sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-07.freexian.com
+==============================================================================+
| libpwizlite 3.0.8-1 (arm64) Sun, 17 Nov 2024 04:27:49 +0000 |
+==============================================================================+
Package: libpwizlite
Version: 3.0.8-1
Source Version: 3.0.8-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.ZCq5wZcCrh...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-50faqytm/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-50faqytm/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-50faqytm/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-50faqytm/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-50faqytm/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-50faqytm/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-50faqytm/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/libpwizlite-31idNM/resolver-5EMbQY' with '<<RESOLVERDIR>>'
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Get:1 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ InRelease
Ign:1 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ InRelease
Get:2 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ Release [606 B]
Get:2 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ Release [606 B]
Get:3 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ Release.gpg
Ign:3 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ Release.gpg
Get:4 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ Packages [9246 B]
Get:5 http://deb.debian.org/debian sid InRelease [202 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9952 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4907 kB]
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Calculating upgrade...
The following packages will be upgraded:
apt bsdextrautils bsdutils debianutils dpkg dpkg-dev libapt-pkg6.0t64
libaudit-common libaudit1 libblkid1 libbrotli1 libcap-ng0 libdpkg-perl
libglib2.0-0t64 libmarkdown2 libmount1 libpcre2-8-0 libseccomp2 libselinux1
libsemanage2 libsmartcols1 libsystemd0 libudev1 libuuid1 libxml2 login
login.defs mount passwd util-linux
30 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:1 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:2 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:3 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libsystemd0 arm64 257~rc2-3 [416 kB]
Get:6 file:/build/libpwizlite-31idNM/resolver-aPfWlT/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libudev1 arm64 257~rc2-3 [139 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-4 [243 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 login.defs all 1:4.16.0-5 [185 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 passwd arm64 1:4.16.0-5 [1210 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
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Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) over (2.12.7+dfsg+really2.9.14-0.1) ...
Setting up bsdextrautils (2.40.2-11) ...
Setting up login.defs (1:4.16.0-5) ...
Installing new version of config file /etc/login.defs ...
Setting up libbrotli1:arm64 (1.1.0-2+b6) ...
Setting up libglib2.0-0t64:arm64 (2.82.2-3) ...
No schema files found: doing nothing.
Setting up libdpkg-perl (1.22.12~1.gbp82cafd) ...
Setting up mount (2.40.2-11) ...
Setting up libsemanage2:arm64 (3.7-2+b1) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libmarkdown2:arm64 (2.2.7-2.1) ...
Setting up login (1:4.16.0-2+really2.40.2-11) ...
Setting up dpkg-dev (1.22.12~1.gbp82cafd) ...
Setting up passwd (1:4.16.0-5) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-50faqytm/libpwizlite_3.0.8-1.dsc exists in /tmp/debusine-fetch-exec-upload-50faqytm; copying to chroot
I: NOTICE: Log filtering will replace 'build/libpwizlite-31idNM/libpwizlite-3.0.8' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libpwizlite-31idNM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev, build-essential, fakeroot
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [804 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [836 B]
Fetched 2249 B in 0s (195 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-aPfWlT/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-aPfWlT/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-aPfWlT/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-aPfWlT/apt_archive ./ Release [606 B]
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Ign:3 file:/<<BUILDDIR>>/resolver-aPfWlT/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
comerr-dev cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
debhelper dh-autoreconf dh-exec dh-strip-nondeterminism docutils-common dwz
fakeroot g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers
icu-devtools krb5-multidev libaec-dev libaec0 libarchive13t64 libasan8
libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev
libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev
libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev
libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex1.83-dev
libboost-regex1.83.0 libboost-serialization1.83-dev
libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0
libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0
libboost1.83-dev libbrotli-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libcurl4-openssl-dev libcurl4t64 libdebhelper-perl libelf1t64
libevent-2.1-7t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgssrpc4t64 libhdf5-103-1t64
libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64
libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libicu-dev
libidn2-dev libisl23 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjsoncpp26 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev
libldap-dev liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-dev libnsl2
libp11-kit-dev libpkgconf3 libproc2-0 libpsl-dev libpython3-stdlib
libpython3.12-minimal libpython3.12-stdlib librhash1 librtmp-dev
libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev
libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libunbound8
libuv1t64 libzstd-dev linux-libc-dev m4 media-types nettle-dev pkgconf
pkgconf-bin po-debconf procps python3 python3-docutils python3-minimal
python3-roman python3.12 python3.12-minimal rpcsvc-proto sgml-base xml-core
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build doc-base cpp-doc gcc-14-locales cpp-14-doc
dh-make gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu krb5-doc lrzip libboost-doc libboost1.83-doc
libboost-container1.83-dev libboost-context1.83-dev
libboost-contract1.83-dev libboost-coroutine1.83-dev
libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-stacktrace1.83-dev
libboost-test1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev
libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev
libmpfrc++-dev libntl-dev libc-devtools glibc-doc libcurl4-doc libidn-dev
gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc
krb5-user libhdf5-doc icu-doc libnghttp2-doc p11-kit-doc libssl-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv docutils-doc
fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python3.12-venv python3.12-doc
binfmt-support sgml-base-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl libgpm2 libtasn1-doc libltdl-dev
libmail-sendmail-perl psmisc linux-sysctl-defaults libpaper-utils
python3-pil python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
comerr-dev cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
debhelper dh-autoreconf dh-exec dh-strip-nondeterminism docutils-common dwz
fakeroot g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers
icu-devtools krb5-multidev libaec-dev libaec0 libarchive13t64 libasan8
libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev
libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev
libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev
libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev
libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex1.83-dev
libboost-regex1.83.0 libboost-serialization1.83-dev
libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0
libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0
libboost1.83-dev libbrotli-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libcurl4-openssl-dev libcurl4t64 libdebhelper-perl libelf1t64
libevent-2.1-7t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgssrpc4t64 libhdf5-103-1t64
libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64
libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libicu-dev
libidn2-dev libisl23 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjsoncpp26 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev
libldap-dev liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-dev libnsl2
libp11-kit-dev libpkgconf3 libproc2-0 libpsl-dev libpython3-stdlib
libpython3.12-minimal libpython3.12-stdlib librhash1 librtmp-dev
libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev
libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libunbound8
libuv1t64 libzstd-dev linux-libc-dev m4 media-types nettle-dev pkgconf
pkgconf-bin po-debconf procps python3 python3-docutils python3-minimal
python3-roman python3.12 python3.12-minimal rpcsvc-proto
sbuild-build-depends-main-dummy sgml-base xml-core zlib1g-dev
0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded.
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After this operation, 648 MB of additional disk space will be used.
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Get:6 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2+b1 [125 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
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Get:20 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
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Get:24 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.7-1 [2454 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
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Get:37 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-8 [2579 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-8 [1161 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-8 [2386 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-8 [1039 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-8 [1442 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-8 [2365 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8 [17.7 MB]
Get:44 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-8 [519 kB]
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Get:47 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-8 [2267 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8 [10.1 MB]
Get:49 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-8 [20.2 kB]
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Get:51 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:52 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:53 http://deb.debian.org/debian sid/main arm64 cmake-data all 3.31.0-1 [2265 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB]
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Get:57 http://deb.debian.org/debian sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
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Get:59 http://deb.debian.org/debian sid/main arm64 cmake arm64 3.31.0-1 [9874 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
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Get:68 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
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Get:71 http://deb.debian.org/debian sid/main arm64 xml-core all 0.19 [20.1 kB]
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Get:73 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
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Get:80 http://deb.debian.org/debian sid/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB]
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Get:101 http://deb.debian.org/debian sid/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2+b1 [314 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB]
Get:103 http://deb.debian.org/debian sid/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2+b1 [335 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-3.2+b1 [251 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2+b1 [261 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B]
Get:107 http://deb.debian.org/debian sid/main arm64 libboost-thread1.83.0 arm64 1.83.0-3.2+b1 [266 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 libboost-thread1.83-dev arm64 1.83.0-3.2+b1 [276 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B]
Get:110 http://deb.debian.org/debian sid/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libunbound8 arm64 1.22.0-1 [553 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 libcurl4-openssl-dev arm64 8.11.0-1 [447 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 python3-roman all 4.2-1 [10.4 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Setting up libkrb5-dev:arm64 (1.21.3-3) ...
Setting up python3-roman (4.2-1) ...
Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libssh2-1-dev:arm64 (1.11.1-1) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-8) ...
Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ...
Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ...
Setting up libtool (2.4.7-8) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up libcurl4-openssl-dev:arm64 (8.11.0-1) ...
Setting up libhdf5-dev (1.10.10+repack-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
Setting up debhelper (13.20) ...
Setting up dh-exec (0.30+b1) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up docutils-common (0.21.2+dfsg-2) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.21.2+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.7-1
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: libpwizlite
Binary: libpwizlite-dev, libpwizlite3t64
Architecture: any
Version: 3.0.8-1
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Homepage: https://salsa.debian.org/debichem-team/libpwizlite
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/libpwizlite
Vcs-Git: https://salsa.debian.org/debichem-team/libpwizlite.git
Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev
Package-List:
libpwizlite-dev deb libdevel optional arch=any
libpwizlite3t64 deb libs optional arch=any
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hkQVR20RpOrLSx/eOAfjXUY9FlLxVzSTfcyJszOiqWAL0k/ijj9LS1mcnaXhMZ/T
mT+i2844A4aVRp5xBHE9L8vFpGJUMAUrH5w3yw/mChz6BJanaeAg31kKXMbk6ewU
W0FqbhNARiZfdgaZSL3lkcogLVGdQX6d2IaXty/nPW0vv+dwvT066ad2WoxgEc5+
n7TL+wPWGCo76GSRwamHkbcLClMk1gkxc4HzfCmib21KjVncy7+v4xQnUNsdYEaX
LEeWT8gKEH0T21p7KN+5jiJTBc1fISewWahoZwlE347YbcEtWnU=
=AESd
-----END PGP SIGNATURE-----
gpgv: Signature made Thu May 16 12:43:23 2024 UTC
gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.8-1.dsc: no acceptable signature found
dpkg-source: info: extracting libpwizlite in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libpwizlite_3.0.8.orig.tar.gz
dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package libpwizlite
dpkg-buildpackage: info: source version 3.0.8-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Filippo Rusconi <lopippo@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --build-system=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f debian/libpwizlite.3
rm -rf debian/includes
rm -rf obj-aarch64-linux-gnu
dh_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--build-system=cmake
dh_clean -O--build-system=cmake
debian/rules binary
dh binary --build-system=cmake
dh_update_autotools_config -O--build-system=cmake
dh_autoreconf -O--build-system=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DCMAKE_INSTALL_PREFIX="/usr" \
-DCMAKE_BUILD_TYPE=release
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release ..
-- The CXX compiler identification is GNU 14.2.0
-- The C compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMAKE_LIBRARY_ARCHITECTURE: aarch64-linux-gnu
-- Set CMAKE_INSTALL_PREFIX to /usr
-- Install directory prefix: /usr
-- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/aarch64-linux-gnu
-- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include
[1;31mConfiguring build for project libpwizlite[m
-- Set CMAKE_CXX_STANDARD to 17 (required)
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- Setting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
-- [1;32mSetting definition -Wextra.[m
-- [1;31mCMAKE_SOURCE_DIR: /<<PKGBUILDDIR>>[m
UNIX non APPLE environment
Please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1")
CMake Warning (dev) at CMakeStuff/toolchains/unix-toolchain.cmake:12 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:106 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams thread filesystem chrono
-- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.10")
-- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.10.10") found components: CXX
-- HDF5_CXX_LIBRARIES: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so
-- HDF5_CXX_INCLUDE_DIRS: /usr/include/hdf5/serial
-- [1;32mStarting configuration of libpwizlite[m
-- [1;33mThe build toolchain is: Linux
[m
-- CMAKE_CURRENT_BINARY_DIR: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
-- [1;33mCMAKE_BUILD_TYPE: release.[m
-- Adding subdirectory src for PROJECT: libpwizlite
-- [1;33mSetting -Wall.[m
-- Boost_LIBRARIES found 1_83
-- Boost_INCLUDES: /usr/include
-- Boost_LIB_DIRS: /usr/lib/aarch64-linux-gnu
STATUS: Now managing the CPack process
-- Configuring done (2.5s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3
sh debian/make-included-headers-hierarchy.sh
baseName: SAXParser.hpp
dirName: pwiz/utility/minimxml
'pwiz/utility/minimxml/SAXParser.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp'
baseName: XMLWriter.hpp
dirName: pwiz/utility/minimxml
'pwiz/utility/minimxml/XMLWriter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp'
baseName: MzMobilityWindow.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp'
baseName: Chemistry.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/Chemistry.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp'
baseName: ChemistryData.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/ChemistryData.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp'
baseName: IsotopeCalculator.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp'
baseName: MZTolerance.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/MZTolerance.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp'
baseName: IsotopeEnvelopeEstimator.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp'
baseName: IsotopeTable.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp'
baseName: Ion.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/Ion.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp'
baseName: SHA1.h
dirName: pwiz/utility/misc
'pwiz/utility/misc/SHA1.h' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h'
baseName: Base64.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Base64.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp'
baseName: Environment.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Environment.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp'
baseName: VendorReaderTestHarness.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp'
baseName: Image.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Image.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp'
baseName: unit.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/unit.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp'
baseName: BinaryData.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/BinaryData.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp'
baseName: virtual_map.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/virtual_map.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp'
baseName: DateTime.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/DateTime.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp'
baseName: Stream.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Stream.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp'
baseName: TabReader.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/TabReader.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp'
baseName: automation_vector.h
dirName: pwiz/utility/misc
'pwiz/utility/misc/automation_vector.h' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h'
baseName: IterationListener.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/IterationListener.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp'
baseName: Once.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Once.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp'
baseName: ClickwrapPrompter.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp'
baseName: Std.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Std.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp'
baseName: SHA1_ostream.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/SHA1_ostream.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp'
baseName: Container.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Container.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp'
baseName: Timer.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Timer.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp'
baseName: mru_list.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/mru_list.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp'
baseName: String.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/String.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/String.hpp'
baseName: almost_equal.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/almost_equal.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp'
baseName: SHA1Calculator.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/SHA1Calculator.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp'
baseName: Filesystem.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Filesystem.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp'
baseName: Exception.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Exception.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp'
baseName: cpp_cli_utilities.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp'
baseName: CharIndexedVector.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/CharIndexedVector.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp'
baseName: IntegerSet.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/IntegerSet.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp'
baseName: MSIHandler.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/MSIHandler.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp'
baseName: COMInitializer.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/COMInitializer.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp'
baseName: shared_map.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/shared_map.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp'
baseName: optimized_lexical_cast.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp'
baseName: Singleton.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Singleton.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp'
baseName: random_access_compressed_ifstream.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp'
baseName: Export.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Export.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp'
baseName: endian.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/endian.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp'
baseName: Stats.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/Stats.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp'
baseName: Types.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/Types.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/Types.hpp'
baseName: Parabola.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/Parabola.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp'
baseName: round.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/round.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/round.hpp'
baseName: qr.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/qr.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/qr.hpp'
baseName: HouseholderQR.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/HouseholderQR.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp'
baseName: LinearLeastSquares.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/LinearLeastSquares.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp'
baseName: erf.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/erf.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/erf.hpp'
baseName: MatrixInverse.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/MatrixInverse.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp'
baseName: OrderedPair.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/OrderedPair.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp'
baseName: MatchedFilter.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/MatchedFilter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp'
baseName: LinearSolver.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/LinearSolver.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp'
baseName: masscomparefunctors.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp'
baseName: determinebinwidth.hpp
dirName: pwiz/utility/findmf/base/resample/utilities
'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp'
baseName: determinebinwidth.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp'
baseName: breakspec.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp'
baseName: bin1d.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp'
baseName: gaussfilter.hpp
dirName: pwiz/utility/findmf/base/filter
'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp'
baseName: preparedata.hpp
dirName: pwiz/utility/findmf/base/filter/utilities
'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp'
baseName: gauss.hpp
dirName: pwiz/utility/findmf/base/filter/utilities
'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp'
baseName: filter.hpp
dirName: pwiz/utility/findmf/base/filter
'pwiz/utility/findmf/base/filter/filter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp'
baseName: base.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/base.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp'
baseName: interpolation.hpp
dirName: pwiz/utility/findmf/base/base/utilities
'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp'
baseName: base.hpp
dirName: pwiz/utility/findmf/base/base/utilities
'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp'
baseName: diff.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/diff.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp'
baseName: interpolate.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp'
baseName: copyif.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/copyif.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp'
baseName: constants.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/constants.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp'
baseName: scale.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/scale.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp'
baseName: SpectrumList_Demux.hpp
dirName: pwiz/analysis/spectrum_processing
'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp'
baseName: DemuxDataProcessingStrings.hpp
dirName: pwiz/analysis/demux
'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp'
baseName: Version.hpp
dirName: pwiz
'pwiz/Version.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/Version.hpp'
baseName: FrequencyData.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/FrequencyData.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp'
baseName: PeakData.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/PeakData.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp'
baseName: MinimumPepXML.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/MinimumPepXML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp'
baseName: CalibrationParameters.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/CalibrationParameters.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp'
baseName: FrequencyDataTestData.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp'
baseName: SampleDatum.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/SampleDatum.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp'
baseName: Unimod.hpp
dirName: pwiz/data/common
'pwiz/data/common/Unimod.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp'
baseName: CVTranslator.hpp
dirName: pwiz/data/common
'pwiz/data/common/CVTranslator.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp'
baseName: BinaryIndexStream.hpp
dirName: pwiz/data/common
'pwiz/data/common/BinaryIndexStream.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp'
baseName: Index.hpp
dirName: pwiz/data/common
'pwiz/data/common/Index.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/Index.hpp'
baseName: ParamTypes.hpp
dirName: pwiz/data/common
'pwiz/data/common/ParamTypes.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp'
baseName: diff_std.hpp
dirName: pwiz/data/common
'pwiz/data/common/diff_std.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp'
baseName: MemoryIndex.hpp
dirName: pwiz/data/common
'pwiz/data/common/MemoryIndex.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp'
baseName: cv.hpp
dirName: pwiz/data/common
'pwiz/data/common/cv.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/cv.hpp'
baseName: obo.hpp
dirName: pwiz/data/common
'pwiz/data/common/obo.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/common/obo.hpp'
baseName: examples.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/examples.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp'
baseName: Diff.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Diff.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp'
baseName: Serializer_mz5.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_mz5.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp'
baseName: SpectrumList_mzXML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp'
baseName: ChromatogramList_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp'
baseName: Serializer_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_mzML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp'
baseName: SpectrumListCache.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumListCache.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp'
baseName: SpectrumList_MGF.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp'
baseName: IO.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/IO.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp'
baseName: SpectrumIterator.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumIterator.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp'
baseName: Version.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Version.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp'
baseName: SHA1OutputObserver.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp'
baseName: SpectrumList_mz5.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp'
baseName: Connection_mzMLb.hpp
dirName: pwiz/data/msdata/mzmlb
'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp'
baseName: References.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/References.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/References.hpp'
baseName: SpectrumWorkerThreads.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp'
baseName: Serializer_MGF.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_MGF.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp'
baseName: MSDataFile.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSDataFile.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp'
baseName: SpectrumInfo.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumInfo.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp'
baseName: Index_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Index_mzML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp'
baseName: MemoryMRUCache.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp'
baseName: Serializer_MSn.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_MSn.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp'
baseName: SpectrumListBase.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumListBase.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp'
baseName: MSData.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSData.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp'
baseName: MSNumpress.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSNumpress.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp'
baseName: LegacyAdapter.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/LegacyAdapter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp'
baseName: SpectrumList_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp'
baseName: BinaryDataEncoder.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp'
baseName: RAMPAdapter.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/RAMPAdapter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp'
baseName: DefaultReaderList.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/DefaultReaderList.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp'
baseName: Reader.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Reader.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp'
baseName: ChromatogramListBase.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp'
baseName: MSDataMerger.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSDataMerger.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp'
baseName: Serializer_mzXML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp'
baseName: SpectrumList_BTDX.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp'
baseName: SpectrumListWrapper.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp'
baseName: TextWriter.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/TextWriter.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp'
baseName: ChromatogramList_mz5.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp'
baseName: SpectrumList_MSn.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp'
baseName: cenv.hpp
dirName: boost/nowide
'boost/nowide/cenv.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/cenv.hpp'
baseName: stackstring.hpp
dirName: boost/nowide
'boost/nowide/stackstring.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/stackstring.hpp'
baseName: config.hpp
dirName: boost/nowide
'boost/nowide/config.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/config.hpp'
baseName: cstdlib.hpp
dirName: boost/nowide
'boost/nowide/cstdlib.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/cstdlib.hpp'
baseName: iostream.hpp
dirName: boost/nowide
'boost/nowide/iostream.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/iostream.hpp'
baseName: windows.hpp
dirName: boost/nowide
'boost/nowide/windows.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/windows.hpp'
baseName: cstdio.hpp
dirName: boost/nowide
'boost/nowide/cstdio.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/cstdio.hpp'
baseName: args.hpp
dirName: boost/nowide
'boost/nowide/args.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/args.hpp'
baseName: system.hpp
dirName: boost/nowide
'boost/nowide/system.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/system.hpp'
baseName: fstream.hpp
dirName: boost/nowide
'boost/nowide/fstream.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/fstream.hpp'
baseName: filebuf.hpp
dirName: boost/nowide
'boost/nowide/filebuf.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/filebuf.hpp'
baseName: convert.hpp
dirName: boost/nowide
'boost/nowide/convert.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/nowide/convert.hpp'
baseName: thread_specific_singleton.hpp
dirName: boost/utility
'boost/utility/thread_specific_singleton.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp'
baseName: singleton.hpp
dirName: boost/utility
'boost/utility/singleton.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/utility/singleton.hpp'
baseName: singleton_manager.hpp
dirName: boost/utility/detail
'boost/utility/detail/singleton_manager.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp'
baseName: member_dereference.hpp
dirName: boost/utility/detail
'boost/utility/detail/member_dereference.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp'
baseName: restricted.hpp
dirName: boost/utility/detail
'boost/utility/detail/restricted.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/utility/detail/restricted.hpp'
baseName: mutexed_singleton.hpp
dirName: boost/utility
'boost/utility/mutexed_singleton.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp'
baseName: base64.hpp
dirName: boost/iostreams/filter
'boost/iostreams/filter/base64.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp'
baseName: arbitrary_positional_facade.hpp
dirName: boost/iostreams
'boost/iostreams/arbitrary_positional_facade.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp'
baseName: foreach_field.hpp
dirName: boost
'boost/foreach_field.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/foreach_field.hpp'
baseName: iterator.hpp
dirName: boost/enum
'boost/enum/iterator.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/enum/iterator.hpp'
baseName: base.hpp
dirName: boost/enum
'boost/enum/base.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/enum/base.hpp'
baseName: macros.hpp
dirName: boost/enum
'boost/enum/macros.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/enum/macros.hpp'
baseName: bitfield.hpp
dirName: boost/enum
'boost/enum/bitfield.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/enum/bitfield.hpp'
baseName: enum.hpp
dirName: boost
'boost/enum.hpp' -> '/<<PKGBUILDDIR>>/debian/includes/pwizlite/boost/enum.hpp'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -O--build-system=cmake
cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
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make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build
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make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o
[ 8%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o
[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o
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[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o
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[ 9%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/cv.cpp
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/cv.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:27:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:27:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter ‘config’ [-Wunused-parameter]
40 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter ‘config’ [-Wunused-parameter]
88 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter ‘config’ [-Wunused-parameter]
124 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/cv.cpp:34:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/cv.cpp:34:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter ‘key’ [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter ‘value’ [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter ‘cvid’ [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp: In function ‘bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter ‘key’ [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter ‘value’ [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter ‘cvid’ [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/common/cv.cpp:26735:
/<<PKGBUILDDIR>>/src/pwiz/data/common/cv.inl: In function ‘const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
103 | for (int o=0;o<oboPrefixesSize_;++o)
| ~^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/common/cv.cpp:26735:
/<<PKGBUILDDIR>>/src/pwiz/data/common/cv.inl: In function ‘const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
103 | for (int o=0;o<oboPrefixesSize_;++o)
| ~^~~~~~~~~~~~~~~~~
[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp
[ 12%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.cpp
[ 13%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp
[ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.cpp
[ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp
[ 17%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
114 | } else if (init == mask) {
| ~~~~~^~~~~~~
In file included from /usr/include/c++/14/iostream:41,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:27:
In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]’,
inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:403:33:
/usr/include/c++/14/ostream:210:25: warning: ‘extrapol’ may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: ‘extrapol’ was declared here
346 | long long extrapol;
| ^~~~~~~~
In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]’,
inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:404:26:
/usr/include/c++/14/ostream:210:25: warning: ‘y’ may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: ‘y’ was declared here
347 | long long y;
| ^
[ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.hpp:30,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter ‘config’ [-Wunused-parameter]
40 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter ‘config’ [-Wunused-parameter]
88 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp: In function ‘void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter ‘config’ [-Wunused-parameter]
124 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.cpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp
[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.cpp
[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp
[ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp
[ 24%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.cpp
[ 25%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Version.cpp
[ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
114 | } else if (init == mask) {
| ~~~~~^~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter ‘position’ [-Wunused-parameter]
121 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter ‘position’ [-Wunused-parameter]
162 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter ‘position’ [-Wunused-parameter]
356 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp
In file included from /usr/include/c++/14/iostream:41,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:27:
In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]’,
inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:403:33:
/usr/include/c++/14/ostream:210:25: warning: ‘extrapol’ may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: ‘extrapol’ was declared here
346 | long long extrapol;
| ^~~~~~~~
In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]’,
inlined from ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’ at /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:404:26:
/usr/include/c++/14/ostream:210:25: warning: ‘y’ may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp: In function ‘size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: ‘y’ was declared here
347 | long long y;
| ^
[ 29%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.hpp:30,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/LegacyAdapter.cpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/References.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/bind.hpp: At global scope:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Exception.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumInfo.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor ‘pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr<std::basic_istream<char> >, const pwiz::msdata::MSData&, bool)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type ‘struct pwiz::msdata::SpectrumList_mzXML::index_not_found’ by value [-Wcatch-value=]
84 | } catch (index_not_found e){
| ^
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter ‘position’ [-Wunused-parameter]
128 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter ‘position’ [-Wunused-parameter]
212 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter ‘position’ [-Wunused-parameter]
239 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter ‘position’ [-Wunused-parameter]
282 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter ‘position’ [-Wunused-parameter]
302 | virtual Status endElement(const std::string& name, stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
701 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter ‘position’ [-Wunused-parameter]
702 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter ‘position’ [-Wunused-parameter]
710 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter ‘position’ [-Wunused-parameter]
736 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter ‘position’ [-Wunused-parameter]
754 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
778 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter ‘position’ [-Wunused-parameter]
779 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter ‘text’ [-Wunused-parameter]
796 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter ‘position’ [-Wunused-parameter]
797 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter ‘position’ [-Wunused-parameter]
885 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
107 | msd.id = msd.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter ‘filename’ [-Wunused-parameter]
126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter ‘head’ [-Wunused-parameter]
133 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter ‘config’ [-Wunused-parameter]
136 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter ‘filename’ [-Wunused-parameter]
201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter ‘head’ [-Wunused-parameter]
216 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter ‘config’ [-Wunused-parameter]
219 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():"");
| ~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter ‘head’ [-Wunused-parameter]
267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter ‘head’ [-Wunused-parameter]
273 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter ‘config’ [-Wunused-parameter]
276 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter ‘config’ [-Wunused-parameter]
296 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter ‘head’ [-Wunused-parameter]
307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter ‘head’ [-Wunused-parameter]
317 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter ‘config’ [-Wunused-parameter]
320 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter ‘config’ [-Wunused-parameter]
353 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter ‘filename’ [-Wunused-parameter]
364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
397 | sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
401 | result.id = result.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter ‘head’ [-Wunused-parameter]
380 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter ‘config’ [-Wunused-parameter]
383 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter ‘config’ [-Wunused-parameter]
410 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter ‘filename’ [-Wunused-parameter]
429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter ‘filename’ [-Wunused-parameter]
462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename,
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter ‘head’ [-Wunused-parameter]
463 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter ‘result’ [-Wunused-parameter]
464 | MSData& result,
| ~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter ‘runIndex’ [-Wunused-parameter]
465 | int runIndex,
| ~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter ‘config’ [-Wunused-parameter]
466 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter ‘config’ [-Wunused-parameter]
488 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter ‘head’ [-Wunused-parameter]
533 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter ‘config’ [-Wunused-parameter]
536 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
from /usr/include/c++/14/string:51:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here
34 | MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp
[ 31%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp
[ 32%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 34%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function ‘void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteCount’ may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: ‘byteCount’ was declared here
131 | size_t byteCount;
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteBuffer’ may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: ‘byteBuffer’ was declared here
132 | const void* byteBuffer;
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/usr/include/boost/bind.hpp: At global scope:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter ‘position’ [-Wunused-parameter]
121 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter ‘position’ [-Wunused-parameter]
162 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter ‘position’ [-Wunused-parameter]
356 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor ‘pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr<std::basic_istream<char> >, const pwiz::msdata::MSData&, bool)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type ‘struct pwiz::msdata::SpectrumList_mzXML::index_not_found’ by value [-Wcatch-value=]
84 | } catch (index_not_found e){
| ^
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter ‘position’ [-Wunused-parameter]
128 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter ‘position’ [-Wunused-parameter]
212 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter ‘position’ [-Wunused-parameter]
239 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter ‘position’ [-Wunused-parameter]
282 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter ‘position’ [-Wunused-parameter]
302 | virtual Status endElement(const std::string& name, stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
701 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter ‘position’ [-Wunused-parameter]
702 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter ‘position’ [-Wunused-parameter]
710 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter ‘position’ [-Wunused-parameter]
736 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter ‘position’ [-Wunused-parameter]
754 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
778 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter ‘position’ [-Wunused-parameter]
779 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter ‘text’ [-Wunused-parameter]
796 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter ‘position’ [-Wunused-parameter]
797 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter ‘position’ [-Wunused-parameter]
885 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:24:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter ‘position’ [-Wunused-parameter]
85 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter ‘position’ [-Wunused-parameter]
136 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter ‘position’ [-Wunused-parameter]
195 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter ‘position’ [-Wunused-parameter]
267 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
504 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter ‘position’ [-Wunused-parameter]
505 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
697 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter ‘position’ [-Wunused-parameter]
698 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter ‘position’ [-Wunused-parameter]
970 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1083 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
1359 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1360 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1693 | for (int i = 1; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1712 | for (int i = 2; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double, std::allocator<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1774 | for (int i = 1; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double, std::allocator<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1793 | for (int i = 2; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter ‘writer’ [-Wunused-parameter]
1627 | void writeMzMLbExtra<BinaryDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter ‘writer’ [-Wunused-parameter]
1820 | void writeMzMLbExtra<IntegerDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList")
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter ‘position’ [-Wunused-parameter]
2955 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter ‘position’ [-Wunused-parameter]
3085 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ ||
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter ‘position’ [-Wunused-parameter]
3333 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
86 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter ‘position’ [-Wunused-parameter]
87 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter ‘position’ [-Wunused-parameter]
95 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter ‘position’ [-Wunused-parameter]
120 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter ‘position’ [-Wunused-parameter]
165 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter ‘position’ [-Wunused-parameter]
201 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
1121 | if ((result >= 0 && result < size()) || s == 0)
| ~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.hpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter]
1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter]
1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp:39:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp:40:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In function ‘std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
582 | if (id.find("controllerType=0 controllerNumber=1") != 0)
| ^~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:587:9: note: here
587 | case MS_Bruker_Agilent_YEP_nativeID_format:
| ^~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here
34 | MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_construct.h:61,
from /usr/include/c++/14/bits/stl_tempbuf.h:61,
from /usr/include/c++/14/memory:66,
from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 40%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Version.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp
[ 42%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp
[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp: In member function ‘virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector<std::__cxx11::basic_string<char> >&, const Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter ‘config’ [-Wunused-parameter]
80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector<string>& results, const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
In file included from /usr/include/c++/14/bits/stl_tempbuf.h:62:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here
34 | MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.hpp:27,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 46%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Exception.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
107 | msd.id = msd.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter ‘filename’ [-Wunused-parameter]
126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter ‘head’ [-Wunused-parameter]
133 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter ‘config’ [-Wunused-parameter]
136 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter ‘filename’ [-Wunused-parameter]
201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter ‘head’ [-Wunused-parameter]
216 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter ‘config’ [-Wunused-parameter]
219 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():"");
| ~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter ‘head’ [-Wunused-parameter]
267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter ‘head’ [-Wunused-parameter]
273 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter ‘config’ [-Wunused-parameter]
276 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter ‘config’ [-Wunused-parameter]
296 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter ‘head’ [-Wunused-parameter]
307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter ‘head’ [-Wunused-parameter]
317 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter ‘config’ [-Wunused-parameter]
320 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter ‘config’ [-Wunused-parameter]
353 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter ‘filename’ [-Wunused-parameter]
364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
397 | sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: ‘boost::filesystem::path boost::filesystem::path::branch_path() const’ is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
401 | result.id = result.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter ‘head’ [-Wunused-parameter]
380 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter ‘config’ [-Wunused-parameter]
383 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter ‘config’ [-Wunused-parameter]
410 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter ‘filename’ [-Wunused-parameter]
429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter ‘filename’ [-Wunused-parameter]
462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename,
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter ‘head’ [-Wunused-parameter]
463 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter ‘result’ [-Wunused-parameter]
464 | MSData& result,
| ~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter ‘runIndex’ [-Wunused-parameter]
465 | int runIndex,
| ~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter ‘config’ [-Wunused-parameter]
466 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter ‘config’ [-Wunused-parameter]
488 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function ‘virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter ‘head’ [-Wunused-parameter]
533 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter ‘config’ [-Wunused-parameter]
536 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
from /usr/include/c++/14/string:51:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here
34 | MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.hpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function ‘void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter ‘useWorkerThreads’ [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter ‘continueOnError’ [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function ‘void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : "";
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter ‘position’ [-Wunused-parameter]
85 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter ‘position’ [-Wunused-parameter]
136 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter ‘position’ [-Wunused-parameter]
195 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter ‘position’ [-Wunused-parameter]
267 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
504 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter ‘position’ [-Wunused-parameter]
505 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
697 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter ‘position’ [-Wunused-parameter]
698 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter ‘position’ [-Wunused-parameter]
970 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1083 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
1359 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1360 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1693 | for (int i = 1; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1712 | for (int i = 2; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double, std::allocator<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1774 | for (int i = 1; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double, std::allocator<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1793 | for (int i = 2; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter ‘writer’ [-Wunused-parameter]
1627 | void writeMzMLbExtra<BinaryDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In function ‘void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter ‘writer’ [-Wunused-parameter]
1820 | void writeMzMLbExtra<IntegerDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList")
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter ‘position’ [-Wunused-parameter]
2955 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter ‘position’ [-Wunused-parameter]
3085 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ ||
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter ‘position’ [-Wunused-parameter]
3333 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
[ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function ‘void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteCount’ may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: ‘byteCount’ was declared here
131 | size_t byteCount;
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: ‘byteBuffer’ may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: ‘byteBuffer’ was declared here
132 | const void* byteBuffer;
| ^~~~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp
[ 51%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:32:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:33:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
278 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter ‘position’ [-Wunused-parameter]
279 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:24:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:32:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:33:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name));
| ~~~~~~~~~~~~~~^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
157 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
166 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
195 | if (bfs::path(sf.location).leaf() == "AcqData" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
207 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
216 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
222 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
228 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::vector<pwiz::msdata::{anonymous}::PrecursorInfo> pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter ‘spectrumListPtr’ [-Wunused-parameter]
454 | const SpectrumListPtr spectrumListPtr,
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
878 | string fileExtension = bal::to_lower_copy(bfs::extension(name));
| ~~~~~~~~~~~~~~^~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1027 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf());
| ~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1156 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter ‘position’ [-Wunused-parameter]
1237 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1285 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1353 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 54%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/IO.hpp:32,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
86 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter ‘position’ [-Wunused-parameter]
87 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter ‘position’ [-Wunused-parameter]
95 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter ‘position’ [-Wunused-parameter]
120 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter ‘position’ [-Wunused-parameter]
165 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter ‘position’ [-Wunused-parameter]
201 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
1121 | if ((result >= 0 && result < size()) || s == 0)
| ~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter]
1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In member function ‘virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter ‘getBinaryData’ [-Wunused-parameter]
1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp: In function ‘std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
582 | if (id.find("controllerType=0 controllerNumber=1") != 0)
| ^~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.cpp:587:9: note: here
587 | case MS_Bruker_Agilent_YEP_nativeID_format:
| ^~~~
[ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor ‘pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please
| ~~~~~~~^~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Exception.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor ‘pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: ‘pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_’ will be initialized after [-Wreorder]
337 | mru_list<size_t> taskMRU_;
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: ‘bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_’ [-Wreorder]
334 | bool continueOnError_;
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder]
60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError)
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.hpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp:39:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function ‘virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter ‘filename’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter ‘head’ [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSDataFile.cpp:40:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:31:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here
34 | MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.cpp
[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Base64.cpp
[ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp
[ 64%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.cpp:25:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Base64.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 67%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function ‘bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.hpp:30:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_construct.h:61,
from /usr/include/c++/14/bits/stl_tempbuf.h:61,
from /usr/include/c++/14/memory:66,
from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 68%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp: In member function ‘virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector<std::__cxx11::basic_string<char> >&, const Config&) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter ‘config’ [-Wunused-parameter]
80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector<string>& results, const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
In file included from /usr/include/c++/14/bits/stl_tempbuf.h:62:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:98: required from here
34 | MzMobilityWindow(double mobility, double mobilityTolerance) : MzMobilityWindow(std::make_pair(mobility - mobilityTolerance, mobility + mobilityTolerance)) {}
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp
[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.hpp:27,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.cpp:32:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.cpp:33:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.hpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:24:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData<T>::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)’ is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<double>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)’ is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<double>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<double>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<double>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData<T>::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = float]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = float]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = float]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)’ is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<float>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)’ is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<float>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<float>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<float>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData<T>::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = long int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = long int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = long int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::iterator& pwiz::util::BinaryData<long int>::iterator::operator=(const pwiz::util::BinaryData<long int>::iterator&)’ is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<long int>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long int]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::iterator& pwiz::util::BinaryData<long int>::iterator::operator=(const pwiz::util::BinaryData<long int>::iterator&)’ is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<long int>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long int]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::const_iterator& pwiz::util::BinaryData<long int>::const_iterator::operator=(const pwiz::util::BinaryData<long int>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<long int>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long int]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::const_iterator& pwiz::util::BinaryData<long int>::const_iterator::operator=(const pwiz::util::BinaryData<long int>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<long int>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long int]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp: In function ‘void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset ‘1’ outside bounds of constant string [-Warray-bounds=]
543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: ‘inCDATA’ may be used uninitialized [-Wmaybe-uninitialized]
549 | if (inCDATA)
| ^~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: ‘inCDATA’ was declared here
501 | bool inCDATA;
| ^~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/iostreams/device/file_descriptor.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘void pwiz::util::IntegerSet::insert(Interval)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function ‘void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : "";
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter ‘Mode’ [-Wunused-parameter]
824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter ‘Mode’ [-Wunused-parameter]
1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.hpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 76%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function ‘void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter ‘useWorkerThreads’ [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter ‘continueOnError’ [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:32:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:33:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined
54 | #pragma GCC warning "WIN32 is NOT defined"
| ^~~~~~~~~~~~~~~~~~~~~~
[ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
278 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter ‘position’ [-Wunused-parameter]
279 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.cpp:21:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.cpp:25:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:32:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 81%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.cpp
In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9,
from /usr/include/boost/function/detail/prologue.hpp:12,
from /usr/include/boost/function.hpp:30,
from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /usr/include/boost/algorithm/string/find_iterator.hpp:24,
from /usr/include/boost/algorithm/string/iter_find.hpp:27,
from /usr/include/boost/algorithm/string/split.hpp:16,
from /usr/include/boost/algorithm/string.hpp:23,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:31:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:33:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name));
| ~~~~~~~~~~~~~~^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
157 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
166 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
195 | if (bfs::path(sf.location).leaf() == "AcqData" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
207 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
216 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
222 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
228 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘std::vector<pwiz::msdata::{anonymous}::PrecursorInfo> pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter ‘spectrumListPtr’ [-Wunused-parameter]
454 | const SpectrumListPtr spectrumListPtr,
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
878 | string fileExtension = bal::to_lower_copy(bfs::extension(name));
| ~~~~~~~~~~~~~~^~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1027 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function ‘void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf());
| ~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: ‘boost::filesystem::path boost::filesystem::path::leaf() const’ is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro ‘BFS_STRING’
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1156 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter ‘position’ [-Wunused-parameter]
1237 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1285 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter ‘position’ [-Wunused-parameter]
1353 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor ‘pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please
| ~~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter ‘filepath’ [-Wunused-parameter]
350 | force_close_handles_to_filepath(const std::string &filepath,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter ‘closeMemoryMappedSections’ [-Wunused-parameter]
351 | bool closeMemoryMappedSections) noexcept(true)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
686 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
710 | bfs::copy_directory(from, to, ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
764 | bfs::copy_directory(from, to, *ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
766 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::check_path_length(const std::string&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter ‘path’ [-Wunused-parameter]
967 | check_path_length(const string &path)
| ~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/common/ParamTypes.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Exception.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp: In member function ‘virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter ‘msg’ [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 87%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Base64.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor ‘pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: ‘pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_’ will be initialized after [-Wreorder]
337 | mru_list<size_t> taskMRU_;
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: ‘bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_’ [-Wreorder]
334 | bool continueOnError_;
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder]
60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError)
| ^~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:28:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter ‘name’ [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter ‘data’ [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter ‘position’ [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter ‘name’ [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter ‘attributes’ [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter ‘position’ [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter ‘name’ [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter ‘position’ [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp: In member function ‘virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter ‘text’ [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter ‘position’ [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.hpp:31:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:29:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 89%] Linking CXX static library libpwizlite.a
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.cpp:25:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o"
/usr/bin/ranlib libpwizlite.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 89%] Built target pwizlite-static
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Base64.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/XMLWriter.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.cpp
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp: In member function ‘virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter ‘updateMessage’ [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
[ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp
[ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.cpp:32:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:24:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/SHA1Calculator.cpp:33:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
[ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData<T>::at(size_type) [with T = double; reference = double&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = double]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)’ is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<double>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)’ is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<double>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<double>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<double>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = float; const_reference = const float&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData<T>::at(size_type) [with T = float; reference = float&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = float]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = float]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = float]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)’ is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<float>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)’ is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<float>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<float>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<float>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = long int; const_reference = const long int&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of ‘T& pwiz::util::BinaryData<T>::at(size_type) [with T = long int; reference = long int&; size_type = long unsigned int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = long int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = long int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter ‘cliNumericArray’ [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of ‘void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = long int]’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::iterator& pwiz::util::BinaryData<long int>::iterator::operator=(const pwiz::util::BinaryData<long int>::iterator&)’ is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<long int>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long int]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::iterator& pwiz::util::BinaryData<long int>::iterator::operator=(const pwiz::util::BinaryData<long int>::iterator&)’ is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because ‘pwiz::util::BinaryData<long int>::iterator’ has user-provided ‘pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long int]’
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::const_iterator& pwiz::util::BinaryData<long int>::const_iterator::operator=(const pwiz::util::BinaryData<long int>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<long int>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long int]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared ‘constexpr pwiz::util::BinaryData<long int>::const_iterator& pwiz::util::BinaryData<long int>::const_iterator::operator=(const pwiz::util::BinaryData<long int>::const_iterator&)’ is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because ‘pwiz::util::BinaryData<long int>::const_iterator’ has user-provided ‘pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long int]’
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
[ 97%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.cpp
[ 98%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DHDF_NO_NAMESPACE -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/iostreams/device/file_descriptor.hpp:28,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined
54 | #pragma GCC warning "WIN32 is NOT defined"
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Environment.hpp:24,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:29,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Std.hpp:31:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter ‘Mode’ [-Wunused-parameter]
824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function ‘std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter ‘Mode’ [-Wunused-parameter]
1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘void pwiz::util::IntegerSet::insert(Interval)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp: In member function ‘bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp: In function ‘void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset ‘1’ outside bounds of constant string [-Warray-bounds=]
543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.cpp:21:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: ‘inCDATA’ may be used uninitialized [-Wmaybe-uninitialized]
549 | if (inCDATA)
| ^~
/<<PKGBUILDDIR>>/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: ‘inCDATA’ was declared here
501 | bool inCDATA;
| ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:34,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:26:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp: In lambda function:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:87:135: warning: comparison is always false due to limited range of data type [-Wtype-limits]
87 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast<unsigned char>(ch)) || static_cast<int>(ch) < 0; });
| ~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9,
from /usr/include/boost/function/detail/prologue.hpp:12,
from /usr/include/boost/function.hpp:30,
from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /usr/include/boost/algorithm/string/find_iterator.hpp:24,
from /usr/include/boost/algorithm/string/iter_find.hpp:27,
from /usr/include/boost/algorithm/string/split.hpp:16,
from /usr/include/boost/algorithm/string.hpp:23,
from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/String.hpp:31:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter ‘filepath’ [-Wunused-parameter]
350 | force_close_handles_to_filepath(const std::string &filepath,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter ‘closeMemoryMappedSections’ [-Wunused-parameter]
351 | bool closeMemoryMappedSections) noexcept(true)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
686 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
710 | bfs::copy_directory(from, to, ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
764 | bfs::copy_directory(from, to, *ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: ‘void boost::filesystem::copy_directory(const path&, const path&)’ is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
766 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp: In function ‘void pwiz::util::check_path_length(const std::string&)’:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter ‘path’ [-Wunused-parameter]
967 | check_path_length(const string &path)
| ~~~~~~~~~~~~~~^~~~
[100%] Linking CXX shared library libpwizlite.so
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file,CMakeFiles/pwizlite-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/aarch64-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[100%] Built target pwizlite-shared
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
dh_auto_test -O--build-system=cmake
create-stamp debian/debhelper-build-stamp
dh_testroot -O--build-system=cmake
dh_prep -O--build-system=cmake
dh_auto_install -O--build-system=cmake
cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libpwizlite.pc
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.so.3
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libpwizlite.a
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
dh_install -O--build-system=cmake
dh_installdocs -O--build-system=cmake
dh_installchangelogs -O--build-system=cmake
dh_installman -O--build-system=cmake
dh_installsystemduser -O--build-system=cmake
dh_lintian -O--build-system=cmake
dh_perl -O--build-system=cmake
dh_link -O--build-system=cmake
dh_strip_nondeterminism -O--build-system=cmake
dh_compress -O--build-system=cmake
dh_fixperms -O--build-system=cmake
dh_missing -O--build-system=cmake
dh_dwz -a -O--build-system=cmake
dh_strip -a -O--build-system=cmake
dh_makeshlibs -a -O--build-system=cmake
dh_shlibdeps -a -O--build-system=cmake
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: symbol H5Dopen2 used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Eset_auto2 used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Pcreate used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Dset_extent used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Dwrite used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5P_CLS_FILE_ACCESS_ID_g used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Sclose used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Sget_simple_extent_dims used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Dget_create_plist used by debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.103 (it uses none of the library's symbols)
dh_installdeb -O--build-system=cmake
dh_gencontrol -O--build-system=cmake
dh_md5sums -O--build-system=cmake
dh_builddeb -O--build-system=cmake
dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_arm64.deb'.
dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_arm64.deb'.
dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.8-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../libpwizlite_3.0.8-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-17T04:30:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libpwizlite_3.0.8-1_arm64.changes:
----------------------------------
Format: 1.8
Date: Thu, 16 May 2024 14:24:07 +0200
Source: libpwizlite
Binary: libpwizlite-dev libpwizlite3t64 libpwizlite3t64-dbgsym
Architecture: arm64
Version: 3.0.8-1
Distribution: sid
Urgency: low
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Changed-By: Filippo Rusconi <lopippo@debian.org>
Description:
libpwizlite-dev - Library to load mzML/mzXML files (dev files)
libpwizlite3t64 - Library to load mzML/mzXML files (runtime files)
Changes:
libpwizlite (3.0.8-1) unstable; urgency=low
.
* New upstream version with small glitch.
* Upload to unstable.
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Files:
71fbe5e6611fcbc5789f9856ff9e27c4 1208084 libdevel optional libpwizlite-dev_3.0.8-1_arm64.deb
8ff530bafa2bedc160f571de503899f4 12731700 debug optional libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb
8eb3440d3e5d7785dcf0afca22f64c66 813020 libs optional libpwizlite3t64_3.0.8-1_arm64.deb
3b640aa293d18c425e41366e5d67354f 9458 libs optional libpwizlite_3.0.8-1_arm64.buildinfo
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libpwizlite
Binary: libpwizlite-dev libpwizlite3t64 libpwizlite3t64-dbgsym
Architecture: arm64
Version: 3.0.8-1
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Sun, 17 Nov 2024 04:30:32 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
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base-passwd (= 3.6.5),
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binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
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bsdutils (= 1:2.40.2-11),
build-essential (= 12.12),
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cmake (= 3.31.0-1),
cmake-data (= 3.31.0-1),
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cpp-14 (= 14.2.0-8),
cpp-14-aarch64-linux-gnu (= 14.2.0-8),
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debconf (= 1.5.87),
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gcc-14-base (= 14.2.0-8),
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libboost-system1.83.0 (= 1.83.0-3.2+b1),
libboost-thread-dev (= 1.83.0.2+b2),
libboost-thread1.83-dev (= 1.83.0-3.2+b1),
libboost-thread1.83.0 (= 1.83.0-3.2+b1),
libboost1.83-dev (= 1.83.0-3.2+b1),
libbrotli-dev (= 1.1.0-2+b6),
libbrotli1 (= 1.1.0-2+b6),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3+b1),
libcap2 (= 1:2.66-5+b1),
libcc1-0 (= 14.2.0-8),
libcom-err2 (= 1.47.1-1+b1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcurl4-openssl-dev (= 8.11.0-1),
libcurl4t64 (= 8.11.0-1),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.273),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.12~1.gbp82cafd),
libelf1t64 (= 0.192-4),
libevent-2.1-7t64 (= 2.1.12-stable-10+b1),
libexpat1 (= 2.6.4-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-8),
libgcc-s1 (= 14.2.0-8),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-8),
libgmp-dev (= 2:6.3.0+dfsg-2+b2),
libgmp10 (= 2:6.3.0+dfsg-2+b2),
libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b2),
libgnutls-dane0t64 (= 3.8.8-2),
libgnutls-openssl27t64 (= 3.8.8-2),
libgnutls28-dev (= 3.8.8-2),
libgnutls30t64 (= 3.8.8-2),
libgomp1 (= 14.2.0-8),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libgssrpc4t64 (= 1.21.3-3),
libhdf5-103-1t64 (= 1.10.10+repack-4),
libhdf5-cpp-103-1t64 (= 1.10.10+repack-4),
libhdf5-dev (= 1.10.10+repack-4),
libhdf5-fortran-102t64 (= 1.10.10+repack-4),
libhdf5-hl-100t64 (= 1.10.10+repack-4),
libhdf5-hl-cpp-100t64 (= 1.10.10+repack-4),
libhdf5-hl-fortran-100t64 (= 1.10.10+repack-4),
libhogweed6t64 (= 3.10-1+b1),
libhwasan0 (= 14.2.0-8),
libicu-dev (= 72.1-5+b1),
libicu72 (= 72.1-5+b1),
libidn2-0 (= 2.3.7-2+b1),
libidn2-dev (= 2.3.7-2+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-8),
libjansson4 (= 2.14-2+b3),
libjpeg-dev (= 1:2.1.5-3+b1),
libjpeg62-turbo (= 1:2.1.5-3+b1),
libjpeg62-turbo-dev (= 1:2.1.5-3+b1),
libjsoncpp26 (= 1.9.6-2),
libk5crypto3 (= 1.21.3-3),
libkadm5clnt-mit12 (= 1.21.3-3),
libkadm5srv-mit12 (= 1.21.3-3),
libkdb5-10t64 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-4),
libkrb5-3 (= 1.21.3-3),
libkrb5-dev (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
libldap-2.5-0 (= 2.5.18+dfsg-3+b1),
libldap-dev (= 2.5.18+dfsg-3+b1),
liblsan0 (= 14.2.0-8),
liblz4-1 (= 1.9.4-3+b1),
liblzma5 (= 5.6.3-1+b1),
libmagic-mgc (= 1:5.45-3+b1),
libmagic1t64 (= 1:5.45-3+b1),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.2-11),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.1-1+b2),
libncursesw6 (= 6.5-2+b1),
libnettle8t64 (= 3.10-1+b1),
libnghttp2-14 (= 1.64.0-1),
libnghttp2-dev (= 1.64.0-1),
libnsl2 (= 1.3.0-3+b3),
libp11-kit-dev (= 0.25.5-2+b1),
libp11-kit0 (= 0.25.5-2+b1),
libpam-modules (= 1.5.3-7+b1),
libpam-modules-bin (= 1.5.3-7+b1),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7+b1),
libpcre2-8-0 (= 10.44-4),
libperl5.40 (= 5.40.0-7),
libpipeline1 (= 1.5.8-1),
libpkgconf3 (= 1.8.1-4),
libproc2-0 (= 2:4.0.4-6),
libpsl-dev (= 0.21.2-1.1+b1),
libpsl5t64 (= 0.21.2-1.1+b1),
libpython3-stdlib (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-3),
libpython3.12-stdlib (= 3.12.7-3),
libreadline8t64 (= 8.2-5),
librhash1 (= 1.4.5-1),
librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5),
libsasl2-2 (= 2.1.28+dfsg1-8),
libsasl2-modules-db (= 2.1.28+dfsg1-8),
libseccomp2 (= 2.5.5-1+b3),
libselinux1 (= 3.7-3+b1),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-11),
libsqlite3-0 (= 3.46.1-1),
libssh2-1-dev (= 1.11.1-1),
libssh2-1t64 (= 1.11.1-1),
libssl-dev (= 3.3.2-2),
libssl3t64 (= 3.3.2-2),
libstdc++-14-dev (= 14.2.0-8),
libstdc++6 (= 14.2.0-8),
libsystemd0 (= 257~rc2-3),
libsz2 (= 1.1.3-1+b1),
libtasn1-6 (= 4.19.0-3+b3),
libtasn1-6-dev (= 4.19.0-3+b3),
libtinfo6 (= 6.5-2+b1),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3+b1),
libtool (= 2.4.7-8),
libtsan2 (= 14.2.0-8),
libubsan1 (= 14.2.0-8),
libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257~rc2-3),
libunbound8 (= 1.22.0-1),
libunistring5 (= 1.2-1+b1),
libuuid1 (= 2.40.2-11),
libuv1t64 (= 1.48.0-7),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
libxxhash0 (= 0.8.2-2+b2),
libzstd-dev (= 1.5.6+dfsg-1+b1),
libzstd1 (= 1.5.6+dfsg-1+b1),
linux-libc-dev (= 6.11.7-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1+b1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2+b1),
netbase (= 6.4),
nettle-dev (= 3.10-1+b1),
openssl-provider-legacy (= 3.3.2-2),
patch (= 2.7.6-7+b1),
perl (= 5.40.0-7),
perl-base (= 5.40.0-7),
perl-modules-5.40 (= 5.40.0-7),
pkgconf (= 1.8.1-4),
pkgconf-bin (= 1.8.1-4),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-6),
python3 (= 3.12.7-1),
python3-docutils (= 0.21.2+dfsg-2),
python3-minimal (= 3.12.7-1),
python3-roman (= 4.2-1),
python3.12 (= 3.12.7-3),
python3.12-minimal (= 3.12.7-3),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1+b1),
sed (= 4.9-2+b1),
sensible-utils (= 0.0.24),
sgml-base (= 1.31),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3+b1),
tzdata (= 2024b-3),
util-linux (= 2.40.2-11),
xml-core (= 0.19),
xz-utils (= 5.6.3-1+b1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="en_US.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1715862247"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libpwizlite-dev_3.0.8-1_arm64.deb
---------------------------------
new Debian package, version 2.0.
size 1208084 bytes: control archive=5360 bytes.
719 bytes, 20 lines control
14850 bytes, 165 lines md5sums
Package: libpwizlite-dev
Source: libpwizlite
Version: 3.0.8-1
Architecture: arm64
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Installed-Size: 11742
Depends: libpwizlite3t64 (= 3.0.8-1)
Replaces: libpwizlite-dev (<< 3.0.8-1)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://salsa.debian.org/debichem-team/libpwizlite
Description: Library to load mzML/mzXML files (dev files)
This library is a dumbed-down version of the Proteowizard library.
This library only contains the required features to
load standard mzML/mzXML mass spectrometry data files.
.
See http://proteowizard.sourceforge.net/ for the original project.
.
This package ships the development files.
drwxr-xr-x root/root 0 2024-05-16 12:24 ./
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/
-rw-r--r-- root/root 643 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/
-rw-r--r-- root/root 3056 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/base.hpp
-rw-r--r-- root/root 7534 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/bitfield.hpp
-rw-r--r-- root/root 1987 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/iterator.hpp
-rw-r--r-- root/root 7533 2024-05-16 12:24 ./usr/include/pwizlite/boost/enum/macros.hpp
-rw-r--r-- root/root 1923 2024-05-16 12:24 ./usr/include/pwizlite/boost/foreach_field.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/
-rw-r--r-- root/root 11196 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/filter/
-rw-r--r-- root/root 8739 2024-05-16 12:24 ./usr/include/pwizlite/boost/iostreams/filter/base64.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/
-rw-r--r-- root/root 4719 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/args.hpp
-rw-r--r-- root/root 3605 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/cenv.hpp
-rw-r--r-- root/root 1509 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/config.hpp
-rw-r--r-- root/root 5233 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/convert.hpp
-rw-r--r-- root/root 2482 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/cstdio.hpp
-rw-r--r-- root/root 435 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/cstdlib.hpp
-rw-r--r-- root/root 11864 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/filebuf.hpp
-rw-r--r-- root/root 7060 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/fstream.hpp
-rw-r--r-- root/root 4801 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/iostream.hpp
-rw-r--r-- root/root 3968 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/stackstring.hpp
-rw-r--r-- root/root 2921 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/system.hpp
-rw-r--r-- root/root 1225 2024-05-16 12:24 ./usr/include/pwizlite/boost/nowide/windows.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/detail/
-rw-r--r-- root/root 3763 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/detail/member_dereference.hpp
-rw-r--r-- root/root 1525 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/detail/restricted.hpp
-rw-r--r-- root/root 6573 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/detail/singleton_manager.hpp
-rw-r--r-- root/root 7312 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/mutexed_singleton.hpp
-rw-r--r-- root/root 6734 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/singleton.hpp
-rw-r--r-- root/root 6611 2024-05-16 12:24 ./usr/include/pwizlite/boost/utility/thread_specific_singleton.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/
-rw-r--r-- root/root 1253 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/Version.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/analysis/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/analysis/demux/
-rw-r--r-- root/root 1002 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/analysis/spectrum_processing/
-rw-r--r-- root/root 5044 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/
-rw-r--r-- root/root 1593 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/BinaryIndexStream.hpp
-rw-r--r-- root/root 1636 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/CVTranslator.hpp
-rw-r--r-- root/root 2252 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/Index.hpp
-rw-r--r-- root/root 1458 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/MemoryIndex.hpp
-rw-r--r-- root/root 11357 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp
-rw-r--r-- root/root 5215 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/Unimod.hpp
-rw-r--r-- root/root 861939 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/cv.hpp
-rw-r--r-- root/root 4606 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/cv.inl
-rw-r--r-- root/root 12850 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/diff_std.hpp
-rw-r--r-- root/root 2367 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/common/obo.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/
-rw-r--r-- root/root 3329 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/CalibrationParameters.hpp
-rw-r--r-- root/root 5160 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/FrequencyData.hpp
-rw-r--r-- root/root 1129 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp
-rw-r--r-- root/root 17712 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/MinimumPepXML.hpp
-rw-r--r-- root/root 8832 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/PeakData.hpp
-rw-r--r-- root/root 2801 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/misc/SampleDatum.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/
-rw-r--r-- root/root 5510 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp
-rw-r--r-- root/root 1916 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp
-rw-r--r-- root/root 1823 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp
-rw-r--r-- root/root 1451 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp
-rw-r--r-- root/root 6695 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp
-rw-r--r-- root/root 6135 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Diff.hpp
-rw-r--r-- root/root 9971 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/IO.hpp
-rw-r--r-- root/root 1941 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Index_mzML.hpp
-rw-r--r-- root/root 3820 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp
-rw-r--r-- root/root 39443 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/MSData.hpp
-rw-r--r-- root/root 4156 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/MSDataFile.hpp
-rw-r--r-- root/root 1120 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/MSDataMerger.hpp
-rw-r--r-- root/root 8700 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/MSNumpress.hpp
-rw-r--r-- root/root 2037 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp
-rw-r--r-- root/root 2522 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp
-rw-r--r-- root/root 12126 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Reader.hpp
-rw-r--r-- root/root 2658 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/References.hpp
-rw-r--r-- root/root 1464 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp
-rw-r--r-- root/root 1932 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp
-rw-r--r-- root/root 2015 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp
-rw-r--r-- root/root 2835 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp
-rw-r--r-- root/root 2515 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp
-rw-r--r-- root/root 2512 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp
-rw-r--r-- root/root 2143 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp
-rw-r--r-- root/root 4111 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp
-rw-r--r-- root/root 3290 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp
-rw-r--r-- root/root 2265 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp
-rw-r--r-- root/root 3128 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp
-rw-r--r-- root/root 1442 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp
-rw-r--r-- root/root 1426 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp
-rw-r--r-- root/root 1832 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp
-rw-r--r-- root/root 1802 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp
-rw-r--r-- root/root 1411 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp
-rw-r--r-- root/root 1656 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp
-rw-r--r-- root/root 1339 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp
-rw-r--r-- root/root 17361 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/TextWriter.hpp
-rw-r--r-- root/root 1379 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/Version.hpp
-rw-r--r-- root/root 1151 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/examples.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/mzmlb/
-rw-r--r-- root/root 3800 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/chemistry/
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drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/
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drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/filter/
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drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/filter/utilities/
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drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/resample/
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-rw-r--r-- root/root 3338 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/resample/utilities/
-rw-r--r-- root/root 2504 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/math/
-rw-r--r-- root/root 3460 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/math/HouseholderQR.hpp
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-rw-r--r-- root/root 9976 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/math/MatchedFilter.hpp
-rw-r--r-- root/root 5735 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/math/MatrixInverse.hpp
-rw-r--r-- root/root 3105 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/math/OrderedPair.hpp
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-rw-r--r-- root/root 3063 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/math/round.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/minimxml/
-rw-r--r-- root/root 23204 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/minimxml/SAXParser.hpp
-rw-r--r-- root/root 6677 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/
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-rw-r--r-- root/root 1483 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp
-rw-r--r-- root/root 4364 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Container.hpp
-rw-r--r-- root/root 5431 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/DateTime.hpp
-rw-r--r-- root/root 1623 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Environment.hpp
-rw-r--r-- root/root 4281 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Exception.hpp
-rw-r--r-- root/root 1137 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Export.hpp
-rw-r--r-- root/root 5637 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Filesystem.hpp
-rw-r--r-- root/root 3611 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Image.hpp
-rw-r--r-- root/root 4871 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/IntegerSet.hpp
-rw-r--r-- root/root 2830 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp
-rw-r--r-- root/root 2006 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/MSIHandler.hpp
-rw-r--r-- root/root 1267 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Once.hpp
-rw-r--r-- root/root 7180 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/SHA1.h
-rw-r--r-- root/root 2373 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp
-rw-r--r-- root/root 2862 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp
-rw-r--r-- root/root 1014 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Singleton.hpp
-rw-r--r-- root/root 1960 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Std.hpp
-rw-r--r-- root/root 2361 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Stream.hpp
-rw-r--r-- root/root 5927 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/String.hpp
-rw-r--r-- root/root 2973 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/TabReader.hpp
-rw-r--r-- root/root 1254 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/Timer.hpp
-rw-r--r-- root/root 4051 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp
-rw-r--r-- root/root 1243 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/almost_equal.hpp
-rw-r--r-- root/root 27829 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/automation_vector.h
-rw-r--r-- root/root 10618 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp
-rw-r--r-- root/root 2599 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/endian.hpp
-rw-r--r-- root/root 3962 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/mru_list.hpp
-rw-r--r-- root/root 11147 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp
-rw-r--r-- root/root 4103 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp
-rw-r--r-- root/root 11162 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/shared_map.hpp
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-rw-r--r-- root/root 11627 2024-05-16 12:24 ./usr/include/pwizlite/pwiz/utility/misc/virtual_map.hpp
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/cmake/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/cmake/pwizlite/
-rw-r--r-- root/root 770 2024-05-15 21:33 ./usr/lib/aarch64-linux-gnu/cmake/pwizlite/FindPwizLite.cmake
-rw-r--r-- root/root 501 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake
-rw-r--r-- root/root 10280656 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.a
lrwxrwxrwx root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.so -> libpwizlite.so.3.0.8
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/pkgconfig/
-rw-r--r-- root/root 227 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/pkgconfig/libpwizlite.pc
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/libpwizlite-dev/
-rw-r--r-- root/root 1475 2024-05-16 12:24 ./usr/share/doc/libpwizlite-dev/changelog.Debian.gz
-rw-r--r-- root/root 15134 2024-05-16 12:24 ./usr/share/doc/libpwizlite-dev/copyright
libpwizlite3t64-dbgsym_3.0.8-1_arm64.deb
----------------------------------------
new Debian package, version 2.0.
size 12731700 bytes: control archive=556 bytes.
404 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libpwizlite3t64-dbgsym
Source: libpwizlite
Version: 3.0.8-1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Installed-Size: 13127
Depends: libpwizlite3t64 (= 3.0.8-1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libpwizlite3t64
Build-Ids: d9d8ef5d4e33e71ed2332898cb0dba75c2b58f0f
drwxr-xr-x root/root 0 2024-05-16 12:24 ./
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/debug/.build-id/d9/
-rw-r--r-- root/root 13431624 2024-05-16 12:24 ./usr/lib/debug/.build-id/d9/d8ef5d4e33e71ed2332898cb0dba75c2b58f0f.debug
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64-dbgsym -> libpwizlite3t64
libpwizlite3t64_3.0.8-1_arm64.deb
---------------------------------
new Debian package, version 2.0.
size 813020 bytes: control archive=1108 bytes.
1038 bytes, 22 lines control
387 bytes, 5 lines md5sums
41 bytes, 1 lines shlibs
66 bytes, 2 lines triggers
Package: libpwizlite3t64
Source: libpwizlite
Version: 3.0.8-1
Architecture: arm64
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Installed-Size: 4791
Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-cpp-103-1t64 (>= 1.10.5), libstdc++6 (>= 14), zlib1g (>= 1:1.2.0)
Breaks: libpwizlite3 (<< 3.0.8-1)
Replaces: libpwizlite3, libpwizlite3t64 (<< 3.0.8-1)
Provides: libpwizlite3 (= 3.0.8-1)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://salsa.debian.org/debichem-team/libpwizlite
Description: Library to load mzML/mzXML files (runtime files)
This library is a dumbed-down version of the Proteowizard library.
This library only contains the required features to
load standard mzML/mzXML mass spectrometry data files.
.
See http://proteowizard.sourceforge.net/ for the original project.
.
This package ships the runtime library files.
drwxr-xr-x root/root 0 2024-05-16 12:24 ./
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/
lrwxrwxrwx root/root 0 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.so.3 -> libpwizlite.so.3.0.8
-rw-r--r-- root/root 4869744 2024-05-16 12:24 ./usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64/
-rw-r--r-- root/root 1475 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64/changelog.Debian.gz
-rw-r--r-- root/root 15134 2024-05-16 12:24 ./usr/share/doc/libpwizlite3t64/copyright
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/lintian/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 64 2024-05-16 12:24 ./usr/share/lintian/overrides/libpwizlite3t64
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/man/
drwxr-xr-x root/root 0 2024-05-16 12:24 ./usr/share/man/man3/
-rw-r--r-- root/root 1145 2024-05-16 12:24 ./usr/share/man/man3/libpwizlite.3.gz
lintian
-------
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dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
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Reading package lists...
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Install lintian build dependencies (apt-based resolver)
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Installing build dependencies
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Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
W: libpwizlite changes: distribution-and-changes-mismatch sid unstable
W: libpwizlite source: file-without-copyright-information src/pwiz/data/msdata/psi-ms.obo.dk1 [debian/copyright]
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 634644
Build-Time: 89
Distribution: sid
Host Architecture: arm64
Install-Time: 39
Job: /tmp/debusine-fetch-exec-upload-50faqytm/libpwizlite_3.0.8-1.dsc
Lintian: warn
Machine Architecture: arm64
Package: libpwizlite
Package-Time: 164
Source-Version: 3.0.8-1
Space: 634644
Status: successful
Version: 3.0.8-1
--------------------------------------------------------------------------------
Finished at 2024-11-17T04:30:33Z
Build needed 00:02:44, 634644k disk space