libpappsomspp
Library for mass spectrometry
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pappso::TimsFrameBase Member List

This is the complete list of members for pappso::TimsFrameBase, including all inherited members.

checkScanNum(std::size_t scanNum) constpappso::TimsFrameBase
combineScansInTofIndexIntensityMap(TimsDataFastMap &tof_index_intensity_map, std::size_t scan_index_begin, std::size_t scan_index_end) constpappso::TimsFrameBasevirtual
combineScansInTofIndexIntensityMap(TimsDataFastMap &tof_index_intensity_map, std::size_t scan_index_begin, std::size_t scan_index_end, quint32 tof_index_begin, quint32 tof_index_end) constpappso::TimsFrameBasevirtual
combineScansToTraceWithDowngradedMzResolution(std::size_t tof_index_merge_window, std::size_t scanIndexBegin, std::size_t scanIndexEnd, quint32 &minimum_tof_index_out, quint32 &maximum_tof_index_out) constpappso::TimsFrameBasevirtual
combineScansToTraceWithDowngradedMzResolution2(std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, std::size_t mobility_scan_begin, std::size_t mobility_scan_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) constpappso::TimsFrameBasevirtual
cumulateScanIntensities(std::size_t scan_index) constpappso::TimsFrameBasevirtual
cumulateScanRangeIntensities(std::size_t scan_index_begin, std::size_t scan_index_end) constpappso::TimsFrameBasevirtual
cumulateScansToTrace(std::size_t scanIndexBegin, std::size_t scanIndexEnd) constpappso::TimsFrameBasevirtual
downgradeResolutionOfTofIndexIntensityPairList(std::size_t tof_index_merge_window, std::vector< TofIndexIntensityPair > &spectrum) constpappso::TimsFrameBaseprotectedvirtual
getDriftTimeInMilliseconds(std::size_t scan_index) constpappso::TimsFrameBase
getId() constpappso::TimsFrameBase
getIonMobilityTraceByTofIndexRange(std::size_t tof_index_begin, std::size_t tof_index_end, XicExtractMethod method, std::size_t scan_index_begin, std::size_t scan_index_end) constpappso::TimsFrameBasevirtual
getMassSpectrumCstSPtr(std::size_t scan_index) const finalpappso::TimsFrameBasevirtual
getMassSpectrumSPtr(std::size_t scan_index) constpappso::TimsFrameBasevirtual
getMaximumRawMassIndex() constpappso::TimsFrameBasevirtual
getMobilityScan(std::size_t scan_index, std::size_t tof_index_merge_window, double mz_range_begin, double mz_range_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) constpappso::TimsFrameBasevirtual
getMsLevel() constpappso::TimsFrameBase
getMzCalibrationInterfaceSPtr() const finalpappso::TimsFrameBasevirtual
getOneOverK0Transformation(std::size_t scan_index) constpappso::TimsFrameBase
getRtInSeconds() constpappso::TimsFrameBase
getScanIndexFromOneOverK0(double one_over_k0) constpappso::TimsFrameBase
getScanIntensityList(std::size_t scan_index) constpappso::TimsFrameBasevirtual
getScanPeakCount(std::size_t scanIndex) constpappso::TimsFrameBasevirtual
getScanTofIndexList(std::size_t scan_index) constpappso::TimsFrameBasevirtual
getTotalNumberOfScans() constpappso::TimsFrameBasevirtual
getTraceFromTofIndexIntensityMap(TimsDataFastMap &accumulated_scans) constpappso::TimsFrameBase
getVoltageTransformation(std::size_t scanNum) constpappso::TimsFrameBase
hasSameCalibrationData(const TimsFrameBase &other) constpappso::TimsFrameBasevirtual
m_acqDurationInMillisecondspappso::TimsFrameBaseprotected
m_frameIdpappso::TimsFrameBaseprotected
m_msMsTypepappso::TimsFrameBaseprotected
m_rtInSecondspappso::TimsFrameBaseprotected
m_scanCountpappso::TimsFrameBaseprotected
m_timsC6pappso::TimsFrameBaseprotected
m_timsC7pappso::TimsFrameBaseprotected
m_timsDvStartpappso::TimsFrameBaseprotected
m_timsNdelaypappso::TimsFrameBaseprotected
m_timsSlopepappso::TimsFrameBaseprotected
m_timsTtranspappso::TimsFrameBaseprotected
m_timsVmaxpappso::TimsFrameBaseprotected
m_timsVminpappso::TimsFrameBaseprotected
msp_mzCalibrationpappso::TimsFrameBaseprotected
setAcqDurationInMilliseconds(double acquisition_duration_ms)pappso::TimsFrameBase
setMsMsType(quint8 type)pappso::TimsFrameBase
setMzCalibration(double T1_frame, double T2_frame, double digitizerTimebase, double digitizerDelay, double C0, double C1, double C2, double C3, double C4, double T1_ref, double T2_ref, double dC1, double dC2)pappso::TimsFrameBase
setMzCalibrationInterfaceSPtr(MzCalibrationInterfaceSPtr mzCalibration)pappso::TimsFrameBase
setRtInSeconds(double time)pappso::TimsFrameBase
setTimsCalibration(int tims_model_type, double C0, double C1, double C2, double C3, double C4, double C5, double C6, double C7, double C8, double C9)pappso::TimsFrameBase
TimsFrameBase(std::size_t frameId, quint32 scanCount)pappso::TimsFrameBase
TimsFrameBase(const TimsFrameBase &other)pappso::TimsFrameBase
~TimsFrameBase()pappso::TimsFrameBasevirtual