.imglib2.AbstractRealInterval
 
realMax(double[]) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMax(double[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMax(double[]) - Method in class net.imglib2.histogram.Histogram1d
 
realMax(double[]) - Method in class net.imglib2.histogram.HistogramNd
 
realMax(double[]) - Method in class net.imglib2.img.AbstractImg
 
realMax(double[]) - Method in class net.imglib2.KDTree
 
realMax(double[]) - Method in interface net.imglib2.RealInterval
Write the maximum of each dimension into double[].
realMax(double[]) - Method in class net.imglib2.RealPointSampleList
 
realMax(double[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMax(double[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMax(int) - Method in class net.imglib2.AbstractInterval
 
realMax(int) - Method in class net.imglib2.AbstractRealInterval
 
realMax(int) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMax(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMax(int) - Method in class net.imglib2.histogram.Histogram1d
 
realMax(int) - Method in class net.imglib2.histogram.HistogramNd
 
realMax(int) - Method in class net.imglib2.img.AbstractImg
 
realMax(int) - Method in class net.imglib2.KDTree
 
realMax(int) - Method in interface net.imglib2.RealInterval
Get the maximum in dimension d.
realMax(int) - Method in class net.imglib2.RealPointSampleList
 
realMax(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMax(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMax(RealPositionable) - Method in class net.imglib2.AbstractInterval
 
realMax(RealPositionable) - Method in class net.imglib2.AbstractRealInterval
 
realMax(RealPositionable) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMax(RealPositionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMax(RealPositionable) - Method in class net.imglib2.histogram.Histogram1d
 
realMax(RealPositionable) - Method in class net.imglib2.histogram.HistogramNd
 
realMax(RealPositionable) - Method in class net.imglib2.img.AbstractImg
 
realMax(RealPositionable) - Method in class net.imglib2.KDTree
 
realMax(RealPositionable) - Method in interface net.imglib2.RealInterval
Sets a RealPositionable to the maximum of this Interval
realMax(RealPositionable) - Method in class net.imglib2.RealPointSampleList
 
realMax(RealPositionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMax(RealPositionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMin() - Method in class net.imglib2.histogram.Histogram1d
 
realMin(double[]) - Method in class net.imglib2.AbstractInterval
 
realMin(double[]) - Method in class net.imglib2.AbstractRealInterval
 
realMin(double[]) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMin(double[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMin(double[]) - Method in class net.imglib2.histogram.Histogram1d
 
realMin(double[]) - Method in class net.imglib2.histogram.HistogramNd
 
realMin(double[]) - Method in class net.imglib2.img.AbstractImg
 
realMin(double[]) - Method in class net.imglib2.KDTree
 
realMin(double[]) - Method in interface net.imglib2.RealInterval
Write the minimum of each dimension into double[].
realMin(double[]) - Method in class net.imglib2.RealPointSampleList
 
realMin(double[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMin(double[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMin(int) - Method in class net.imglib2.AbstractInterval
 
realMin(int) - Method in class net.imglib2.AbstractRealInterval
 
realMin(int) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMin(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMin(int) - Method in class net.imglib2.histogram.Histogram1d
 
realMin(int) - Method in class net.imglib2.histogram.HistogramNd
 
realMin(int) - Method in class net.imglib2.img.AbstractImg
 
realMin(int) - Method in class net.imglib2.KDTree
 
realMin(int) - Method in interface net.imglib2.RealInterval
Get the minimum in dimension d.
realMin(int) - Method in class net.imglib2.RealPointSampleList
 
realMin(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMin(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMin(RealPositionable) - Method in class net.imglib2.AbstractInterval
 
realMin(RealPositionable) - Method in class net.imglib2.AbstractRealInterval
 
realMin(RealPositionable) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMin(RealPositionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMin(RealPositionable) - Method in class net.imglib2.histogram.Histogram1d
 
realMin(RealPositionable) - Method in class net.imglib2.histogram.HistogramNd
 
realMin(RealPositionable) - Method in class net.imglib2.img.AbstractImg
 
realMin(RealPositionable) - Method in class net.imglib2.KDTree
 
realMin(RealPositionable) - Method in interface net.imglib2.RealInterval
Sets a RealPositionable to the minimum of this Interval
realMin(RealPositionable) - Method in class net.imglib2.RealPointSampleList
 
realMin(RealPositionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMin(RealPositionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
RealOutOfBounds<T> - Interface in net.imglib2.outofbounds
 
RealOutOfBoundsFactory<T,F> - Interface in net.imglib2.outofbounds
 
RealOutOfBoundsRealRandomAccess<T> - Class in net.imglib2.outofbounds
 
RealOutOfBoundsRealRandomAccess(int, RealOutOfBounds<T>) - Constructor for class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
RealOutOfBoundsRealRandomAccess(RealOutOfBoundsRealRandomAccess<T>) - Constructor for class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
RealPoint - Class in net.imglib2
A point is a location in EuclideanSpace.
RealPoint(double...) - Constructor for class net.imglib2.RealPoint
Create a point at a definite location in a space of the dimensionality of the position.
RealPoint(double[], boolean) - Constructor for class net.imglib2.RealPoint
Protected constructor that can re-use the passed position array.
RealPoint(float...) - Constructor for class net.imglib2.RealPoint
Create a point at a definite location in a space of the dimensionality of the position.
RealPoint(int) - Constructor for class net.imglib2.RealPoint
Create a point in nDimensional space initialized to 0,0,...
RealPoint(RealLocalizable) - Constructor for class net.imglib2.RealPoint
Create a point using the position and dimensionality of a RealLocalizable
RealPointSampleList<T> - Class in net.imglib2
A list of data samples at explicit real coordinates.
RealPointSampleList(int) - Constructor for class net.imglib2.RealPointSampleList
 
RealPointSampleList.RealPointSampleListCursor - Class in net.imglib2
 
RealPointSampleListCursor() - Constructor for class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
RealPositionable - Interface in net.imglib2
An element that can be positioned in n-dimensional real space.
realRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
realRandomAccess() - Method in class net.imglib2.interpolation.Interpolant
 
realRandomAccess() - Method in interface net.imglib2.RealRandomAccessible
Create a random access sampler for real coordinates.
realRandomAccess() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
realRandomAccess(RealInterval) - Method in class net.imglib2.interpolation.Interpolant
 
realRandomAccess(RealInterval) - Method in interface net.imglib2.RealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
RealRandomAccess<T> - Interface in net.imglib2
 
RealRandomAccessible<T> - Interface in net.imglib2
f:Rn→T
RealRandomAccessibleRealInterval<T> - Interface in net.imglib2
f:{x∈Rn|[min,max]→T}
RealSum - Class in net.imglib2.util
RealSum implements a method to reduce numerical instabilities when summing up a very large number of double precision numbers.
RealSum() - Constructor for class net.imglib2.util.RealSum
Create a new RealSum.
RealSum(int) - Constructor for class net.imglib2.util.RealSum
Create a new RealSum.
RealType<T> - Interface in net.imglib2.type.numeric
TODO
RealUnsignedByteConverter<R> - Class in net.imglib2.converter
 
RealUnsignedByteConverter() - Constructor for class net.imglib2.converter.RealUnsignedByteConverter
 
RealUnsignedByteConverter(double, double) - Constructor for class net.imglib2.converter.RealUnsignedByteConverter
 
RealUnsignedShortConverter<R> - Class in net.imglib2.converter
 
RealUnsignedShortConverter() - Constructor for class net.imglib2.converter.RealUnsignedShortConverter
 
RealUnsignedShortConverter(double, double) - Constructor for class net.imglib2.converter.RealUnsignedShortConverter
 
red(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
RED - Static variable in interface net.imglib2.display.ColorTable
 
referenceDimension - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
referenceLocation - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
referenceLocation - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
relativeFrequency(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the relative frequency (0 <= f <= 1) associated with a given bin.
relativeFrequency(long[], boolean) - Method in class net.imglib2.histogram.HistogramNd
Returns the relative frequency of values within a bin.
relativeFrequency(long, boolean) - Method in class net.imglib2.histogram.Histogram1d
Returns the relative frequency of values within a bin.
relativeFrequency(List<T>, boolean) - Method in class net.imglib2.histogram.HistogramNd
Returns the relative frequency of values within a bin using a set of representative values.
relativeFrequency(T, boolean) - Method in class net.imglib2.histogram.Histogram1d
Returns the relative frequency of values within a bin using a representative value.
remove() - Method in class net.imglib2.AbstractCursor
 
remove() - Method in class net.imglib2.AbstractCursorInt
 
remove() - Method in class net.imglib2.AbstractLocalizingCursor
 
remove() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
remove() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
remove() - Method in class net.imglib2.img.sparse.NtreeCursor
 
remove() - Method in class net.imglib2.KDTree.KDTreeCursor
 
remove() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
remove() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
remove() - Method in class net.imglib2.view.iteration.SlicingCursor
remove() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
reset() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
reset() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
reset() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
reset() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
reset() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.img.cell.CellCursor
 
reset() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
reset() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
reset() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
reset() - Method in class net.imglib2.img.list.ListCursor
 
reset() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
reset() - Method in class net.imglib2.img.planar.PlanarCursor
 
reset() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
reset() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.iterator.IntervalIterator
 
reset() - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
reset() - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
reset() - Method in interface net.imglib2.Iterator
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.KDTree.KDTreeCursor
 
reset() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
reset() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
reset() - Method in class net.imglib2.view.iteration.SlicingCursor
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
resetCounters() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Resets all frequency counts to zero.
resetCounters() - Method in class net.imglib2.histogram.Histogram1d
Resets all data counts to 0.
resetCounters() - Method in class net.imglib2.histogram.HistogramNd
Resets all data counts to 0.
resetKernel() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
resultPoints - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
rgba(double, double, double, double) - Static method in class net.imglib2.type.numeric.ARGBType
 
rgba(float, float, float, float) - Static method in class net.imglib2.type.numeric.ARGBType
 
rgba(int, int, int, int) - Static method in class net.imglib2.type.numeric.ARGBType
 
right - Variable in class net.imglib2.KDTreeNode
Right child of this node.
rnd - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
rnd - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
root - Variable in class net.imglib2.KDTree
 
rotate(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Create view that is rotated by 90 degrees.
rotate(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
Create view that is rotated by 90 degrees.
round(double) - Static method in class net.imglib2.position.transform.Round
 
round(double) - Static method in class net.imglib2.util.Util
 
round(double[], long[]) - Static method in class net.imglib2.position.transform.Round
 
round(float) - Static method in class net.imglib2.position.transform.Round
 
round(float) - Static method in class net.imglib2.util.Util
 
round(float[], long[]) - Static method in class net.imglib2.position.transform.Round
 
round(RealLocalizable, long[]) - Static method in class net.imglib2.position.transform.Round
 
Round<LocalizablePositionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to its round discrete coordinates: f = r < 0 ? (long)( r - 0.5 ) : (long)( r + 0.5 )
Round(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Round
 
Round(RealLocalizable, LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Round
 
roundPositive(double) - Static method in class net.imglib2.display.AbstractLinearRange
 
rows(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
 
rows(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 

S

sample - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
 
sample - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
sampler - Variable in class net.imglib2.KDTree.SamplerNode
 
sampler - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
Sampler<T> - Interface in net.imglib2
The Sampler interface provides access to a value whose type is specified by the generic parameter T.
SamplerConverter<A,B> - Interface in net.imglib2.converter.readwrite
TODO
SamplerNode(KDTree.SamplerNode<T>) - Constructor for class net.imglib2.KDTree.SamplerNode
 
SamplerNode(Sampler<T>, RealLocalizable, int, KDTree.SamplerNode<T>, KDTree.SamplerNode<T>) - Constructor for class net.imglib2.KDTree.SamplerNode
 
samples - Variable in class net.imglib2.PointSampleList
 
samples - Variable in class net.imglib2.RealPointSampleList
 
SamplingProjector2D<A,B> - Class in net.imglib2.display.projector.sampler
A general 2D Projector that uses three dimensions as input to create the 2D result.
SamplingProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<ProjectedSampler<A>, B>, int, long[]) - Constructor for class net.imglib2.display.projector.sampler.SamplingProjector2D
 
SamplingProjector2D(int, int, RandomAccessibleInterval<A>, IterableInterval<B>, Converter<ProjectedSampler<A>, B>, int) - Constructor for class net.imglib2.display.projector.sampler.SamplingProjector2D
 
scale - Static variable in class net.imglib2.converter.ARGBARGBDoubleConverter
 
scale - Variable in class net.imglib2.display.AbstractLinearRange
 
scale(double[][], double, double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A * b, where A is a matrix and b is scalar.
scale(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a * b, where a is a vector and b is scalar.
ScreenImage<T> - Interface in net.imglib2.display.screenimage
Toplevel interface for screen images.
search - Variable in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
search - Variable in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
search(RealLocalizable) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Perform k-nearest-neighbor search for a reference coordinate.
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
search(RealLocalizable) - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Perform nearest-neighbor search for a reference coordinate.
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
search(RealLocalizable, double, boolean) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Perform neighbor search within a radius about a reference coordinate.
search(RealLocalizable, double, boolean) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
searchNode(KDTreeNode<T>) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
searchNode(KDTreeNode<T>) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
searchNode(KDTreeNode<T>, double) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
SelectiveSampler<T> - Class in net.imglib2.display.projector.sampler
Provides access to a set of predefined positions of a projected dimension
SelectiveSampler(int, long[]) - Constructor for class net.imglib2.display.projector.sampler.SelectiveSampler
 
seqDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
SequentializeTransform - Class in net.imglib2.transform.integer
Transform n-dimensional to m-dimensional coordinates (m<n) by flattening dimensions >m.
SequentializeTransform(long[], int) - Constructor for class net.imglib2.transform.integer.SequentializeTransform
 
set(boolean) - Method in interface net.imglib2.type.BooleanType
 
set(boolean) - Method in class net.imglib2.type.logic.BitType
 
set(boolean) - Method in class net.imglib2.type.logic.BoolType
 
set(byte) - Method in class net.imglib2.type.numeric.integer.ByteType
 
set(byte[]) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
The first byte is the most significant byte, like in BigInteger.toByteArray().
set(double) - Method in class net.imglib2.type.numeric.real.DoubleType
 
set(double, double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
set(double, double, double, double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
set(double, double, double, double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
set(double, double, double, double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
set(float) - Method in class net.imglib2.type.numeric.real.FloatType
 
set(float, float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
set(int) - Method in class net.imglib2.type.numeric.ARGBType
 
set(int) - Method in class net.imglib2.type.numeric.integer.IntType
 
set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
set(int, T) - Method in class net.imglib2.img.list.AbstractListImg
 
set(int, T) - Method in class net.imglib2.img.list.ListImg
 
set(long) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.LongType
 
set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
set(long, long) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
set(long, T) - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
set(long, T) - Method in class net.imglib2.img.list.AbstractLongListImg
 
set(short) - Method in class net.imglib2.type.numeric.integer.ShortType
 
set(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
set(BigInteger) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
set(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
set(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
set parameters to transform.
set(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
set parameters to transform.
set(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
set parameters to transform.
set(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
set(BasePairBitType.Base) - Method in interface net.imglib2.type.BasePairType
 
set(BasePairBitType.Base) - Method in class net.imglib2.type.label.BasePairBitType
 
set(BasePairBitType.Base) - Method in class net.imglib2.type.label.BasePairCharType
 
set(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
set(BitType) - Method in class net.imglib2.type.logic.BitType
 
set(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
set(ARGBDoubleType) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
set(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
set(ComplexDoubleType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
set(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
set(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
set(NativeARGBDoubleType) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
set(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
set(T) - Method in class net.imglib2.img.list.ListCursor
 
set(T) - Method in class net.imglib2.img.list.ListLocalizingCursor
 
set(T) - Method in class net.imglib2.img.list.ListRandomAccess
 
set(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
set(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
set(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
set(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
set(T) - Method in interface net.imglib2.type.Type
Sets the value of another Type.
set(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
set(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setA(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setA(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setA(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setAlpha(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Set the rectangular radius of the window for perfoming the lanczos interpolation
setB(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setB(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setB(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.BitType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.BoolType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ByteType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.IntType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.LongType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ShortType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setBigInteger(BigInteger) - Method in interface net.imglib2.type.numeric.IntegerType
 
setBits(long) - Method in class net.imglib2.type.AbstractBit64Type
Sets the lower nBits bits of the long value into the current "subLong" location of the LongAccess Note that "long value" does not refer to math, it is just a way to help to set arbitrary values.
setByte(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteType
Sets the primitive byte value that is used to store this type.
setChar(char) - Method in class net.imglib2.type.label.BasePairCharType
 
setChildren(Ntree.NtreeNode<T>[]) - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
setClipping(boolean) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
The lanczos-interpolation can create values that are bigger or smaller than the original values, so they can be clipped to the range of the RealType if wanted
setCol(int, double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set column c of B to vector a.
setCommonFadeOutDistance(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setCommonRelativeFadeOutDistance(float) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setComplexNumber(double, double) - Method in interface net.imglib2.type.numeric.ComplexType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setComplexNumber(float, float) - Method in interface net.imglib2.type.numeric.ComplexType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
Set for each target component, whether the source component it is taken from should be inverted.
setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
Set for each target dimensions from which source dimension it is taken.
setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.MixedTransform
Set for each target dimensions from which source dimension it is taken.
setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
Set for each target dimensions from which source dimension it is taken.
setComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
Set which target dimensions are _not_ taken from source dimensions.
setComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.SlicingTransform
Set which target dimensions are _not_ taken from source dimensions.
setComposite(boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Toggles composite mode globally.
setComposite(boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Toggles composite mode globally.
setComposite(int, boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Toggles the given position index's inclusion in composite values.
setComposite(int, boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Toggles the given position index's inclusion in composite values.
setCurrentSlice(int) - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
setDirty() - Method in interface net.imglib2.Dirty
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
setElem(int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
setElem(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElem(int, int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
setElem(int, int, int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
setElem(int, int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemDouble(int, double) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemDouble(int, int, double) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemFloat(int, float) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemFloat(int, int, float) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setExponent(float) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setFadeOutDistance(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setFrequency(long[], long) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Sets the frequency count associated with a given bin.
setG(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setG(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setG(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setImaginary(double) - Method in interface net.imglib2.type.numeric.ComplexType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setImaginary(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setImaginary(float) - Method in interface net.imglib2.type.numeric.ComplexType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setImaginary(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setInt(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
Sets the primitive int value that is used to store this type.
setInteger(int) - Method in class net.imglib2.type.logic.BitType
 
setInteger(int) - Method in class net.imglib2.type.logic.BoolType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.ByteType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.IntType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.LongType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.ShortType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setInteger(int) - Method in interface net.imglib2.type.numeric.IntegerType
 
setInteger(long) - Method in class net.imglib2.type.logic.BitType
 
setInteger(long) - Method in class net.imglib2.type.logic.BoolType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.ByteType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.IntType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.LongType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.ShortType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setInteger(long) - Method in interface net.imglib2.type.numeric.IntegerType
 
setInverseTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
setLinkedType(T) - Method in class net.imglib2.img.AbstractNativeImg
 
setLinkedType(T) - Method in interface net.imglib2.img.NativeImg
 
setLong(long) - Method in class net.imglib2.type.numeric.integer.GenericLongType
Sets the primitive long value that is used to store this type.
setLUT(ColorTable) - Method in class net.imglib2.converter.RealLUTConverter
 
setMax(double) - Method in class net.imglib2.display.AbstractLinearRange
 
setMax(double) - Method in interface net.imglib2.display.LinearRange
 
setMin(double) - Method in class net.imglib2.display.AbstractLinearRange
 
setMin(double) - Method in interface net.imglib2.display.LinearRange
 
setMin(int[]) - Method in class net.imglib2.iterator.OffsetableIntervalIterator
Adjust the offset and reset the iterator
setMin(int[]) - Method in class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
Adjust the offset and reset the iterator
setMin(long[]) - Method in class net.imglib2.iterator.OffsetableIntervalIterator
Adjust the offset and reset the iterator
setMin(long[]) - Method in class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
Adjust the offset and reset the iterator
setMinFadeOutDistance(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setMinMax(double, double) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
setOne() - Method in class net.imglib2.type.logic.BitType
 
setOne() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setOne() - Method in class net.imglib2.type.numeric.ARGBType
 
setOne() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setOne() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setOne() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
setOne() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setOne() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setOne() - Method in class net.imglib2.type.numeric.real.FloatType
 
setOne() - Method in interface net.imglib2.type.operators.SetOne
 
setOne() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
setOne() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setOne() - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
SetOne - Interface in net.imglib2.type.operators
 
setPlane(int, A) - Method in interface net.imglib2.img.basictypeaccess.PlanarAccess
 
setPlane(int, A) - Method in class net.imglib2.img.planar.PlanarImg
 
setPosition(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.position.transform.Floor
 
setPosition(double[]) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(double[]) - Method in class net.imglib2.position.transform.Round
 
setPosition(double[]) - Method in class net.imglib2.RealPoint
 
setPosition(double[]) - Method in interface net.imglib2.RealPositionable
Set the position of the element.
setPosition(double, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.position.transform.Floor
 
setPosition(double, int) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(double, int) - Method in class net.imglib2.position.transform.Round
 
setPosition(double, int) - Method in class net.imglib2.RealPoint
 
setPosition(double, int) - Method in interface net.imglib2.RealPositionable
Set the position of the element for one dimension.
setPosition(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.position.transform.Floor
 
setPosition(float[]) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(float[]) - Method in class net.imglib2.position.transform.Round
 
setPosition(float[]) - Method in class net.imglib2.RealPoint
 
setPosition(float[]) - Method in interface net.imglib2.RealPositionable
Set the position of the element.
setPosition(float, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.position.transform.Floor
 
setPosition(float, int) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(float, int) - Method in class net.imglib2.position.transform.Round
 
setPosition(float, int) - Method in class net.imglib2.RealPoint
 
setPosition(float, int) - Method in interface net.imglib2.RealPositionable
Set the position of the element for one dimension.
setPosition(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.Point
 
setPosition(int[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(int[]) - Method in interface net.imglib2.Positionable
Set the position of the element.
setPosition(int[]) - Method in class net.imglib2.RealPoint
 
setPosition(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(int, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.Point
 
setPosition(int, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(int, int) - Method in interface net.imglib2.Positionable
Set the position of the element for one dimension.
setPosition(int, int) - Method in class net.imglib2.RealPoint
 
setPosition(int, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(int, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(int, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(int, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.Point
 
setPosition(long[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(long[]) - Method in interface net.imglib2.Positionable
Set the position of the element.
setPosition(long[]) - Method in class net.imglib2.RealPoint
 
setPosition(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.Point
 
setPosition(long, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(long, int) - Method in interface net.imglib2.Positionable
Set the position of the element for one dimension.
setPosition(long, int) - Method in class net.imglib2.RealPoint
 
setPosition(long, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(long, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(long, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(long, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(Localizable) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.Point
 
setPosition(Localizable) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(Localizable) - Method in interface net.imglib2.Positionable
Place the element at the same location as a given Localizable
setPosition(Localizable) - Method in class net.imglib2.RealPoint
 
setPosition(Localizable) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(Localizable) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(Localizable) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(Localizable) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.Floor
 
setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.Round
 
setPosition(RealLocalizable) - Method in class net.imglib2.RealPoint
 
setPosition(RealLocalizable) - Method in interface net.imglib2.RealPositionable
Place the element at the same location as a given RealLocalizable
setPositionDim0(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
Sets the ArrayRandomAccess to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction)
setPositionDim0(long) - Method in class net.imglib2.img.array.ArrayRandomAccess
Sets the ArrayRandomAccess to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction)
setR(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setR(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setR(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setRandom(Random) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
setRandomAccess(RandomAccess<T>) - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
setRandomAccess(RandomAccess<T>) - Method in interface net.imglib2.display.projector.sampler.ProjectedSampler
 
setRandomAccess(RandomAccess<T>) - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setReal(double) - Method in interface net.imglib2.type.numeric.ComplexType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setReal(double) - Method in class net.imglib2.type.numeric.real.DoubleType
 
setReal(double) - Method in class net.imglib2.type.numeric.real.FloatType
 
setReal(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setReal(float) - Method in interface net.imglib2.type.numeric.ComplexType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setReal(float) - Method in class net.imglib2.type.numeric.real.DoubleType
 
setReal(float) - Method in class net.imglib2.type.numeric.real.FloatType
 
setReal(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setRow(int, double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set row r of B to vector a.
setShort(short) - Method in class net.imglib2.type.numeric.integer.GenericShortType
Sets the primitive short value that is used to store this type.
setTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
setTranslation(long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
setTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
setValid(boolean) - Method in class net.imglib2.Volatile
 
setValue(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteType
Deprecated.
setValue(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
Deprecated.
setValue(int, boolean) - Method in class net.imglib2.img.sparse.BooleanNtree
 
setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
setValue(int, byte) - Method in interface net.imglib2.img.basictypeaccess.ByteAccess
 
setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
setValue(int, byte) - Method in class net.imglib2.img.sparse.ByteNtree
 
setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
setValue(int, char) - Method in interface net.imglib2.img.basictypeaccess.CharAccess
 
setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
setValue(int, char) - Method in class net.imglib2.img.sparse.CharNtree
 
setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
setValue(int, double) - Method in interface net.imglib2.img.basictypeaccess.DoubleAccess
 
setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
setValue(int, double) - Method in class net.imglib2.img.sparse.DoubleNtree
 
setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
setValue(int, float) - Method in interface net.imglib2.img.basictypeaccess.FloatAccess
 
setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
setValue(int, float) - Method in class net.imglib2.img.sparse.FloatNtree
 
setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
setValue(int, int) - Method in interface net.imglib2.img.basictypeaccess.IntAccess
 
setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
setValue(int, int) - Method in class net.imglib2.img.sparse.IntNtree
 
setValue(int, int) - Method in class net.imglib2.img.sparse.NtreeIntAccess
 
setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
setValue(int, long) - Method in interface net.imglib2.img.basictypeaccess.LongAccess
 
setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
setValue(int, long) - Method in class net.imglib2.img.sparse.LongNtree
 
setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
setValue(int, short) - Method in interface net.imglib2.img.basictypeaccess.ShortAccess
 
setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
setValue(int, short) - Method in class net.imglib2.img.sparse.ShortNtree
 
setValue(long) - Method in class net.imglib2.type.numeric.integer.GenericLongType
Deprecated.
setValue(short) - Method in class net.imglib2.type.numeric.integer.GenericShortType
Deprecated.
setValue(T) - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
setValue(T) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
setZero() - Method in class net.imglib2.type.logic.BitType
 
setZero() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setZero() - Method in class net.imglib2.type.numeric.ARGBType
 
setZero() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setZero() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setZero() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
setZero() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setZero() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setZero() - Method in class net.imglib2.type.numeric.real.FloatType
 
setZero() - Method in interface net.imglib2.type.operators.SetZero
 
setZero() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
setZero() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setZero() - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
SetZero - Interface in net.imglib2.type.operators
 
shear(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Positive shear transform of a RandomAccessible using ShearTransform, i.e.
shear(RandomAccessible<T>, Interval, int, int) - Static method in class net.imglib2.view.Views
Positive shear transform of a RandomAccessible using ShearTransform, i.e.
shearDimension - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
ShearTransform - Class in net.imglib2.transform.integer.shear
Forward implementation of the most simple case of a shear transform: coordinate[ shearDimension ] += coordinate[ referenceDimension ]
ShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.ShearTransform
 
ShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.ShearTransform
Protected constructor for passing an inverse to avoid construction of unnecessary objects.
ShortAccess - Interface in net.imglib2.img.basictypeaccess
TODO
ShortArray - Class in net.imglib2.img.basictypeaccess.array
 
ShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ShortArray
 
ShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ShortArray
 
ShortAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ShortType, ShortArray>.
ShortAWTScreenImage(ArrayImg<ShortType, ShortArray>) - Constructor for class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
ShortAWTScreenImage(ShortType, ShortArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
ShortNtree - Class in net.imglib2.img.sparse
 
ShortNtree(long[], long[], short) - Constructor for class net.imglib2.img.sparse.ShortNtree
 
ShortNtree(Ntree<Short>, long[]) - Constructor for class net.imglib2.img.sparse.ShortNtree
 
shorts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
shorts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
shorts(short[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ShortType, ShortArray> reusing a passed short[] array.
shorts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ShortType, ShortAccess> using a ShortAccess passed as argument.
ShortType - Class in net.imglib2.type.numeric.integer
TODO
ShortType() - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortType(short) - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
SignedByteDataBuffer - Class in net.imglib2.display.awt
DataBuffer that stores signed bytes.
SignedByteDataBuffer(byte[][], int) - Constructor for class net.imglib2.display.awt.SignedByteDataBuffer
Construct a new buffer of signed bytes using the given 2D byte array.
SignedByteDataBuffer(byte[], int) - Constructor for class net.imglib2.display.awt.SignedByteDataBuffer
Construct a new buffer of signed bytes using the given byte array.
SignedShortDataBuffer - Class in net.imglib2.display.awt
DataBuffer that stores signed shorts.
SignedShortDataBuffer(int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(int, int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[][], int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[][], int, int[]) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[], int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[], int, int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
simplifyTransforms() - Method in class net.imglib2.view.TransformBuilder
Simplify the TransformBuilder.transforms list.
SINGLE - Enum constant in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
 
SingleDimensionPermutationTransform - Class in net.imglib2.transform.integer.permutation
 
SingleDimensionPermutationTransform(int[], int, int, int) - Constructor for class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
size - Variable in class net.imglib2.img.array.AbstractArrayCursor
Size of this cursor
size - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Size of this cursor.
size - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
size - Variable in class net.imglib2.KDTree
the number of nodes in the tree.
size() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
size() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
size() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
size() - Method in class net.imglib2.histogram.Histogram1d
 
size() - Method in class net.imglib2.histogram.HistogramNd
 
size() - Method in class net.imglib2.img.AbstractImg
 
size() - Method in class net.imglib2.img.cell.Cell
 
size() - Method in interface net.imglib2.IterableRealInterval
Returns the number of elements in this Function.
size() - Method in class net.imglib2.KDTree
 
size() - Method in class net.imglib2.PointSampleList
 
size() - Method in class net.imglib2.RealPointSampleList
 
size() - Method in class net.imglib2.view.IntervalView
 
size() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
sliceIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
sliceIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
sliceIndex - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
sliceSteps - Variable in class net.imglib2.img.planar.PlanarImg
 
sliceSteps - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
Slicing - Interface in net.imglib2.transform.integer
TODO
SlicingCursor<T> - Class in net.imglib2.view.iteration
Wrap a cursor that runs on a hyperslice and apply coordinate transform on localize calls.
SlicingCursor(SlicingCursor<T>) - Constructor for class net.imglib2.view.iteration.SlicingCursor
 
SlicingRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Slicing transformToSource.
SlicingRandomAccess(SlicingRandomAccess<T>) - Constructor for class net.imglib2.view.SlicingRandomAccess
 
SlicingTransform - Class in net.imglib2.transform.integer
Map the components of the source vector to a slice of the target space, for instance transform (x,y) to (x,C,y) where C is a constant.
SlicingTransform(int, int) - Constructor for class net.imglib2.transform.integer.SlicingTransform
 
smallestContainingInterval(RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the smallest Interval containing the specified RealInterval.
source - Variable in class net.imglib2.converter.AbstractConvertedCursor
 
source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccess
 
source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
source - Variable in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
source - Variable in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
source - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
source - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
source - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
source - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
source - Variable in class net.imglib2.interpolation.Interpolant
 
source - Variable in class net.imglib2.view.composite.CompositeView
 
source - Variable in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
source - Variable in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
source - Variable in class net.imglib2.view.HyperSlice
 
source - Variable in class net.imglib2.view.HyperSlicesView
 
source - Variable in class net.imglib2.view.IntervalView
The source RandomAccessible.
source - Variable in class net.imglib2.view.MixedTransformView
 
source - Variable in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
source - Variable in class net.imglib2.view.SubsampleView
 
source - Variable in class net.imglib2.view.TransformBuilder
Provides the untransformed random access.
source - Variable in class net.imglib2.view.TransformView
 
sourceA - Variable in class net.imglib2.view.RandomAccessiblePair
 
sourceAccess - Variable in class net.imglib2.view.composite.AbstractComposite
 
sourceAccess - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
sourceAccess - Variable in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
sourceAccess - Variable in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
sourceB - Variable in class net.imglib2.view.RandomAccessiblePair
 
sourceInterval - Variable in class net.imglib2.AbstractWrappedRealInterval
 
sourceRandomAccess - Variable in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
splitDimension - Variable in class net.imglib2.KDTreeNode
dimension along which this node divides the space.
squareDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
squareDistance(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the squared length of (a - b).
squareDistance(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.
squareDistance(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.
squareDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
squareLength(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the squared length of a.
squDistanceTo(double[]) - Method in class net.imglib2.KDTreeNode
Compute the squared distance from p to this node.
squDistanceTo(float[]) - Method in class net.imglib2.KDTreeNode
Compute the squared distance from p to this node.
squDistanceTo(RealLocalizable) - Method in class net.imglib2.KDTreeNode
Compute the squared distance from p to this node.
stack(List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stack(RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stack(StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stack(StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
StackView<T> - Class in net.imglib2.view
A stack of n-dimensional RandomAccessibleIntervals, forming a (n+1)-dimensional RandomAccessibleInterval.
StackView(List<? extends RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.view.StackView
 
StackView(List<? extends RandomAccessibleInterval<T>>, StackView.StackAccessMode) - Constructor for class net.imglib2.view.StackView
 
StackView.DefaultRA<T> - Class in net.imglib2.view
StackView.MoveAllSlicesRA<T> - Class in net.imglib2.view
StackView.StackAccessMode - Enum in net.imglib2.view
Describes how a RandomAccess on the (n+1)-dimensional StackView maps position changes into position changes of the underlying n-dimensional RandomAccesses.
step - Variable in class net.imglib2.img.list.AbstractListImg
 
step - Variable in class net.imglib2.img.list.AbstractLongListImg
 
steps - Variable in class net.imglib2.img.cell.Cell
 
steps - Variable in class net.imglib2.iterator.IntervalIterator
 
steps - Variable in class net.imglib2.view.SubsampleView
 
sub(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
sub(BitType) - Method in class net.imglib2.type.logic.BitType
 
sub(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
sub(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
sub(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
sub(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
sub(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
sub(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
sub(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
sub(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
sub(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
sub(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
sub(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
sub(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
sub(T) - Method in interface net.imglib2.type.operators.Sub
 
sub(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
sub(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
Sub<T> - Interface in net.imglib2.type.operators
 
SubIntervalIterable<T> - Interface in net.imglib2.view.iteration
Implementing this interface enables the implementor to return optimized Cursors for certain Intervals
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.array.ArrayImg
Returns the iteration order given the interval.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.ImgView
 
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Returns the iteration order given the interval.
subIntervalIterationOrder(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Returns the iteration order given the interval.
subsample(RandomAccessible<T>, long) - Static method in class net.imglib2.view.Views
Sample only every stepth value of a source RandomAccessible.
subsample(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Sample only every stepdth value of a source RandomAccessible.
subsample(RandomAccessibleInterval<T>, long) - Static method in class net.imglib2.view.Views
Sample only every stepth value of a source RandomAccessibleInterval.
subsample(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Sample only every stepdth value of a source RandomAccessibleInterval.
SubsampleIntervalView<T> - Class in net.imglib2.view
SubsampleIntervalView is a view that provides access to only every sdth value of a source RandomAccessibleInterval.
SubsampleIntervalView(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.view.SubsampleIntervalView
 
SubsampleIntervalView(RandomAccessibleInterval<T>, long...) - Constructor for class net.imglib2.view.SubsampleIntervalView
 
SubsampleRandomAccess() - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
SubsampleRandomAccess(Interval) - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
SubsampleRandomAccess(RandomAccess<T>) - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
SubsampleView<T> - Class in net.imglib2.view
SubsampleView is a view that provides access to only every sdth value of a source RandomAccessible.
SubsampleView(RandomAccessible<T>, long) - Constructor for class net.imglib2.view.SubsampleView
 
SubsampleView(RandomAccessible<T>, long...) - Constructor for class net.imglib2.view.SubsampleView
 
SubsampleView.SubsampleRandomAccess - Class in net.imglib2.view
 
subtract(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a - b.
subtractData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Uncounts some original data contained in a given iterable collection.
subtractData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Uncounts some original data contained in a given iterable collection.
subtractData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Uncounts some original data contained in a given iterable collection.
sums - Variable in class net.imglib2.util.RealSum
 
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Determine whether a Cursor can be created that iterates the given Interval.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.ImgView
 
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Determine whether a Cursor can be created that iterates the given Interval.
supportsOptimizedCursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Determine whether a Cursor can be created that iterates the given Interval.
switchRealComplex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 

T

t - Variable in class net.imglib2.Volatile
 
T - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
target - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
target - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
target - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
target - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
target - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
 
tmp - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
tmp - Variable in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
toARGBInt() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
Create and integer packed representation of this ARGB value.
toLongArray() - Method in class net.imglib2.histogram.Histogram1d
Returns a bare long[] histogram with the same bin counts as this histogram.
toString() - Method in class net.imglib2.AbstractCursor
 
toString() - Method in class net.imglib2.AbstractCursorInt
 
toString() - Method in class net.imglib2.img.AbstractImg
 
toString() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
toString() - Method in class net.imglib2.img.cell.CellCursor
 
toString() - Method in class net.imglib2.img.cell.CellGrid
 
toString() - Method in class net.imglib2.img.planar.PlanarCursor
 
toString() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
toString() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
toString() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
toString() - Method in class net.imglib2.iterator.IntervalIterator
 
toString() - Method in class net.imglib2.KDTree.SamplerNode
 
toString() - Method in class net.imglib2.KDTree
 
toString() - Method in class net.imglib2.KDTree.ValueNode
 
toString() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
toString() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
toString() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
toString() - Method in class net.imglib2.Point
 
toString() - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
toString() - Method in class net.imglib2.RealPoint
 
toString() - Method in class net.imglib2.type.AbstractNativeType
 
toString() - Method in class net.imglib2.type.label.BasePairBitType
 
toString() - Method in class net.imglib2.type.label.BasePairCharType
 
toString() - Method in class net.imglib2.type.logic.BitType
 
toString() - Method in class net.imglib2.type.numeric.ARGBType
 
toString() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
toString() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
toString() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
toString() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
toString() - Method in class net.imglib2.view.MixedTransformView
 
toString(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(double[][], String) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(double[], String) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(KDTreeNode<T>, String) - Method in class net.imglib2.KDTree
 
totalCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the total count of all values observed; both within and without the entire distribution.
totalCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the total count of all values observed; both within and without the entire distribution.
totalValues() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the total number of values counted by this distribution.
transform(BoundingBox) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
transform(BoundingBox) - Method in interface net.imglib2.transform.integer.BoundingBoxTransform
Return a transformed bounding box.
transform(BoundingBox) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
transform(BoundingBox) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
transform(T) - Method in interface net.imglib2.transform.Transformable
Generate a copy of the object in the transformed space.
Transform - Interface in net.imglib2.transform
Transformation from Zn to Zm.
Transformable<O,T> - Interface in net.imglib2.transform
A class is transformable if it can produce a copy of itself in the transformed space using the supplied transform.
TransformBuilder<T> - Class in net.imglib2.view
The "brain" of the Views framework.
TransformBuilder(Interval, RandomAccessible<T>) - Constructor for class net.imglib2.view.TransformBuilder
Create a new TransformBuilder.
TransformedRandomAccessible<T> - Interface in net.imglib2.view
A view of a RandomAccessible which is related by a coordinate Transform to its source.
TransformRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a generic Transform transformToSource.
TransformRandomAccess(TransformRandomAccess<T>) - Constructor for class net.imglib2.view.TransformRandomAccess
 
transforms - Variable in class net.imglib2.view.TransformBuilder
List of transforms that have to be applied when wrapping the TransformBuilder.source RandomAccess to obtain a RandomAccess in the target coordinate system.
transformToSource - Variable in class net.imglib2.view.MixedTransformView
 
transformToSource - Variable in class net.imglib2.view.TransformView
 
TransformView<T> - Class in net.imglib2.view
Wrap a source RandomAccessible which is related to this by a generic Transform transformToSource.
TransformView(RandomAccessible<T>, Transform) - Constructor for class net.imglib2.view.TransformView
 
translate(Interval, long, int) - Static method in class net.imglib2.util.Intervals
Translate an interval in one dimension.
translate(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Translate the source view by the given translation vector.
translate(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Translate the source view by the given translation vector.
translation - Variable in class net.imglib2.transform.integer.MixedTransform
translation is added to the target vector after applying permutation, projection, inversion operations.
translation - Variable in class net.imglib2.transform.integer.SlicingTransform
translation is added to the target vector after applying the permutation and project-up operations.
translation - Variable in class net.imglib2.transform.integer.TranslationTransform
target = source + translation.
Translation - Interface in net.imglib2.transform.integer
TODO
TranslationRandomAccess<T> - Class in net.imglib2.view
TODO
TranslationRandomAccess(TranslationRandomAccess<T>) - Constructor for class net.imglib2.view.TranslationRandomAccess
 
TranslationTransform - Class in net.imglib2.transform.integer
TODO
TranslationTransform(int) - Constructor for class net.imglib2.transform.integer.TranslationTransform
 
TranslationTransform(long[]) - Constructor for class net.imglib2.transform.integer.TranslationTransform
 
TranslationTransform.InverseTranslationTransform - Class in net.imglib2.transform.integer
 
tree - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
tree - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
tree - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
type - Variable in class net.imglib2.img.array.AbstractArrayCursor
An instance of T
type - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
An instance of T.
type - Variable in class net.imglib2.img.array.ArrayRandomAccess
 
type - Variable in class net.imglib2.img.cell.CellCursor
 
type - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
type - Variable in class net.imglib2.img.cell.CellRandomAccess
 
type - Variable in class net.imglib2.img.planar.PlanarCursor
 
type - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
type - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
Type<T> - Interface in net.imglib2.type
The Type interface is responsible for accessing and manipulating (pixel) values.
TypeIdentity<T> - Class in net.imglib2.converter
TODO
TypeIdentity() - Constructor for class net.imglib2.converter.TypeIdentity
 

U

U - Enum constant in enum net.imglib2.type.label.BasePairBitType.Base
 
union(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Compute the smallest interval that contains both input intervals.
union(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the smallest interval that contains both input intervals.
unshear(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.
unshear(RandomAccessible<T>, Interval, int, int) - Static method in class net.imglib2.view.Views
Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.
Unsigned128BitType - Class in net.imglib2.type.numeric.integer
A Type with a bit depth of 128.
Unsigned128BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(long, long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned12BitType - Class in net.imglib2.type.numeric.integer
A 12-bit Type whose data is stored in a LongAccess.
Unsigned12BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned12BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned12BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned12BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned2BitType - Class in net.imglib2.type.numeric.integer
A Type with a bit depth of 2.
Unsigned2BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned2BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned2BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned2BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned4BitType - Class in net.imglib2.type.numeric.integer
A Type with a bit depth of 4.
Unsigned4BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
Unsigned4BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
Unsigned4BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
Unsigned4BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
UnsignedByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<UnsignedByteType, ByteArray>.
UnsignedByteAWTScreenImage(ArrayImg<UnsignedByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
UnsignedByteAWTScreenImage(UnsignedByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
unsignedBytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedByteType, ByteArray> reusing a passed byte[] array.
unsignedBytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedBytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
unsignedBytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedByteType, ByteAccess> using a ByteAccess passed as argument.
UnsignedByteType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedByteType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedByteType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedIntAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ShortType, ShortArray>.
UnsignedIntAWTScreenImage(ArrayImg<UnsignedIntType, IntArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
UnsignedIntAWTScreenImage(UnsignedIntType, IntArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
UnsignedIntDataBuffer - Class in net.imglib2.display.awt
DataBuffer that stores unsigned ints.
UnsignedIntDataBuffer(int[][], int) - Constructor for class net.imglib2.display.awt.UnsignedIntDataBuffer
Construct a new buffer of unsigned ints using the given 2D int array.
UnsignedIntDataBuffer(int[], int) - Constructor for class net.imglib2.display.awt.UnsignedIntDataBuffer
Construct a new buffer of unsigned ints using the given int array.
unsignedInts(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedIntType, IntArray> reusing a passed int[] array.
unsignedInts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedInts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
unsignedInts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedIntType, IntAccess> using a IntAccess passed as argument.
UnsignedIntType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedIntType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedIntType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedIntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedIntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
unsignedLongs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedLongs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedLongType, LongAccess> using a LongAccess passed as argument.
unsignedLongss(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedLongType, LongArray> reusing a passed long[] array.
UnsignedLongType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedLongType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedShortAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<UnsignedShortType, ShortArray>.
UnsignedShortAWTScreenImage(ArrayImg<UnsignedShortType, ShortArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
UnsignedShortAWTScreenImage(UnsignedShortType, ShortArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
unsignedShorts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedShorts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
unsignedShorts(short[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedShortType, ShortArray> reusing a passed short[] array.
unsignedShorts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedShortType, ShortAccess> using a ShortAccess passed as argument.
UnsignedShortType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedShortType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedShortType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedVariableBitLengthType - Class in net.imglib2.type.numeric.integer
A Type with arbitrary bit depth up to maximum 64 bits.
UnsignedVariableBitLengthType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
UnsignedVariableBitLengthType(long, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
UnsignedVariableBitLengthType(LongAccess, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
UnsignedVariableBitLengthType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
update(Object) - Method in class net.imglib2.img.array.ArrayImg
 
update(Object) - Method in class net.imglib2.img.cell.AbstractCellImg
 
update(Object) - Method in interface net.imglib2.img.NativeImg
called by type with cursor.
update(Object) - Method in class net.imglib2.img.planar.PlanarImg
 
update(Object) - Method in class net.imglib2.img.sparse.NtreeImg
 
updateContainer(Object) - Method in class net.imglib2.type.AbstractBitType
 
updateContainer(Object) - Method in class net.imglib2.type.label.BasePairCharType
 
updateContainer(Object) - Method in class net.imglib2.type.logic.BitType
 
updateContainer(Object) - Method in interface net.imglib2.type.NativeType
This method is used by an accessor (e.g., a Cursor) to request an update of the current data array.
updateContainer(Object) - Method in class net.imglib2.type.numeric.ARGBType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.real.DoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.real.FloatType
 
updateCurrentArrays() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Walk through composite[] and store the currently active converters and positions (in dimension CompositeXYProjector.dimIndex) to CompositeXYProjector.currentConverters and CompositeXYProjector.currentPositions.
updateCurrentArrays() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Walk through composite[] and store the currently active converters and positions (in dimension CompositeXYRandomAccessibleProjector.dimIndex) to CompositeXYRandomAccessibleProjector.currentConverters and CompositeXYRandomAccessibleProjector.currentPositions.
updateIndex(int) - Method in class net.imglib2.type.AbstractBitType
 
updateIndex(int) - Method in class net.imglib2.type.AbstractNativeType
 
updateIndex(int) - Method in class net.imglib2.type.logic.BitType
 
updateIndex(int) - Method in interface net.imglib2.type.NativeType
Set the index into the current data array.
updateIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
 
updateIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
 
upperTailCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values in the upper tail bin (if any).
upperTailCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in all upper tail bins (if any).
upperTailCount(int) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in the upper tail bin (if any) for the given dimension.
Util - Class in net.imglib2.util
TODO
Util() - Constructor for class net.imglib2.util.Util
 

V

valid - Variable in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
 
valid - Variable in class net.imglib2.Volatile
 
value - Variable in class net.imglib2.KDTree.ValueNode
 
value - Variable in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
value - Variable in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
value - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
valueCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of all values in the middle of the distribution.
valueCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the middle of the distribution.
valueCount(int) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the middle of the distribution for a given dimension.
valueEquals(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
valueEquals(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
valueEquals(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
valueEquals(BitType) - Method in class net.imglib2.type.logic.BitType
 
valueEquals(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
valueEquals(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
valueEquals(ComplexDoubleType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
valueEquals(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
valueEquals(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
valueEquals(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
Default test at long precision.
valueEquals(DoubleType) - Method in class net.imglib2.type.numeric.real.DoubleType
 
valueEquals(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
Default test at long precision.
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
valueEquals(T) - Method in interface net.imglib2.type.operators.ValueEquals
 
valueEquals(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
valueEquals(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
ValueEquals<T> - Interface in net.imglib2.type.operators
Tests equivalency of values.
ValueNode(KDTree.ValueNode<T>) - Constructor for class net.imglib2.KDTree.ValueNode
 
ValueNode(T, RealLocalizable, int, KDTree.ValueNode<T>, KDTree.ValueNode<T>) - Constructor for class net.imglib2.KDTree.ValueNode
 
valueOf(String) - Static method in enum net.imglib2.converter.ChannelARGBConverter.Channel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.type.label.BasePairBitType.Base
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.view.StackView.StackAccessMode
Returns the enum constant of this type with the specified name.
ValuePair<A,B> - Class in net.imglib2.util
TODO
ValuePair(A, B) - Constructor for class net.imglib2.util.ValuePair
 
values - Variable in class net.imglib2.display.AbstractArrayColorTable
Actual color table values.
values() - Static method in enum net.imglib2.converter.ChannelARGBConverter.Channel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.type.label.BasePairBitType.Base
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.view.StackView.StackAccessMode
Returns an array containing the constants of this enum type, in the order they are declared.
valueToBin(int, double, double, double) - Static method in class net.imglib2.util.Binning
Convert value to bin number.
verifyDimensions(int[]) - Static method in class net.imglib2.img.cell.CellImgFactory
Verify that dimensions is not null or empty, and that no dimension is less than 1.
verifyDimensions(long[]) - Static method in class net.imglib2.img.cell.CellImgFactory
Verify that dimensions is not null or empty, and that no dimension is less than 1.
verifyDimensions(List<L>, int) - Static method in class net.imglib2.KDTree
Check whether all positions in the positions list have dimension n.
View - Interface in net.imglib2
An interface which marks an object that is a lightweight wrapper or "view" around actual data.
Views - Class in net.imglib2.view
Create light-weight views into RandomAccessibles.
Views() - Constructor for class net.imglib2.view.Views
 
visit(RandomAccessible<T>) - Method in class net.imglib2.view.TransformBuilder
Visit a RandomAccessible (while traversing the view hierarchy).
visitExtended(ExtendedRandomAccessibleInterval<T, ?>) - Method in class net.imglib2.view.TransformBuilder
Visit a ExtendedRandomAccessibleInterval (while traversing the view hierarchy).
visitTransformed(TransformedRandomAccessible<T>) - Method in class net.imglib2.view.TransformBuilder
Visit a TransformedRandomAccessible (while traversing the view hierarchy).
Volatile<T> - Class in net.imglib2
Something volatile that has a value and is either VALID or INVALID.
Volatile(T) - Constructor for class net.imglib2.Volatile
 
Volatile(T, boolean) - Constructor for class net.imglib2.Volatile
 
Volatile2DRandomAccessibleProjector<T,A,B> - Class in net.imglib2.display.projector.volatiles
Volatile2DRandomAccessibleProjector(int, int, RandomAccessible<A>, RandomAccessibleInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
 
VolatileAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
A basic type access that can contain valid or invalid data.
VolatileArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.volatiles
An ArrayDataAccess that can contain valid or invalid data.
VolatileByteAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileByteArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
VolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
VolatileCharAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileCharArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
VolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
VolatileDoubleAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileDoubleArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
VolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
VolatileFloatAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileFloatArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
VolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
VolatileIntAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileIntArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
VolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
VolatileLongAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileLongArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
VolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
VolatileNumericType<T> - Class in net.imglib2.type.volatiles
Something volatile that has a value and is either VALID or INVALID.
VolatileNumericType(T) - Constructor for class net.imglib2.type.volatiles.VolatileNumericType
 
VolatileNumericType(T, boolean) - Constructor for class net.imglib2.type.volatiles.VolatileNumericType
 
VolatileRealType<T> - Class in net.imglib2.type.volatiles
Something volatile that has a value and is either VALID or INVALID.
VolatileRealType(T) - Constructor for class net.imglib2.type.volatiles.VolatileRealType
 
VolatileRealType(T, boolean) - Constructor for class net.imglib2.type.volatiles.VolatileRealType
 
VolatileRealTypeARGBConverter - Class in net.imglib2.converter
Converts a VolatileRealType to an ARGBType.
VolatileRealTypeARGBConverter() - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRealTypeARGBConverter(double, double) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRealTypeARGBConverter(double, double, ARGBType) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRealTypeARGBConverter(ARGBType) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileShortAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileShortArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 
VolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 

W

weights - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Weights for each pixel of the 2x2x...x2 hypercube of pixels participating in the interpolation.
width - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
wrap(double[]) - Static method in class net.imglib2.RealPoint
Create a point that stores its coordinates in the provided position array.
wrap(long[]) - Static method in class net.imglib2.FinalDimensions
Create a FinalDimensions object that stores its coordinates in the provided position array.
wrap(long[]) - Static method in class net.imglib2.Point
Create a point that stores its coordinates in the provided position array.
wrap(RandomAccessibleInterval<T>, ImgFactory<T>) - Static method in class net.imglib2.img.ImgView
Represent an arbitrary RandomAccessibleInterval as an Img
wrapGenericTransform(RandomAccessible<T>, Transform) - Method in class net.imglib2.view.TransformBuilder
 
wrapMixedTransform(RandomAccessible<T>, MixedTransform) - Method in class net.imglib2.view.TransformBuilder
 
WrappedImg<T> - Interface in net.imglib2.img
An object that wraps an Img somehow.
wrapSlicingTransform(RandomAccessible<T>, SlicingTransform) - Method in class net.imglib2.view.TransformBuilder
 
wrapTranslationTransform(RandomAccessible<T>, TranslationTransform) - Method in class net.imglib2.view.TransformBuilder
 
WriteConvertedCursor<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedCursor(Cursor<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedCursor
 
WriteConvertedIterableInterval<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedIterableInterval(IterableInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
WriteConvertedIterableRandomAccessibleInterval<A,B,S> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedIterableRandomAccessibleInterval(S, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
WriteConvertedRandomAccess<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRandomAccess(RandomAccess<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
WriteConvertedRandomAccessible<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRandomAccessible(RandomAccessible<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
WriteConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 

X

X - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
xor(boolean) - Method in class net.imglib2.type.logic.BoolType
 
xor(BitType) - Method in class net.imglib2.type.logic.BitType
 
xor(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
xor(T) - Method in interface net.imglib2.type.BooleanType
 

Y

Y - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 

Z

zero - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
zero - Variable in class net.imglib2.transform.integer.SlicingTransform
for each component of the target vector (before translation).
zeroMin(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Translate the source such that the upper left corner is at the origin
ZeroMinIntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual rectangular Interval whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ...
ZeroMinIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.ZeroMinIntervalIterator
 
ZeroMinIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.ZeroMinIntervalIterator
 
zeroMinN(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.composite.CompositeIntervalView
 
zeroMinPos - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Position relative to min, for internal calculations.
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