SeqAn3
3.3.0
The Modern C++ library for sequence analysis.
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Here is a list of all documented class members with links to the class documentation for each member:
- c -
c_str() :
seqan3::small_string< capacity_ >
callback :
seqan3::align_cfg::on_result< callback_t >
,
seqan3::search_cfg::on_result< callback_t >
capacity() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::small_string< capacity_ >
,
seqan3::small_vector< value_type_, capacity_ >
case_insensitive_string_ends_with() :
seqan3::file_validator_base
cbegin() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::gap_decorator< inner_type >
,
seqan3::small_vector< value_type_, capacity_ >
cend() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::gap_decorator< inner_type >
,
seqan3::small_vector< value_type_, capacity_ >
char_is_valid() :
seqan3::alphabet_proxy< derived_type, alphabet_type >
,
seqan3::alphabet_variant< alternative_types >
,
seqan3::aminoacid_base< derived_type, size >
,
seqan3::nucleotide_base< derived_type, size >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
,
seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
,
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
char_to_rank :
seqan3::masked< sequence_alphabet_t >
char_type() :
input_stream_over
,
output_stream_over
,
seqan3::alphabet_base< derived_type, size, char_t >
,
seqan3::masked< sequence_alphabet_t >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
,
seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
,
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
,
seqan3::wuss< SIZE >
cigar() :
seqan3::cigar
cigar_operation() :
seqan3::exposition_only::cigar_operation
cigar_sequence() :
seqan3::sam_record< field_types, field_ids >
cigar_type :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
citation :
seqan3::argument_parser_meta_data
clear() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::interleaved_bloom_filter< data_layout_mode_ >
,
seqan3::record< field_types, field_ids >
,
seqan3::small_string< capacity_ >
,
seqan3::small_vector< value_type_, capacity_ >
command_line_call :
seqan3::sam_file_program_info_t
comment_alphabet :
seqan3::structure_file_input_default_traits_rna
,
structure_file_input_traits
comment_container :
seqan3::structure_file_input_default_traits_rna
,
structure_file_input_traits
comment_type :
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
comments :
seqan3::sam_file_header< ref_ids_type >
complement() :
seqan3::alphabet_proxy< derived_type, alphabet_type >
,
seqan3::dna4
,
seqan3::nucleotide_base< derived_type, size >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
,
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
concat() :
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
concat_capacity() :
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
concat_reserve() :
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
concat_size() :
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
concatenated_sequences() :
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
configuration() :
seqan3::configuration< configs_t >
const_iterator :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::small_vector< value_type_, capacity_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
const_reference :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::gap_decorator< inner_type >
,
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::small_vector< value_type_, capacity_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
contains() :
seqan3::bloom_filter< data_layout_mode_ >
convert_to() :
seqan3::alphabet_variant< alternative_types >
convert_unsafely_to() :
seqan3::alphabet_variant< alternative_types >
count() :
seqan3::bi_fm_index_cursor< index_t >
,
seqan3::bloom_filter< data_layout_mode_ >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::fm_index_cursor< index_t >
counting_agent() :
seqan3::interleaved_bloom_filter< data_layout_mode_ >
counting_agent_type() :
seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
counting_vector() :
seqan3::counting_vector< value_t >
cursor() :
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
cursor_type :
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
cycle_back() :
seqan3::bi_fm_index_cursor< index_t >
,
seqan3::fm_index_cursor< index_t >
cycle_front() :
seqan3::bi_fm_index_cursor< index_t >
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