libpappsomspp
Library for mass spectrometry
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This is the complete list of members for pappso::ProteinIntegerCode, including all inherited members.
computePeptideCodeFragments(const AaStringCodec &codec, std::size_t fragment_size) const | pappso::ProteinIntegerCode | private |
convolution(const std::vector< uint32_t > &code_list_from_spectrum) const | pappso::ProteinIntegerCode | |
convolutionKernel(const std::vector< uint32_t > &spectrum_code_list, std::vector< std::uint8_t >::const_iterator it_aa, std::vector< std::uint32_t >::const_iterator it_couple, std::vector< std::uint32_t >::const_iterator it_trio, std::vector< std::uint32_t >::const_iterator it_quatro, std::vector< std::uint32_t >::const_iterator it_cinqo) const | pappso::ProteinIntegerCode | private |
getPeptideCodedFragment(std::size_t size) const | pappso::ProteinIntegerCode | |
getProteinSp() const | pappso::ProteinIntegerCode | |
getSeqAaCode() const | pappso::ProteinIntegerCode | |
m_peptideCodedFragments | pappso::ProteinIntegerCode | private |
m_seqAaCode | pappso::ProteinIntegerCode | private |
match(const std::vector< uint32_t > &code_list) const | pappso::ProteinIntegerCode | |
msp_protein | pappso::ProteinIntegerCode | private |
ProteinIntegerCode(ProteinSp protein, const AaStringCodec &codec, std::size_t aa_str_max_size=5) | pappso::ProteinIntegerCode | |
ProteinIntegerCode(const ProteinIntegerCode &other) | pappso::ProteinIntegerCode | |
~ProteinIntegerCode() | pappso::ProteinIntegerCode | virtual |