32#include <QXmlStreamWriter>
33#include "../../types.h"
34#include "../../psm/deepprot/deepprotenum.h"
35#include "../../amino_acid/aamodification.h"
36#include "../../protein/protein.h"
37#include "../../exportinmportconfig.h"
59 void writeDBSequence(
const QString &
id,
60 const QString &db_ref_id,
64 void writeDBSequence(
const QString &
id,
65 const QString &db_ref_id,
66 const QString &accession,
67 const QString &description,
68 const QString &sequence,
71 void writeStartMzIdentMlDocument(
const QString &
id,
const QString &version);
79 void writeCvParam(
const QString &cv_ref,
80 const QString &accession,
82 const QString &value);
83 void writeCvParamUo(
const QString &cv_ref,
84 const QString &accession,
87 const QString &unit_cv_ref,
88 const QString &unit_accession,
89 const QString &unit_name);
91 void writeCvParamUo(
const QString &cv_ref,
92 const QString &accession,
96 void writeUserParam(
const QString &name,
const QString &value);
97 void writeUserParam(
const QString &name,
double value);
103 static const QString toXmlMass(
double mass);
104 static const QString toXmlMassDelta(
double mass);
105 static const QString toXmlDouble(
double value);
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
DeepProtMatchType
definition of different class of PSMs used by DeepProt
DeepProtPeptideCandidateStatus
definition of different status for potential peptide candidates on the same spectrum