fillSpectrumDescriptionWithSqlRecord(SpectrumDescr &spectrum_descr, QSqlQuery &qprecursor_list) | pappso::TimsDdaPrecursors | private |
getClosestPrecursorIdByMz(std::vector< std::vector< double > > ids, double mz_value) | pappso::TimsDdaPrecursors | |
getCombinedMs2ScansByPrecursorId(std::size_t precursor_id) | pappso::TimsDdaPrecursors | |
getMatchPrecursorIdByKo(std::vector< std::vector< double > > ids, double ko_value) | pappso::TimsDdaPrecursors | |
getMs2BuiltinCentroid() const | pappso::TimsDdaPrecursors | |
getPrecursorsByMzRtCharge(int charge, double mz_val, double rt_sec, double k0) | pappso::TimsDdaPrecursors | |
getQualifiedMs1MassSpectrumBySpectrumDescr(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, const SpectrumDescr &spectrum_descr, bool want_binary_data) | pappso::TimsDdaPrecursors | |
getQualifiedMs2MassSpectrumBySpectrumDescr(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, const SpectrumDescr &spectrum_descr, bool want_binary_data) | pappso::TimsDdaPrecursors | |
getSpectrumDescrListByFrameId(std::size_t frame_id) const | pappso::TimsDdaPrecursors | |
getSpectrumDescrWithPrecursorId(std::size_t precursor_id) const | pappso::TimsDdaPrecursors | |
getSpectrumDescrWithScanCoordinates(const std::pair< std::size_t, std::size_t > &scan_coordinates) | pappso::TimsDdaPrecursors | protected |
getTotalPrecursorCount() const | pappso::TimsDdaPrecursors | |
getXicCoordTimsFromPrecursorId(std::size_t precursor_id, PrecisionPtr precision_ptr) | pappso::TimsDdaPrecursors | |
m_builtinMs2Centroid | pappso::TimsDdaPrecursors | private |
m_isMonoThread | pappso::TimsDdaPrecursors | private |
m_mapXicCoordRecord | pappso::TimsDdaPrecursors | private |
m_mutex | pappso::TimsDdaPrecursors | private |
m_totalPrecursorCount | pappso::TimsDdaPrecursors | private |
mcsp_ms1Filter | pappso::TimsDdaPrecursors | private |
mcsp_ms2Filter | pappso::TimsDdaPrecursors | private |
mp_timsDataOrigin | pappso::TimsDdaPrecursors | private |
ms2ReaderGenerateMS1MS2Spectrum(const MsRunIdCstSPtr &msrun_id, std::vector< QualifiedMassSpectrum > &qualified_mass_spectrum_list, SpectrumCollectionHandlerInterface &handler, const SpectrumDescr &spectrum_descr, unsigned int ms_level) | pappso::TimsDdaPrecursors | private |
ms2ReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) | pappso::TimsDdaPrecursors | |
rawReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) | pappso::TimsDdaPrecursors | |
setMonoThread(bool is_mono_thread) | pappso::TimsDdaPrecursors | |
setMs1FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter) | pappso::TimsDdaPrecursors | |
setMs2BuiltinCentroid(bool centroid) | pappso::TimsDdaPrecursors | |
setMs2FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter) | pappso::TimsDdaPrecursors | |
TimsData | pappso::TimsDdaPrecursors | private |
TimsDdaPrecursors(QSqlQuery &query, TimsData *tims_data_origin) | pappso::TimsDdaPrecursors | |
~TimsDdaPrecursors() | pappso::TimsDdaPrecursors | |