SeqAn3 3.3.0
The Modern C++ library for sequence analysis.
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OP | Description |
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M | Alignment match (can be a sequence match or mismatch, used only in basic CIGAR representations) |
I | Insertion to the reference |
D | Deletion from the reference |
N | Skipped region from the reference |
S | Soft clipping (clipped sequences present in seqan3::sam_record::sequence) |
H | Hard clipping (clipped sequences NOT present in seqan3::sam_record::sequence) |
P | Padding (silent deletion from padded reference) |
= | Sequence match |
X | Sequence mismatch |