deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: all
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Description: |-
Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful
for development of applications for biological research.
Installed-Size: '33'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: med-bio-dev
Priority: optional
Recommends: bio-tradis, biobambam2, bioperl, bioperl-run, biosquid, cwltool, gffread,
goby-java, libace-perl, libai-fann-perl, libbambamc-dev, libbamtools-dev, libbigwig-dev,
libbio-alignio-stockholm-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl,
libbio-cluster-perl, libbio-coordinate-perl, libbio-das-lite-perl, libbio-db-biofetch-perl,
libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, libbio-db-seqfeature-perl,
libbio-eutilities-perl, libbio-featureio-perl, libbio-graphics-perl, libbio-mage-perl,
libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-samtools-perl, libbio-scf-perl,
libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl,
libbio-tools-run-remoteblast-perl, libbio-variation-perl, libbiococoa-dev, libbiojava-java,
libbiojava4-java, libbiojava6-java, libbioparser-dev, libblasr-dev, libbpp-core-dev,
libbpp-phyl-dev, libbpp-phyl-omics-dev, libbpp-popgen-dev, libbpp-qt-dev, libbpp-raa-dev,
libbpp-seq-dev, libbpp-seq-omics-dev, libcdk-java, libchado-perl, libcifpp-dev,
libconsensuscore-dev, libdivsufsort-dev, libedlib-dev, libfast5-dev, libfastahack-dev,
libffindex0-dev, libfml-dev, libgatbcore-dev, libgclib-dev, libgenome-dev, libgenome-model-tools-music-perl,
libgenome-perl, libgenometools0-dev, libgff-dev, libgkarrays-dev, libgo-perl,
libhdf5-dev, libhmsbeagle-dev, libhts-dev, libhtscodecs-dev, libhtsjdk-java, libjebl2-java,
libjloda-java, libkmer-dev, libmems-dev, libminimap2-dev, libmuscle-dev, libncbi-vdb-dev,
libncbi6-dev, libncl-dev, libngs-java, libnhgri-blastall-perl, libopenmm-dev,
libopenms-dev, libpal-java, libparasail-dev, libpbbam-dev, libpbdata-dev, libpbihdf-dev,
libpbseq-dev, libpdb-redo-dev, libpll-dev, libpwiz-dev, libqes-dev, librcsb-core-wrapper0-dev,
librdp-taxonomy-tree-java, librg-blast-parser-perl, librg-reprof-bundle-perl,
librostlab-blast0-dev, librostlab3-dev, libsbml5-dev, libseqan2-dev, libseqan3-dev,
libseqlib-dev, libslow5-dev, libsmithwaterman-dev, libsnp-sites1-dev, libsort-key-top-perl,
libspoa-dev, libsrf-dev, libssm-dev, libssu-dev, libssw-dev, libssw-java, libstaden-read-dev,
libstatgen-dev, libswiss-perl, libtabixpp-dev, libthread-pool-dev, libvcflib-dev,
libvibrant6-dev, libwfa2-dev, libzerg-perl, libzerg0-dev, mcl, nim-hts-dev, nim-kexpr-dev,
nim-lapper-dev, ont-fast5-api, pyfai, python3-airr, python3-anndata, python3-bcbio-gff,
python3-bioframe, python3-biom-format, python3-biomaj3, python3-biopython, python3-biotools,
python3-bx, python3-cgecore, python3-cigar, python3-cobra, python3-cogent3, python3-cooler,
python3-corepywrap, python3-csb, python3-cutadapt, python3-cyvcf2, python3-deeptools,
python3-deeptoolsintervals, python3-dendropy, python3-dnaio, python3-ete3, python3-fast5,
python3-freecontact, python3-gfapy, python3-gffutils, python3-gtfparse, python3-htseq,
python3-intervaltree-bio, python3-kineticstools, python3-loompy, python3-mirtop,
python3-nanoget, python3-ngs, python3-pairix, python3-pangolearn, python3-parasail,
python3-pbcommand, python3-pbconsensuscore, python3-pbcore, python3-peptidebuilder,
python3-presto, python3-propka, python3-py2bit, python3-pyabpoa, python3-pyani,
python3-pybedtools, python3-pybel, python3-pybigwig, python3-pyfaidx, python3-pyfastx,
python3-pymummer, python3-pyranges, python3-pysam, python3-pyspoa, python3-pyvcf,
python3-rdkit, python3-ruffus, python3-screed, python3-shasta, python3-skbio,
python3-slow5, python3-sqt, python3-streamz, python3-tinyalign, python3-torch,
python3-treetime, python3-unifrac, python3-wdlparse, r-bioc-biobase, r-cran-boolnet,
r-cran-corrplot, r-cran-distory, r-cran-fitdistrplus, r-cran-forecast, r-cran-genetics,
r-cran-gprofiler2, r-cran-haplo.stats, r-cran-metamix, r-cran-phangorn, r-cran-pheatmap,
r-cran-phylobase, r-cran-pscbs, r-cran-qqman, r-cran-rentrez, r-cran-rncl, r-cran-rnexml,
r-cran-rotl, r-cran-samr, r-cran-sctransform, r-cran-seqinr, r-cran-seurat, r-cran-tsne,
r-cran-vegan, r-cran-webgestaltr, ruby-bio, ruby-crb-blast, sbmltoolbox, snakemake,
toil
Section: metapackages
Source: debian-med
Suggests: bioclipse, capsule-nextflow, conda-package-handling, ctdconverter, cthreadpool-dev,
cwlformat, libargs-dev, libatomicqueue-dev, libbam-dev, libbbhash-dev, libbiosoup-dev,
libbtllib-dev, libcapsule-maven-nextflow-java, libconcurrentqueue-dev, libdisorder-dev,
libfast-perl, libforester-java, libfreecontact-dev, libfreecontact-doc, libfreecontact-perl,
libgatk-bwamem-java, libgatk-bwamem-jni, libgatk-fermilite-java, libgatk-fermilite-jni,
libgatk-native-bindings-java, libgenomicsdb-dev, libgenomicsdb-java, libicb-utils-java,
libmaus2-dev, libmilib-java, libminimap-dev, libmmblib-dev, libmodhmm-dev, libnexml-java,
libngs-sdk-dev, libpbcopper-dev, libqcpp-dev, librelion-dev, libroadrunner-dev,
librostlab-blast-doc, librostlab-doc, libsavvy-dev, libsuma-dev, libsvmloc-dev,
libswarm2-dev, libterraces-dev, libtfbs-perl, libvbz-hdf-plugin-dev, libxxsds-dynamic-dev,
octace-bioinfo, python-biopython-doc, python3-alignlib, python3-bcbio, python3-bel-resources,
python3-bioblend, python3-biopython-sql, python3-cgelib, python3-compclust, python3-conda-package-streaming,
python3-consensuscore2, python3-ctdopts, python3-galaxy-lib, python3-intake, python3-joypy,
python3-misopy, python3-ncls, python3-networkx, python3-pycosat, python3-pyflow,
python3-roadrunner, python3-scanpy, python3-seqcluster, q2-alignment, q2-composition,
q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier,
q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata,
q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-shogun,
q2-taxa, q2-types, q2-vsearch, q2cli, q2cwl, q2lint, q2templates, qiime, r-bioc-affxparser,
r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, r-bioc-annotate, r-bioc-annotationdbi,
r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-arrayexpress, r-bioc-biocgenerics,
r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, r-bioc-biovizbase,
r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap,
r-bioc-ctc, r-bioc-cummerbund, r-bioc-dada2, r-bioc-deseq, r-bioc-deseq2, r-bioc-dnacopy,
r-bioc-ebseq, r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter,
r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges,
r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, r-bioc-gseabase, r-bioc-gsva, r-bioc-gviz,
r-bioc-hypergraph, r-bioc-impute, r-bioc-iranges, r-bioc-limma, r-bioc-makecdfenv,
r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment,
r-bioc-nanostringqcpro, r-bioc-oligo, r-bioc-oligoclasses, r-bioc-org.hs.eg.db,
r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, r-bioc-purecn, r-bioc-qusage,
r-bioc-rbgl, r-bioc-rentrez, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors,
r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, r-bioc-structuralvariantannotation,
r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximport, r-bioc-variantannotation,
r-bioc-xvector, r-cran-adegenet, r-cran-adephylo, r-cran-amap, r-cran-biwt, r-cran-drinsight,
r-cran-dt, r-cran-dynamictreecut, r-cran-fastcluster, r-cran-future.apply, r-cran-future.batchtools,
r-cran-ica, r-cran-itertools, r-cran-kaos, r-cran-metap, r-cran-minerva, r-cran-natserv,
r-cran-nmf, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pcapp, r-cran-proc,
r-cran-rann, r-cran-rcpphnsw, r-cran-robustrankaggreg, r-cran-rocr, r-cran-rook,
r-cran-rsvd, r-cran-shazam, r-cran-sitmo, r-cran-venndiagram, r-other-apmswapp,
ruby-rgfa, vdjtools
Version: 3.8.1
srcpkg_name: debian-med
srcpkg_version: 3.8.1