Artifact macromoleculebuilder_4.0.0+dfsg-4_arm64-2024-11-23T10:27:59Z

Metadata
bd_uninstallable: null
filename: macromoleculebuilder_4.0.0+dfsg-4_arm64-2024-11-23T10:27:59Z.build
source: macromoleculebuilder
version: 4.0.0+dfsg-4

File

macromoleculebuilder_4.0.0+dfsg-4_arm64-2024-11-23T10:27:59Z.build
   1
   2
   3
   4
   5
   6
   7
   8
   9
  10
  11
  12
  13
  14
  15
  16
  17
  18
  19
  20
  21
  22
  23
  24
  25
  26
  27
  28
  29
  30
  31
  32
  33
  34
  35
  36
  37
  38
  39
  40
  41
  42
  43
  44
  45
  46
  47
  48
  49
  50
  51
  52
  53
  54
  55
  56
  57
  58
  59
  60
  61
  62
  63
  64
  65
  66
  67
  68
  69
  70
  71
  72
  73
  74
  75
  76
  77
  78
  79
  80
  81
  82
  83
  84
  85
  86
  87
  88
  89
  90
  91
  92
  93
  94
  95
  96
  97
  98
  99
 100
 101
 102
 103
 104
 105
 106
 107
 108
 109
 110
 111
 112
 113
 114
 115
 116
 117
 118
 119
 120
 121
 122
 123
 124
 125
 126
 127
 128
 129
 130
 131
 132
 133
 134
 135
 136
 137
 138
 139
 140
 141
 142
 143
 144
 145
 146
 147
 148
 149
 150
 151
 152
 153
 154
 155
 156
 157
 158
 159
 160
 161
 162
 163
 164
 165
 166
 167
 168
 169
 170
 171
 172
 173
 174
 175
 176
 177
 178
 179
 180
 181
 182
 183
 184
 185
 186
 187
 188
 189
 190
 191
 192
 193
 194
 195
 196
 197
 198
 199
 200
 201
 202
 203
 204
 205
 206
 207
 208
 209
 210
 211
 212
 213
 214
 215
 216
 217
 218
 219
 220
 221
 222
 223
 224
 225
 226
 227
 228
 229
 230
 231
 232
 233
 234
 235
 236
 237
 238
 239
 240
 241
 242
 243
 244
 245
 246
 247
 248
 249
 250
 251
 252
 253
 254
 255
 256
 257
 258
 259
 260
 261
 262
 263
 264
 265
 266
 267
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279
 280
 281
 282
 283
 284
 285
 286
 287
 288
 289
 290
 291
 292
 293
 294
 295
 296
 297
 298
 299
 300
 301
 302
 303
 304
 305
 306
 307
 308
 309
 310
 311
 312
 313
 314
 315
 316
 317
 318
 319
 320
 321
 322
 323
 324
 325
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336
 337
 338
 339
 340
 341
 342
 343
 344
 345
 346
 347
 348
 349
 350
 351
 352
 353
 354
 355
 356
 357
 358
 359
 360
 361
 362
 363
 364
 365
 366
 367
 368
 369
 370
 371
 372
 373
 374
 375
 376
 377
 378
 379
 380
 381
 382
 383
 384
 385
 386
 387
 388
 389
 390
 391
 392
 393
 394
 395
 396
 397
 398
 399
 400
 401
 402
 403
 404
 405
 406
 407
 408
 409
 410
 411
 412
 413
 414
 415
 416
 417
 418
 419
 420
 421
 422
 423
 424
 425
 426
 427
 428
 429
 430
 431
 432
 433
 434
 435
 436
 437
 438
 439
 440
 441
 442
 443
 444
 445
 446
 447
 448
 449
 450
 451
 452
 453
 454
 455
 456
 457
 458
 459
 460
 461
 462
 463
 464
 465
 466
 467
 468
 469
 470
 471
 472
 473
 474
 475
 476
 477
 478
 479
 480
 481
 482
 483
 484
 485
 486
 487
 488
 489
 490
 491
 492
 493
 494
 495
 496
 497
 498
 499
 500
 501
 502
 503
 504
 505
 506
 507
 508
 509
 510
 511
 512
 513
 514
 515
 516
 517
 518
 519
 520
 521
 522
 523
 524
 525
 526
 527
 528
 529
 530
 531
 532
 533
 534
 535
 536
 537
 538
 539
 540
 541
 542
 543
 544
 545
 546
 547
 548
 549
 550
 551
 552
 553
 554
 555
 556
 557
 558
 559
 560
 561
 562
 563
 564
 565
 566
 567
 568
 569
 570
 571
 572
 573
 574
 575
 576
 577
 578
 579
 580
 581
 582
 583
 584
 585
 586
 587
 588
 589
 590
 591
 592
 593
 594
 595
 596
 597
 598
 599
 600
 601
 602
 603
 604
 605
 606
 607
 608
 609
 610
 611
 612
 613
 614
 615
 616
 617
 618
 619
 620
 621
 622
 623
 624
 625
 626
 627
 628
 629
 630
 631
 632
 633
 634
 635
 636
 637
 638
 639
 640
 641
 642
 643
 644
 645
 646
 647
 648
 649
 650
 651
 652
 653
 654
 655
 656
 657
 658
 659
 660
 661
 662
 663
 664
 665
 666
 667
 668
 669
 670
 671
 672
 673
 674
 675
 676
 677
 678
 679
 680
 681
 682
 683
 684
 685
 686
 687
 688
 689
 690
 691
 692
 693
 694
 695
 696
 697
 698
 699
 700
 701
 702
 703
 704
 705
 706
 707
 708
 709
 710
 711
 712
 713
 714
 715
 716
 717
 718
 719
 720
 721
 722
 723
 724
 725
 726
 727
 728
 729
 730
 731
 732
 733
 734
 735
 736
 737
 738
 739
 740
 741
 742
 743
 744
 745
 746
 747
 748
 749
 750
 751
 752
 753
 754
 755
 756
 757
 758
 759
 760
 761
 762
 763
 764
 765
 766
 767
 768
 769
 770
 771
 772
 773
 774
 775
 776
 777
 778
 779
 780
 781
 782
 783
 784
 785
 786
 787
 788
 789
 790
 791
 792
 793
 794
 795
 796
 797
 798
 799
 800
 801
 802
 803
 804
 805
 806
 807
 808
 809
 810
 811
 812
 813
 814
 815
 816
 817
 818
 819
 820
 821
 822
 823
 824
 825
 826
 827
 828
 829
 830
 831
 832
 833
 834
 835
 836
 837
 838
 839
 840
 841
 842
 843
 844
 845
 846
 847
 848
 849
 850
 851
 852
 853
 854
 855
 856
 857
 858
 859
 860
 861
 862
 863
 864
 865
 866
 867
 868
 869
 870
 871
 872
 873
 874
 875
 876
 877
 878
 879
 880
 881
 882
 883
 884
 885
 886
 887
 888
 889
 890
 891
 892
 893
 894
 895
 896
 897
 898
 899
 900
 901
 902
 903
 904
 905
 906
 907
 908
 909
 910
 911
 912
 913
 914
 915
 916
 917
 918
 919
 920
 921
 922
 923
 924
 925
 926
 927
 928
 929
 930
 931
 932
 933
 934
 935
 936
 937
 938
 939
 940
 941
 942
 943
 944
 945
 946
 947
 948
 949
 950
 951
 952
 953
 954
 955
 956
 957
 958
 959
 960
 961
 962
 963
 964
 965
 966
 967
 968
 969
 970
 971
 972
 973
 974
 975
 976
 977
 978
 979
 980
 981
 982
 983
 984
 985
 986
 987
 988
 989
 990
 991
 992
 993
 994
 995
 996
 997
 998
 999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517
2518
2519
2520
2521
2522
2523
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-08.freexian.com

+==============================================================================+
| macromoleculebuilder 4.0.0+dfsg-4 (arm64)    Sat, 23 Nov 2024 10:27:59 +0000 |
+==============================================================================+

Package: macromoleculebuilder
Version: 4.0.0+dfsg-4
Source Version: 4.0.0+dfsg-4
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary

I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/1053884/system.tar.xz to /tmp/tmp.sbuild.PUwLZjf1_4...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


rm -f /etc/resolv.conf
----------------------


I: Finished running 'rm -f /etc/resolv.conf'.

Finished processing commands.
--------------------------------------------------------------------------------
Copying /tmp/debusine-fetch-exec-upload-792_jyht/seqan-apps-dbgsym_2.5.0~rc3+dfsg-1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-792_jyht/seqan-apps_2.5.0~rc3+dfsg-1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-792_jyht/libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-Ulk13U/resolver-B3UTlR' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ InRelease
Ign:1 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ InRelease
Get:2 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ Release [606 B]
Get:4 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ Release.gpg
Ign:4 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ Release.gpg
Get:5 file:/build/macromoleculebuilder-Ulk13U/resolver-sZviEM/apt_archive ./ Packages [4687 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9958 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4913 kB]
Fetched 15.1 MB in 2s (6312 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt base-files libapt-pkg6.0t64 libxml-sax-perl
4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 2411 kB of archives.
After this operation, 206 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main arm64 base-files arm64 13.6 [72.9 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.14 [969 kB]
Get:3 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.14 [1316 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 2411 kB in 0s (28.4 MB/s)
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17119 files and directories currently installed.)
Preparing to unpack .../base-files_13.6_arm64.deb ...
Unpacking base-files (13.6) over (13.5) ...
Setting up base-files (13.6) ...
Updating /root/.profile to current default.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17119 files and directories currently installed.)
Preparing to unpack .../libapt-pkg6.0t64_2.9.14_arm64.deb ...
Unpacking libapt-pkg6.0t64:arm64 (2.9.14) over (2.9.12) ...
Setting up libapt-pkg6.0t64:arm64 (2.9.14) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17119 files and directories currently installed.)
Preparing to unpack .../archives/apt_2.9.14_arm64.deb ...
Unpacking apt (2.9.14) over (2.9.12) ...
Setting up apt (2.9.14) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17119 files and directories currently installed.)
Preparing to unpack .../libxml-sax-perl_1.02+dfsg-4_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-4) over (1.02+dfsg-3) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/tmp/debusine-fetch-exec-upload-792_jyht/macromoleculebuilder_4.0.0+dfsg-4.dsc exists in /tmp/debusine-fetch-exec-upload-792_jyht; copying to chroot
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-Ulk13U/macromoleculebuilder-4.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-Ulk13U' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [869 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [902 B]
Fetched 2380 B in 0s (111 kB/s)
Reading package lists...
Ign:1 file:/<<BUILDDIR>>/resolver-sZviEM/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-sZviEM/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-sZviEM/apt_archive ./ Release [606 B]
Ign:3 file:/<<BUILDDIR>>/resolver-sZviEM/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  architecture-properties asciidoc-base asciidoc-common autoconf automake
  autopoint autotools-dev build-essential cmake cmake-data cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
  dh-strip-nondeterminism docbook-xml docbook-xsl dwz fakeroot freeglut3-dev
  g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gemmi-dev libarchive13t64
  libasan8 libblas-dev libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
  libcurl4t64 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-radeon1
  libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1t64 libexpat1
  libfakeroot libfile-stripnondeterminism-perl libgbm1 libgcc-14-dev
  libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa
  libgles-dev libgles1 libgles2 libglu1-mesa libglu1-mesa-dev libglut-dev
  libglut3.12 libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0
  libglx0 libhwasan0 libice-dev libice6 libisl23 libitm1 libjsoncpp26
  liblapack-dev liblapack3 libllvm19 liblsan0 libmpc3 libmpfr6 libncursesw6
  libnsl2 libopengl-dev libopengl0 libopenmm-dev libopenmm8.1 libproc2-0
  libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librhash1
  libsensors-config libsensors5 libseqan2-dev libsimbody-dev libsimbody3.7
  libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel3.1t64
  libsm-dev libsm6 libstb-dev libstb0t64 libstdc++-14-dev libtirpc-common
  libtirpc3t64 libtool libtsan2 libubsan1 libuv1t64 libvulkan1
  libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev
  libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
  libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0
  libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2-utils libxmu-dev
  libxmu-headers libxmu6 libxshmfence1 libxslt1.1 libxt-dev libxt6t64
  libxxf86vm1 libz3-4 linux-libc-dev m4 media-types mesa-libgallium po-debconf
  procps python3 python3-minimal python3.12 python3.12-minimal rpcsvc-proto
  sgml-base sgml-data tao-pegtl-dev uuid-dev x11-common x11proto-dev xml-core
  xorg-sgml-doctools xsltproc xtrans-dev zlib1g-dev
Suggested packages:
  asciidoc-doc docbook-utils source-highlight autoconf-archive gnu-standards
  autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc
  gcc-14-locales cpp-14-doc dh-make docbook docbook-defguide docbook-dsssl
  dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text
  | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java
  libxslthl-java xalan gcc-14-doc gcc-multilib manpages-dev flex bison gdb
  gcc-doc gdb-aarch64-linux-gnu lrzip liblapack-doc libc-devtools glibc-doc
  libice-doc lm-sensors libsm-doc libstdc++-14-doc libtool-doc gfortran
  | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc
  m4-doc libmail-box-perl python3-doc python3-tk python3-venv python3.12-venv
  python3.12-doc binfmt-support sgml-base-doc perlsgml w3-recs opensp
Recommended packages:
  xmlto manpages manpages-dev libarchive-cpio-perl libgpm2 libltdl-dev
  mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl psmisc
  linux-sysctl-defaults
The following NEW packages will be installed:
  architecture-properties asciidoc-base asciidoc-common autoconf automake
  autopoint autotools-dev build-essential cmake cmake-data cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
  dh-strip-nondeterminism docbook-xml docbook-xsl dwz fakeroot freeglut3-dev
  g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gemmi-dev libarchive13t64
  libasan8 libblas-dev libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
  libcurl4t64 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-radeon1
  libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1t64 libexpat1
  libfakeroot libfile-stripnondeterminism-perl libgbm1 libgcc-14-dev
  libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa
  libgles-dev libgles1 libgles2 libglu1-mesa libglu1-mesa-dev libglut-dev
  libglut3.12 libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0
  libglx0 libhwasan0 libice-dev libice6 libisl23 libitm1 libjsoncpp26
  liblapack-dev liblapack3 libllvm19 liblsan0 libmpc3 libmpfr6 libncursesw6
  libnsl2 libopengl-dev libopengl0 libopenmm-dev libopenmm8.1 libproc2-0
  libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librhash1
  libsensors-config libsensors5 libseqan2-dev libsimbody-dev libsimbody3.7
  libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel3.1t64
  libsm-dev libsm6 libstb-dev libstb0t64 libstdc++-14-dev libtirpc-common
  libtirpc3t64 libtool libtsan2 libubsan1 libuv1t64 libvulkan1
  libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev
  libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
  libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0
  libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2-utils libxmu-dev
  libxmu-headers libxmu6 libxshmfence1 libxslt1.1 libxt-dev libxt6t64
  libxxf86vm1 libz3-4 linux-libc-dev m4 media-types mesa-libgallium po-debconf
  procps python3 python3-minimal python3.12 python3.12-minimal rpcsvc-proto
  sbuild-build-depends-main-dummy sgml-base sgml-data tao-pegtl-dev uuid-dev
  x11-common x11proto-dev xml-core xorg-sgml-doctools xsltproc xtrans-dev
  zlib1g-dev
0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded.
Need to get 148 MB/149 MB of archives.
After this operation, 647 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-sZviEM/apt_archive ./ libseqan2-dev 2.5.0~rc3+dfsg-1 [1222 kB]
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1016 B]
Get:3 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2+b1 [125 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-3 [671 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B]
Get:15 http://deb.debian.org/debian sid/main arm64 python3 arm64 3.12.7-1 [27.8 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 sgml-base all 1.31 [15.4 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-6 [872 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 architecture-properties arm64 0.2.3 [2184 B]
Get:20 http://deb.debian.org/debian sid/main arm64 asciidoc-common all 10.2.1-1 [104 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 xml-core all 0.19 [20.1 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 docbook-xsl all 1.79.2+dfsg-7 [1221 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libxml2-utils arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [97.7 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 xsltproc arm64 1.1.35-1.1+b1 [115 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 asciidoc-base all 10.2.1-1 [84.9 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.9-1 [2459 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b2 [680 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8 [9166 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-8 [1284 B]
Get:42 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:43 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:44 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-8 [42.2 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-8 [24.2 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-8 [2579 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-8 [1161 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-8 [2386 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-8 [1039 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-8 [1442 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-8 [2365 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8 [17.7 MB]
Get:53 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-8 [519 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:55 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:56 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-8 [2267 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8 [10.1 MB]
Get:58 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-8 [20.2 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:60 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:61 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:62 http://deb.debian.org/debian sid/main arm64 cmake-data all 3.31.1-1 [2267 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 cmake arm64 3.31.1-1 [9873 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:74 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 sgml-data all 2.0.11+nmu1 [179 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 docbook-xml all 4.5-13 [77.4 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libdrm-common all 2.4.123-1 [8084 B]
Get:89 http://deb.debian.org/debian sid/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libglapi-mesa arm64 24.2.7-1 [48.0 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [241 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libxcb-dri2-0 arm64 1.17.0-2+b1 [107 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libxfixes3 arm64 1:6.0.0-2+b2 [20.5 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libxshmfence1 arm64 1.3-1+b2 [9076 B]
Get:103 http://deb.debian.org/debian sid/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b3 [19.2 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 libllvm19 arm64 1:19.1.3-2 [23.3 MB]
Get:109 http://deb.debian.org/debian sid/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 mesa-libgallium arm64 24.2.7-1 [7687 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libvulkan1 arm64 1.3.296.0-1 [123 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libwayland-server0 arm64 1.23.0-1+b1 [33.4 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libgbm1 arm64 24.2.7-1 [42.0 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 libgl1-mesa-dri arm64 24.2.7-1 [43.6 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libglx-mesa0 arm64 24.2.7-1 [153 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libglut3.12 arm64 3.4.0-1+b2 [133 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 x11proto-dev all 2024.1-1 [603 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libx11-dev arm64 2:1.8.10-2 [877 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libglvnd-core-dev arm64 1.7.0-1+b2 [13.4 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libwayland-client0 arm64 1.23.0-1+b1 [26.0 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libegl-mesa0 arm64 24.2.7-1 [124 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 libgles1 arm64 1.7.0-1+b2 [12.6 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libgles2 arm64 1.7.0-1+b2 [18.0 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libgles-dev arm64 1.7.0-1+b2 [50.8 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B]
Get:140 http://deb.debian.org/debian sid/main arm64 libglvnd-dev arm64 1.7.0-1+b2 [5144 B]
Get:141 http://deb.debian.org/debian sid/main arm64 libgl1-mesa-dev arm64 24.2.7-1 [18.5 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 libglu1-mesa arm64 9.0.2-1.1+b2 [162 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b2 [203 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 libxext-dev arm64 2:1.3.4-1+b2 [105 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB]
Get:150 http://deb.debian.org/debian sid/main arm64 uuid-dev arm64 2.40.2-11 [47.8 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 libsm-dev arm64 2:1.2.4-1 [38.0 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 libxt-dev arm64 1:1.2.1-1.2+b1 [403 kB]
Get:153 http://deb.debian.org/debian sid/main arm64 libglut-dev arm64 3.4.0-1+b2 [161 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 freeglut3-dev arm64 3.4.0-1+b2 [53.4 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 gemmi-dev arm64 0.6.5+ds-2+b1 [1072 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 libblas-dev arm64 3.12.0-4 [106 kB]
Get:159 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 libopenmm8.1 arm64 8.1.2+dfsg-1+b1 [921 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 libopenmm-dev arm64 8.1.2+dfsg-1+b1 [330 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 libxfixes-dev arm64 1:6.0.0-2+b2 [22.8 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 libxi-dev arm64 2:1.8.2-1 [240 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 libxmu-headers all 2:1.1.3-3 [68.5 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 libxmu-dev arm64 2:1.1.3-3+b3 [63.9 kB]
Get:169 http://deb.debian.org/debian sid/main arm64 libsimbody3.7 arm64 3.7+dfsg-3+b1 [2755 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 libsimbody-dev arm64 3.7+dfsg-3+b1 [2727 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 libsimtkmolmodel3.1t64 arm64 3.1.0-4.1+b3 [571 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 libsimtkmolmodel-dev arm64 3.1.0-4.1+b3 [1864 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 libsimtkmolmodel-plugins arm64 3.1.0-4.1+b3 [17.0 kB]
Get:174 http://deb.debian.org/debian sid/main arm64 libstb0t64 arm64 0.0~git20240715.f7f20f39fe4f+ds-1 [199 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 libstb-dev arm64 0.0~git20240715.f7f20f39fe4f+ds-1 [637 kB]
Get:176 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 148 MB in 4s (41.8 MB/s)
Selecting previously unselected package libpython3.12-minimal:arm64.
(Reading database ... 17119 files and directories currently installed.)
Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ...
Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.6.4-1) ...
Selecting previously unselected package python3.12-minimal.
Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ...
Unpacking python3.12-minimal (3.12.7-3) ...
Setting up libpython3.12-minimal:arm64 (3.12.7-3) ...
Setting up libexpat1:arm64 (2.6.4-1) ...
Setting up python3.12-minimal (3.12.7-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 17439 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.12.7-1_arm64.deb ...
Unpacking python3-minimal (3.12.7-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package libncursesw6:arm64.
Preparing to unpack .../2-libncursesw6_6.5-2+b1_arm64.deb ...
Unpacking libncursesw6:arm64 (6.5-2+b1) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../3-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:arm64.
Preparing to unpack .../4-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libnsl2:arm64.
Preparing to unpack .../5-libnsl2_1.3.0-3+b3_arm64.deb ...
Unpacking libnsl2:arm64 (1.3.0-3+b3) ...
Selecting previously unselected package libpython3.12-stdlib:arm64.
Preparing to unpack .../6-libpython3.12-stdlib_3.12.7-3_arm64.deb ...
Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ...
Selecting previously unselected package python3.12.
Preparing to unpack .../7-python3.12_3.12.7-3_arm64.deb ...
Unpacking python3.12 (3.12.7-3) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../8-libpython3-stdlib_3.12.7-1_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.12.7-1) ...
Setting up python3-minimal (3.12.7-1) ...
Selecting previously unselected package python3.
(Reading database ... 17912 files and directories currently installed.)
Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ...
Unpacking python3 (3.12.7-1) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../001-sgml-base_1.31_all.deb ...
Unpacking sgml-base (1.31) ...
Selecting previously unselected package libproc2-0:arm64.
Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_arm64.deb ...
Unpacking libproc2-0:arm64 (2:4.0.4-6) ...
Selecting previously unselected package procps.
Preparing to unpack .../003-procps_2%3a4.0.4-6_arm64.deb ...
Unpacking procps (2:4.0.4-6) ...
Selecting previously unselected package architecture-properties:arm64.
Preparing to unpack .../004-architecture-properties_0.2.3_arm64.deb ...
Unpacking architecture-properties:arm64 (0.2.3) ...
Selecting previously unselected package asciidoc-common.
Preparing to unpack .../005-asciidoc-common_10.2.1-1_all.deb ...
Unpacking asciidoc-common (10.2.1-1) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../006-xml-core_0.19_all.deb ...
Unpacking xml-core (0.19) ...
Selecting previously unselected package docbook-xsl.
Preparing to unpack .../007-docbook-xsl_1.79.2+dfsg-7_all.deb ...
Unpacking docbook-xsl (1.79.2+dfsg-7) ...
Selecting previously unselected package libxml2-utils.
Preparing to unpack .../008-libxml2-utils_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ...
Unpacking libxml2-utils (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package libxslt1.1:arm64.
Preparing to unpack .../009-libxslt1.1_1.1.35-1.1+b1_arm64.deb ...
Unpacking libxslt1.1:arm64 (1.1.35-1.1+b1) ...
Selecting previously unselected package xsltproc.
Preparing to unpack .../010-xsltproc_1.1.35-1.1+b1_arm64.deb ...
Unpacking xsltproc (1.1.35-1.1+b1) ...
Selecting previously unselected package asciidoc-base.
Preparing to unpack .../011-asciidoc-base_10.2.1-1_all.deb ...
Unpacking asciidoc-base (10.2.1-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../012-m4_1.4.19-4_arm64.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../013-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../016-autopoint_0.22.5-2_all.deb ...
Unpacking autopoint (0.22.5-2) ...
Selecting previously unselected package libc-dev-bin.
Preparing to unpack .../017-libc-dev-bin_2.40-3_arm64.deb ...
Unpacking libc-dev-bin (2.40-3) ...
Selecting previously unselected package linux-libc-dev.
Preparing to unpack .../018-linux-libc-dev_6.11.9-1_all.deb ...
Unpacking linux-libc-dev (6.11.9-1) ...
Selecting previously unselected package libcrypt-dev:arm64.
Preparing to unpack .../019-libcrypt-dev_1%3a4.4.36-5_arm64.deb ...
Unpacking libcrypt-dev:arm64 (1:4.4.36-5) ...
Selecting previously unselected package rpcsvc-proto.
Preparing to unpack .../020-rpcsvc-proto_1.4.3-1+b1_arm64.deb ...
Unpacking rpcsvc-proto (1.4.3-1+b1) ...
Selecting previously unselected package libc6-dev:arm64.
Preparing to unpack .../021-libc6-dev_2.40-3_arm64.deb ...
Unpacking libc6-dev:arm64 (2.40-3) ...
Selecting previously unselected package libisl23:arm64.
Preparing to unpack .../022-libisl23_0.27-1_arm64.deb ...
Unpacking libisl23:arm64 (0.27-1) ...
Selecting previously unselected package libmpfr6:arm64.
Preparing to unpack .../023-libmpfr6_4.2.1-1+b2_arm64.deb ...
Unpacking libmpfr6:arm64 (4.2.1-1+b2) ...
Selecting previously unselected package libmpc3:arm64.
Preparing to unpack .../024-libmpc3_1.3.1-1+b3_arm64.deb ...
Unpacking libmpc3:arm64 (1.3.1-1+b3) ...
Selecting previously unselected package cpp-14-aarch64-linux-gnu.
Preparing to unpack .../025-cpp-14-aarch64-linux-gnu_14.2.0-8_arm64.deb ...
Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8) ...
Selecting previously unselected package cpp-14.
Preparing to unpack .../026-cpp-14_14.2.0-8_arm64.deb ...
Unpacking cpp-14 (14.2.0-8) ...
Selecting previously unselected package cpp-aarch64-linux-gnu.
Preparing to unpack .../027-cpp-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ...
Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1) ...
Selecting previously unselected package cpp.
Preparing to unpack .../028-cpp_4%3a14.2.0-1_arm64.deb ...
Unpacking cpp (4:14.2.0-1) ...
Selecting previously unselected package libcc1-0:arm64.
Preparing to unpack .../029-libcc1-0_14.2.0-8_arm64.deb ...
Unpacking libcc1-0:arm64 (14.2.0-8) ...
Selecting previously unselected package libitm1:arm64.
Preparing to unpack .../030-libitm1_14.2.0-8_arm64.deb ...
Unpacking libitm1:arm64 (14.2.0-8) ...
Selecting previously unselected package libasan8:arm64.
Preparing to unpack .../031-libasan8_14.2.0-8_arm64.deb ...
Unpacking libasan8:arm64 (14.2.0-8) ...
Selecting previously unselected package liblsan0:arm64.
Preparing to unpack .../032-liblsan0_14.2.0-8_arm64.deb ...
Unpacking liblsan0:arm64 (14.2.0-8) ...
Selecting previously unselected package libtsan2:arm64.
Preparing to unpack .../033-libtsan2_14.2.0-8_arm64.deb ...
Unpacking libtsan2:arm64 (14.2.0-8) ...
Selecting previously unselected package libubsan1:arm64.
Preparing to unpack .../034-libubsan1_14.2.0-8_arm64.deb ...
Unpacking libubsan1:arm64 (14.2.0-8) ...
Selecting previously unselected package libhwasan0:arm64.
Preparing to unpack .../035-libhwasan0_14.2.0-8_arm64.deb ...
Unpacking libhwasan0:arm64 (14.2.0-8) ...
Selecting previously unselected package libgcc-14-dev:arm64.
Preparing to unpack .../036-libgcc-14-dev_14.2.0-8_arm64.deb ...
Unpacking libgcc-14-dev:arm64 (14.2.0-8) ...
Selecting previously unselected package gcc-14-aarch64-linux-gnu.
Preparing to unpack .../037-gcc-14-aarch64-linux-gnu_14.2.0-8_arm64.deb ...
Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8) ...
Selecting previously unselected package gcc-14.
Preparing to unpack .../038-gcc-14_14.2.0-8_arm64.deb ...
Unpacking gcc-14 (14.2.0-8) ...
Selecting previously unselected package gcc-aarch64-linux-gnu.
Preparing to unpack .../039-gcc-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ...
Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Selecting previously unselected package gcc.
Preparing to unpack .../040-gcc_4%3a14.2.0-1_arm64.deb ...
Unpacking gcc (4:14.2.0-1) ...
Selecting previously unselected package libstdc++-14-dev:arm64.
Preparing to unpack .../041-libstdc++-14-dev_14.2.0-8_arm64.deb ...
Unpacking libstdc++-14-dev:arm64 (14.2.0-8) ...
Selecting previously unselected package g++-14-aarch64-linux-gnu.
Preparing to unpack .../042-g++-14-aarch64-linux-gnu_14.2.0-8_arm64.deb ...
Unpacking g++-14-aarch64-linux-gnu (14.2.0-8) ...
Selecting previously unselected package g++-14.
Preparing to unpack .../043-g++-14_14.2.0-8_arm64.deb ...
Unpacking g++-14 (14.2.0-8) ...
Selecting previously unselected package g++-aarch64-linux-gnu.
Preparing to unpack .../044-g++-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ...
Unpacking g++-aarch64-linux-gnu (4:14.2.0-1) ...
Selecting previously unselected package g++.
Preparing to unpack .../045-g++_4%3a14.2.0-1_arm64.deb ...
Unpacking g++ (4:14.2.0-1) ...
Selecting previously unselected package build-essential.
Preparing to unpack .../046-build-essential_12.12_arm64.deb ...
Unpacking build-essential (12.12) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../047-cmake-data_3.31.1-1_all.deb ...
Unpacking cmake-data (3.31.1-1) ...
Selecting previously unselected package libarchive13t64:arm64.
Preparing to unpack .../048-libarchive13t64_3.7.4-1.1_arm64.deb ...
Unpacking libarchive13t64:arm64 (3.7.4-1.1) ...
Selecting previously unselected package libcurl4t64:arm64.
Preparing to unpack .../049-libcurl4t64_8.11.0-1_arm64.deb ...
Unpacking libcurl4t64:arm64 (8.11.0-1) ...
Selecting previously unselected package libjsoncpp26:arm64.
Preparing to unpack .../050-libjsoncpp26_1.9.6-3_arm64.deb ...
Unpacking libjsoncpp26:arm64 (1.9.6-3) ...
Selecting previously unselected package librhash1:arm64.
Preparing to unpack .../051-librhash1_1.4.5-1_arm64.deb ...
Unpacking librhash1:arm64 (1.4.5-1) ...
Selecting previously unselected package libuv1t64:arm64.
Preparing to unpack .../052-libuv1t64_1.48.0-7_arm64.deb ...
Unpacking libuv1t64:arm64 (1.48.0-7) ...
Selecting previously unselected package cmake.
Preparing to unpack .../053-cmake_3.31.1-1_arm64.deb ...
Unpacking cmake (3.31.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../054-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../055-libtool_2.4.7-8_all.deb ...
Unpacking libtool (2.4.7-8) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../056-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../057-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../058-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../059-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../060-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../062-debhelper_13.20_all.deb ...
Unpacking debhelper (13.20) ...
Selecting previously unselected package sgml-data.
Preparing to unpack .../063-sgml-data_2.0.11+nmu1_all.deb ...
Unpacking sgml-data (2.0.11+nmu1) ...
Selecting previously unselected package docbook-xml.
Preparing to unpack .../064-docbook-xml_4.5-13_all.deb ...
Unpacking docbook-xml (4.5-13) ...
Selecting previously unselected package libfakeroot:arm64.
Preparing to unpack .../065-libfakeroot_1.36-1_arm64.deb ...
Unpacking libfakeroot:arm64 (1.36-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../066-fakeroot_1.36-1_arm64.deb ...
Unpacking fakeroot (1.36-1) ...
Selecting previously unselected package libglvnd0:arm64.
Preparing to unpack .../067-libglvnd0_1.7.0-1+b2_arm64.deb ...
Unpacking libglvnd0:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libxau6:arm64.
Preparing to unpack .../068-libxau6_1%3a1.0.11-1_arm64.deb ...
Unpacking libxau6:arm64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:arm64.
Preparing to unpack .../069-libxdmcp6_1%3a1.1.5-1_arm64.deb ...
Unpacking libxdmcp6:arm64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:arm64.
Preparing to unpack .../070-libxcb1_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb1:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../071-libx11-data_2%3a1.8.10-2_all.deb ...
Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:arm64.
Preparing to unpack .../072-libx11-6_2%3a1.8.10-2_arm64.deb ...
Unpacking libx11-6:arm64 (2:1.8.10-2) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../073-libdrm-common_2.4.123-1_all.deb ...
Unpacking libdrm-common (2.4.123-1) ...
Selecting previously unselected package libdrm2:arm64.
Preparing to unpack .../074-libdrm2_2.4.123-1_arm64.deb ...
Unpacking libdrm2:arm64 (2.4.123-1) ...
Selecting previously unselected package libglapi-mesa:arm64.
Preparing to unpack .../075-libglapi-mesa_24.2.7-1_arm64.deb ...
Unpacking libglapi-mesa:arm64 (24.2.7-1) ...
Selecting previously unselected package libx11-xcb1:arm64.
Preparing to unpack .../076-libx11-xcb1_2%3a1.8.10-2_arm64.deb ...
Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ...
Selecting previously unselected package libxcb-dri2-0:arm64.
Preparing to unpack .../077-libxcb-dri2-0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-dri2-0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-dri3-0:arm64.
Preparing to unpack .../078-libxcb-dri3-0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-dri3-0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-glx0:arm64.
Preparing to unpack .../079-libxcb-glx0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-glx0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-present0:arm64.
Preparing to unpack .../080-libxcb-present0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-present0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-randr0:arm64.
Preparing to unpack .../081-libxcb-randr0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-randr0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:arm64.
Preparing to unpack .../082-libxcb-shm0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-sync1:arm64.
Preparing to unpack .../083-libxcb-sync1_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-sync1:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-xfixes0:arm64.
Preparing to unpack .../084-libxcb-xfixes0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-xfixes0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:arm64.
Preparing to unpack .../085-libxext6_2%3a1.3.4-1+b2_arm64.deb ...
Unpacking libxext6:arm64 (2:1.3.4-1+b2) ...
Selecting previously unselected package libxfixes3:arm64.
Preparing to unpack .../086-libxfixes3_1%3a6.0.0-2+b2_arm64.deb ...
Unpacking libxfixes3:arm64 (1:6.0.0-2+b2) ...
Selecting previously unselected package libxshmfence1:arm64.
Preparing to unpack .../087-libxshmfence1_1.3-1+b2_arm64.deb ...
Unpacking libxshmfence1:arm64 (1.3-1+b2) ...
Selecting previously unselected package libxxf86vm1:arm64.
Preparing to unpack .../088-libxxf86vm1_1%3a1.1.4-1+b3_arm64.deb ...
Unpacking libxxf86vm1:arm64 (1:1.1.4-1+b3) ...
Selecting previously unselected package libdrm-amdgpu1:arm64.
Preparing to unpack .../089-libdrm-amdgpu1_2.4.123-1_arm64.deb ...
Unpacking libdrm-amdgpu1:arm64 (2.4.123-1) ...
Selecting previously unselected package libdrm-radeon1:arm64.
Preparing to unpack .../090-libdrm-radeon1_2.4.123-1_arm64.deb ...
Unpacking libdrm-radeon1:arm64 (2.4.123-1) ...
Selecting previously unselected package libedit2:arm64.
Preparing to unpack .../091-libedit2_3.1-20240808-1_arm64.deb ...
Unpacking libedit2:arm64 (3.1-20240808-1) ...
Selecting previously unselected package libz3-4:arm64.
Preparing to unpack .../092-libz3-4_4.13.3-1_arm64.deb ...
Unpacking libz3-4:arm64 (4.13.3-1) ...
Selecting previously unselected package libllvm19:arm64.
Preparing to unpack .../093-libllvm19_1%3a19.1.3-2_arm64.deb ...
Unpacking libllvm19:arm64 (1:19.1.3-2) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../094-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:arm64.
Preparing to unpack .../095-libsensors5_1%3a3.6.0-10+b1_arm64.deb ...
Unpacking libsensors5:arm64 (1:3.6.0-10+b1) ...
Selecting previously unselected package mesa-libgallium:arm64.
Preparing to unpack .../096-mesa-libgallium_24.2.7-1_arm64.deb ...
Unpacking mesa-libgallium:arm64 (24.2.7-1) ...
Selecting previously unselected package libvulkan1:arm64.
Preparing to unpack .../097-libvulkan1_1.3.296.0-1_arm64.deb ...
Unpacking libvulkan1:arm64 (1.3.296.0-1) ...
Selecting previously unselected package libwayland-server0:arm64.
Preparing to unpack .../098-libwayland-server0_1.23.0-1+b1_arm64.deb ...
Unpacking libwayland-server0:arm64 (1.23.0-1+b1) ...
Selecting previously unselected package libgbm1:arm64.
Preparing to unpack .../099-libgbm1_24.2.7-1_arm64.deb ...
Unpacking libgbm1:arm64 (24.2.7-1) ...
Selecting previously unselected package libgl1-mesa-dri:arm64.
Preparing to unpack .../100-libgl1-mesa-dri_24.2.7-1_arm64.deb ...
Unpacking libgl1-mesa-dri:arm64 (24.2.7-1) ...
Selecting previously unselected package libglx-mesa0:arm64.
Preparing to unpack .../101-libglx-mesa0_24.2.7-1_arm64.deb ...
Unpacking libglx-mesa0:arm64 (24.2.7-1) ...
Selecting previously unselected package libglx0:arm64.
Preparing to unpack .../102-libglx0_1.7.0-1+b2_arm64.deb ...
Unpacking libglx0:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libgl1:arm64.
Preparing to unpack .../103-libgl1_1.7.0-1+b2_arm64.deb ...
Unpacking libgl1:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libxi6:arm64.
Preparing to unpack .../104-libxi6_2%3a1.8.2-1_arm64.deb ...
Unpacking libxi6:arm64 (2:1.8.2-1) ...
Selecting previously unselected package libglut3.12:arm64.
Preparing to unpack .../105-libglut3.12_3.4.0-1+b2_arm64.deb ...
Unpacking libglut3.12:arm64 (3.4.0-1+b2) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../106-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../107-x11proto-dev_2024.1-1_all.deb ...
Unpacking x11proto-dev (2024.1-1) ...
Selecting previously unselected package libxau-dev:arm64.
Preparing to unpack .../108-libxau-dev_1%3a1.0.11-1_arm64.deb ...
Unpacking libxau-dev:arm64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp-dev:arm64.
Preparing to unpack .../109-libxdmcp-dev_1%3a1.1.5-1_arm64.deb ...
Unpacking libxdmcp-dev:arm64 (1:1.1.5-1) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../110-xtrans-dev_1.4.0-1_all.deb ...
Unpacking xtrans-dev (1.4.0-1) ...
Selecting previously unselected package libxcb1-dev:arm64.
Preparing to unpack .../111-libxcb1-dev_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb1-dev:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-dev:arm64.
Preparing to unpack .../112-libx11-dev_2%3a1.8.10-2_arm64.deb ...
Unpacking libx11-dev:arm64 (2:1.8.10-2) ...
Selecting previously unselected package libglx-dev:arm64.
Preparing to unpack .../113-libglx-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libglx-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libgl-dev:arm64.
Preparing to unpack .../114-libgl-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libgl-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libglvnd-core-dev:arm64.
Preparing to unpack .../115-libglvnd-core-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libglvnd-core-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libwayland-client0:arm64.
Preparing to unpack .../116-libwayland-client0_1.23.0-1+b1_arm64.deb ...
Unpacking libwayland-client0:arm64 (1.23.0-1+b1) ...
Selecting previously unselected package libegl-mesa0:arm64.
Preparing to unpack .../117-libegl-mesa0_24.2.7-1_arm64.deb ...
Unpacking libegl-mesa0:arm64 (24.2.7-1) ...
Selecting previously unselected package libegl1:arm64.
Preparing to unpack .../118-libegl1_1.7.0-1+b2_arm64.deb ...
Unpacking libegl1:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libegl-dev:arm64.
Preparing to unpack .../119-libegl-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libegl-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libgles1:arm64.
Preparing to unpack .../120-libgles1_1.7.0-1+b2_arm64.deb ...
Unpacking libgles1:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libgles2:arm64.
Preparing to unpack .../121-libgles2_1.7.0-1+b2_arm64.deb ...
Unpacking libgles2:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libgles-dev:arm64.
Preparing to unpack .../122-libgles-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libgles-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libopengl0:arm64.
Preparing to unpack .../123-libopengl0_1.7.0-1+b2_arm64.deb ...
Unpacking libopengl0:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libopengl-dev:arm64.
Preparing to unpack .../124-libopengl-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libopengl-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libglvnd-dev:arm64.
Preparing to unpack .../125-libglvnd-dev_1.7.0-1+b2_arm64.deb ...
Unpacking libglvnd-dev:arm64 (1.7.0-1+b2) ...
Selecting previously unselected package libgl1-mesa-dev:arm64.
Preparing to unpack .../126-libgl1-mesa-dev_24.2.7-1_arm64.deb ...
Unpacking libgl1-mesa-dev:arm64 (24.2.7-1) ...
Selecting previously unselected package libglu1-mesa:arm64.
Preparing to unpack .../127-libglu1-mesa_9.0.2-1.1+b2_arm64.deb ...
Unpacking libglu1-mesa:arm64 (9.0.2-1.1+b2) ...
Selecting previously unselected package libglu1-mesa-dev:arm64.
Preparing to unpack .../128-libglu1-mesa-dev_9.0.2-1.1+b2_arm64.deb ...
Unpacking libglu1-mesa-dev:arm64 (9.0.2-1.1+b2) ...
Selecting previously unselected package libxext-dev:arm64.
Preparing to unpack .../129-libxext-dev_2%3a1.3.4-1+b2_arm64.deb ...
Unpacking libxext-dev:arm64 (2:1.3.4-1+b2) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../130-x11-common_1%3a7.7+23.1_all.deb ...
Unpacking x11-common (1:7.7+23.1) ...
Selecting previously unselected package libice6:arm64.
Preparing to unpack .../131-libice6_2%3a1.1.1-1_arm64.deb ...
Unpacking libice6:arm64 (2:1.1.1-1) ...
Selecting previously unselected package libsm6:arm64.
Preparing to unpack .../132-libsm6_2%3a1.2.4-1_arm64.deb ...
Unpacking libsm6:arm64 (2:1.2.4-1) ...
Selecting previously unselected package libxt6t64:arm64.
Preparing to unpack .../133-libxt6t64_1%3a1.2.1-1.2+b1_arm64.deb ...
Unpacking libxt6t64:arm64 (1:1.2.1-1.2+b1) ...
Selecting previously unselected package libice-dev:arm64.
Preparing to unpack .../134-libice-dev_2%3a1.1.1-1_arm64.deb ...
Unpacking libice-dev:arm64 (2:1.1.1-1) ...
Selecting previously unselected package uuid-dev:arm64.
Preparing to unpack .../135-uuid-dev_2.40.2-11_arm64.deb ...
Unpacking uuid-dev:arm64 (2.40.2-11) ...
Selecting previously unselected package libsm-dev:arm64.
Preparing to unpack .../136-libsm-dev_2%3a1.2.4-1_arm64.deb ...
Unpacking libsm-dev:arm64 (2:1.2.4-1) ...
Selecting previously unselected package libxt-dev:arm64.
Preparing to unpack .../137-libxt-dev_1%3a1.2.1-1.2+b1_arm64.deb ...
Unpacking libxt-dev:arm64 (1:1.2.1-1.2+b1) ...
Selecting previously unselected package libglut-dev:arm64.
Preparing to unpack .../138-libglut-dev_3.4.0-1+b2_arm64.deb ...
Unpacking libglut-dev:arm64 (3.4.0-1+b2) ...
Selecting previously unselected package freeglut3-dev:arm64.
Preparing to unpack .../139-freeglut3-dev_3.4.0-1+b2_arm64.deb ...
Unpacking freeglut3-dev:arm64 (3.4.0-1+b2) ...
Selecting previously unselected package tao-pegtl-dev.
Preparing to unpack .../140-tao-pegtl-dev_3.2.7-1_all.deb ...
Unpacking tao-pegtl-dev (3.2.7-1) ...
Selecting previously unselected package gemmi-dev.
Preparing to unpack .../141-gemmi-dev_0.6.5+ds-2+b1_arm64.deb ...
Unpacking gemmi-dev (0.6.5+ds-2+b1) ...
Selecting previously unselected package libblas3:arm64.
Preparing to unpack .../142-libblas3_3.12.0-4_arm64.deb ...
Unpacking libblas3:arm64 (3.12.0-4) ...
Selecting previously unselected package libblas-dev:arm64.
Preparing to unpack .../143-libblas-dev_3.12.0-4_arm64.deb ...
Unpacking libblas-dev:arm64 (3.12.0-4) ...
Selecting previously unselected package libgfortran5:arm64.
Preparing to unpack .../144-libgfortran5_14.2.0-8_arm64.deb ...
Unpacking libgfortran5:arm64 (14.2.0-8) ...
Selecting previously unselected package liblapack3:arm64.
Preparing to unpack .../145-liblapack3_3.12.0-4_arm64.deb ...
Unpacking liblapack3:arm64 (3.12.0-4) ...
Selecting previously unselected package liblapack-dev:arm64.
Preparing to unpack .../146-liblapack-dev_3.12.0-4_arm64.deb ...
Unpacking liblapack-dev:arm64 (3.12.0-4) ...
Selecting previously unselected package libopenmm8.1.
Preparing to unpack .../147-libopenmm8.1_8.1.2+dfsg-1+b1_arm64.deb ...
Unpacking libopenmm8.1 (8.1.2+dfsg-1+b1) ...
Selecting previously unselected package libopenmm-dev.
Preparing to unpack .../148-libopenmm-dev_8.1.2+dfsg-1+b1_arm64.deb ...
Unpacking libopenmm-dev (8.1.2+dfsg-1+b1) ...
Selecting previously unselected package libseqan2-dev.
Preparing to unpack .../149-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ...
Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ...
Selecting previously unselected package libxfixes-dev:arm64.
Preparing to unpack .../150-libxfixes-dev_1%3a6.0.0-2+b2_arm64.deb ...
Unpacking libxfixes-dev:arm64 (1:6.0.0-2+b2) ...
Selecting previously unselected package libxi-dev:arm64.
Preparing to unpack .../151-libxi-dev_2%3a1.8.2-1_arm64.deb ...
Unpacking libxi-dev:arm64 (2:1.8.2-1) ...
Selecting previously unselected package libxmu6:arm64.
Preparing to unpack .../152-libxmu6_2%3a1.1.3-3+b3_arm64.deb ...
Unpacking libxmu6:arm64 (2:1.1.3-3+b3) ...
Selecting previously unselected package libxmu-headers.
Preparing to unpack .../153-libxmu-headers_2%3a1.1.3-3_all.deb ...
Unpacking libxmu-headers (2:1.1.3-3) ...
Selecting previously unselected package libxmu-dev:arm64.
Preparing to unpack .../154-libxmu-dev_2%3a1.1.3-3+b3_arm64.deb ...
Unpacking libxmu-dev:arm64 (2:1.1.3-3+b3) ...
Selecting previously unselected package libsimbody3.7:arm64.
Preparing to unpack .../155-libsimbody3.7_3.7+dfsg-3+b1_arm64.deb ...
Unpacking libsimbody3.7:arm64 (3.7+dfsg-3+b1) ...
Selecting previously unselected package libsimbody-dev:arm64.
Preparing to unpack .../156-libsimbody-dev_3.7+dfsg-3+b1_arm64.deb ...
Unpacking libsimbody-dev:arm64 (3.7+dfsg-3+b1) ...
Selecting previously unselected package libsimtkmolmodel3.1t64:arm64.
Preparing to unpack .../157-libsimtkmolmodel3.1t64_3.1.0-4.1+b3_arm64.deb ...
Unpacking libsimtkmolmodel3.1t64:arm64 (3.1.0-4.1+b3) ...
Selecting previously unselected package libsimtkmolmodel-dev:arm64.
Preparing to unpack .../158-libsimtkmolmodel-dev_3.1.0-4.1+b3_arm64.deb ...
Unpacking libsimtkmolmodel-dev:arm64 (3.1.0-4.1+b3) ...
Selecting previously unselected package libsimtkmolmodel-plugins.
Preparing to unpack .../159-libsimtkmolmodel-plugins_3.1.0-4.1+b3_arm64.deb ...
Unpacking libsimtkmolmodel-plugins (3.1.0-4.1+b3) ...
Selecting previously unselected package libstb0t64:arm64.
Preparing to unpack .../160-libstb0t64_0.0~git20240715.f7f20f39fe4f+ds-1_arm64.deb ...
Unpacking libstb0t64:arm64 (0.0~git20240715.f7f20f39fe4f+ds-1) ...
Selecting previously unselected package libstb-dev:arm64.
Preparing to unpack .../161-libstb-dev_0.0~git20240715.f7f20f39fe4f+ds-1_arm64.deb ...
Unpacking libstb-dev:arm64 (0.0~git20240715.f7f20f39fe4f+ds-1) ...
Selecting previously unselected package zlib1g-dev:arm64.
Preparing to unpack .../162-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ...
Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../163-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up media-types (10.1.0) ...
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up libwayland-server0:arm64 (1.23.0-1+b1) ...
Setting up libxau6:arm64 (1:1.0.11-1) ...
Setting up libxdmcp6:arm64 (1:1.1.5-1) ...
Setting up libxcb1:arm64 (1.17.0-2+b1) ...
Setting up libxcb-xfixes0:arm64 (1.17.0-2+b1) ...
Setting up libglvnd-core-dev:arm64 (1.7.0-1+b2) ...
Setting up libcurl4t64:arm64 (8.11.0-1) ...
Setting up architecture-properties:arm64 (0.2.3) ...
Setting up libglvnd0:arm64 (1.7.0-1+b2) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxcb-glx0:arm64 (1.17.0-2+b1) ...
Setting up libdebhelper-perl (13.20) ...
Setting up libedit2:arm64 (3.1-20240808-1) ...
Setting up libuv1t64:arm64 (1.48.0-7) ...
Setting up x11-common (1:7.7+23.1) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libsensors-config (1:3.6.0-10) ...
Setting up linux-libc-dev (6.11.9-1) ...
Setting up m4 (1.4.19-4) ...
Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ...
Setting up libopengl0:arm64 (1.7.0-1+b2) ...
Setting up libfakeroot:arm64 (1.36-1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ...
Setting up fakeroot (1.36-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up libxcb-present0:arm64 (1.17.0-2+b1) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libz3-4:arm64 (4.13.3-1) ...
Setting up libblas3:arm64 (3.12.0-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up rpcsvc-proto (1.4.3-1+b1) ...
Setting up libgles2:arm64 (1.7.0-1+b2) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up libmpfr6:arm64 (4.2.1-1+b2) ...
Setting up libxcb-sync1:arm64 (1.17.0-2+b1) ...
Setting up libjsoncpp26:arm64 (1.9.6-3) ...
Setting up libgles1:arm64 (1.7.0-1+b2) ...
Setting up libproc2-0:arm64 (2:4.0.4-6) ...
Setting up libmpc3:arm64 (1.3.1-1+b3) ...
Setting up autopoint (0.22.5-2) ...
Setting up libsensors5:arm64 (1:3.6.0-10+b1) ...
Setting up libncursesw6:arm64 (6.5-2+b1) ...
Setting up libglapi-mesa:arm64 (24.2.7-1) ...
Setting up libgfortran5:arm64 (14.2.0-8) ...
Setting up libvulkan1:arm64 (1.3.296.0-1) ...
Setting up autoconf (2.72-3) ...
Setting up libubsan1:arm64 (14.2.0-8) ...
Setting up libxcb-dri2-0:arm64 (1.17.0-2+b1) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up libxshmfence1:arm64 (1.3-1+b2) ...
Setting up libhwasan0:arm64 (14.2.0-8) ...
Setting up libcrypt-dev:arm64 (1:4.4.36-5) ...
Setting up libxcb-randr0:arm64 (1.17.0-2+b1) ...
Setting up libasan8:arm64 (14.2.0-8) ...
Setting up procps (2:4.0.4-6) ...
Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ...
Setting up libx11-6:arm64 (2:1.8.10-2) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up sgml-base (1.31) ...
Setting up cmake-data (3.31.1-1) ...
Setting up librhash1:arm64 (1.4.5-1) ...
Setting up libglu1-mesa:arm64 (9.0.2-1.1+b2) ...
Setting up libtsan2:arm64 (14.2.0-8) ...
Setting up libopengl-dev:arm64 (1.7.0-1+b2) ...
Setting up libisl23:arm64 (0.27-1) ...
Setting up libxml2-utils (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libc-dev-bin (2.40-3) ...
Setting up libstb0t64:arm64 (0.0~git20240715.f7f20f39fe4f+ds-1) ...
Setting up libopenmm8.1 (8.1.2+dfsg-1+b1) ...
Setting up libdrm-common (2.4.123-1) ...
Setting up libarchive13t64:arm64 (3.7.4-1.1) ...
Setting up libcc1-0:arm64 (14.2.0-8) ...
Setting up liblsan0:arm64 (14.2.0-8) ...
Setting up libblas-dev:arm64 (3.12.0-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
Setting up tao-pegtl-dev (3.2.7-1) ...
Setting up libitm1:arm64 (14.2.0-8) ...
Setting up libwayland-client0:arm64 (1.23.0-1+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up x11proto-dev (2024.1-1) ...
Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ...
Setting up libllvm19:arm64 (1:19.1.3-2) ...
Setting up libx11-xcb1:arm64 (2:1.8.10-2) ...
Setting up libice6:arm64 (2:1.1.1-1) ...
Setting up liblapack3:arm64 (3.12.0-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up libxau-dev:arm64 (1:1.0.11-1) ...
Setting up libice-dev:arm64 (2:1.1.1-1) ...
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Setting up gemmi-dev (0.6.5+ds-2+b1) ...
Setting up xsltproc (1.1.35-1.1+b1) ...
Setting up libxext6:arm64 (2:1.3.4-1+b2) ...
Setting up libopenmm-dev (8.1.2+dfsg-1+b1) ...
Setting up libxxf86vm1:arm64 (1:1.1.4-1+b3) ...
Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ...
Setting up libxfixes3:arm64 (1:6.0.0-2+b2) ...
Setting up liblapack-dev:arm64 (3.12.0-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
Setting up libdrm2:arm64 (2.4.123-1) ...
Setting up libstb-dev:arm64 (0.0~git20240715.f7f20f39fe4f+ds-1) ...
Setting up cpp-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up xml-core (0.19) ...
Setting up libnsl2:arm64 (1.3.0-3+b3) ...
Setting up cmake (3.31.1-1) ...
Setting up libc6-dev:arm64 (2.40-3) ...
Setting up libgcc-14-dev:arm64 (14.2.0-8) ...
Setting up libstdc++-14-dev:arm64 (14.2.0-8) ...
Setting up libsm6:arm64 (2:1.2.4-1) ...
Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ...
Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ...
Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ...
Setting up libxi6:arm64 (2:1.8.2-1) ...
Setting up libdrm-radeon1:arm64 (2.4.123-1) ...
Setting up python3.12 (3.12.7-3) ...
Setting up libx11-dev:arm64 (2:1.8.10-2) ...
Setting up libxfixes-dev:arm64 (1:6.0.0-2+b2) ...
Setting up cpp-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up uuid-dev:arm64 (2.40.2-11) ...
Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ...
Setting up cpp-14 (14.2.0-8) ...
Setting up libxext-dev:arm64 (2:1.3.4-1+b2) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up cpp (4:14.2.0-1) ...
Setting up gcc-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up libxi-dev:arm64 (2:1.8.2-1) ...
Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
Setting up gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up mesa-libgallium:arm64 (24.2.7-1) ...
Setting up libxmu-headers (2:1.1.3-3) ...
Setting up libxmu6:arm64 (2:1.1.3-3+b3) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up libgbm1:arm64 (24.2.7-1) ...
Setting up libsm-dev:arm64 (2:1.2.4-1) ...
Setting up libgl1-mesa-dri:arm64 (24.2.7-1) ...
Setting up python3 (3.12.7-1) ...
Setting up gcc-14 (14.2.0-8) ...
Setting up asciidoc-common (10.2.1-1) ...
Setting up libegl-mesa0:arm64 (24.2.7-1) ...
Setting up libxt-dev:arm64 (1:1.2.1-1.2+b1) ...
Setting up libegl1:arm64 (1.7.0-1+b2) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-8) ...
Setting up libglx-mesa0:arm64 (24.2.7-1) ...
Setting up libglx0:arm64 (1.7.0-1+b2) ...
Setting up libtool (2.4.7-8) ...
Setting up libxmu-dev:arm64 (2:1.1.3-3+b3) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up libgl1:arm64 (1.7.0-1+b2) ...
Setting up libglut3.12:arm64 (3.4.0-1+b2) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up libsimbody3.7:arm64 (3.7+dfsg-3+b1) ...
Setting up build-essential (12.12) ...
Setting up libglx-dev:arm64 (1.7.0-1+b2) ...
Setting up libgl-dev:arm64 (1.7.0-1+b2) ...
Setting up libegl-dev:arm64 (1.7.0-1+b2) ...
Setting up debhelper (13.20) ...
Setting up libsimtkmolmodel3.1t64:arm64 (3.1.0-4.1+b3) ...
Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1+b2) ...
Setting up libgles-dev:arm64 (1.7.0-1+b2) ...
Setting up libsimtkmolmodel-plugins (3.1.0-4.1+b3) ...
Setting up libsimtkmolmodel-dev:arm64 (3.1.0-4.1+b3) ...
Setting up libglvnd-dev:arm64 (1.7.0-1+b2) ...
Setting up libgl1-mesa-dev:arm64 (24.2.7-1) ...
Setting up libglut-dev:arm64 (3.4.0-1+b2) ...
Setting up freeglut3-dev:arm64 (3.4.0-1+b2) ...
Setting up libsimbody-dev:arm64 (3.7+dfsg-3+b1) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up docbook-xsl (1.79.2+dfsg-7) ...
Setting up sgml-data (2.0.11+nmu1) ...
Setting up asciidoc-base (10.2.1-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up docbook-xml (4.5-13) ...
Processing triggers for sgml-base (1.31) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.9-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.14 architecture-properties_0.2.3 asciidoc-base_10.2.1-1 asciidoc-common_10.2.1-1 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 cmake_3.31.1-1 cmake-data_3.31.1-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.67-1 diffutils_1:3.10-1+b1 docbook-xml_4.5-13 docbook-xsl_1.79.2+dfsg-7 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 freeglut3-dev_3.4.0-1+b2 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-aarch64-linux-gnu_14.2.0-8 gcc-14-base_14.2.0-8 gcc-aarch64-linux-gnu_4:14.2.0-1 gemmi-dev_0.6.5+ds-2+b1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpg_2.2.45-2 gpgconf_2.2.45-2 gpgv_2.2.45-2 grep_3.11-4+b1 groff-base_1.23.0-5 gzip_1.12-1.1+b1 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 iso-codes_4.17.0-1 libacl1_2.3.2-2+b1 libaliased-perl_0.34-3 libappstream5_1.0.3-1+b1 libapt-pkg-perl_0.1.40+b6 libapt-pkg6.0t64_2.9.14 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-1.1 libasan8_14.2.0-8 libassuan9_3.0.1-2 libatomic1_14.2.0-8 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2 libb-hooks-endofscope-perl_0.28-1 libb-hooks-op-check-perl_0.22-3+b2 libberkeleydb-perl_0.66-1 libbinutils_2.43.1-5 libblas-dev_3.12.0-4 libblas3_3.12.0-4 libblkid1_2.40.2-11 libbrotli1_1.1.0-2+b6 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-dev_2.40-3 libcap-ng0_0.8.5-3+b1 libcap2_1:2.66-5+b1 libcapture-tiny-perl_0.48-2 libcc1-0_14.2.0-8 libcgi-pm-perl_4.66-1 libclass-data-inheritable-perl_0.10-1 libclass-inspector-perl_1.36-3 libclass-method-modifiers-perl_2.15-1 libclass-xsaccessor-perl_1.19-4+b4 libclone-perl_0.47-1+b1 libcom-err2_1.47.1-1+b1 libconfig-tiny-perl_2.30-1 libconst-fast-perl_0.014-2 libcpanel-json-xs-perl_4.38-1+b1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libcurl3t64-gnutls_8.11.0-1 libcurl4t64_8.11.0-1 libdata-dpath-perl_0.60-1 libdata-messagepack-perl_1.02-1+b4 libdata-optlist-perl_0.114-1 libdata-validate-domain-perl_0.15-1 libdata-validate-ip-perl_0.31-1 libdata-validate-uri-perl_0.07-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.273 libdebhelper-perl_13.20 libdevel-callchecker-perl_0.009-1+b1 libdevel-size-perl_0.84-1+b1 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.11 libdrm-amdgpu1_2.4.123-1 libdrm-common_2.4.123-1 libdrm-radeon1_2.4.123-1 libdrm2_2.4.123-1 libdynaloader-functions-perl_0.004-1 libedit2_3.1-20240808-1 libegl-dev_1.7.0-1+b2 libegl-mesa0_24.2.7-1 libegl1_1.7.0-1+b2 libelf1t64_0.192-4 libemail-address-xs-perl_1.05-1+b4 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.4-1 libext2fs2t64_1.47.1-1+b1 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-basedir-perl_0.09-2 libfile-find-rule-perl_0.34-3 libfile-listing-perl_6.16-1 libfile-sharedir-perl_1.118-3 libfile-stripnondeterminism-perl_1.14.0-1 libfont-ttf-perl_1.06-2 libgbm1_24.2.7-1 libgcc-14-dev_14.2.0-8 libgcc-s1_14.2.0-8 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-8 libgl-dev_1.7.0-1+b2 libgl1_1.7.0-1+b2 libgl1-mesa-dev_24.2.7-1 libgl1-mesa-dri_24.2.7-1 libglapi-mesa_24.2.7-1 libgles-dev_1.7.0-1+b2 libgles1_1.7.0-1+b2 libgles2_1.7.0-1+b2 libglib2.0-0t64_2.82.2-3 libglu1-mesa_9.0.2-1.1+b2 libglu1-mesa-dev_9.0.2-1.1+b2 libglut-dev_3.4.0-1+b2 libglut3.12_3.4.0-1+b2 libglvnd-core-dev_1.7.0-1+b2 libglvnd-dev_1.7.0-1+b2 libglvnd0_1.7.0-1+b2 libglx-dev_1.7.0-1+b2 libglx-mesa0_24.2.7-1 libglx0_1.7.0-1+b2 libgmp10_2:6.3.0+dfsg-2+b2 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-8 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1+b1 libhtml-form-perl_6.12-1 libhtml-html5-entities-perl_0.004-3 libhtml-parser-perl_3.83-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tokeparser-simple-perl_3.16-4 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_7.00-2 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-8 libice-dev_2:1.1.1-1 libice6_2:1.1.1-1 libicu72_72.1-5+b1 libidn2-0_2.3.7-2+b1 libimport-into-perl_1.002005-2 libio-html-perl_1.004-3 libio-interactive-perl_1.025-1 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libipc-run3-perl_0.049-1 libipc-system-simple-perl_1.30-2 libisl23_0.27-1 libiterator-perl_0.03+ds1-2 libiterator-util-perl_0.02+ds1-2 libitm1_14.2.0-8 libjansson4_2.14-2+b3 libjson-maybexs-perl_1.004008-1 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 liblapack-dev_3.12.0-4 liblapack3_3.12.0-4 libldap-2.5-0_2.5.18+dfsg-3+b1 liblist-compare-perl_0.55-2 liblist-someutils-perl_0.59-1 liblist-utilsby-perl_0.12-2 libllvm19_1:19.1.3-2 liblsan0_14.2.0-8 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz1_1.15~pre2-1 liblz4-1_1.9.4-3+b1 liblzma5_5.6.3-1+b1 liblzo2-2_2.10-3+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmarkdown2_2.2.7-2.1 libmd0_1.1.0-2+b1 libmldbm-perl_2.05-4 libmodule-implementation-perl_0.09-2 libmodule-runtime-perl_0.016-2 libmoo-perl_2.005005-1 libmoox-aliases-perl_0.001006-2 libmount1_2.40.2-11 libmouse-perl_2.5.11-1+b1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libnamespace-clean-perl_0.27-2 libncursesw6_6.5-2+b1 libnet-domain-tld-perl_1.75-4 libnet-http-perl_6.23-1 libnet-ipv6addr-perl_1.02-1 libnet-netmask-perl_2.0002-2 libnet-ssleay-perl_1.94-2 libnetaddr-ip-perl_4.079+dfsg-2+b4 libnettle8t64_3.10-1+b1 libnghttp2-14_1.64.0-1 libnghttp3-9_1.4.0-1+b1 libngtcp2-16_1.6.0-1 libngtcp2-crypto-gnutls8_1.6.0-1 libnsl2_1.3.0-3+b3 libnumber-compare-perl_0.03-3 libopengl-dev_1.7.0-1+b2 libopengl0_1.7.0-1+b2 libopenmm-dev_8.1.2+dfsg-1+b1 libopenmm8.1_8.1.2+dfsg-1+b1 libp11-kit0_0.25.5-2+b1 libpackage-stash-perl_0.40-1 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libparams-classify-perl_0.015-2+b4 libparams-util-perl_1.102-3+b1 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.44-4 libperl5.40_5.40.0-7 libperlio-gzip-perl_0.20-1+b4 libperlio-utf8-strict-perl_0.010-1+b3 libpipeline1_1.5.8-1 libproc-processtable-perl_0.636-1+b3 libproc2-0_2:4.0.4-6 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.12.7-1 libpython3.12-minimal_3.12.7-3 libpython3.12-stdlib_3.12.7-3 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librhash1_1.4.5-1 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b3 libselinux1_3.7-3+b1 libsemanage-common_3.7-2 libsemanage2_3.7-2+b1 libsensors-config_1:3.6.0-10 libsensors5_1:3.6.0-10+b1 libsepol2_3.7-1 libseqan2-dev_2.5.0~rc3+dfsg-1 libsereal-decoder-perl_5.004+ds-1+b3 libsereal-encoder-perl_5.004+ds-1+b3 libsframe1_2.43.1-5 libsimbody-dev_3.7+dfsg-3+b1 libsimbody3.7_3.7+dfsg-3+b1 libsimtkmolmodel-dev_3.1.0-4.1+b3 libsimtkmolmodel-plugins_3.1.0-4.1+b3 libsimtkmolmodel3.1t64_3.1.0-4.1+b3 libsm-dev_2:1.2.4-1 libsm6_2:1.2.4-1 libsmartcols1_2.40.2-11 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1+b1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-2 libstb-dev_0.0~git20240715.f7f20f39fe4f+ds-1 libstb0t64_0.0~git20240715.f7f20f39fe4f+ds-1 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 libstemmer0d_2.2.0-4+b2 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b3 libsub-quote-perl_2.006008-1 libsyntax-keyword-try-perl_0.30-1+b1 libsystemd0_257~rc2-3 libtasn1-6_4.19.0-3+b3 libterm-readkey-perl_2.38-2+b4 libtext-glob-perl_0.11-3 libtext-levenshteinxs-perl_0.03-5+b4 libtext-markdown-discount-perl_0.16-1+b3 libtext-xslate-perl_3.5.9-2+b1 libtime-duration-perl_1.21-2 libtime-moment-perl_0.44-2+b4 libtimedate-perl_2.3300-2 libtinfo6_6.5-2+b1 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3+b1 libtool_2.4.7-8 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-8 libubsan1_14.2.0-8 libuchardet0_0.0.8-1+b2 libudev1_257~rc2-3 libunicode-utf8-perl_0.62-2+b3 libunistring5_1.2-1+b1 liburi-perl_5.30-1 libuuid1_2.40.2-11 libuv1t64_1.48.0-7 libvariable-magic-perl_0.64-1+b1 libvulkan1_1.3.296.0-1 libwayland-client0_1.23.0-1+b1 libwayland-server0_1.23.0-1+b1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.8.10-2 libx11-data_2:1.8.10-2 libx11-dev_2:1.8.10-2 libx11-xcb1_2:1.8.10-2 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb-dri2-0_1.17.0-2+b1 libxcb-dri3-0_1.17.0-2+b1 libxcb-glx0_1.17.0-2+b1 libxcb-present0_1.17.0-2+b1 libxcb-randr0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-sync1_1.17.0-2+b1 libxcb-xfixes0_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b2 libxext6_2:1.3.4-1+b2 libxfixes-dev_1:6.0.0-2+b2 libxfixes3_1:6.0.0-2+b2 libxi-dev_2:1.8.2-1 libxi6_2:1.8.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-4 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxml2-utils_2.12.7+dfsg+really2.9.14-0.2+b1 libxmlb2_0.3.21-1 libxmu-dev_2:1.1.3-3+b3 libxmu-headers_2:1.1.3-3 libxmu6_2:1.1.3-3+b3 libxs-parse-keyword-perl_0.46-1+b1 libxshmfence1_1.3-1+b2 libxslt1.1_1.1.35-1.1+b1 libxt-dev_1:1.2.1-1.2+b1 libxt6t64_1:1.2.1-1.2+b1 libxxf86vm1_1:1.1.4-1+b3 libxxhash0_0.8.2-2+b2 libyaml-0-2_0.2.5-1+b2 libyaml-libyaml-perl_0.902.0+ds-2+b1 libz3-4_4.13.3-1 libzstd1_1.5.6+dfsg-1+b1 lintian_2.120.0 linux-libc-dev_6.11.9-1 login_1:4.16.0-2+really2.40.2-11 login.defs_1:4.16.0-5 logsave_1.47.1-1+b1 lzop_1.04-2+b1 m4_1.4.19-4 make_4.3-4.1+b1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mesa-libgallium_24.2.7-1 mount_2.40.2-11 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 netbase_6.4 openssl_3.3.2-2 openssl-provider-legacy_3.3.2-2 passwd_1:4.16.0-5 patch_2.7.6-7+b1 patchutils_0.4.2-1+b1 perl_5.40.0-7 perl-base_5.40.0-7 perl-modules-5.40_5.40.0-7 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 python3_3.12.7-1 python3-minimal_3.12.7-1 python3.12_3.12.7-3 python3.12-minimal_3.12.7-3 readline-common_8.2-5 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.24 sgml-base_1.31 sgml-data_2.0.11+nmu1 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4+b1 tao-pegtl-dev_3.2.7-1 tar_1.35+dfsg-3+b1 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28+b1 util-linux_2.40.2-11 uuid-dev_2.40.2-11 x11-common_1:7.7+23.1 x11proto-dev_2024.1-1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xsltproc_1.1.35-1.1+b1 xtrans-dev_1.4.0-1 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: macromoleculebuilder
Binary: libmmb-dev, libmmb4.0t64, mmb, mmb-common
Architecture: any all
Version: 4.0.0+dfsg-4
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders:  Andrius Merkys <merkys@debian.org>,
Homepage: https://simtk.org/projects/rnatoolbox
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/macromoleculebuilder
Vcs-Git: https://salsa.debian.org/debichem-team/macromoleculebuilder.git
Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev
Package-List:
 libmmb-dev deb libdevel optional arch=any
 libmmb4.0t64 deb libs optional arch=any
 mmb deb science optional arch=any
 mmb-common deb science optional arch=all
Checksums-Sha1:
 c37eccceb961f3e78d5b7145faf79ce425cf104e 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz
 5ec9443af510820c8530a5f772b528fd95359f5d 5764 macromoleculebuilder_4.0.0+dfsg-4.debian.tar.xz
Checksums-Sha256:
 2f50d11c886c36fd18476f942d7521536ded599584e0d83462a63ba5f9ccc449 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz
 0986931d668ff00f895da2493e6f748a1c223ce0d03620b323b9553d91d6cfc7 5764 macromoleculebuilder_4.0.0+dfsg-4.debian.tar.xz
Files:
 951370d06adf03fb858edccdee43c075 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz
 33d3ebe871ea617b438f7af4058c8d19 5764 macromoleculebuilder_4.0.0+dfsg-4.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=Yvdd
-----END PGP SIGNATURE-----

gpgv: Signature made Thu May  2 13:51:58 2024 UTC
gpgv:                using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv:                issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.0.0+dfsg-4.dsc: no acceptable signature found
dpkg-source: info: extracting macromoleculebuilder in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch
dpkg-source: info: applying 96da444290ab1af4385013c566079d381d8051b4.patch
dpkg-source: info: applying bf1ab1ebf49bb9e48f4f133e155f9315cc37079d.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package macromoleculebuilder
dpkg-buildpackage: info: source version 4.0.0+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
	-DCMAKE_BUILD_TYPE=Release \
	-DENABLE_LEPTON=OFF \
	-DGEMMI_DIR=/usr \
	-DOpenMM_INCLUDE_DIR=/usr/include \
	-DSimTKmolmodel=/usr \
	-DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0"
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DENABLE_LEPTON=OFF -DGEMMI_DIR=/usr -DOpenMM_INCLUDE_DIR=/usr/include -DSimTKmolmodel=/usr "-DCMAKE_CXX_FLAGS=-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0" ..
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMM: /usr/include
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1")
-- Found gemmi version 0.6.5
-- Looking for copy_file_range
-- Looking for copy_file_range - found
-- Looking for sendfile
-- Looking for sendfile - found
-- Configuring done (1.1s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    FETCHCONTENT_FULLY_DISCONNECTED
    SimTKmolmodel


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build
	cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f CMakeFiles/MMB.dir/build.make CMakeFiles/MMB.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles/MMB.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f CMakeFiles/MMB.dir/build.make CMakeFiles/MMB.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 12%] Building CXX object CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o
[ 12%] Building CXX object CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o
[ 12%] Building CXX object CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o
[ 12%] Building CXX object CMakeFiles/MMB.dir/src/Utils.cpp.o
[ 15%] Building CXX object CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o
[ 21%] Building CXX object CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o
[ 21%] Building CXX object CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o
[ 25%] Building CXX object CMakeFiles/MMB.dir/src/DensityContainer.cpp.o
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o -MF CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o.d -o CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o -c /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o -MF CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o.d -o CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o -c /<<PKGBUILDDIR>>/src/UnitCellParameters.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Utils.cpp.o -MF CMakeFiles/MMB.dir/src/Utils.cpp.o.d -o CMakeFiles/MMB.dir/src/Utils.cpp.o -c /<<PKGBUILDDIR>>/src/Utils.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o -MF CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o -c /<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o -MF CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o -c /<<PKGBUILDDIR>>/src/DisplacementContainer.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o -MF CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o -c /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o -MF CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o -c /<<PKGBUILDDIR>>/src/MoleculeContainer.cpp
/usr/bin/c++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityContainer.cpp.o -MF CMakeFiles/MMB.dir/src/DensityContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityContainer.cpp.o -c /<<PKGBUILDDIR>>/src/DensityContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/UnitCellParameters.h:3,
                 from /<<PKGBUILDDIR>>/src/UnitCellParameters.cpp:4:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/MoleculeContainer.h:6,
                 from /<<PKGBUILDDIR>>/src/MoleculeContainer.cpp:3:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/include/DisplacementContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/DisplacementContainer.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:22,
                 from /<<PKGBUILDDIR>>/src/Utils.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:4,
                 from /<<PKGBUILDDIR>>/include/DensityContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/DensityContainer.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:14:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:22,
                 from /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:22,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
In file included from /<<PKGBUILDDIR>>/include/ConstraintContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/MoleculeContainer.h:8:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/MoleculeContainer.cpp: In constructor ‘CustomMolecule::CustomMolecule(std::vector<std::vector<SimTK::String> >, SimTK::DuMMForceFieldSubsystem&)’:
/<<PKGBUILDDIR>>/src/MoleculeContainer.cpp:324:15: warning: unused variable ‘myAngle1’ [-Wunused-variable]
  324 |         Angle myAngle1 = 180*Deg2Rad; // this is a bond angle
      |               ^~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:290:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  290 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:292:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  292 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘ResidueID::ResidueID(SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:321:14: warning: unused variable ‘endChar’ [-Wunused-variable]
  321 |         char endChar = *(inputString.substr(stringLength-1, 1)).c_str();
      |              ^~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:386:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  386 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void Interface::print()’:
/<<PKGBUILDDIR>>/include/Utils.h:666:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  666 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:670:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  670 |                    for (int i = 0; i < Chains.size(); i ++) {
      |                                    ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: At global scope:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:38:9: error: ‘seqan’ does not name a type
   38 | typedef seqan::String<TChar> TSequence;                // sequence type
      |         ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:39:9: error: ‘seqan’ does not name a type
   39 | typedef seqan::Align<TSequence, seqan::ArrayGaps> TAlign;
      |         ^~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:318:98: error: ‘TAlign’ has not been declared
  318 |     int getCorrespondingMutationInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align,Mutation mutationInOtherBiopolymer, Mutation & mutationInCurrentBiopolymer);
      |                                                                                                  ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:319:97: error: ‘TAlign’ has not been declared
  319 |     int getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align, ResidueID residueIdInOtherBiopolymerClass, ResidueID & correspondingResidueInOtherBiopolymerClass);
      |                                                                                                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: At global scope:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:38:9: error: ‘seqan’ does not name a type
   38 | typedef seqan::String<TChar> TSequence;                // sequence type
      |         ^~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:39:9: error: ‘seqan’ does not name a type
   39 | typedef seqan::Align<TSequence, seqan::ArrayGaps> TAlign;
      |         ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1308:9: warning:   when initialized here [-Wreorder]
 1308 |         MMBAtomInfo(String myChain, ResidueID myResidueID, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In constructor ‘MMBAtomInfo::MMBAtomInfo(SimTK::String, ResidueID, SimTK::ResidueInfo::Index, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1294:16: warning: ‘MMBAtomInfo::chain’ will be initialized after [-Wreorder]
 1294 |         String chain;
      |                ^~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1292:19: warning:   ‘ResidueID MMBAtomInfo::residueID’ [-Wreorder]
 1292 |         ResidueID residueID;
      |                   ^~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:1314:9: warning:   when initialized here [-Wreorder]
 1314 |         MMBAtomInfo(String myChain, ResidueID myResidueID, ResidueInfo::Index myResidueIndex, String myAtomName) :
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:318:98: error: ‘TAlign’ has not been declared
  318 |     int getCorrespondingMutationInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align,Mutation mutationInOtherBiopolymer, Mutation & mutationInCurrentBiopolymer);
      |                                                                                                  ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:319:97: error: ‘TAlign’ has not been declared
  319 |     int getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align, ResidueID residueIdInOtherBiopolymerClass, ResidueID & correspondingResidueInOtherBiopolymerClass);
      |                                                                                                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘void InterfaceContainer::addInterface(std::vector<SimTK::String>, double, SimTK::String)’:
/<<PKGBUILDDIR>>/include/Utils.h:1379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SimTK::String>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1379 |             for (int i = 0; i < myChains.size(); i++) {myInterface.Chains.push_back( myChains[i]);}  myInterface.Depth = myDepth; myInterface.MobilizerString = myMobilizerString; interfaceVector.push_back(myInterface); };
      |                             ~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: At global scope:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:38:9: error: ‘seqan’ does not name a type
   38 | typedef seqan::String<TChar> TSequence;                // sequence type
      |         ^~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:39:9: error: ‘seqan’ does not name a type
   39 | typedef seqan::Align<TSequence, seqan::ArrayGaps> TAlign;
      |         ^~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:318:98: error: ‘TAlign’ has not been declared
  318 |     int getCorrespondingMutationInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align,Mutation mutationInOtherBiopolymer, Mutation & mutationInCurrentBiopolymer);
      |                                                                                                  ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:319:97: error: ‘TAlign’ has not been declared
  319 |     int getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align, ResidueID residueIdInOtherBiopolymerClass, ResidueID & correspondingResidueInOtherBiopolymerClass);
      |                                                                                                 ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:12:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: At global scope:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:38:9: error: ‘seqan’ does not name a type
   38 | typedef seqan::String<TChar> TSequence;                // sequence type
      |         ^~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:39:9: error: ‘seqan’ does not name a type
   39 | typedef seqan::Align<TSequence, seqan::ArrayGaps> TAlign;
      |         ^~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: At global scope:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:38:9: error: ‘seqan’ does not name a type
   38 | typedef seqan::String<TChar> TSequence;                // sequence type
      |         ^~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:39:9: error: ‘seqan’ does not name a type
   39 | typedef seqan::Align<TSequence, seqan::ArrayGaps> TAlign;
      |         ^~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:318:98: error: ‘TAlign’ has not been declared
  318 |     int getCorrespondingMutationInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align,Mutation mutationInOtherBiopolymer, Mutation & mutationInCurrentBiopolymer);
      |                                                                                                  ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:319:97: error: ‘TAlign’ has not been declared
  319 |     int getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align, ResidueID residueIdInOtherBiopolymerClass, ResidueID & correspondingResidueInOtherBiopolymerClass);
      |                                                                                                 ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:318:98: error: ‘TAlign’ has not been declared
  318 |     int getCorrespondingMutationInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align,Mutation mutationInOtherBiopolymer, Mutation & mutationInCurrentBiopolymer);
      |                                                                                                  ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:319:97: error: ‘TAlign’ has not been declared
  319 |     int getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align, ResidueID residueIdInOtherBiopolymerClass, ResidueID & correspondingResidueInOtherBiopolymerClass);
      |                                                                                                 ^~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In function ‘bool letterIsPurine(char)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:51:14: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   51 |     return c == 'A' | c == 'G';
      |            ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In function ‘bool letterIsRNA(char)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:57:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   57 |         c == 'A' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:59:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   59 |         c == 'G' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:60:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   60 |         c == 'U'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In function ‘bool letterIsDNA(char)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:67:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   67 |         c == 'A' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:69:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   69 |         c == 'G' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:70:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   70 |         c == 'T'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In function ‘bool letterIsProtein(char)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:77:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   77 |         c == 'C' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:79:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   79 |         c == 'H' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:80:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   80 |         c == 'I'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:86:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   86 |         c == 'M' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:88:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   88 |         c == 'V' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:89:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   89 |         c == 'A'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:95:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   95 |         c == 'G' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:97:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   97 |         c == 'P' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:98:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
   98 |         c == 'T'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:104:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  104 |         c == 'R' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:106:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  106 |         c == 'Y' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:107:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  107 |         c == 'W'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:113:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  113 |         c == 'D' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:115:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  115 |         c == 'E' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:116:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  116 |         c == 'Q' |
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:117:11: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
  117 |         c == 'K'
      |         ~~^~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: At global scope:
/<<PKGBUILDDIR>>/include/Threading.h:7:9: error: ‘seqan’ does not name a type
    7 | typedef seqan::String<TChar> TSequence;                // sequence type
      |         ^~~~~
/<<PKGBUILDDIR>>/include/Threading.h:8:9: error: ‘seqan’ does not name a type
    8 | typedef seqan::Align<TSequence, seqan::ArrayGaps> TAlign;
      |         ^~~~~
/<<PKGBUILDDIR>>/src/DensityContainer.cpp: In member function ‘void DensityContainer::updateDensityStretch(int, const DensityStretch&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/DensityContainer.cpp:18:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   18 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:17:5: error: ‘TSequence’ does not name a type
   17 |     TSequence sequence;
      |     ^~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘void BiopolymerClass::modifyResidue(BiopolymerModification, SimTK::Compound, SimTK::DuMMForceFieldSubsystem&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:135:29: warning: unused variable ‘myOrdinality’ [-Wunused-variable]
  135 |         Ordinality::Residue myOrdinality(SimTK::Ordinality::Any);
      |                             ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:147:32: warning: unused variable ‘myBondMobility’ [-Wunused-variable]
  147 |         BondMobility::Mobility myBondMobility = stringToBondMobility("Rigid");
      |                                ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:24:8: error: ‘seqan’ does not name a type
   24 |        seqan::AlignmentStats alignmentStats;
      |        ^~~~~
/<<PKGBUILDDIR>>/include/Threading.h:25:8: error: ‘TAlign’ does not name a type
   25 |        TAlign align;
      |        ^~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:53:9: error: ‘seqan’ does not name a type
   53 |         seqan::AlignmentStats getAlignmentStats(){return alignmentStats;}
      |         ^~~~~
/<<PKGBUILDDIR>>/include/Threading.h:54:34: error: ‘seqan’ has not been declared
   54 |         void   setAlignmentStats(seqan::AlignmentStats myAlignmentStats){ alignmentStats = myAlignmentStats;}
      |                                  ^~~~~
/<<PKGBUILDDIR>>/include/Threading.h:54:56: error: expected ‘,’ or ‘...’ before ‘myAlignmentStats’
   54 |         void   setAlignmentStats(seqan::AlignmentStats myAlignmentStats){ alignmentStats = myAlignmentStats;}
      |                                                        ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:101:9: error: ‘TAlign’ does not name a type
  101 |         TAlign computeAlign(){
      |         ^~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::setAlignmentStats(int)’:
/<<PKGBUILDDIR>>/include/Threading.h:54:75: error: ‘alignmentStats’ was not declared in this scope; did you mean ‘AlignmentStats’?
   54 |         void   setAlignmentStats(seqan::AlignmentStats myAlignmentStats){ alignmentStats = myAlignmentStats;}
      |                                                                           ^~~~~~~~~~~~~~
      |                                                                           AlignmentStats
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:54:92: error: ‘myAlignmentStats’ was not declared in this scope; did you mean ‘AlignmentStats’?
   54 |         void   setAlignmentStats(seqan::AlignmentStats myAlignmentStats){ alignmentStats = myAlignmentStats;}
      |                                                                                            ^~~~~~~~~~~~~~~~
      |                                                                                            AlignmentStats
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::setLongSequences()’:
/<<PKGBUILDDIR>>/include/Threading.h:58:34: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
   58 |             threadingPartners[0].sequence = (threadingPartners[0].biopolymerClass.getSubSequence(threadingPartners[0].startResidue , threadingPartners[0].endResidue )).c_str();
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:59:34: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
   59 |             threadingPartners[1].sequence = (threadingPartners[1].biopolymerClass.getSubSequence(threadingPartners[1].startResidue , threadingPartners[1].endResidue )).c_str();
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/src/MobilizerContainer.cpp: In member function ‘void MobilizerContainer::addMobilizerDomainsInterfacesToVector(const std::vector<MobilizerDomainsInterface>&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:190:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  190 |             if( (dist <= it->range) &&
      |                 ~~~~~~~~~~~~~~~~~~~~^~
  191 |                 (it->domain1.contains(chain1, res1) && it->domain2.contains(chain2, res2)) ||
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:60:13: error: ‘computeAlign’ was not declared in this scope
   60 |             computeAlign(); // Just to make sure align is in sync with the new sequences
      |             ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:71:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   71 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:78:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   78 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::setShortSequences()’:
/<<PKGBUILDDIR>>/include/Threading.h:96:34: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
   96 |             threadingPartners[0].sequence = (threadingPartners[0].biopolymerClass.getSequence(threadingPartners[0].includedResidues)).c_str();
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:97:34: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
   97 |             threadingPartners[1].sequence = (threadingPartners[1].biopolymerClass.getSequence(threadingPartners[1].includedResidues)).c_str();
      |                                  ^~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:98:13: error: ‘computeAlign’ was not declared in this scope
   98 |             computeAlign(); // Just to make sure align is in sync with the new sequences
      |             ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::getCorrespondingResidue(ResidueID, ResidueID&, int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:156:45: error: ‘row’ was not declared in this scope; did you mean ‘seqan2::row’?
  156 |              int viewIndex = toViewPosition(row(align, queryBiopolymerIndex),querySourceIndex);
      |                                             ^~~
      |                                             seqan2::row
In file included from /usr/include/seqan/align.h:97,
                 from /<<PKGBUILDDIR>>/include/Utils.h:27:
/usr/include/seqan/align/align_base.h:372:1: note: ‘seqan2::row’ declared here
  372 | row(Align<TSource, TSpec> const & me,
      | ^~~
/<<PKGBUILDDIR>>/include/Threading.h:156:30: error: ‘toViewPosition’ was not declared in this scope; did you mean ‘seqan2::toViewPosition’?
  156 |              int viewIndex = toViewPosition(row(align, queryBiopolymerIndex),querySourceIndex);
      |                              ^~~~~~~~~~~~~~
      |                              seqan2::toViewPosition
In file included from /usr/include/seqan/align.h:89:
/usr/include/seqan/align/gaps_anchor.h:872:1: note: ‘seqan2::toViewPosition’ declared here
  872 | toViewPosition(Gaps<TSequence, AnchorGaps<TGapAnchors> > const & gaps, TPosition const sourcePosition)
      | ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:157:46: error: ‘toSourcePosition’ was not declared in this scope; did you mean ‘seqan2::toSourcePosition’?
  157 |              int correspondingSourceIndex =  toSourcePosition(row(align,correspondingBiopolymerIndex ) ,viewIndex);
      |                                              ^~~~~~~~~~~~~~~~
      |                                              seqan2::toSourcePosition
/usr/include/seqan/align/gaps_anchor.h:883:1: note: ‘seqan2::toSourcePosition’ declared here
  883 | toSourcePosition(Gaps<TSequence, AnchorGaps<TGapAnchors> > const & gaps,
      | ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:158:25: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
  158 |              if (String(seqan::row (align,correspondingBiopolymerIndex )[viewIndex]) == ("-")   ){
      |                         ^~~~~
      |                         seqan2
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘const void ThreadingStruct::printAlignmentStats()’:
/<<PKGBUILDDIR>>/include/Threading.h:168:27: warning: the address of ‘void* std::align(size_t, size_t, void*&, size_t&)’ will never be NULL [-Waddress]
  168 |              std::cout << align
      |                           ^~~~~
In file included from /usr/include/c++/14/memory:74,
                 from /usr/include/simbody/SimTKcommon/internal/ClonePtr.h:29,
                 from /usr/include/simbody/SimTKcommon/basics.h:44,
                 from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/14/bits/align.h:61:1: note: ‘void* std::align(size_t, size_t, void*&, size_t&)’ declared here
   61 | align(size_t __align, size_t __size, void*& __ptr, size_t& __space) noexcept
      | ^~~~~
/<<PKGBUILDDIR>>/include/Threading.h:169:50: error: ‘alignmentStats’ was not declared in this scope; did you mean ‘setAlignmentStats’?
  169 |                    << "score:               " << alignmentStats.alignmentScore << "\n"
      |                                                  ^~~~~~~~~~~~~~
      |                                                  setAlignmentStats
/<<PKGBUILDDIR>>/include/Threading.h: In constructor ‘ThreadingStruct::ThreadingStruct(BiopolymerClass, ResidueID, ResidueID, BiopolymerClass, ResidueID, ResidueID, double, bool)’:
/<<PKGBUILDDIR>>/include/Threading.h:199:38: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
  199 |                 threadingPartners[0].sequence = ""; threadingPartners[1].sequence = "";}
      |                                      ^~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:199:74: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
  199 |                 threadingPartners[0].sequence = ""; threadingPartners[1].sequence = "";}
      |                                                                          ^~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In constructor ‘ThreadingStruct::ThreadingStruct()’:
/<<PKGBUILDDIR>>/include/Threading.h:206:38: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
  206 |                 threadingPartners[0].sequence = ""; threadingPartners[1].sequence = "";}
      |                                      ^~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h:206:74: error: ‘std::array<ThreadingPartner, 2>::value_type’ {aka ‘struct ThreadingPartner’} has no member named ‘sequence’
  206 |                 threadingPartners[0].sequence = ""; threadingPartners[1].sequence = "";}
      |                                                                          ^~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: At global scope:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:22:9: error: ‘seqan’ does not name a type
   22 | typedef seqan::String<char> TSequence;                 // sequence type
      |         ^~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:23:9: error: ‘seqan’ does not name a type
   23 | typedef seqan::Align<TSequence,seqan::ArrayGaps> TAlign;
      |         ^~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:73:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘double AtomSpringContainer::calcRmsd(SimTK::State&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:65:12: warning: unused variable ‘myExtension’ [-Wunused-variable]
   65 |     double myExtension = 0.0;
      |            ^~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteAtomSpring(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:194:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AtomSpring>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  194 |     if(id < 0 || id >= atomSpringVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateAtomSpring(int, const AtomSpring&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:201:21: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<AtomSpring>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  201 |     if(id < 0 || id >= atomSpringVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘void BiopolymerClass::setPdbResidueNumbersFromResidueIDVector()’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:520:9: warning: unused variable ‘numResidues’ [-Wunused-variable]
  520 |     int numResidues = -1;
      |         ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteThreading(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:260:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  260 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateThreading(int, const ThreadingStruct&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:268:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  268 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateThreading(int, SimTK::String, ResidueID, ResidueID, SimTK::String, ResidueID, ResidueID, double, bool, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:279:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  279 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘void BiopolymerClass::renumberPdbResidues(ResidueID)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:551:9: warning: unused variable ‘myNewResidueNumberWithoutInsertionCode’ [-Wunused-variable]
  551 |     int myNewResidueNumberWithoutInsertionCode = firstResidueID.getResidueNumber() ;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteGappedThreading(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:441:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  441 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateGappedThreading(int, const ThreadingStruct&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:449:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  449 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateGappedThreading(int, SimTK::String, SimTK::String, double, bool, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:458:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  458 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::createSpringsFromGappedThreading(BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:482:9: error: ‘TAlign’ was not declared in this scope
  482 |         TAlign align = thread.computeAlign(); //setLongSequences also calls computeAlign, but we are being paranoid. Plus this gives us a convenient return value.
      |         ^~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:488:63: error: ‘struct ThreadingPartner’ has no member named ‘sequence’
  488 |         while ((aIndex < length(thread.updThreadingPartner(0).sequence)) &&
      |                                                               ^~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:488:26: error: ‘length’ was not declared in this scope
  488 |         while ((aIndex < length(thread.updThreadingPartner(0).sequence)) &&
      |                          ^~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:488:26: note: suggested alternatives:
In file included from /usr/include/seqan/align.h:145:
/usr/include/seqan/align/dp_matrix.h:419:1: note:   ‘seqan2::length’
  419 | length(DPMatrix_<TValue, TMatrixSpec, THost> const & dpMatrix)
      | ^~~~~~
In file included from /usr/include/gemmi/seqid.hpp:12,
                 from /usr/include/gemmi/metadata.hpp:14,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:43,
                 from /usr/include/molmodel/SimTKmolmodel.h:53,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23:
/usr/include/gemmi/util.hpp:139:15: note:   ‘gemmi::impl::length’
  139 | inline size_t length(const std::string& s) { return s.length(); }
      |               ^~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:489:63: error: ‘struct ThreadingPartner’ has no member named ‘sequence’
  489 |                (bIndex < length(thread.updThreadingPartner(1).sequence)))
      |                                                               ^~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:491:25: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
  491 |             if ((String(seqan::row (align,0)[i]).compare("-")  != 0  )  &&
      |                         ^~~~~
      |                         seqan2
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:492:24: error: expected primary-expression before ‘(’ token
  492 |                 (String(seqan::row (align,1)[i]).compare("-")  != 0  ))
      |                        ^
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:492:25: error: ‘seqan’ is not a class, namespace, or enumeration
  492 |                 (String(seqan::row (align,1)[i]).compare("-")  != 0  ))
      |                         ^~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:541:24: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
  541 |             if (String(seqan::row (align,0)[i]).compare("-")  != 0  ) {
      |                        ^~~~~
      |                        seqan2
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:544:24: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
  544 |             if (String(seqan::row (align,1)[i]).compare("-")  != 0  ) {
      |                        ^~~~~
      |                        seqan2
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘bool BiopolymerClass::hasAtom(ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:1053:9: warning: unused variable ‘myResidueIndex’ [-Wunused-variable]
 1053 |     int myResidueIndex = getResidueIndex(myResidueID);
      |         ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘void BiopolymerClass::addGeneralSterics(SimTK::GeneralContactSubsystem&, SimTK::ContactSetIndex, SimTK::HuntCrossleyForce&, SimTK::SimbodyMatterSubsystem&, double, double, ResidueID, ResidueID, bool, bool)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:1437:12: warning: unused variable ‘huntCrossleyDissipation’ [-Wunused-variable]
 1437 |     double huntCrossleyDissipation  =.0;
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘ResidueID BiopolymerClass::sum(ResidueID, int) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2172:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2172 |         if ((newResidueIndex < 0) || (newResidueIndex >= residueIDVector.size())) {
      |                                       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: At global scope:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2276:111: error: ‘TAlign’ has not been declared
 2276 | int BiopolymerClass::getCorrespondingMutationInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align,Mutation mutationInOtherBiopolymer, Mutation & mutationInCurrentBiopolymer){
      |                                                                                                               ^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2296:111: error: ‘TAlign’ has not been declared
 2296 | int  BiopolymerClass::getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass &otherBiopolymerClass, TAlign align, ResidueID residueIdInOtherBiopolymerClass , ResidueID & correspondingResidueIdInCurrentBiopolymerClass  ){
      |                                                                                                               ^~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::getCorrespondingResidueInCurrentBiopolymer(const BiopolymerClass&, int, ResidueID, ResidueID&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2314:29: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
 2314 |                  if (String(seqan::row (align,0)[i]).compare("-")  == 0 ) {
      |                             ^~~~~
      |                             seqan2
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2318:35: error: expected primary-expression before ‘(’ token
 2318 |                  } else if (String(seqan::row (align,1)[i]).compare("-")  == 0  ) {
      |                                   ^
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2318:36: error: ‘seqan’ is not a class, namespace, or enumeration
 2318 |                  } else if (String(seqan::row (align,1)[i]).compare("-")  == 0  ) {
      |                                    ^~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2333:24: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
 2333 |             if (String(seqan::row (align,0)[i]).compare("-")  != 0  ) {
      |                        ^~~~~
      |                        seqan2
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2336:24: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
 2336 |             if (String(seqan::row (align,1)[i]).compare("-")  != 0  ) {
      |                        ^~~~~
      |                        seqan2
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:16:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addIntraChainInterfaceResidues(double, SimTK::String, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4682:61:   required from here
 4682 |     myResidueStretchContainer.addIntraChainInterfaceResidues( radius, chain, *this );
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:283:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  283 |             for (int i = 0; i < chainAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:300:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  300 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:257:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  257 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:256:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  256 |     const char* spaces = " \t";
      |                 ^~~~~~
make[3]: *** [CMakeFiles/MMB.dir/build.make:138: CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:257:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  257 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:256:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  256 |     const char* spaces = " \t";
      |                 ^~~~~~
make[3]: *** [CMakeFiles/MMB.dir/build.make:180: CMakeFiles/MMB.dir/src/DensityContainer.cpp.o] Error 1
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:257:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  257 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:256:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  256 |     const char* spaces = " \t";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:257:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  257 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:256:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  256 |     const char* spaces = " \t";
      |                 ^~~~~~
make[3]: *** [CMakeFiles/MMB.dir/build.make:152: CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o] Error 1
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2584:54:   required from ‘void BiopolymerClass::selectivelyRemoveResidueStretchFromContainer(const ResidueStretch&, ResidueStretchContainer<ResidueStretchType>&) [with ResidueStretchType = MobilizerStretch]’
 2584 |     residueStretchContainer.printResidueStretchVector();
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2588:181:   required from here
 2588 | template void BiopolymerClass::selectivelyRemoveResidueStretchFromContainer(const ResidueStretch &residueStretch, ResidueStretchContainer<MobilizerStretch> &residueStretchContainer);
      |                                                                                                                                                                                     ^
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MobilizerStretch>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:257:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  257 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:256:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  256 |     const char* spaces = " \t";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:320:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addIntraChainInterfaceResidues(double, SimTK::String, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  320 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addResidueStretchToVector(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4682:61:   required from here
 4682 |     myResidueStretchContainer.addIntraChainInterfaceResidues( radius, chain, *this );
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: *** [CMakeFiles/MMB.dir/build.make:124: CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o] Error 1
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4827:54:   required from ‘void BiopolymerClassContainer::selectivelyRemoveRigidMobilizerStretchesFromResidueStretchContainer(MobilizerContainer&, ResidueStretchContainer<ResidueStretchType>&) [with ResidueStretchType = DensityStretch]’
 4827 |     residueStretchContainer.printResidueStretchVector();
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4830:213:   required from here
 4830 | template void BiopolymerClassContainer::selectivelyRemoveRigidMobilizerStretchesFromResidueStretchContainer(MobilizerContainer &mobilizerContainer, ResidueStretchContainer<DensityStretch> &residueStretchContainer);
      |                                                                                                                                                                                                                     ^
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:257:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  257 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:256:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  256 |     const char* spaces = " \t";
      |                 ^~~~~~
make[3]: *** [CMakeFiles/MMB.dir/build.make:96: CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:93: CMakeFiles/MMB.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[1]: *** [Makefile:139: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:9: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-11-23T10:29:42Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: binary
Build-Space: 143704
Build-Time: 24
Distribution: sid
Fail-Stage: build
Host Architecture: arm64
Install-Time: 48
Job: /tmp/debusine-fetch-exec-upload-792_jyht/macromoleculebuilder_4.0.0+dfsg-4.dsc
Machine Architecture: arm64
Package: macromoleculebuilder
Package-Time: 103
Source-Version: 4.0.0+dfsg-4
Space: 143704
Status: attempted
Version: 4.0.0+dfsg-4
--------------------------------------------------------------------------------
Finished at 2024-11-23T10:29:42Z
Build needed 00:01:43, 143704k disk space

Relations

Relation Direction Type Name
relates-to Source package macromoleculebuilder_4.0.0+dfsg-4
relates-to Binary package seqan-apps-dbgsym_2.5.0~rc3+dfsg-1_arm64
relates-to Binary package seqan-apps_2.5.0~rc3+dfsg-1_arm64
relates-to Binary package libseqan2-dev_2.5.0~rc3+dfsg-1_all

build log System… build a package… - 6 hours, 23 minutes ago 0 minutes
BETA