libpappsomspp
Library for mass spectrometry
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#include <bafasciifilereader.h>
Public Member Functions | |
BafAsciiFileReader (const QString &file_name) | |
virtual | ~BafAsciiFileReader () |
virtual MsDataFormat | getFileFormat () override |
virtual std::vector< MsRunIdCstSPtr > | getMsRunIds (const QString &run_prefix) override |
MsRunReader * | selectMsRunReader (const QString &file_name) const |
Private Member Functions | |
virtual bool | initialize (std::size_t &line_count) |
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MsFileReader (const QString &file_name) | |
virtual | ~MsFileReader () |
Additional Inherited Members | |
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QString | m_fileName |
MsDataFormat | m_fileFormat = MsDataFormat::unknown |
Definition at line 15 of file bafasciifilereader.h.
pappso::BafAsciiFileReader::BafAsciiFileReader | ( | const QString & | file_name | ) |
Definition at line 29 of file bafasciifilereader.cpp.
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virtual |
Definition at line 38 of file bafasciifilereader.cpp.
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 263 of file bafasciifilereader.cpp.
References pappso::MsFileReader::m_fileFormat.
Referenced by pappso::MsFileAccessor::getMsRunIds().
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 270 of file bafasciifilereader.cpp.
References pappso::Utils::getLexicalOrderedString(), pappso::MsRunId::getRunId(), initialize(), pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, pappso::MsRunId::setMsDataFormat(), pappso::MsRunId::setRunId(), pappso::MsRunId::setSampleName(), and pappso::MsRunId::setXmlId().
Referenced by pappso::MsFileAccessor::getMsRunIds().
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privatevirtual |
Definition at line 43 of file bafasciifilereader.cpp.
References pappso::brukerBafAscii, pappso::CHECKED_LINES_COUNT, pappso::Utils::endOfLineRegExp, line, pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, pappso::unknown, and pappso::Utils::unsignedDoubleNumberNoExponentialRegExp.
Referenced by getMsRunIds().
MsRunReader * pappso::BafAsciiFileReader::selectMsRunReader | ( | const QString & | file_name | ) | const |