deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), python3 (<< 3.14),
python3 (>= 3.12~), python3-bioframe, python3-click, python3-numpy (>= 1:1.25.0),
python3-numpy-abi9, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-scipy,
python3-yaml, python3:any
Description: |-
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Homepage: https://github.com/mirnylab/pairtools
Installed-Size: '1266'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-pairtools
Priority: optional
Section: python
Source: pairtools
Suggests: python3-pairtools-examples (>= 1.0.2)
Version: 1.1.0-1
srcpkg_name: pairtools
srcpkg_version: 1.1.0-1