sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-02.freexian.com
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| tandem-mass 1:201702011-1 (arm64) Mon, 18 Nov 2024 16:45:34 +0000 |
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Package: tandem-mass
Version: 1:201702011-1
Source Version: 1:201702011-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.hU0M_rKyfd...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-6m68c8c_/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/tandem-mass-nm1bqH/resolver-3aNUMR' with '<<RESOLVERDIR>>'
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Get:1 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ InRelease
Ign:1 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ InRelease
Get:2 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ Release [606 B]
Get:2 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ Release [606 B]
Get:3 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ Release.gpg
Ign:3 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ Release.gpg
Get:4 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ Packages [9246 B]
Get:5 http://deb.debian.org/debian sid InRelease [202 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9956 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4906 kB]
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The following packages will be upgraded:
apt bsdextrautils bsdutils debianutils diffstat dpkg dpkg-dev
libapt-pkg6.0t64 libaudit-common libaudit1 libblkid1 libbrotli1 libcap-ng0
libdpkg-perl libglib2.0-0t64 libmarkdown2 libmount1 libpcre2-8-0 libseccomp2
libselinux1 libsemanage2 libsmartcols1 libsystemd0 libudev1 libuuid1 libxml2
login login.defs mount passwd util-linux
31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 9307 kB/12.8 MB of archives.
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Get:1 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:3 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libsystemd0 arm64 257~rc2-3 [416 kB]
Get:6 file:/build/tandem-mass-nm1bqH/resolver-sA0ASy/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libudev1 arm64 257~rc2-3 [139 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-4 [243 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 login.defs all 1:4.16.0-5 [185 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 passwd arm64 1:4.16.0-5 [1210 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 diffstat arm64 1.67-1 [32.6 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
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+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-6m68c8c_/tandem-mass_201702011-1.dsc exists in /tmp/debusine-fetch-exec-upload-6m68c8c_; copying to chroot
I: NOTICE: Log filtering will replace 'build/tandem-mass-nm1bqH/tandem-mass-201702011' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tandem-mass-nm1bqH' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9.20151219), dpkg-dev (>= 1.16.1~), libexpat1-dev (>= 2.0.1), build-essential, fakeroot
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dpkg-deb: warning: root directory has unusual owner or group 998:999.
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dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
liblsan0 libmpc3 libmpfr6 libstdc++-14-dev libtool libtsan2 libubsan1
linux-libc-dev m4 po-debconf rpcsvc-proto
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make gcc-14-doc gcc-multilib manpages-dev flex bison gdb
gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc libstdc++-14-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
Recommended packages:
manpages manpages-dev libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
liblsan0 libmpc3 libmpfr6 libstdc++-14-dev libtool libtsan2 libubsan1
linux-libc-dev m4 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy
0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded.
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Setting up gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up gcc-14 (14.2.0-8) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-8) ...
Setting up libtool (2.4.7-8) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
Setting up debhelper (13.20) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.9-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.11 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.67-1 diffutils_1:3.10-1+b1 dpkg_1.22.12~1.gbp82cafd dpkg-dev_1.22.12~1.gbp82cafd dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-aarch64-linux-gnu_14.2.0-8 gcc-14-base_14.2.0-8 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libuuid1_2.40.2-11 libvariable-magic-perl_0.64-1+b1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxmlb2_0.3.21-1 libxs-parse-keyword-perl_0.46-1+b1 libxxhash0_0.8.2-2+b2 libyaml-0-2_0.2.5-1+b2 libyaml-libyaml-perl_0.902.0+ds-2+b1 libzstd1_1.5.6+dfsg-1+b1 lintian_2.120.0 linux-libc-dev_6.11.9-1 login_1:4.16.0-2+really2.40.2-11 login.defs_1:4.16.0-5 logsave_1.47.1-1+b1 lzop_1.04-2+b1 m4_1.4.19-4 make_4.3-4.1+b1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mount_2.40.2-11 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 netbase_6.4 openssl_3.3.2-2 openssl-provider-legacy_3.3.2-2 passwd_1:4.16.0-5 patch_2.7.6-7+b1 patchutils_0.4.2-1+b1 perl_5.40.0-7 perl-base_5.40.0-7 perl-modules-5.40_5.40.0-7 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.24 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4+b1 tar_1.35+dfsg-3+b1 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28+b1 util-linux_2.40.2-11 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: tandem-mass
Binary: tandem-mass
Architecture: any
Version: 1:201702011-1
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Homepage: http://www.thegpm.org/TANDEM/
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/debichem-team/tandem-mass.git
Vcs-Git: https://salsa.debian.org/debichem-team/tandem-mass.git
Build-Depends: debhelper (>= 9.20151219), dpkg-dev (>= 1.16.1~), libexpat1-dev (>= 2.0.1)
Package-List:
tandem-mass deb science optional arch=any
Checksums-Sha1:
f91dbc532612bf55a8b18c403d6e68628f8adb11 2665884 tandem-mass_201702011.orig.tar.gz
acb136a7561bcf48fd0d4cecc3d8d8dacd0cc8c8 13900 tandem-mass_201702011-1.debian.tar.xz
Checksums-Sha256:
073f50fd86d11bdb4fcd4811fc8245516ec81ab4e13a6ecef37792d684247ae8 2665884 tandem-mass_201702011.orig.tar.gz
7bce4e25599a224baafcb9afb010eb79f7b8a22a4cde3f3fa5ad2fccdd8ae540 13900 tandem-mass_201702011-1.debian.tar.xz
Files:
901c94dc228f51124ed60cbcfa97da4b 2665884 tandem-mass_201702011.orig.tar.gz
07feb5f8792050b987e676b2df7bbeeb 13900 tandem-mass_201702011-1.debian.tar.xz
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gpgv: Signature made Sun Nov 18 08:20:14 2018 UTC
gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./tandem-mass_201702011-1.dsc: no acceptable signature found
dpkg-source: info: extracting tandem-mass in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tandem-mass_201702011.orig.tar.gz
dpkg-source: info: unpacking tandem-mass_201702011-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-makefile
dpkg-source: info: applying fix-missing-include-string-h
dpkg-source: info: applying nullptr-fixes
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package tandem-mass
dpkg-buildpackage: info: source version 1:201702011-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Filippo Rusconi <lopippo@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh_testdir
dh_testroot
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use)
rm -f -- debian/tandem-mass.substvars debian/files
rm -fr -- debian/tandem-mass/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
rm -f bin/tandem
rm -f src/*.d src/*.o
rm -f build-stamp
debian/rules binary
dh_testdir
dh_prep
rm -f -- debian/tandem-mass.substvars
rm -fr -- debian/.debhelper/generated/tandem-mass/ debian/tandem-mass/ debian/tmp/
dh_auto_build --sourcedirectory=src --buildsystem=makefile -- -f Makefile_ubuntu
dh_auto_build: warning: Compatibility levels before 10 are deprecated (level 9 in use)
cd src && make -j1 -f Makefile_ubuntu
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -M -g -w -O2 xmltaxonomy.cpp > xmltaxonomy.d
g++ -M -g -w -O2 xmltaxonomy.cpp | sed s/\\.o/.d/ > xmltaxonomy.d
g++ -M -g -w -O2 xmlparameter.cpp > xmlparameter.d
g++ -M -g -w -O2 xmlparameter.cpp | sed s/\\.o/.d/ > xmlparameter.d
g++ -M -g -w -O2 tandem.cpp > tandem.d
g++ -M -g -w -O2 tandem.cpp | sed s/\\.o/.d/ > tandem.d
g++ -M -g -w -O2 stdafx.cpp > stdafx.d
g++ -M -g -w -O2 stdafx.cpp | sed s/\\.o/.d/ > stdafx.d
g++ -M -g -w -O2 saxtaxhandler.cpp > saxtaxhandler.d
g++ -M -g -w -O2 saxtaxhandler.cpp | sed s/\\.o/.d/ > saxtaxhandler.d
g++ -M -g -w -O2 saxtandeminputhandler.cpp > saxtandeminputhandler.d
g++ -M -g -w -O2 saxtandeminputhandler.cpp | sed s/\\.o/.d/ > saxtandeminputhandler.d
g++ -M -g -w -O2 saxsaphandler.cpp > saxsaphandler.d
g++ -M -g -w -O2 saxsaphandler.cpp | sed s/\\.o/.d/ > saxsaphandler.d
g++ -M -g -w -O2 saxmzxmlhandler.cpp > saxmzxmlhandler.d
g++ -M -g -w -O2 saxmzxmlhandler.cpp | sed s/\\.o/.d/ > saxmzxmlhandler.d
g++ -M -g -w -O2 saxmzmlhandler.cpp > saxmzmlhandler.d
g++ -M -g -w -O2 saxmzmlhandler.cpp | sed s/\\.o/.d/ > saxmzmlhandler.d
g++ -M -g -w -O2 saxmzdatahandler.cpp > saxmzdatahandler.d
g++ -M -g -w -O2 saxmzdatahandler.cpp | sed s/\\.o/.d/ > saxmzdatahandler.d
g++ -M -g -w -O2 saxmodhandler.cpp > saxmodhandler.d
g++ -M -g -w -O2 saxmodhandler.cpp | sed s/\\.o/.d/ > saxmodhandler.d
g++ -M -g -w -O2 saxhandler.cpp > saxhandler.d
g++ -M -g -w -O2 saxhandler.cpp | sed s/\\.o/.d/ > saxhandler.d
g++ -M -g -w -O2 saxgamlhandler.cpp > saxgamlhandler.d
g++ -M -g -w -O2 saxgamlhandler.cpp | sed s/\\.o/.d/ > saxgamlhandler.d
g++ -M -g -w -O2 saxbiomlhandler.cpp > saxbiomlhandler.d
g++ -M -g -w -O2 saxbiomlhandler.cpp | sed s/\\.o/.d/ > saxbiomlhandler.d
g++ -M -g -w -O2 p3msequenceserver.cpp > p3msequenceserver.d
g++ -M -g -w -O2 p3msequenceserver.cpp | sed s/\\.o/.d/ > p3msequenceserver.d
g++ -M -g -w -O2 p3mprocess.cpp > p3mprocess.d
g++ -M -g -w -O2 p3mprocess.cpp | sed s/\\.o/.d/ > p3mprocess.d
g++ -M -g -w -O2 p3.cpp > p3.d
g++ -M -g -w -O2 p3.cpp | sed s/\\.o/.d/ > p3.d
g++ -M -g -w -O2 mzid_report.cpp > mzid_report.d
g++ -M -g -w -O2 mzid_report.cpp | sed s/\\.o/.d/ > mzid_report.d
g++ -M -g -w -O2 mxxcleavage.cpp > mxxcleavage.d
g++ -M -g -w -O2 mxxcleavage.cpp | sed s/\\.o/.d/ > mxxcleavage.d
g++ -M -g -w -O2 mtermmods.cpp > mtermmods.d
g++ -M -g -w -O2 mtermmods.cpp | sed s/\\.o/.d/ > mtermmods.d
g++ -M -g -w -O2 mspectrumcondition.cpp > mspectrumcondition.d
g++ -M -g -w -O2 mspectrumcondition.cpp | sed s/\\.o/.d/ > mspectrumcondition.d
g++ -M -g -w -O2 msequtilities.cpp > msequtilities.d
g++ -M -g -w -O2 msequtilities.cpp | sed s/\\.o/.d/ > msequtilities.d
g++ -M -g -w -O2 msequenceserver.cpp > msequenceserver.d
g++ -M -g -w -O2 msequenceserver.cpp | sed s/\\.o/.d/ > msequenceserver.d
g++ -M -g -w -O2 msequencecollection.cpp > msequencecollection.d
g++ -M -g -w -O2 msequencecollection.cpp | sed s/\\.o/.d/ > msequencecollection.d
g++ -M -g -w -O2 mscore_tandem.cpp > mscore_tandem.d
g++ -M -g -w -O2 mscore_tandem.cpp | sed s/\\.o/.d/ > mscore_tandem.d
g++ -M -g -w -O2 mscore.cpp > mscore.d
g++ -M -g -w -O2 mscore.cpp | sed s/\\.o/.d/ > mscore.d
g++ -M -g -w -O2 mreport.cpp > mreport.d
g++ -M -g -w -O2 mreport.cpp | sed s/\\.o/.d/ > mreport.d
g++ -M -g -w -O2 mrefine.cpp > mrefine.d
g++ -M -g -w -O2 mrefine.cpp | sed s/\\.o/.d/ > mrefine.d
g++ -M -g -w -O2 mprocess.cpp > mprocess.d
g++ -M -g -w -O2 mprocess.cpp | sed s/\\.o/.d/ > mprocess.d
g++ -M -g -w -O2 mpmods.cpp > mpmods.d
g++ -M -g -w -O2 mpmods.cpp | sed s/\\.o/.d/ > mpmods.d
g++ -M -g -w -O2 mplugin.cpp > mplugin.d
g++ -M -g -w -O2 mplugin.cpp | sed s/\\.o/.d/ > mplugin.d
g++ -M -g -w -O2 mpam.cpp > mpam.d
g++ -M -g -w -O2 mpam.cpp | sed s/\\.o/.d/ > mpam.d
g++ -M -g -w -O2 mbiomlreport.cpp > mbiomlreport.d
g++ -M -g -w -O2 mbiomlreport.cpp | sed s/\\.o/.d/ > mbiomlreport.d
g++ -M -g -w -O2 masscalc.cpp > masscalc.d
g++ -M -g -w -O2 masscalc.cpp | sed s/\\.o/.d/ > masscalc.d
g++ -M -g -w -O2 loadmspectrum.cpp > loadmspectrum.d
g++ -M -g -w -O2 loadmspectrum.cpp | sed s/\\.o/.d/ > loadmspectrum.d
g++ -M -g -w -O2 base64.cpp > base64.d
g++ -M -g -w -O2 base64.cpp | sed s/\\.o/.d/ > base64.d
g++ -M -g -w -O2 MSNumpress.cpp > MSNumpress.d
g++ -M -g -w -O2 MSNumpress.cpp | sed s/\\.o/.d/ > MSNumpress.d
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o MSNumpress.o MSNumpress.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o base64.o base64.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadmspectrum.o loadmspectrum.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o masscalc.o masscalc.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbiomlreport.o mbiomlreport.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mpam.o mpam.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mplugin.o mplugin.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mpmods.o mpmods.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mprocess.o mprocess.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mrefine.o mrefine.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mreport.o mreport.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mscore.o mscore.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mscore_tandem.o mscore_tandem.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequencecollection.o msequencecollection.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequenceserver.o msequenceserver.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msequtilities.o msequtilities.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mspectrumcondition.o mspectrumcondition.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mtermmods.o mtermmods.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mxxcleavage.o mxxcleavage.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mzid_report.o mzid_report.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3.o p3.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3mprocess.o p3mprocess.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p3msequenceserver.o p3msequenceserver.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxbiomlhandler.o saxbiomlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxgamlhandler.o saxgamlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxhandler.o saxhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmodhandler.o saxmodhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzdatahandler.o saxmzdatahandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzmlhandler.o saxmzmlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxmzxmlhandler.o saxmzxmlhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxsaphandler.o saxsaphandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxtandeminputhandler.o saxtandeminputhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o saxtaxhandler.o saxtaxhandler.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdafx.o stdafx.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tandem.o tandem.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xmlparameter.o xmlparameter.cpp
g++ -g -w -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xmltaxonomy.o xmltaxonomy.cpp
g++ -g -w -O2 -o ../bin/tandem MSNumpress.o base64.o loadmspectrum.o masscalc.o mbiomlreport.o mpam.o mplugin.o mpmods.o mprocess.o mrefine.o mreport.o mscore.o mscore_tandem.o msequencecollection.o msequenceserver.o msequtilities.o mspectrumcondition.o mtermmods.o mxxcleavage.o mzid_report.o p3.o p3mprocess.o p3msequenceserver.o saxbiomlhandler.o saxgamlhandler.o saxhandler.o saxmodhandler.o saxmzdatahandler.o saxmzmlhandler.o saxmzxmlhandler.o saxsaphandler.o saxtandeminputhandler.o saxtaxhandler.o stdafx.o tandem.o xmlparameter.o xmltaxonomy.o -lpthread -L/usr/lib -lm -lexpat
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
touch build-stamp
dh_testdir
dh_testroot
dh_installchangelogs
dh_installchangelogs: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/share/doc/tandem-mass
install -p -m0644 debian/.debhelper/generated/tandem-mass/dh_installchangelogs.dch.trimmed debian/tandem-mass/usr/share/doc/tandem-mass/changelog.Debian
dh_installdocs
dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -p -m0644 debian/copyright debian/tandem-mass/usr/share/doc/tandem-mass/copyright
dh_installexamples
dh_installexamples: warning: Compatibility levels before 10 are deprecated (level 9 in use)
dh_install
dh_install: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/bin
cp --reflink=auto -a ./bin/tandem debian/tandem-mass/usr/bin/
dh_installman
dh_installman: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/share/man/man1/
install -p -m0644 ./debian/tandem.1 debian/tandem-mass/usr/share/man/man1/tandem.1
man-recode --to-code UTF-8 --suffix .dh-new debian/tandem-mass/usr/share/man/man1/tandem.1
mv debian/tandem-mass/usr/share/man/man1/tandem.1.dh-new debian/tandem-mass/usr/share/man/man1/tandem.1
chmod 0644 -- debian/tandem-mass/usr/share/man/man1/tandem.1
dh_lintian
dh_lintian: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/usr/share/lintian/overrides
install -p -m0644 debian/tandem-mass.lintian-overrides debian/tandem-mass/usr/share/lintian/overrides/tandem-mass
dh_strip -a
dh_strip: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48
objcopy --only-keep-debug --compress-debug-sections debian/tandem-mass/usr/bin/tandem debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48/621268480367c9f10b8b6be40dff169779139f.debug
chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48/621268480367c9f10b8b6be40dff169779139f.debug
strip --remove-section=.comment --remove-section=.note debian/tandem-mass/usr/bin/tandem
objcopy --add-gnu-debuglink debian/.debhelper/tandem-mass/dbgsym-root/usr/lib/debug/.build-id/48/621268480367c9f10b8b6be40dff169779139f.debug debian/tandem-mass/usr/bin/tandem
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/usr/share/doc
ln -s tandem-mass debian/.debhelper/tandem-mass/dbgsym-root/usr/share/doc/tandem-mass-dbgsym
install -m0755 -d debian/.debhelper/tandem-mass
dh_compress
dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use)
cd debian/tandem-mass
chmod a-x usr/share/doc/tandem-mass/changelog.Debian usr/share/man/man1/tandem.1
gzip -9nf usr/share/doc/tandem-mass/changelog.Debian usr/share/man/man1/tandem.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms
find debian/tandem-mass ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/tandem-mass/usr/share/doc -type f -a -true -a ! -regex 'debian/tandem-mass/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tandem-mass/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/tandem-mass/usr/share/man debian/tandem-mass/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tandem-mass -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tandem-mass/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_installdeb
dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/DEBIAN
dh_shlibdeps
dh_shlibdeps: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/DEBIAN
dpkg-shlibdeps -Tdebian/tandem-mass.substvars debian/tandem-mass/usr/bin/tandem
dh_gencontrol
dh_gencontrol: warning: Compatibility levels before 10 are deprecated (level 9 in use)
install -m0755 -d debian/tandem-mass/DEBIAN
echo misc:Depends= >> debian/tandem-mass.substvars
echo misc:Pre-Depends= >> debian/tandem-mass.substvars
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN
dpkg-gencontrol -ptandem-mass -ldebian/changelog -Tdebian/tandem-mass.substvars -cdebian/control -Pdebian/.debhelper/tandem-mass/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tandem-mass-dbgsym "-DDepends=tandem-mass (= \${binary:Version})" "-DDescription=debug symbols for tandem-mass" -DBuild-Ids=48621268480367c9f10b8b6be40dff169779139f -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ptandem-mass -ldebian/changelog -Tdebian/tandem-mass.substvars -cdebian/control -Pdebian/tandem-mass
chmod 0644 -- debian/tandem-mass/DEBIAN/control
dh_md5sums
install -m0755 -d debian/tandem-mass/DEBIAN
cd debian/tandem-mass >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/tandem-mass/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN
cd debian/.debhelper/tandem-mass/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/tandem-mass/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --root-owner-group --build debian/tandem-mass ..
dpkg-deb --root-owner-group --build debian/.debhelper/tandem-mass/dbgsym-root ..
dpkg-deb: building package 'tandem-mass' in '../tandem-mass_201702011-1_arm64.deb'.
dpkg-deb: building package 'tandem-mass-dbgsym' in '../tandem-mass-dbgsym_201702011-1_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../tandem-mass_201702011-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../tandem-mass_201702011-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-18T16:47:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tandem-mass_201702011-1_arm64.changes:
--------------------------------------
Format: 1.8
Date: Sun, 18 Nov 2018 09:00:11 +0100
Source: tandem-mass
Binary: tandem-mass tandem-mass-dbgsym
Architecture: arm64
Version: 1:201702011-1
Distribution: sid
Urgency: low
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Changed-By: Filippo Rusconi <lopippo@debian.org>
Description:
tandem-mass - mass spectrometry software for protein identification
Changes:
tandem-mass (1:201702011-1) unstable; urgency=low
.
* Exactly same package as the previous one that could not be uploaded
because the package version number was not greater than the former NMU one
(of version 1:20170201-0.1).
Checksums-Sha1:
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ba0a1d00844127ecd92fa8b78698df60de757e59 4979 tandem-mass_201702011-1_arm64.buildinfo
c2d3afc97256e28741cb91c1642390b4c51bbce9 189080 tandem-mass_201702011-1_arm64.deb
Checksums-Sha256:
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5928b14447d76d6577c4b7c37bafd7b946d7b8a35aff79a5d661d713ef8154d6 4979 tandem-mass_201702011-1_arm64.buildinfo
1d396924b0958a45308d2e61387f7a025171ac437f667598f59b93a51b3eb195 189080 tandem-mass_201702011-1_arm64.deb
Files:
03390b0f43aea2b1c6621fdb814f6a49 4292844 debug optional tandem-mass-dbgsym_201702011-1_arm64.deb
4de152d00303a1f354c3441082ac71ee 4979 science optional tandem-mass_201702011-1_arm64.buildinfo
1412a49bebf39ea5aae8a9ac0e01e63f 189080 science optional tandem-mass_201702011-1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: tandem-mass
Binary: tandem-mass tandem-mass-dbgsym
Architecture: arm64
Version: 1:201702011-1
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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1d396924b0958a45308d2e61387f7a025171ac437f667598f59b93a51b3eb195 189080 tandem-mass_201702011-1_arm64.deb
Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Mon, 18 Nov 2024 16:47:51 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-11),
bsdutils (= 1:2.40.2-11),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1+b1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-8),
cpp-14-aarch64-linux-gnu (= 14.2.0-8),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-9+b1),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.21),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1+b1),
dpkg (= 1.22.12~1.gbp82cafd),
dpkg-dev (= 1.22.12~1.gbp82cafd),
dwz (= 0.15-1+b1),
file (= 1:5.45-3+b1),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-8),
g++-14-aarch64-linux-gnu (= 14.2.0-8),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-8),
gcc-14-aarch64-linux-gnu (= 14.2.0-8),
gcc-14-base (= 14.2.0-8),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4+b1),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1+b1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+b1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-8),
libatomic1 (= 14.2.0-8),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.2-2),
libaudit1 (= 1:4.0.2-2),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-11),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3+b1),
libcap2 (= 1:2.66-5+b1),
libcc1-0 (= 14.2.0-8),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.273),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.12~1.gbp82cafd),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.4-1),
libexpat1-dev (= 2.6.4-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-8),
libgcc-s1 (= 14.2.0-8),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-2+b2),
libgomp1 (= 14.2.0-8),
libgprofng0 (= 2.43.1-5),
libhwasan0 (= 14.2.0-8),
libicu72 (= 72.1-5+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-8),
libjansson4 (= 2.14-2+b3),
liblsan0 (= 14.2.0-8),
liblzma5 (= 5.6.3-1+b1),
libmagic-mgc (= 1:5.45-3+b1),
libmagic1t64 (= 1:5.45-3+b1),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.2-11),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.1-1+b2),
libpam-modules (= 1.5.3-7+b1),
libpam-modules-bin (= 1.5.3-7+b1),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7+b1),
libpcre2-8-0 (= 10.44-4),
libperl5.40 (= 5.40.0-7),
libpipeline1 (= 1.5.8-1),
libseccomp2 (= 2.5.5-1+b3),
libselinux1 (= 3.7-3+b1),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-11),
libssl3t64 (= 3.3.2-2),
libstdc++-14-dev (= 14.2.0-8),
libstdc++6 (= 14.2.0-8),
libsystemd0 (= 257~rc2-3),
libtinfo6 (= 6.5-2+b1),
libtool (= 2.4.7-8),
libtsan2 (= 14.2.0-8),
libubsan1 (= 14.2.0-8),
libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257~rc2-3),
libunistring5 (= 1.2-1+b1),
libuuid1 (= 2.40.2-11),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
libzstd1 (= 1.5.6+dfsg-1+b1),
linux-libc-dev (= 6.11.9-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1+b1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2+b1),
openssl-provider-legacy (= 3.3.2-2),
patch (= 2.7.6-7+b1),
perl (= 5.40.0-7),
perl-base (= 5.40.0-7),
perl-modules-5.40 (= 5.40.0-7),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1+b1),
sed (= 4.9-2+b1),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3+b1),
util-linux (= 2.40.2-11),
xz-utils (= 5.6.3-1+b1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="parallel=16"
LANG="C.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1542528011"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tandem-mass-dbgsym_201702011-1_arm64.deb
----------------------------------------
new Debian package, version 2.0.
size 4292844 bytes: control archive=540 bytes.
386 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: tandem-mass-dbgsym
Source: tandem-mass
Version: 1:201702011-1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Installed-Size: 4296
Depends: tandem-mass (= 1:201702011-1)
Section: debug
Priority: optional
Description: debug symbols for tandem-mass
Build-Ids: 48621268480367c9f10b8b6be40dff169779139f
drwxr-xr-x root/root 0 2018-11-18 08:00 ./
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/lib/debug/.build-id/48/
-rw-r--r-- root/root 4388832 2018-11-18 08:00 ./usr/lib/debug/.build-id/48/621268480367c9f10b8b6be40dff169779139f.debug
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-11-18 08:00 ./usr/share/doc/tandem-mass-dbgsym -> tandem-mass
tandem-mass_201702011-1_arm64.deb
---------------------------------
new Debian package, version 2.0.
size 189080 bytes: control archive=1240 bytes.
1433 bytes, 29 lines control
338 bytes, 5 lines md5sums
Package: tandem-mass
Version: 1:201702011-1
Architecture: arm64
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Installed-Size: 599
Depends: libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Section: science
Priority: optional
Homepage: http://www.thegpm.org/TANDEM/
Description: mass spectrometry software for protein identification
X! Tandem can match tandem mass spectra with peptide sequences, in a
process that is commonly used to perform protein identification.
.
This software has a very simple, unsophisticated application
programming interface (API): it simply takes an XML file of
instructions on its command line, and outputs the results into an XML
file, which has been specified in the input XML file. The output file
format is described at
http://www.thegpm.org/docs/X_series_output_form.pdf.
.
Unlike some earlier generation search engines, all of the X! Series
search engines calculate statistical confidence (expectation values)
for all of the individual spectrum-to-sequence assignments. They also
reassemble all of the peptide assignments in a data set onto the
known protein sequences and assign the statistical confidence that
this assembly and alignment is non-random. The formula for which can
be found here. Therefore, separate assembly and statistical analysis
software, e.g. PeptideProphet and ProteinProphet, do not need to be
used.
drwxr-xr-x root/root 0 2018-11-18 08:00 ./
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/bin/
-rwxr-xr-x root/root 593040 2018-11-18 08:00 ./usr/bin/tandem
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/doc/tandem-mass/
-rw-r--r-- root/root 838 2018-11-18 08:00 ./usr/share/doc/tandem-mass/changelog.Debian.gz
-rw-r--r-- root/root 3322 2017-08-23 06:22 ./usr/share/doc/tandem-mass/copyright
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/lintian/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 68 2017-08-23 06:22 ./usr/share/lintian/overrides/tandem-mass
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/man/
drwxr-xr-x root/root 0 2018-11-18 08:00 ./usr/share/man/man1/
-rw-r--r-- root/root 1072 2018-11-18 08:00 ./usr/share/man/man1/tandem.1.gz
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1250 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1312 B]
Fetched 3177 B in 0s (271 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-sA0ASy/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-sA0ASy/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-sA0ASy/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-sA0ASy/apt_archive ./ Release [606 B]
Get:3 file:/<<BUILDDIR>>/resolver-sA0ASy/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-sA0ASy/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-lintian-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-lintian-dummy.
(Reading database ... 22581 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
E: tandem-mass: alien-tag no-upstream-changelog [usr/share/lintian/overrides/tandem-mass:1]
W: tandem-mass changes: distribution-and-changes-mismatch sid unstable
W: tandem-mass source: package-uses-deprecated-debhelper-compat-version 9
E: Lintian run failed (runtime error)
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 60664
Build-Time: 86
Distribution: sid
Host Architecture: arm64
Install-Time: 17
Job: /tmp/debusine-fetch-exec-upload-6m68c8c_/tandem-mass_201702011-1.dsc
Lintian: error
Machine Architecture: arm64
Package: tandem-mass
Package-Time: 138
Source-Version: 1:201702011-1
Space: 60664
Status: successful
Version: 1:201702011-1
--------------------------------------------------------------------------------
Finished at 2024-11-18T16:47:52Z
Build needed 00:02:18, 60664k disk space