Artifact shasta_0.12.0-1_arm64-2024-11-23T10:27:59Z

Metadata
bd_uninstallable: null
filename: shasta_0.12.0-1_arm64-2024-11-23T10:27:59Z.build
source: shasta
version: 0.12.0-1

File

shasta_0.12.0-1_arm64-2024-11-23T10:27:59Z.build
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sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-10.freexian.com

+==============================================================================+
| shasta 0.12.0-1 (arm64)                      Sat, 23 Nov 2024 10:27:59 +0000 |
+==============================================================================+

Package: shasta
Version: 0.12.0-1
Source Version: 0.12.0-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary

I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/1053884/system.tar.xz to /tmp/tmp.sbuild.tt6kx_x91P...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


rm -f /etc/resolv.conf
----------------------


I: Finished running 'rm -f /etc/resolv.conf'.

Finished processing commands.
--------------------------------------------------------------------------------
Copying /tmp/debusine-fetch-exec-upload-oc8pd9wm/seqan-apps-dbgsym_2.5.0~rc3+dfsg-1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-oc8pd9wm/seqan-apps_2.5.0~rc3+dfsg-1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-oc8pd9wm/libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/shasta-Azwk3k/resolver-iAEPVz' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ InRelease
Ign:1 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ InRelease
Get:2 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ Release [606 B]
Get:2 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ Release [606 B]
Get:3 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ Release.gpg
Ign:3 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ Release.gpg
Get:4 file:/build/shasta-Azwk3k/resolver-oTO9YZ/apt_archive ./ Packages [4687 B]
Get:5 http://deb.debian.org/debian sid InRelease [202 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9958 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4913 kB]
Fetched 15.1 MB in 3s (6024 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt base-files libapt-pkg6.0t64 libxml-sax-perl
4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 2411 kB of archives.
After this operation, 206 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main arm64 base-files arm64 13.6 [72.9 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.14 [969 kB]
Get:3 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.14 [1316 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../base-files_13.6_arm64.deb ...
Unpacking base-files (13.6) over (13.5) ...
Setting up base-files (13.6) ...
Updating /root/.profile to current default.
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Preparing to unpack .../libapt-pkg6.0t64_2.9.14_arm64.deb ...
Unpacking libapt-pkg6.0t64:arm64 (2.9.14) over (2.9.12) ...
Setting up libapt-pkg6.0t64:arm64 (2.9.14) ...
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Preparing to unpack .../archives/apt_2.9.14_arm64.deb ...
Unpacking apt (2.9.14) over (2.9.12) ...
Setting up apt (2.9.14) ...
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Preparing to unpack .../libxml-sax-perl_1.02+dfsg-4_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-4) over (1.02+dfsg-3) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/tmp/debusine-fetch-exec-upload-oc8pd9wm/shasta_0.12.0-1.dsc exists in /tmp/debusine-fetch-exec-upload-oc8pd9wm; copying to chroot
I: NOTICE: Log filtering will replace 'build/shasta-Azwk3k/shasta-0.12.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/shasta-Azwk3k' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, cmake, patchelf, chrpath, libboost-all-dev, libpng-dev, ncbi-blast+, python3-dev, python3-sphinx, libpython3-dev, libseqan2-dev, libspoa-dev, python3-pybind11, libcereal-dev, libblas-dev, liblapack-dev, gfortran, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, cmake, patchelf, chrpath, libboost-all-dev, libpng-dev, ncbi-blast+, python3-dev, python3-sphinx, libpython3-dev, libseqan2-dev, libspoa-dev, python3-pybind11, libcereal-dev, libblas-dev, liblapack-dev, gfortran, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [890 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [883 B]
Fetched 2382 B in 0s (202 kB/s)
Reading package lists...
Ign:1 file:/<<BUILDDIR>>/resolver-oTO9YZ/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-oTO9YZ/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-oTO9YZ/apt_archive ./ Release [606 B]
Ign:3 file:/<<BUILDDIR>>/resolver-oTO9YZ/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  adduser autoconf automake autopoint autotools-dev build-essential chrpath
  cmake cmake-data cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
  debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism
  docutils-common dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
  g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
  gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu
  gfortran-aarch64-linux-gnu ibverbs-providers icu-devtools libamd-comgr2
  libamdhip64-5 libarchive13t64 libasan8 libblas-dev libblas3 libboost-all-dev
  libboost-atomic-dev libboost-atomic1.83-dev libboost-atomic1.83.0
  libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64
  libboost-container-dev libboost-container1.83-dev libboost-container1.83.0
  libboost-context-dev libboost-context1.83-dev libboost-context1.83.0
  libboost-coroutine-dev libboost-coroutine1.83-dev libboost-coroutine1.83.0
  libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0
  libboost-dev libboost-exception-dev libboost-exception1.83-dev
  libboost-fiber-dev libboost-fiber1.83-dev libboost-fiber1.83.0
  libboost-filesystem-dev libboost-filesystem1.83-dev
  libboost-filesystem1.83.0 libboost-graph-dev libboost-graph-parallel-dev
  libboost-graph-parallel1.83-dev libboost-graph-parallel1.83.0
  libboost-graph1.83-dev libboost-graph1.83.0 libboost-iostreams-dev
  libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-json-dev
  libboost-json1.83-dev libboost-json1.83.0 libboost-locale-dev
  libboost-locale1.83-dev libboost-locale1.83.0 libboost-log-dev
  libboost-log1.83-dev libboost-log1.83.0 libboost-math-dev
  libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev
  libboost-mpi-python-dev libboost-mpi-python1.83-dev
  libboost-mpi-python1.83.0 libboost-mpi1.83-dev libboost-mpi1.83.0
  libboost-nowide-dev libboost-nowide1.83-dev libboost-nowide1.83.0
  libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0
  libboost-program-options-dev libboost-program-options1.83-dev
  libboost-program-options1.83.0 libboost-python-dev libboost-python1.83-dev
  libboost-python1.83.0 libboost-random-dev libboost-random1.83-dev
  libboost-random1.83.0 libboost-regex-dev libboost-regex1.83-dev
  libboost-regex1.83.0 libboost-serialization-dev
  libboost-serialization1.83-dev libboost-serialization1.83.0
  libboost-stacktrace-dev libboost-stacktrace1.83-dev
  libboost-stacktrace1.83.0 libboost-system-dev libboost-system1.83-dev
  libboost-system1.83.0 libboost-test-dev libboost-test1.83-dev
  libboost-test1.83.0 libboost-thread-dev libboost-thread1.83-dev
  libboost-thread1.83.0 libboost-timer-dev libboost-timer1.83-dev
  libboost-timer1.83.0 libboost-tools-dev libboost-type-erasure-dev
  libboost-type-erasure1.83-dev libboost-type-erasure1.83.0 libboost-url-dev
  libboost-url1.83-dev libboost-url1.83.0 libboost-wave-dev
  libboost-wave1.83-dev libboost-wave1.83.0 libboost1.83-dev
  libboost1.83-tools-dev libc-dev-bin libc6-dev libcbor0.10 libcc1-0
  libcereal-dev libcrypt-dev libcurl4t64 libdebhelper-perl libdrm-amdgpu1
  libdrm-common libdrm2 libedit2 libelf1t64 libevent-2.1-7t64
  libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64
  libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev
  libfabric1 libfakeroot libfido2-1 libfile-stripnondeterminism-perl
  libgcc-14-dev libgfortran-14-dev libgfortran5 libhsa-runtime64-1 libhsakmt1
  libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 libibumad3
  libibverbs-dev libibverbs1 libicu-dev libisl23 libitm1 libjs-jquery
  libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26
  liblapack-dev liblapack3 libllvm17t64 liblmdb0 liblsan0 libltdl-dev libltdl7
  libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libmunge2
  libncursesw6 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnsl2 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3t64 libpciaccess0
  libpmix-dev libpmix2t64 libpng-dev libpng16-16t64 libproc2-0 libpython3-dev
  libpython3-stdlib libpython3.12-dev libpython3.12-minimal
  libpython3.12-stdlib libpython3.12t64 librdmacm1t64 librhash1 libseqan2-dev
  libspoa-dev libspoa7.0.0 libstdc++-14-dev libtirpc-common libtirpc3t64
  libtool libtsan2 libubsan1 libucx0 libuv1t64 libx11-6 libx11-data libxau6
  libxcb1 libxdmcp6 libxext6 libxnvctrl0 libz3-4 linux-libc-dev m4 media-types
  mpi-default-bin mpi-default-dev ncbi-blast+ ncbi-data ocl-icd-libopencl1
  openmpi-bin openmpi-common openssh-client patchelf po-debconf procps
  pybind11-dev python-babel-localedata python3 python3-alabaster
  python3-autocommand python3-babel python3-certifi python3-chardet
  python3-charset-normalizer python3-defusedxml python3-dev python3-docutils
  python3-idna python3-imagesize python3-inflect python3-jaraco.context
  python3-jaraco.functools python3-jaraco.text python3-jinja2
  python3-markupsafe python3-minimal python3-more-itertools python3-packaging
  python3-pkg-resources python3-pybind11 python3-pygments python3-requests
  python3-roman python3-setuptools python3-snowballstemmer python3-sphinx
  python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp
  python3.12 python3.12-dev python3.12-minimal rapidjson-dev rpcsvc-proto
  sgml-base sphinx-common xml-core zlib1g-dev
Suggested packages:
  liblocale-gettext-perl cron quota autoconf-archive gnu-standards
  autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc
  gcc-14-locales cpp-14-doc dh-make flit python3-build python3-installer
  python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
  gdb-aarch64-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev lrzip
  liblapack-doc libboost-doc graphviz libboost1.83-doc gccxml
  libboost-contract1.83-dev libmpfrc++-dev libntl-dev xsltproc doxygen
  docbook-xml docbook-xsl default-jdk fop libc-devtools glibc-doc icu-doc
  libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils libstdc++-14-doc
  gcj-jdk m4-doc opencl-icd keychain libpam-ssh monkeysphere ssh-askpass
  libmail-box-perl pybind11-doc python3-doc python3-tk python3-venv
  python-charset-normalizer-doc docutils-doc fonts-linuxlibertine
  | ttf-linux-libertine texlive-lang-french texlive-latex-base
  texlive-latex-recommended python-jinja2-doc python-pygments-doc
  ttf-bitstream-vera python3-cryptography python3-openssl python3-socks
  python-requests-doc python-setuptools-doc python3-stemmer dvipng dvisvgm
  fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax
  python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra
  texlive-fonts-recommended texlive-latex-extra texlive-plain-generic
  python3-brotli python3.12-venv python3.12-doc binfmt-support rapidjson-doc
  sgml-base-doc
Recommended packages:
  manpages manpages-dev libarchive-cpio-perl javascript-common libjson-xs-perl
  libgpm2 libcoarrays-openmpi-dev libpng-tools xauth libmail-sendmail-perl
  psmisc linux-sysctl-defaults libeigen3-dev libpaper-utils python3-pil
  python3-numpy
The following NEW packages will be installed:
  adduser autoconf automake autopoint autotools-dev build-essential chrpath
  cmake cmake-data cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
  debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism
  docutils-common dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
  g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
  gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu
  gfortran-aarch64-linux-gnu ibverbs-providers icu-devtools libamd-comgr2
  libamdhip64-5 libarchive13t64 libasan8 libblas-dev libblas3 libboost-all-dev
  libboost-atomic-dev libboost-atomic1.83-dev libboost-atomic1.83.0
  libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64
  libboost-container-dev libboost-container1.83-dev libboost-container1.83.0
  libboost-context-dev libboost-context1.83-dev libboost-context1.83.0
  libboost-coroutine-dev libboost-coroutine1.83-dev libboost-coroutine1.83.0
  libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0
  libboost-dev libboost-exception-dev libboost-exception1.83-dev
  libboost-fiber-dev libboost-fiber1.83-dev libboost-fiber1.83.0
  libboost-filesystem-dev libboost-filesystem1.83-dev
  libboost-filesystem1.83.0 libboost-graph-dev libboost-graph-parallel-dev
  libboost-graph-parallel1.83-dev libboost-graph-parallel1.83.0
  libboost-graph1.83-dev libboost-graph1.83.0 libboost-iostreams-dev
  libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-json-dev
  libboost-json1.83-dev libboost-json1.83.0 libboost-locale-dev
  libboost-locale1.83-dev libboost-locale1.83.0 libboost-log-dev
  libboost-log1.83-dev libboost-log1.83.0 libboost-math-dev
  libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev
  libboost-mpi-python-dev libboost-mpi-python1.83-dev
  libboost-mpi-python1.83.0 libboost-mpi1.83-dev libboost-mpi1.83.0
  libboost-nowide-dev libboost-nowide1.83-dev libboost-nowide1.83.0
  libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0
  libboost-program-options-dev libboost-program-options1.83-dev
  libboost-program-options1.83.0 libboost-python-dev libboost-python1.83-dev
  libboost-python1.83.0 libboost-random-dev libboost-random1.83-dev
  libboost-random1.83.0 libboost-regex-dev libboost-regex1.83-dev
  libboost-regex1.83.0 libboost-serialization-dev
  libboost-serialization1.83-dev libboost-serialization1.83.0
  libboost-stacktrace-dev libboost-stacktrace1.83-dev
  libboost-stacktrace1.83.0 libboost-system-dev libboost-system1.83-dev
  libboost-system1.83.0 libboost-test-dev libboost-test1.83-dev
  libboost-test1.83.0 libboost-thread-dev libboost-thread1.83-dev
  libboost-thread1.83.0 libboost-timer-dev libboost-timer1.83-dev
  libboost-timer1.83.0 libboost-tools-dev libboost-type-erasure-dev
  libboost-type-erasure1.83-dev libboost-type-erasure1.83.0 libboost-url-dev
  libboost-url1.83-dev libboost-url1.83.0 libboost-wave-dev
  libboost-wave1.83-dev libboost-wave1.83.0 libboost1.83-dev
  libboost1.83-tools-dev libc-dev-bin libc6-dev libcbor0.10 libcc1-0
  libcereal-dev libcrypt-dev libcurl4t64 libdebhelper-perl libdrm-amdgpu1
  libdrm-common libdrm2 libedit2 libelf1t64 libevent-2.1-7t64
  libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64
  libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev
  libfabric1 libfakeroot libfido2-1 libfile-stripnondeterminism-perl
  libgcc-14-dev libgfortran-14-dev libgfortran5 libhsa-runtime64-1 libhsakmt1
  libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 libibumad3
  libibverbs-dev libibverbs1 libicu-dev libisl23 libitm1 libjs-jquery
  libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26
  liblapack-dev liblapack3 libllvm17t64 liblmdb0 liblsan0 libltdl-dev libltdl7
  libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libmunge2
  libncursesw6 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
  libnsl2 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3t64 libpciaccess0
  libpmix-dev libpmix2t64 libpng-dev libpng16-16t64 libproc2-0 libpython3-dev
  libpython3-stdlib libpython3.12-dev libpython3.12-minimal
  libpython3.12-stdlib libpython3.12t64 librdmacm1t64 librhash1 libseqan2-dev
  libspoa-dev libspoa7.0.0 libstdc++-14-dev libtirpc-common libtirpc3t64
  libtool libtsan2 libubsan1 libucx0 libuv1t64 libx11-6 libx11-data libxau6
  libxcb1 libxdmcp6 libxext6 libxnvctrl0 libz3-4 linux-libc-dev m4 media-types
  mpi-default-bin mpi-default-dev ncbi-blast+ ncbi-data ocl-icd-libopencl1
  openmpi-bin openmpi-common openssh-client patchelf po-debconf procps
  pybind11-dev python-babel-localedata python3 python3-alabaster
  python3-autocommand python3-babel python3-certifi python3-chardet
  python3-charset-normalizer python3-defusedxml python3-dev python3-docutils
  python3-idna python3-imagesize python3-inflect python3-jaraco.context
  python3-jaraco.functools python3-jaraco.text python3-jinja2
  python3-markupsafe python3-minimal python3-more-itertools python3-packaging
  python3-pkg-resources python3-pybind11 python3-pygments python3-requests
  python3-roman python3-setuptools python3-snowballstemmer python3-sphinx
  python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp
  python3.12 python3.12-dev python3.12-minimal rapidjson-dev rpcsvc-proto
  sbuild-build-depends-main-dummy sgml-base sphinx-common xml-core zlib1g-dev
0 upgraded, 306 newly installed, 0 to remove and 0 not upgraded.
Need to get 245 MB/247 MB of archives.
After this operation, 1312 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-oTO9YZ/apt_archive ./ libseqan2-dev 2.5.0~rc3+dfsg-1 [1222 kB]
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1004 B]
Get:3 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2+b1 [125 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-3 [671 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B]
Get:15 http://deb.debian.org/debian sid/main arm64 python3 arm64 3.12.7-1 [27.8 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 sgml-base all 1.31 [15.4 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 adduser all 3.137 [140 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-6 [872 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libcbor0.10 arm64 0.10.2-2 [27.4 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libfido2-1 arm64 1.15.0-1+b1 [74.3 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 openssh-client arm64 1:9.9p1-3 [928 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.9-1 [2459 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b2 [680 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8 [9166 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-8 [1284 B]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:41 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-8 [42.2 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-8 [24.2 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-8 [2579 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-8 [1161 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-8 [2386 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-8 [1039 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-8 [1442 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-8 [2365 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8 [17.7 MB]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-8 [519 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:53 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-8 [2267 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8 [10.1 MB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-8 [20.2 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:57 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:58 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:59 http://deb.debian.org/debian sid/main arm64 chrpath arm64 0.18-1 [13.2 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 cmake-data all 3.31.1-1 [2267 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 cmake arm64 3.31.1-1 [9873 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:72 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 dh-exec arm64 0.30+b1 [25.8 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:83 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20241024 [109 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 xml-core all 0.19 [20.1 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B]
Get:98 http://deb.debian.org/debian sid/main arm64 gfortran arm64 4:14.2.0-1 [1424 B]
Get:99 http://deb.debian.org/debian sid/main arm64 libnl-3-200 arm64 3.7.0-0.3+b1 [57.0 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libnl-route-3-200 arm64 3.7.0-0.3+b1 [167 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libibverbs1 arm64 52.0-2+b1 [58.8 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 ibverbs-providers arm64 52.0-2+b1 [321 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libllvm17t64 arm64 1:17.0.6-18 [21.3 MB]
Get:106 http://deb.debian.org/debian sid/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB]
Get:107 http://deb.debian.org/debian sid/main arm64 libdrm-common all 2.4.123-1 [8084 B]
Get:108 http://deb.debian.org/debian sid/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libhsakmt1 arm64 6.1.2+ds-1 [56.9 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libhsa-runtime64-1 arm64 6.1.2-2 [300 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libamdhip64-5 arm64 5.7.1-5 [8823 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 libblas-dev arm64 3.12.0-4 [106 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libboost1.83-dev arm64 1.83.0-3.2+b1 [10.6 MB]
Get:117 http://deb.debian.org/debian sid/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2+b1 [234 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2+b1 [234 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libboost-atomic-dev arm64 1.83.0.2+b2 [3892 B]
Get:120 http://deb.debian.org/debian sid/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-3.2+b1 [239 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libboost-chrono1.83-dev arm64 1.83.0-3.2+b1 [245 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B]
Get:123 http://deb.debian.org/debian sid/main arm64 libboost-container1.83.0 arm64 1.83.0-3.2+b1 [259 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libboost-container1.83-dev arm64 1.83.0-3.2+b1 [265 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libboost-container-dev arm64 1.83.0.2+b2 [4064 B]
Get:126 http://deb.debian.org/debian sid/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2+b1 [230 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2+b1 [325 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2+b1 [374 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2+b1 [239 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2+b1 [231 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2+b1 [232 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libboost-thread1.83.0 arm64 1.83.0-3.2+b1 [266 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libboost-thread1.83-dev arm64 1.83.0-3.2+b1 [276 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 libboost-context1.83.0 arm64 1.83.0-3.2+b1 [232 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 libboost-context1.83-dev arm64 1.83.0-3.2+b1 [233 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libboost-context-dev arm64 1.83.0.2+b2 [3792 B]
Get:137 http://deb.debian.org/debian sid/main arm64 libboost-coroutine1.83.0 arm64 1.83.0-3.2+b1 [235 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libboost-coroutine1.83-dev arm64 1.83.0-3.2+b1 [237 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libboost-coroutine-dev arm64 1.83.0.2+b2 [3860 B]
Get:140 http://deb.debian.org/debian sid/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B]
Get:141 http://deb.debian.org/debian sid/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B]
Get:142 http://deb.debian.org/debian sid/main arm64 libboost-exception1.83-dev arm64 1.83.0-3.2+b1 [230 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libboost-exception-dev arm64 1.83.0.2+b2 [3572 B]
Get:144 http://deb.debian.org/debian sid/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2+b1 [273 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2+b1 [293 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 libboost-fiber1.83.0 arm64 1.83.0-3.2+b1 [253 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 libboost-fiber1.83-dev arm64 1.83.0-3.2+b1 [265 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 libboost-fiber-dev arm64 1.83.0.2+b2 [4016 B]
Get:149 http://deb.debian.org/debian sid/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B]
Get:150 http://deb.debian.org/debian sid/main arm64 libboost-graph1.83.0 arm64 1.83.0-3.2+b1 [341 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2+b1 [314 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB]
Get:153 http://deb.debian.org/debian sid/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2+b1 [335 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 libboost-test1.83.0 arm64 1.83.0-3.2+b1 [438 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 libboost-test1.83-dev arm64 1.83.0-3.2+b1 [528 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 libboost-graph1.83-dev arm64 1.83.0-3.2+b1 [373 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 libboost-graph-dev arm64 1.83.0.2+b2 [3688 B]
Get:158 http://deb.debian.org/debian sid/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB]
Get:159 http://deb.debian.org/debian sid/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 librdmacm1t64 arm64 52.0-2+b1 [67.4 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 libfabric1 arm64 1.17.0-3.1 [480 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 libhwloc15 arm64 2.11.2-1 [141 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 libmunge2 arm64 0.5.15-4+b1 [19.4 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 libpciaccess0 arm64 0.17-3+b2 [51.2 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get:169 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 libxnvctrl0 arm64 535.171.04-1+b1 [14.1 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b2 [39.3 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 libhwloc-plugins arm64 2.11.2-1 [17.9 kB]
Get:174 http://deb.debian.org/debian sid/main arm64 libpmix2t64 arm64 5.0.4-1 [586 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 libibumad3 arm64 52.0-2+b1 [27.1 kB]
Get:176 http://deb.debian.org/debian sid/main arm64 libibmad5 arm64 52.0-2+b1 [41.5 kB]
Get:177 http://deb.debian.org/debian sid/main arm64 libucx0 arm64 1.17.0+ds-3 [959 kB]
Get:178 http://deb.debian.org/debian sid/main arm64 libopenmpi3t64 arm64 5.0.5-6 [1806 kB]
Get:179 http://deb.debian.org/debian sid/main arm64 libboost-mpi1.83.0 arm64 1.83.0-3.2+b1 [268 kB]
Get:180 http://deb.debian.org/debian sid/main arm64 libboost-graph-parallel1.83.0 arm64 1.83.0-3.2+b1 [276 kB]
Get:181 http://deb.debian.org/debian sid/main arm64 libboost-graph-parallel1.83-dev arm64 1.83.0-3.2+b1 [284 kB]
Get:182 http://deb.debian.org/debian sid/main arm64 libboost-graph-parallel-dev arm64 1.83.0.2+b2 [3716 B]
Get:183 http://deb.debian.org/debian sid/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-3.2+b1 [251 kB]
Get:184 http://deb.debian.org/debian sid/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2+b1 [261 kB]
Get:185 http://deb.debian.org/debian sid/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B]
Get:186 http://deb.debian.org/debian sid/main arm64 libboost-json1.83.0 arm64 1.83.0-3.2+b1 [348 kB]
Get:187 http://deb.debian.org/debian sid/main arm64 libboost-json1.83-dev arm64 1.83.0-3.2+b1 [372 kB]
Get:188 http://deb.debian.org/debian sid/main arm64 libboost-json-dev arm64 1.83.0.2+b2 [3696 B]
Get:189 http://deb.debian.org/debian sid/main arm64 libboost-locale1.83.0 arm64 1.83.0-3.2+b1 [441 kB]
Get:190 http://deb.debian.org/debian sid/main arm64 libboost-locale1.83-dev arm64 1.83.0-3.2+b1 [543 kB]
Get:191 http://deb.debian.org/debian sid/main arm64 libboost-locale-dev arm64 1.83.0.2+b2 [3916 B]
Get:192 http://deb.debian.org/debian sid/main arm64 libboost-log1.83.0 arm64 1.83.0-3.2+b1 [645 kB]
Get:193 http://deb.debian.org/debian sid/main arm64 libboost-log1.83-dev arm64 1.83.0-3.2+b1 [851 kB]
Get:194 http://deb.debian.org/debian sid/main arm64 libboost-log-dev arm64 1.83.0.2+b2 [3788 B]
Get:195 http://deb.debian.org/debian sid/main arm64 libboost-math1.83.0 arm64 1.83.0-3.2+b1 [471 kB]
Get:196 http://deb.debian.org/debian sid/main arm64 libboost-math1.83-dev arm64 1.83.0-3.2+b1 [535 kB]
Get:197 http://deb.debian.org/debian sid/main arm64 libboost-math-dev arm64 1.83.0.2+b2 [3784 B]
Get:198 http://deb.debian.org/debian sid/main arm64 openmpi-common all 5.0.5-6 [95.0 kB]
Get:199 http://deb.debian.org/debian sid/main arm64 libnl-3-dev arm64 3.7.0-0.3+b1 [101 kB]
Get:200 http://deb.debian.org/debian sid/main arm64 libnl-route-3-dev arm64 3.7.0-0.3+b1 [198 kB]
Get:201 http://deb.debian.org/debian sid/main arm64 libibverbs-dev arm64 52.0-2+b1 [625 kB]
Get:202 http://deb.debian.org/debian sid/main arm64 libnuma-dev arm64 2.0.18-1+b1 [37.8 kB]
Get:203 http://deb.debian.org/debian sid/main arm64 libltdl7 arm64 2.4.7-8 [392 kB]
Get:204 http://deb.debian.org/debian sid/main arm64 libltdl-dev arm64 2.4.7-8 [165 kB]
Get:205 http://deb.debian.org/debian sid/main arm64 libhwloc-dev arm64 2.11.2-1 [237 kB]
Get:206 http://deb.debian.org/debian sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get:207 http://deb.debian.org/debian sid/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10+b1 [102 kB]
Get:208 http://deb.debian.org/debian sid/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10+b1 [60.4 kB]
Get:209 http://deb.debian.org/debian sid/main arm64 libevent-dev arm64 2.1.12-stable-10+b1 [304 kB]
Get:210 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get:211 http://deb.debian.org/debian sid/main arm64 python3-defusedxml all 0.7.1-2 [43.3 kB]
Get:212 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:213 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:214 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
Get:215 http://deb.debian.org/debian sid/main arm64 libjson-perl all 4.10000-1 [87.5 kB]
Get:216 http://deb.debian.org/debian sid/main arm64 sphinx-common all 7.4.7-4 [731 kB]
Get:217 http://deb.debian.org/debian sid/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get:218 http://deb.debian.org/debian sid/main arm64 python-babel-localedata all 2.16.0-1 [5696 kB]
Get:219 http://deb.debian.org/debian sid/main arm64 python3-babel all 2.16.0-1 [114 kB]
Get:220 http://deb.debian.org/debian sid/main arm64 python3-roman all 4.2-1 [10.4 kB]
Get:221 http://deb.debian.org/debian sid/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get:222 http://deb.debian.org/debian sid/main arm64 python3-imagesize all 1.4.1-1 [6688 B]
Get:223 http://deb.debian.org/debian sid/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB]
Get:224 http://deb.debian.org/debian sid/main arm64 python3-jinja2 all 3.1.3-1 [119 kB]
Get:225 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.2-1 [55.3 kB]
Get:226 http://deb.debian.org/debian sid/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB]
Get:227 http://deb.debian.org/debian sid/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B]
Get:228 http://deb.debian.org/debian sid/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB]
Get:229 http://deb.debian.org/debian sid/main arm64 python3-idna all 3.8-2 [41.6 kB]
Get:230 http://deb.debian.org/debian sid/main arm64 python3-urllib3 all 2.0.7-2 [111 kB]
Get:231 http://deb.debian.org/debian sid/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get:232 http://deb.debian.org/debian sid/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get:233 http://deb.debian.org/debian sid/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get:234 http://deb.debian.org/debian sid/main arm64 python3-sphinx all 7.4.7-4 [588 kB]
Get:235 http://deb.debian.org/debian sid/main arm64 libpmix-dev arm64 5.0.4-1 [3942 kB]
Get:236 http://deb.debian.org/debian sid/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:237 http://deb.debian.org/debian sid/main arm64 openmpi-bin arm64 5.0.5-6 [180 kB]
Get:238 http://deb.debian.org/debian sid/main arm64 libopenmpi-dev arm64 5.0.5-6 [1087 kB]
Get:239 http://deb.debian.org/debian sid/main arm64 mpi-default-dev arm64 1.17 [3148 B]
Get:240 http://deb.debian.org/debian sid/main arm64 libboost-mpi1.83-dev arm64 1.83.0-3.2+b1 [291 kB]
Get:241 http://deb.debian.org/debian sid/main arm64 libboost-mpi-dev arm64 1.83.0.2+b2 [3668 B]
Get:242 http://deb.debian.org/debian sid/main arm64 libboost-python1.83.0 arm64 1.83.0-3.2+b1 [309 kB]
Get:243 http://deb.debian.org/debian sid/main arm64 mpi-default-bin arm64 1.17 [2372 B]
Get:244 http://deb.debian.org/debian sid/main arm64 libboost-mpi-python1.83.0 arm64 1.83.0-3.2+b1 [343 kB]
Get:245 http://deb.debian.org/debian sid/main arm64 libboost-mpi-python1.83-dev arm64 1.83.0-3.2+b1 [237 kB]
Get:246 http://deb.debian.org/debian sid/main arm64 libboost-mpi-python-dev arm64 1.83.0.2+b2 [3700 B]
Get:247 http://deb.debian.org/debian sid/main arm64 libboost-nowide1.83.0 arm64 1.83.0-3.2+b1 [234 kB]
Get:248 http://deb.debian.org/debian sid/main arm64 libboost-nowide1.83-dev arm64 1.83.0-3.2+b1 [236 kB]
Get:249 http://deb.debian.org/debian sid/main arm64 libboost-nowide-dev arm64 1.83.0.2+b2 [3660 B]
Get:250 http://deb.debian.org/debian sid/main arm64 libboost-numpy1.83.0 arm64 1.83.0-3.2+b1 [241 kB]
Get:251 http://deb.debian.org/debian sid/main arm64 libboost-numpy1.83-dev arm64 1.83.0-3.2+b1 [246 kB]
Get:252 http://deb.debian.org/debian sid/main arm64 libboost-numpy-dev arm64 1.83.0.2+b2 [3632 B]
Get:253 http://deb.debian.org/debian sid/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2+b1 [331 kB]
Get:254 http://deb.debian.org/debian sid/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2+b1 [369 kB]
Get:255 http://deb.debian.org/debian sid/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B]
Get:256 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB]
Get:257 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB]
Get:258 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB]
Get:259 http://deb.debian.org/debian sid/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B]
Get:260 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB]
Get:261 http://deb.debian.org/debian sid/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB]
Get:262 http://deb.debian.org/debian sid/main arm64 libboost-python1.83-dev arm64 1.83.0-3.2+b1 [322 kB]
Get:263 http://deb.debian.org/debian sid/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B]
Get:264 http://deb.debian.org/debian sid/main arm64 libboost-random1.83.0 arm64 1.83.0-3.2+b1 [238 kB]
Get:265 http://deb.debian.org/debian sid/main arm64 libboost-random1.83-dev arm64 1.83.0-3.2+b1 [241 kB]
Get:266 http://deb.debian.org/debian sid/main arm64 libboost-random-dev arm64 1.83.0.2+b2 [3584 B]
Get:267 http://deb.debian.org/debian sid/main arm64 libboost-regex-dev arm64 1.83.0.2+b2 [3852 B]
Get:268 http://deb.debian.org/debian sid/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B]
Get:269 http://deb.debian.org/debian sid/main arm64 libboost-stacktrace1.83.0 arm64 1.83.0-3.2+b1 [277 kB]
Get:270 http://deb.debian.org/debian sid/main arm64 libboost-stacktrace1.83-dev arm64 1.83.0-3.2+b1 [245 kB]
Get:271 http://deb.debian.org/debian sid/main arm64 libboost-stacktrace-dev arm64 1.83.0.2+b2 [3580 B]
Get:272 http://deb.debian.org/debian sid/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B]
Get:273 http://deb.debian.org/debian sid/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B]
Get:274 http://deb.debian.org/debian sid/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B]
Get:275 http://deb.debian.org/debian sid/main arm64 libboost-timer1.83.0 arm64 1.83.0-3.2+b1 [235 kB]
Get:276 http://deb.debian.org/debian sid/main arm64 libboost-timer1.83-dev arm64 1.83.0-3.2+b1 [236 kB]
Get:277 http://deb.debian.org/debian sid/main arm64 libboost-timer-dev arm64 1.83.0.2+b2 [3712 B]
Get:278 http://deb.debian.org/debian sid/main arm64 libboost1.83-tools-dev arm64 1.83.0-3.2+b1 [1408 kB]
Get:279 http://deb.debian.org/debian sid/main arm64 libboost-tools-dev arm64 1.83.0.2+b2 [3764 B]
Get:280 http://deb.debian.org/debian sid/main arm64 libboost-type-erasure1.83.0 arm64 1.83.0-3.2+b1 [245 kB]
Get:281 http://deb.debian.org/debian sid/main arm64 libboost-type-erasure1.83-dev arm64 1.83.0-3.2+b1 [250 kB]
Get:282 http://deb.debian.org/debian sid/main arm64 libboost-type-erasure-dev arm64 1.83.0.2+b2 [3676 B]
Get:283 http://deb.debian.org/debian sid/main arm64 libboost-url1.83.0 arm64 1.83.0-3.2+b1 [328 kB]
Get:284 http://deb.debian.org/debian sid/main arm64 libboost-url1.83-dev arm64 1.83.0-3.2+b1 [423 kB]
Get:285 http://deb.debian.org/debian sid/main arm64 libboost-url-dev arm64 1.83.0.2+b2 [3720 B]
Get:286 http://deb.debian.org/debian sid/main arm64 libboost-wave1.83.0 arm64 1.83.0-3.2+b1 [416 kB]
Get:287 http://deb.debian.org/debian sid/main arm64 libboost-wave1.83-dev arm64 1.83.0-3.2+b1 [492 kB]
Get:288 http://deb.debian.org/debian sid/main arm64 libboost-wave-dev arm64 1.83.0.2+b2 [3616 B]
Get:289 http://deb.debian.org/debian sid/main arm64 libboost-all-dev arm64 1.83.0.2+b2 [3924 B]
Get:290 http://deb.debian.org/debian sid/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB]
Get:291 http://deb.debian.org/debian sid/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB]
Get:292 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB]
Get:293 http://deb.debian.org/debian sid/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB]
Get:294 http://deb.debian.org/debian sid/main arm64 liblmdb0 arm64 0.9.31-1+b2 [43.5 kB]
Get:295 http://deb.debian.org/debian sid/main arm64 libmbedcrypto16 arm64 3.6.2-3 [341 kB]
Get:296 http://deb.debian.org/debian sid/main arm64 libmbedx509-7 arm64 3.6.2-3 [146 kB]
Get:297 http://deb.debian.org/debian sid/main arm64 libmbedtls21 arm64 3.6.2-3 [222 kB]
Get:298 http://deb.debian.org/debian sid/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB]
Get:299 http://deb.debian.org/debian sid/main arm64 libpng-dev arm64 1.6.44-2 [360 kB]
Get:300 http://deb.debian.org/debian sid/main arm64 libspoa7.0.0 arm64 4.1.4-2+b1 [53.3 kB]
Get:301 http://deb.debian.org/debian sid/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B]
Get:302 http://deb.debian.org/debian sid/main arm64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB]
Get:303 http://deb.debian.org/debian sid/main arm64 ncbi-blast+ arm64 2.16.0+ds-6+b1 [13.8 MB]
Get:304 http://deb.debian.org/debian sid/main arm64 patchelf arm64 0.18.0-1.1+b1 [88.9 kB]
Get:305 http://deb.debian.org/debian sid/main arm64 pybind11-dev all 2.13.6-1 [204 kB]
Get:306 http://deb.debian.org/debian sid/main arm64 python3-pybind11 all 2.13.6-1 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 245 MB in 5s (45.8 MB/s)
Selecting previously unselected package libpython3.12-minimal:arm64.
(Reading database ... 17119 files and directories currently installed.)
Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ...
Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.6.4-1) ...
Selecting previously unselected package python3.12-minimal.
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Unpacking python3.12-minimal (3.12.7-3) ...
Setting up libpython3.12-minimal:arm64 (3.12.7-3) ...
Setting up libexpat1:arm64 (2.6.4-1) ...
Setting up python3.12-minimal (3.12.7-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 17439 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.12.7-1_arm64.deb ...
Unpacking python3-minimal (3.12.7-1) ...
Selecting previously unselected package media-types.
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Unpacking media-types (10.1.0) ...
Selecting previously unselected package libncursesw6:arm64.
Preparing to unpack .../2-libncursesw6_6.5-2+b1_arm64.deb ...
Unpacking libncursesw6:arm64 (6.5-2+b1) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../3-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:arm64.
Preparing to unpack .../4-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libnsl2:arm64.
Preparing to unpack .../5-libnsl2_1.3.0-3+b3_arm64.deb ...
Unpacking libnsl2:arm64 (1.3.0-3+b3) ...
Selecting previously unselected package libpython3.12-stdlib:arm64.
Preparing to unpack .../6-libpython3.12-stdlib_3.12.7-3_arm64.deb ...
Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ...
Selecting previously unselected package python3.12.
Preparing to unpack .../7-python3.12_3.12.7-3_arm64.deb ...
Unpacking python3.12 (3.12.7-3) ...
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Preparing to unpack .../8-libpython3-stdlib_3.12.7-1_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.12.7-1) ...
Setting up python3-minimal (3.12.7-1) ...
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Setting up libboost-python-dev (1.83.0.2+b2) ...
Setting up python3-pygments (2.18.0+dfsg-1) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up libopenmpi3t64:arm64 (5.0.5-6) ...
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Setting up openmpi-bin (5.0.5-6) ...
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update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
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Setting up dh-python (6.20241024) ...
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Setting up mpi-default-dev (1.17) ...
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Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any-amd64 arm64 all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.9-1
Package versions: adduser_3.137 appstream_1.0.3-1+b1 apt_2.9.14 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 chrpath_0.18-1 cmake_3.31.1-1 cmake-data_3.31.1-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-exec_0.30+b1 dh-python_6.20241024 dh-strip-nondeterminism_1.14.0-1 diffstat_1.67-1 diffutils_1:3.10-1+b1 docutils-common_0.21.2+dfsg-2 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: shasta
Binary: shasta, python3-shasta, python3-shasta-doc
Architecture: any-amd64 arm64 all
Version: 0.12.0-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shayan Doust <hello@shayandoust.me>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/chanzuckerberg/shasta
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/shasta
Vcs-Git: https://salsa.debian.org/med-team/shasta.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, cmake, patchelf, chrpath, libboost-all-dev, libpng-dev, ncbi-blast+, python3-dev:native, python3-sphinx, libpython3-dev, libseqan2-dev, libspoa-dev, python3-pybind11, libcpu-features-dev [any-amd64], libcereal-dev, libblas-dev, liblapack-dev, gfortran
Package-List:
 python3-shasta deb python optional arch=any-amd64,arm64
 python3-shasta-doc deb doc optional arch=all
 shasta deb science optional arch=any-amd64,arm64
Checksums-Sha1:
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 211503e8daf13ec3a1e1f5e1a56d4e9f03355247 10120 shasta_0.12.0-1.debian.tar.xz
Checksums-Sha256:
 39a7fcc49df93d903d8a1ed21a57a7533fc44897cb58194bfd089356f36cfdc9 9602137 shasta_0.12.0.orig.tar.gz
 2ed0b0cd1b6ac9960b92a3b26e7ab1be5e58c13fe65c4fdb20a75caeb2d07333 10120 shasta_0.12.0-1.debian.tar.xz
Files:
 6f61f2536ecadcb827b822af5d22f8a6 9602137 shasta_0.12.0.orig.tar.gz
 52c1981c540bf79fc17ca6b60885c04c 10120 shasta_0.12.0-1.debian.tar.xz
Dgit: 77c67b611fa7811c48fd7ca1fafff3a53b31a816 debian archive/debian/0.12.0-1 https://git.dgit.debian.org/shasta

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gpgv: Signature made Sun May 26 16:21:26 2024 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./shasta_0.12.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting shasta in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking shasta_0.12.0.orig.tar.gz
dpkg-source: info: unpacking shasta_0.12.0-1.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package shasta
dpkg-buildpackage: info: source version 0.12.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --with python3,sphinxdoc
   dh_clean
 debian/rules binary
dh binary --with python3,sphinxdoc
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBUILD_ID=0.12.0 \
			-DBUILD_STATIC_EXECUTABLE=OFF \
			-DBUILD_DYNAMIC_EXECUTABLE=ON
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_ID=0.12.0 -DBUILD_STATIC_EXECUTABLE=OFF -DBUILD_DYNAMIC_EXECUTABLE=ON ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Processor architecture is aarch64
-- CMAKE_SYSTEM_NAME is Linux
-- BUILD_STATIC_LIBRARY is ON
-- BUILD_STATIC_EXECUTABLE is OFF
-- BUILD_DYNAMIC_LIBRARY is ON
-- BUILD_DYNAMIC_EXECUTABLE is ON
-- BUILD_NATIVE is OFF
-- BUILD_DEBUG is OFF
-- BUILD_ID is: 0.12.0
-- Configuring done (1.1s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_FIND_USE_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
	cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make staticLibrary/CMakeFiles/shastaStaticLibrary.dir/depend
make  -f dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/staticLibrary /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary/CMakeFiles/shastaStaticLibrary.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/dynamicLibrary /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/dynamicLibrary /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
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[  0%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Align4.cpp.o
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[  2%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Alignment.cpp.o
[  2%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Align4.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/Align4.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/Align4.cpp.o -c /<<PKGBUILDDIR>>/src/Align4.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -DSHASTA_PYTHON_API -I/<<PKGBUILDDIR>>/dynamicLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/pybind11/include  -MD -MT dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o -MF CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o.d -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o -c /<<PKGBUILDDIR>>/src/Align4.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o -c /<<PKGBUILDDIR>>/src/AlignmentGraph.cpp
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Alignment.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/Alignment.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/Alignment.cpp.o -c /<<PKGBUILDDIR>>/src/Alignment.cpp
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cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o -c /<<PKGBUILDDIR>>/src/AssembledSegment.cpp
[  3%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/Assembler.cpp.o -c /<<PKGBUILDDIR>>/src/Assembler.cpp
[  4%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign.cpp.o -c /<<PKGBUILDDIR>>/src/AssemblerAlign.cpp
/<<PKGBUILDDIR>>/src/Align4.cpp: In member function ‘bool shasta::Align4::Aligner::computeBandedAlignment(const std::array<std::span<long unsigned int>, 2>&, int32_t, int32_t, shasta::Alignment&, shasta::AlignmentInfo&, bool) const’:
/<<PKGBUILDDIR>>/src/Align4.cpp:1002:21: error: ‘seqan’ is not a namespace-name
 1002 |     using namespace seqan;
      |                     ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1003:23: error: ‘String’ does not name a type
 1003 |     using TSequence = String<KmerId>;
      |                       ^~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1004:34: error: ‘TSequence’ was not declared in this scope
 1004 |     using TStringSet = StringSet<TSequence>;
      |                                  ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1004:24: error: ‘StringSet’ does not name a type
 1004 |     using TStringSet = StringSet<TSequence>;
      |                        ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1005:49: error: ‘Dependent’ was not declared in this scope; did you mean ‘seqan2::Dependent’?
 1005 |     using TDepStringSet = StringSet< TSequence, Dependent<> >;
      |                                                 ^~~~~~~~~
      |                                                 seqan2::Dependent
In file included from /usr/include/seqan/sequence.h:137,
                 from /usr/include/seqan/modifier.h:47,
                 from /usr/include/seqan/align.h:57,
                 from /<<PKGBUILDDIR>>/src/Align4.cpp:15:
/usr/include/seqan/sequence/string_set_dependent_tight.h:137:8: note: ‘seqan2::Dependent’ declared here
  137 | struct Dependent;
      |        ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1005:27: error: ‘StringSet’ does not name a type
 1005 |     using TDepStringSet = StringSet< TSequence, Dependent<> >;
      |                           ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1006:32: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
 1006 |     using TAlignGraph = Graph< seqan::Alignment<TDepStringSet> >;
      |                                ^~~~~
      |                                seqan2
/<<PKGBUILDDIR>>/src/Align4.cpp:1006:25: error: ‘Graph’ does not name a type
 1006 |     using TAlignGraph = Graph< seqan::Alignment<TDepStringSet> >;
      |                         ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1018:34: error: invalid types ‘int[uint64_t {aka long unsigned int}]’ for array subscript
 1018 |             appendValue(sequences[i], kmerId + 100);
      |                                  ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1018:13: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
 1018 |             appendValue(sequences[i], kmerId + 100);
      |             ^~~~~~~~~~~
      |             seqan2::appendValue
In file included from /usr/include/seqan/file.h:92,
                 from /usr/include/seqan/stream.h:62,
                 from /usr/include/seqan/score.h:43,
                 from /usr/include/seqan/graph_align.h:45,
                 from /usr/include/seqan/align.h:59:
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1022:5: error: ‘TStringSet’ was not declared in this scope
 1022 |     TStringSet sequencesSet;
      |     ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1023:17: error: ‘sequencesSet’ was not declared in this scope; did you mean ‘sequences’?
 1023 |     appendValue(sequencesSet, sequences[0]);
      |                 ^~~~~~~~~~~~
      |                 sequences
/<<PKGBUILDDIR>>/src/Align4.cpp:1023:40: error: invalid types ‘int[int]’ for array subscript
 1023 |     appendValue(sequencesSet, sequences[0]);
      |                                        ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1023:5: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
 1023 |     appendValue(sequencesSet, sequences[0]);
      |     ^~~~~~~~~~~
      |     seqan2::appendValue
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1024:40: error: invalid types ‘int[int]’ for array subscript
 1024 |     appendValue(sequencesSet, sequences[1]);
      |                                        ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1027:5: error: ‘TAlignGraph’ was not declared in this scope
 1027 |     TAlignGraph graph(sequencesSet);
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1029:9: error: ‘graph’ was not declared in this scope; did you mean ‘boost::graph’?
 1029 |         graph,
      |         ^~~~~
      |         boost::graph
In file included from /usr/include/boost/graph/properties.hpp:23,
                 from /usr/include/boost/pending/disjoint_sets.hpp:15,
                 from /<<PKGBUILDDIR>>/src/Align4.cpp:18:
/usr/include/boost/graph/graph_traits.hpp:336:11: note: ‘boost::graph’ declared here
  336 | namespace graph
      |           ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1030:20: error: ‘Simple’ was not declared in this scope; did you mean ‘seqan2::Simple’?
 1030 |         Score<int, Simple>(matchScore, mismatchScore, gapScore),
      |                    ^~~~~~
      |                    seqan2::Simple
In file included from /usr/include/seqan/basic/basic_smart_pointer.h:53,
                 from /usr/include/seqan/basic/basic_allocator.h:46,
                 from /usr/include/seqan/basic.h:74,
                 from /usr/include/seqan/align.h:55:
/usr/include/seqan/basic/holder_base.h:106:22: note: ‘seqan2::Simple’ declared here
  106 | typedef Tag<Simple_> Simple;
      |                      ^~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1030:9: error: ‘Score’ was not declared in this scope; did you mean ‘seqan2::Score’?
 1030 |         Score<int, Simple>(matchScore, mismatchScore, gapScore),
      |         ^~~~~~~~~~~~~~~~~~
      |         seqan2::Score
In file included from /usr/include/seqan/score.h:45:
/usr/include/seqan/score/score_base.h:68:7: note: ‘seqan2::Score’ declared here
   68 | class Score;
      |       ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1031:9: error: ‘AlignConfig’ was not declared in this scope; did you mean ‘seqan2::AlignConfig’?
 1031 |         AlignConfig<true, true, true, true>(),
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         seqan2::AlignConfig
In file included from /usr/include/seqan/align.h:70:
/usr/include/seqan/align/align_config.h:93:7: note: ‘seqan2::AlignConfig’ declared here
   93 | class AlignConfig
      |       ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1033:9: error: ‘LinearGaps’ was not declared in this scope; did you mean ‘seqan2::LinearGaps’?
 1033 |         LinearGaps());
      |         ^~~~~~~~~~
      |         seqan2::LinearGaps
In file included from /usr/include/seqan/align.h:111:
/usr/include/seqan/align/dp_profile.h:300:26: note: ‘seqan2::LinearGaps’ declared here
  300 | typedef Tag<LinearGaps_> LinearGaps;
      |                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1028:23: error: ‘globalAlignment’ was not declared in this scope; did you mean ‘seqan2::globalAlignment’?
 1028 |     const int score = globalAlignment(
      |                       ^~~~~~~~~~~~~~~
      |                       seqan2::globalAlignment
In file included from /usr/include/seqan/align.h:218:
/usr/include/seqan/align/global_alignment_specialized.h:121:5: note: ‘seqan2::globalAlignment’ declared here
  121 | int globalAlignment(Gaps<TSequenceH, TGapsSpecH> & gapsH,
      |     ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1034:17: error: ‘seqan’ is not a class, namespace, or enumeration
 1034 |     if(score == seqan::MinValue<int>::VALUE) {
      |                 ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1034:33: error: expected primary-expression before ‘int’
 1034 |     if(score == seqan::MinValue<int>::VALUE) {
      |                                 ^~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1034:33: error: expected ‘)’ before ‘int’
 1034 |     if(score == seqan::MinValue<int>::VALUE) {
      |       ~                         ^~~
      |                                 )
/<<PKGBUILDDIR>>/src/Align4.cpp:1041:14: error: expected ‘;’ before ‘align’
 1041 |     TSequence align;
      |              ^~~~~~
      |              ;
/<<PKGBUILDDIR>>/src/Align4.cpp:1042:5: error: ‘convertAlignment’ was not declared in this scope; did you mean ‘seqan2::convertAlignment’?
 1042 |     convertAlignment(graph, align);
      |     ^~~~~~~~~~~~~~~~
      |     seqan2::convertAlignment
In file included from /usr/include/seqan/graph_align.h:52:
/usr/include/seqan/graph_align/graph_impl_align.h:1666:1: note: ‘seqan2::convertAlignment’ declared here
 1666 | convertAlignment(String<TValue, TSpec1> const& mat,
      | ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1043:38: error: expected primary-expression before ‘int’
 1043 |     const int totalAlignmentLength = int(seqan::length(align));
      |                                      ^~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1057:20: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1057 |         if( align[i] != seqanGapValue and
      |                    ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1057:22: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1057 |         if( align[i] != seqanGapValue and
      |             ~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1058:38: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1058 |             align[i + alignmentLength] != seqanGapValue and
      |                                      ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1058:40: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1058 |             align[i + alignmentLength] != seqanGapValue and
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1062:19: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1062 |         if(align[i] != seqanGapValue) {
      |                   ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1062:21: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1062 |         if(align[i] != seqanGapValue) {
      |            ~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1065:37: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1065 |         if(align[i + alignmentLength] != seqanGapValue) {
      |                                     ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1065:39: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1065 |         if(align[i + alignmentLength] != seqanGapValue) {
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp: In member function ‘bool shasta::Align4::Aligner::computeBandedAlignment(const std::array<std::span<long unsigned int>, 2>&, int32_t, int32_t, shasta::Alignment&, shasta::AlignmentInfo&, bool) const’:
/<<PKGBUILDDIR>>/src/Align4.cpp:1002:21: error: ‘seqan’ is not a namespace-name
 1002 |     using namespace seqan;
      |                     ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1003:23: error: ‘String’ does not name a type
 1003 |     using TSequence = String<KmerId>;
      |                       ^~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1004:34: error: ‘TSequence’ was not declared in this scope
 1004 |     using TStringSet = StringSet<TSequence>;
      |                                  ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1004:24: error: ‘StringSet’ does not name a type
 1004 |     using TStringSet = StringSet<TSequence>;
      |                        ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1005:49: error: ‘Dependent’ was not declared in this scope; did you mean ‘seqan2::Dependent’?
 1005 |     using TDepStringSet = StringSet< TSequence, Dependent<> >;
      |                                                 ^~~~~~~~~
      |                                                 seqan2::Dependent
In file included from /usr/include/seqan/sequence.h:137,
                 from /usr/include/seqan/modifier.h:47,
                 from /usr/include/seqan/align.h:57,
                 from /<<PKGBUILDDIR>>/src/Align4.cpp:15:
/usr/include/seqan/sequence/string_set_dependent_tight.h:137:8: note: ‘seqan2::Dependent’ declared here
  137 | struct Dependent;
      |        ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1005:27: error: ‘StringSet’ does not name a type
 1005 |     using TDepStringSet = StringSet< TSequence, Dependent<> >;
      |                           ^~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1006:32: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
 1006 |     using TAlignGraph = Graph< seqan::Alignment<TDepStringSet> >;
      |                                ^~~~~
      |                                seqan2
/<<PKGBUILDDIR>>/src/Align4.cpp:1006:25: error: ‘Graph’ does not name a type
 1006 |     using TAlignGraph = Graph< seqan::Alignment<TDepStringSet> >;
      |                         ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1018:34: error: invalid types ‘int[uint64_t {aka long unsigned int}]’ for array subscript
 1018 |             appendValue(sequences[i], kmerId + 100);
      |                                  ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1018:13: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
 1018 |             appendValue(sequences[i], kmerId + 100);
      |             ^~~~~~~~~~~
      |             seqan2::appendValue
In file included from /usr/include/seqan/file.h:92,
                 from /usr/include/seqan/stream.h:62,
                 from /usr/include/seqan/score.h:43,
                 from /usr/include/seqan/graph_align.h:45,
                 from /usr/include/seqan/align.h:59:
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1022:5: error: ‘TStringSet’ was not declared in this scope
 1022 |     TStringSet sequencesSet;
      |     ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1023:17: error: ‘sequencesSet’ was not declared in this scope; did you mean ‘sequences’?
 1023 |     appendValue(sequencesSet, sequences[0]);
      |                 ^~~~~~~~~~~~
      |                 sequences
/<<PKGBUILDDIR>>/src/Align4.cpp:1023:40: error: invalid types ‘int[int]’ for array subscript
 1023 |     appendValue(sequencesSet, sequences[0]);
      |                                        ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1023:5: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
 1023 |     appendValue(sequencesSet, sequences[0]);
      |     ^~~~~~~~~~~
      |     seqan2::appendValue
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1024:40: error: invalid types ‘int[int]’ for array subscript
 1024 |     appendValue(sequencesSet, sequences[1]);
      |                                        ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1027:5: error: ‘TAlignGraph’ was not declared in this scope
 1027 |     TAlignGraph graph(sequencesSet);
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1029:9: error: ‘graph’ was not declared in this scope; did you mean ‘boost::graph’?
 1029 |         graph,
      |         ^~~~~
      |         boost::graph
In file included from /usr/include/boost/graph/properties.hpp:23,
                 from /usr/include/boost/pending/disjoint_sets.hpp:15,
                 from /<<PKGBUILDDIR>>/src/Align4.cpp:18:
/usr/include/boost/graph/graph_traits.hpp:336:11: note: ‘boost::graph’ declared here
  336 | namespace graph
      |           ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1030:20: error: ‘Simple’ was not declared in this scope; did you mean ‘seqan2::Simple’?
 1030 |         Score<int, Simple>(matchScore, mismatchScore, gapScore),
      |                    ^~~~~~
      |                    seqan2::Simple
In file included from /usr/include/seqan/basic/basic_smart_pointer.h:53,
                 from /usr/include/seqan/basic/basic_allocator.h:46,
                 from /usr/include/seqan/basic.h:74,
                 from /usr/include/seqan/align.h:55:
/usr/include/seqan/basic/holder_base.h:106:22: note: ‘seqan2::Simple’ declared here
  106 | typedef Tag<Simple_> Simple;
      |                      ^~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1030:9: error: ‘Score’ was not declared in this scope; did you mean ‘seqan2::Score’?
 1030 |         Score<int, Simple>(matchScore, mismatchScore, gapScore),
      |         ^~~~~~~~~~~~~~~~~~
      |         seqan2::Score
In file included from /usr/include/seqan/score.h:45:
/usr/include/seqan/score/score_base.h:68:7: note: ‘seqan2::Score’ declared here
   68 | class Score;
      |       ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1031:9: error: ‘AlignConfig’ was not declared in this scope; did you mean ‘seqan2::AlignConfig’?
 1031 |         AlignConfig<true, true, true, true>(),
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         seqan2::AlignConfig
In file included from /usr/include/seqan/align.h:70:
/usr/include/seqan/align/align_config.h:93:7: note: ‘seqan2::AlignConfig’ declared here
   93 | class AlignConfig
      |       ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1033:9: error: ‘LinearGaps’ was not declared in this scope; did you mean ‘seqan2::LinearGaps’?
 1033 |         LinearGaps());
      |         ^~~~~~~~~~
      |         seqan2::LinearGaps
In file included from /usr/include/seqan/align.h:111:
/usr/include/seqan/align/dp_profile.h:300:26: note: ‘seqan2::LinearGaps’ declared here
  300 | typedef Tag<LinearGaps_> LinearGaps;
      |                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1028:23: error: ‘globalAlignment’ was not declared in this scope; did you mean ‘seqan2::globalAlignment’?
 1028 |     const int score = globalAlignment(
      |                       ^~~~~~~~~~~~~~~
      |                       seqan2::globalAlignment
In file included from /usr/include/seqan/align.h:218:
/usr/include/seqan/align/global_alignment_specialized.h:121:5: note: ‘seqan2::globalAlignment’ declared here
  121 | int globalAlignment(Gaps<TSequenceH, TGapsSpecH> & gapsH,
      |     ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1034:17: error: ‘seqan’ is not a class, namespace, or enumeration
 1034 |     if(score == seqan::MinValue<int>::VALUE) {
      |                 ^~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1034:33: error: expected primary-expression before ‘int’
 1034 |     if(score == seqan::MinValue<int>::VALUE) {
      |                                 ^~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1034:33: error: expected ‘)’ before ‘int’
 1034 |     if(score == seqan::MinValue<int>::VALUE) {
      |       ~                         ^~~
      |                                 )
/<<PKGBUILDDIR>>/src/Align4.cpp:1041:14: error: expected ‘;’ before ‘align’
 1041 |     TSequence align;
      |              ^~~~~~
      |              ;
/<<PKGBUILDDIR>>/src/Align4.cpp:1042:5: error: ‘convertAlignment’ was not declared in this scope; did you mean ‘seqan2::convertAlignment’?
 1042 |     convertAlignment(graph, align);
      |     ^~~~~~~~~~~~~~~~
      |     seqan2::convertAlignment
In file included from /usr/include/seqan/graph_align.h:52:
/usr/include/seqan/graph_align/graph_impl_align.h:1666:1: note: ‘seqan2::convertAlignment’ declared here
 1666 | convertAlignment(String<TValue, TSpec1> const& mat,
      | ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1043:38: error: expected primary-expression before ‘int’
 1043 |     const int totalAlignmentLength = int(seqan::length(align));
      |                                      ^~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1057:20: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1057 |         if( align[i] != seqanGapValue and
      |                    ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1057:22: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1057 |         if( align[i] != seqanGapValue and
      |             ~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1058:38: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1058 |             align[i + alignmentLength] != seqanGapValue and
      |                                      ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1058:40: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1058 |             align[i + alignmentLength] != seqanGapValue and
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1062:19: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1062 |         if(align[i] != seqanGapValue) {
      |                   ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1062:21: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1062 |         if(align[i] != seqanGapValue) {
      |            ~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Align4.cpp:1065:37: warning: pointer to a function used in arithmetic [-Wpointer-arith]
 1065 |         if(align[i + alignmentLength] != seqanGapValue) {
      |                                     ^
/<<PKGBUILDDIR>>/src/Align4.cpp:1065:39: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
 1065 |         if(align[i + alignmentLength] != seqanGapValue) {
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
make[4]: *** [dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make:82: dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:186: dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/all] Error 2
make[3]: *** Waiting for unfinished jobs....
[  4%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ALLOW_DEPRECATED_HEADERS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.12.0 -DNDEBUG -I/<<PKGBUILDDIR>>/staticLibrary/../src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++20 -Wall -Wconversion -Wno-unused-result -Wno-trigraphs -Wno-psabi -g0 -O3 -MD -MT staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o -MF CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o.d -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o -c /<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp
make[4]: *** [staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make:82: staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Align4.cpp.o] Error 1
make[4]: *** Waiting for unfinished jobs....
/<<PKGBUILDDIR>>/src/AssemblerAlign.cpp: In member function ‘bool shasta::Assembler::suppressAlignment(shasta::ReadId, shasta::ReadId, uint64_t)’:
/<<PKGBUILDDIR>>/src/AssemblerAlign.cpp:1121:19: warning: conversion from ‘long int’ to ‘int’ may change value [-Wconversion]
 1121 |     return abs(r0 - r1) < int64_t(delta);
      |                ~~~^~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp: In member function ‘void shasta::Assembler::alignOrientedReads1(shasta::OrientedReadId, shasta::OrientedReadId, int, int, int, shasta::Alignment&, shasta::AlignmentInfo&)’:
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:60:21: error: ‘seqan’ is not a namespace-name
   60 |     using namespace seqan;
      |                     ^~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:63:11: error: ‘seqan’ has not been declared
   63 |     using seqan::Alignment;
      |           ^~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:68:23: error: ‘String’ does not name a type
   68 |     using TSequence = String<KmerId>;
      |                       ^~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:71:34: error: ‘TSequence’ was not declared in this scope
   71 |     using TStringSet = StringSet<TSequence>;
      |                                  ^~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:71:24: error: ‘StringSet’ does not name a type
   71 |     using TStringSet = StringSet<TSequence>;
      |                        ^~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:72:48: error: ‘Dependent’ was not declared in this scope; did you mean ‘seqan2::Dependent’?
   72 |     using TDepStringSet = StringSet<TSequence, Dependent<> >;
      |                                                ^~~~~~~~~
      |                                                seqan2::Dependent
In file included from /usr/include/seqan/sequence.h:137,
                 from /usr/include/seqan/modifier.h:47,
                 from /usr/include/seqan/align.h:57,
                 from /<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:9:
/usr/include/seqan/sequence/string_set_dependent_tight.h:137:8: note: ‘seqan2::Dependent’ declared here
  137 | struct Dependent;
      |        ^~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:72:27: error: ‘StringSet’ does not name a type
   72 |     using TDepStringSet = StringSet<TSequence, Dependent<> >;
      |                           ^~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:73:31: error: ‘shasta::Alignment’ is not a template
   73 |     using TAlignGraph = Graph<Alignment<TDepStringSet> >;
      |                               ^~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:73:41: error: ‘TDepStringSet’ was not declared in this scope
   73 |     using TAlignGraph = Graph<Alignment<TDepStringSet> >;
      |                                         ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:73:25: error: ‘Graph’ does not name a type
   73 |     using TAlignGraph = Graph<Alignment<TDepStringSet> >;
      |                         ^~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:103:14: error: expected ‘;’ before ‘seq0’
  103 |     TSequence seq0;
      |              ^~~~~
      |              ;
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:105:21: error: ‘seq0’ was not declared in this scope
  105 |         appendValue(seq0, kmerId + 100);
      |                     ^~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:105:9: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
  105 |         appendValue(seq0, kmerId + 100);
      |         ^~~~~~~~~~~
      |         seqan2::appendValue
In file included from /usr/include/seqan/file.h:92,
                 from /usr/include/seqan/stream.h:62,
                 from /usr/include/seqan/score.h:43,
                 from /usr/include/seqan/graph_align.h:45,
                 from /usr/include/seqan/align.h:59:
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:107:14: error: expected ‘;’ before ‘seq1’
  107 |     TSequence seq1;
      |              ^~~~~
      |              ;
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:109:21: error: ‘seq1’ was not declared in this scope
  109 |         appendValue(seq1, kmerId + 100);
      |                     ^~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:109:9: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
  109 |         appendValue(seq1, kmerId + 100);
      |         ^~~~~~~~~~~
      |         seqan2::appendValue
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:113:5: error: ‘TStringSet’ was not declared in this scope
  113 |     TStringSet sequences;
      |     ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:114:17: error: ‘sequences’ was not declared in this scope
  114 |     appendValue(sequences, seq0);
      |                 ^~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:114:28: error: ‘seq0’ was not declared in this scope
  114 |     appendValue(sequences, seq0);
      |                            ^~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:114:5: error: ‘appendValue’ was not declared in this scope; did you mean ‘seqan2::appendValue’?
  114 |     appendValue(sequences, seq0);
      |     ^~~~~~~~~~~
      |     seqan2::appendValue
/usr/include/seqan/file/string_external.h:2069:5: note: ‘seqan2::appendValue’ declared here
 2069 |     appendValue(String<TTargetValue, External<TConfig> > &me,
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:115:28: error: ‘seq1’ was not declared in this scope
  115 |     appendValue(sequences, seq1);
      |                            ^~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:118:5: error: ‘TAlignGraph’ was not declared in this scope
  118 |     TAlignGraph graph(sequences);
      |     ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:121:9: error: ‘graph’ was not declared in this scope; did you mean ‘isgraph’?
  121 |         graph,
      |         ^~~~~
      |         isgraph
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:122:20: error: ‘Simple’ was not declared in this scope; did you mean ‘seqan2::Simple’?
  122 |         Score<int, Simple>(matchScore, mismatchScore, gapScore),
      |                    ^~~~~~
      |                    seqan2::Simple
In file included from /usr/include/seqan/basic/basic_smart_pointer.h:53,
                 from /usr/include/seqan/basic/basic_allocator.h:46,
                 from /usr/include/seqan/basic.h:74,
                 from /usr/include/seqan/align.h:55:
/usr/include/seqan/basic/holder_base.h:106:22: note: ‘seqan2::Simple’ declared here
  106 | typedef Tag<Simple_> Simple;
      |                      ^~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:122:9: error: ‘Score’ was not declared in this scope; did you mean ‘seqan2::Score’?
  122 |         Score<int, Simple>(matchScore, mismatchScore, gapScore),
      |         ^~~~~~~~~~~~~~~~~~
      |         seqan2::Score
In file included from /usr/include/seqan/score.h:45:
/usr/include/seqan/score/score_base.h:68:7: note: ‘seqan2::Score’ declared here
   68 | class Score;
      |       ^~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:123:9: error: ‘AlignConfig’ was not declared in this scope; did you mean ‘seqan2::AlignConfig’?
  123 |         AlignConfig<true, true, true, true>(),
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         seqan2::AlignConfig
In file included from /usr/include/seqan/align.h:70:
/usr/include/seqan/align/align_config.h:93:7: note: ‘seqan2::AlignConfig’ declared here
   93 | class AlignConfig
      |       ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:124:9: error: ‘LinearGaps’ was not declared in this scope; did you mean ‘seqan2::LinearGaps’?
  124 |         LinearGaps());
      |         ^~~~~~~~~~
      |         seqan2::LinearGaps
In file included from /usr/include/seqan/align.h:111:
/usr/include/seqan/align/dp_profile.h:300:26: note: ‘seqan2::LinearGaps’ declared here
  300 | typedef Tag<LinearGaps_> LinearGaps;
      |                          ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:120:29: error: ‘globalAlignment’ was not declared in this scope; did you mean ‘seqan2::globalAlignment’?
  120 |     /* const int score = */ globalAlignment(
      |                             ^~~~~~~~~~~~~~~
      |                             seqan2::globalAlignment
In file included from /usr/include/seqan/align.h:218:
/usr/include/seqan/align/global_alignment_specialized.h:121:5: note: ‘seqan2::globalAlignment’ declared here
  121 | int globalAlignment(Gaps<TSequenceH, TGapsSpecH> & gapsH,
      |     ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:136:14: error: expected ‘;’ before ‘align’
  136 |     TSequence align;
      |              ^~~~~~
      |              ;
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:137:29: error: ‘align’ was not declared in this scope; did you mean ‘std::align’?
  137 |     convertAlignment(graph, align);
      |                             ^~~~~
      |                             std::align
In file included from /usr/include/c++/14/bits/shared_ptr_base.h:66,
                 from /usr/include/c++/14/bits/shared_ptr.h:53,
                 from /usr/include/c++/14/bits/fs_path.h:46,
                 from /usr/include/c++/14/filesystem:52,
                 from /<<PKGBUILDDIR>>/src/MemoryMappedVector.hpp:15,
                 from /<<PKGBUILDDIR>>/src/MemoryMappedVectorOfVectors.hpp:8,
                 from /<<PKGBUILDDIR>>/src/AlignmentCandidates.hpp:5,
                 from /<<PKGBUILDDIR>>/src/Assembler.hpp:6,
                 from /<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:2:
/usr/include/c++/14/bits/align.h:61:1: note: ‘std::align’ declared here
   61 | align(size_t __align, size_t __size, void*& __ptr, size_t& __space) noexcept
      | ^~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:137:5: error: ‘convertAlignment’ was not declared in this scope; did you mean ‘seqan2::convertAlignment’?
  137 |     convertAlignment(graph, align);
      |     ^~~~~~~~~~~~~~~~
      |     seqan2::convertAlignment
In file included from /usr/include/seqan/graph_align.h:52:
/usr/include/seqan/graph_align/graph_impl_align.h:1666:1: note: ‘seqan2::convertAlignment’ declared here
 1666 | convertAlignment(String<TValue, TSpec1> const& mat,
      | ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AssemblerAlign1.cpp:138:42: error: ‘seqan’ was not declared in this scope; did you mean ‘seqan2’?
  138 |     const int totalAlignmentLength = int(seqan::length(align));
      |                                          ^~~~~
      |                                          seqan2
make[4]: *** [staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make:166: staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:155: staticLibrary/CMakeFiles/shastaStaticLibrary.dir/all] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[2]: *** [Makefile:139: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:25: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-11-23T10:30:04Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: binary
Build-Space: 22164
Build-Time: 19
Distribution: sid
Fail-Stage: build
Host Architecture: arm64
Install-Time: 75
Job: /tmp/debusine-fetch-exec-upload-oc8pd9wm/shasta_0.12.0-1.dsc
Machine Architecture: arm64
Package: shasta
Package-Time: 125
Source-Version: 0.12.0-1
Space: 22164
Status: attempted
Version: 0.12.0-1
--------------------------------------------------------------------------------
Finished at 2024-11-23T10:30:04Z
Build needed 00:02:05, 22164k disk space

Relations

Relation Direction Type Name
relates-to Source package shasta_0.12.0-1
relates-to Binary package seqan-apps-dbgsym_2.5.0~rc3+dfsg-1_arm64
relates-to Binary package seqan-apps_2.5.0~rc3+dfsg-1_arm64
relates-to Binary package libseqan2-dev_2.5.0~rc3+dfsg-1_all

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