libpappsomspp
Library for mass spectrometry
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grpgroupingmonitor.h
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1/*******************************************************************************
2 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3 *
4 * This file is part of the PAPPSOms++ library.
5 *
6 * PAPPSOms++ is free software: you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation, either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * PAPPSOms++ is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18 *
19 * Contributors:
20 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21 *implementation
22 ******************************************************************************/
23
24#pragma once
25
26#include <QTextStream>
27#include "../exportinmportconfig.h"
28
29namespace pappso
30{
31
33{
34 public:
36 virtual void startGrouping(std::size_t total_number_protein,
37 std::size_t total_number_peptide) = 0;
38 virtual void groupingProtein() = 0;
40 std::size_t total_number_group) = 0;
42 std::size_t total_number_group) = 0;
44 virtual void startNumberingAllGroups(std::size_t total_number_group) = 0;
45 virtual void stopGrouping() = 0;
46};
47
49{
50 private:
51 QTextStream *mp_outStream;
54 std::size_t m_currentProtein;
55
56 public:
58 virtual ~GrpGroupingMonitor();
59 virtual void startGrouping(std::size_t total_number_protein,
60 std::size_t total_number_peptide);
61 virtual void groupingProtein();
62 virtual void startRemovingNonInformativeSubGroupsInAllGroups(
63 std::size_t total_number_group);
64 virtual void stopRemovingNonInformativeSubGroupsInAllGroups(
65 std::size_t total_number_group);
66 virtual void removingNonInformativeSubGroupsInGroup();
67 virtual void startNumberingAllGroups(std::size_t total_number_group);
68 virtual void stopGrouping();
69};
70
71} // namespace pappso
virtual void removingNonInformativeSubGroupsInGroup()=0
virtual void startNumberingAllGroups(std::size_t total_number_group)=0
virtual void startRemovingNonInformativeSubGroupsInAllGroups(std::size_t total_number_group)=0
virtual void startGrouping(std::size_t total_number_protein, std::size_t total_number_peptide)=0
virtual void stopRemovingNonInformativeSubGroupsInAllGroups(std::size_t total_number_group)=0
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39