SeqAn3
3.3.0
The Modern C++ library for sequence analysis.
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Here is a list of all documented typedefs with links to the class documentation for each member:
- s -
sam_tag_type_t :
seqan3::sam_tag_type< tag_value >
score_type :
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
selected_field_ids :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
sentinel :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
seq_alphabet :
seqan3::structure_file_input_default_traits_aa
,
seqan3::structure_file_input_default_traits_rna
seq_container :
seqan3::structure_file_input_default_traits_rna
seq_legal_alphabet :
seqan3::structure_file_input_default_traits_aa
,
seqan3::structure_file_input_default_traits_rna
seq_type :
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sequence_alphabet :
seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >
,
seqan3::sequence_file_input_default_traits_aa
,
seqan3::sequence_file_input_default_traits_dna
sequence_alphabet_type :
seqan3::masked< sequence_alphabet_t >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
,
seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
,
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
sequence_container :
seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >
,
seqan3::sequence_file_input_default_traits_dna
sequence_file_input_options_type :
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sequence_legal_alphabet :
seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >
,
seqan3::sequence_file_input_default_traits_aa
,
seqan3::sequence_file_input_default_traits_dna
sequence_type :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
size_type :
seqan3::aligned_allocator< value_t, alignment_v >
,
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::bi_fm_index_cursor< index_t >
,
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::fm_index_cursor< index_t >
,
seqan3::gap_decorator< inner_type >
,
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::small_vector< value_type_, capacity_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
stream_char_type :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
structure_alphabet :
seqan3::structure_file_input_default_traits_aa
,
seqan3::structure_file_input_default_traits_rna
structure_alphabet_type :
seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
,
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
structure_container :
seqan3::structure_file_input_default_traits_rna
structure_type :
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
structured_seq_alphabet :
seqan3::structure_file_input_default_traits_aa
,
seqan3::structure_file_input_default_traits_rna
structured_seq_container :
seqan3::structure_file_input_default_traits_rna
structured_seq_type :
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
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