sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-amd64-hades-06.freexian.com
+==============================================================================+
| seqan2 2.5.0~rc3+dfsg-1 (amd64) Sat, 23 Nov 2024 15:33:43 +0000 |
+==============================================================================+
Package: seqan2
Version: 2.5.0~rc3+dfsg-1
Source Version: 2.5.0~rc3+dfsg-1
Distribution: sid
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/1032088/system.tar.xz to /tmp/tmp.sbuild.RL4ec1T2Nx...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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I: NOTICE: Log filtering will replace 'build/seqan2-ov93Yq/resolver-5bUpYT' with '<<RESOLVERDIR>>'
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Get:1 http://deb.debian.org/debian sid InRelease [202 kB]
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Reading package lists...
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Calculating upgrade...
The following packages will be upgraded:
apt base-files diffstat libapt-pkg6.0t64 libxml-sax-perl
5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:3 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.14 [1395 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 diffstat amd64 1.67-1 [35.5 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
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Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
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| Fetch source files |
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Local sources
-------------
/tmp/debusine-fetch-exec-upload-zec_4jos/seqan2_2.5.0~rc3+dfsg-1.dsc exists in /tmp/debusine-fetch-exec-upload-zec_4jos; copying to chroot
I: NOTICE: Log filtering will replace 'build/seqan2-ov93Yq/seqan2-2.5.0~rc3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/seqan2-ov93Yq' with '<<BUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), python3, cmake, build-essential, fakeroot, zlib1g-dev, libbz2-dev, libboost-dev
Filtered Build-Depends: debhelper-compat (= 13), python3, cmake, build-essential, fakeroot, zlib1g-dev, libbz2-dev, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper
dh-autoreconf dh-strip-nondeterminism dwz fakeroot g++ g++-14
g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libarchive13t64 libasan8
libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0
libcrypt-dev libcurl4t64 libdebhelper-perl libelf1t64 libexpat1 libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
libjsoncpp26 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libproc2-0
libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0
librhash1 libstdc++-14-dev libtirpc-common libtirpc3t64 libtool libtsan2
libubsan1 libuv1t64 linux-libc-dev m4 media-types po-debconf procps python3
python3-minimal python3.12 python3.12-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build cpp-doc gcc-14-locales cpp-14-doc dh-make
g++-multilib g++-14-multilib gcc-14-doc gcc-multilib manpages-dev flex bison
gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu lrzip libboost-doc
libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev
libboost-container1.83-dev libboost-context1.83-dev
libboost-contract1.83-dev libboost-coroutine1.83-dev
libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
libc-devtools glibc-doc libstdc++-14-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc python3-tk
python3-venv python3.12-venv python3.12-doc binfmt-support
Recommended packages:
bzip2-doc manpages manpages-dev libarchive-cpio-perl libgpm2 libltdl-dev
libmail-sendmail-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper
dh-autoreconf dh-strip-nondeterminism dwz fakeroot g++ g++-14
g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libarchive13t64 libasan8
libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0
libcrypt-dev libcurl4t64 libdebhelper-perl libelf1t64 libexpat1 libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
libjsoncpp26 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libproc2-0
libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0
librhash1 libstdc++-14-dev libtirpc-common libtirpc3t64 libtool libtsan2
libubsan1 libuv1t64 linux-libc-dev m4 media-types po-debconf procps python3
python3-minimal python3.12 python3.12-minimal rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded.
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Get:52 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B]
Get:53 http://deb.debian.org/debian sid/main amd64 cmake-data all 3.31.1-1 [2267 kB]
Get:54 http://deb.debian.org/debian sid/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (amd64 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) amd64 (x86_64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.9-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.14 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-common_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 cmake_3.31.1-1 cmake-data_3.31.1-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-x86-64-linux-gnu_14.2.0-8 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.67-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-x86-64-linux-gnu_14.2.0-8 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-base_14.2.0-8 gcc-14-x86-64-linux-gnu_14.2.0-8 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libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-basedir-perl_0.09-2 libfile-find-rule-perl_0.34-3 libfile-listing-perl_6.16-1 libfile-sharedir-perl_1.118-3 libfile-stripnondeterminism-perl_1.14.0-1 libfont-ttf-perl_1.06-2 libgcc-14-dev_14.2.0-8 libgcc-s1_14.2.0-8 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libglib2.0-0t64_2.82.2-3 libgmp10_2:6.3.0+dfsg-2+b2 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-8 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1+b1 libhtml-form-perl_6.12-1 libhtml-html5-entities-perl_0.004-3 libhtml-parser-perl_3.83-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tokeparser-simple-perl_3.16-4 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_7.00-2 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-8 libicu72_72.1-5+b1 libidn2-0_2.3.7-2+b1 libimport-into-perl_1.002005-2 libio-html-perl_1.004-3 libio-interactive-perl_1.025-1 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libipc-run3-perl_0.049-1 libipc-system-simple-perl_1.30-2 libisl23_0.27-1 libiterator-perl_0.03+ds1-2 libiterator-util-perl_0.02+ds1-2 libitm1_14.2.0-8 libjansson4_2.14-2+b3 libjson-maybexs-perl_1.004008-1 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libldap-2.5-0_2.5.18+dfsg-3+b1 liblist-compare-perl_0.55-2 liblist-someutils-perl_0.59-1 liblist-utilsby-perl_0.12-2 liblsan0_14.2.0-8 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz1_1.15~pre2-1 liblz4-1_1.9.4-3+b1 liblzma5_5.6.3-1+b1 liblzo2-2_2.10-3+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmarkdown2_2.2.7-2.1 libmd0_1.1.0-2+b1 libmldbm-perl_2.05-4 libmodule-implementation-perl_0.09-2 libmodule-runtime-perl_0.016-2 libmoo-perl_2.005005-1 libmoox-aliases-perl_0.001006-2 libmount1_2.40.2-11 libmouse-perl_2.5.11-1+b1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libnamespace-clean-perl_0.27-2 libncursesw6_6.5-2+b1 libnet-domain-tld-perl_1.75-4 libnet-http-perl_6.23-1 libnet-ipv6addr-perl_1.02-1 libnet-netmask-perl_2.0002-2 libnet-ssleay-perl_1.94-2 libnetaddr-ip-perl_4.079+dfsg-2+b4 libnettle8t64_3.10-1+b1 libnghttp2-14_1.64.0-1 libnghttp3-9_1.4.0-1+b1 libngtcp2-16_1.6.0-1 libngtcp2-crypto-gnutls8_1.6.0-1 libnsl2_1.3.0-3+b3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.5-2+b1 libpackage-stash-perl_0.40-1 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libparams-classify-perl_0.015-2+b4 libparams-util-perl_1.102-3+b1 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.44-4 libperl5.40_5.40.0-7 libperlio-gzip-perl_0.20-1+b4 libperlio-utf8-strict-perl_0.010-1+b3 libpipeline1_1.5.8-1 libproc-processtable-perl_0.636-1+b3 libproc2-0_2:4.0.4-6 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.12.7-1 libpython3.12-minimal_3.12.7-3 libpython3.12-stdlib_3.12.7-3 libquadmath0_14.2.0-8 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librhash1_1.4.5-1 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b3 libselinux1_3.7-3+b1 libsemanage-common_3.7-2 libsemanage2_3.7-2+b1 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b3 libsereal-encoder-perl_5.004+ds-1+b3 libsframe1_2.43.1-5 libsmartcols1_2.40.2-11 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1+b1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 libstemmer0d_2.2.0-4+b2 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b3 libsub-quote-perl_2.006008-1 libsyntax-keyword-try-perl_0.30-1+b1 libsystemd0_257~rc2-3 libtasn1-6_4.19.0-3+b3 libterm-readkey-perl_2.38-2+b4 libtext-glob-perl_0.11-3 libtext-levenshteinxs-perl_0.03-5+b4 libtext-markdown-discount-perl_0.16-1+b3 libtext-xslate-perl_3.5.9-2+b1 libtime-duration-perl_1.21-2 libtime-moment-perl_0.44-2+b4 libtimedate-perl_2.3300-2 libtinfo6_6.5-2+b1 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3+b1 libtool_2.4.7-8 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-8 libubsan1_14.2.0-8 libuchardet0_0.0.8-1+b2 libudev1_257~rc2-3 libunicode-utf8-perl_0.62-2+b3 libunistring5_1.2-1+b1 liburi-perl_5.30-1 libuuid1_2.40.2-11 libuv1t64_1.48.0-7 libvariable-magic-perl_0.64-1+b1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-4 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxmlb2_0.3.21-1 libxs-parse-keyword-perl_0.46-1+b1 libxxhash0_0.8.2-2+b2 libyaml-0-2_0.2.5-1+b2 libyaml-libyaml-perl_0.902.0+ds-2+b1 libzstd1_1.5.6+dfsg-1+b1 lintian_2.120.0 linux-libc-dev_6.11.9-1 login_1:4.16.0-2+really2.40.2-11 login.defs_1:4.16.0-5 logsave_1.47.1-1+b1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-11 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 netbase_6.4 openssl_3.3.2-2 openssl-provider-legacy_3.3.2-2 passwd_1:4.16.0-5 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.40.0-7 perl-base_5.40.0-7 perl-modules-5.40_5.40.0-7 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 python3_3.12.7-1 python3-minimal_3.12.7-1 python3.12_3.12.7-3 python3.12-minimal_3.12.7-3 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-11 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: seqan2
Binary: seqan-apps, libseqan2-dev
Architecture: any all
Version: 2.5.0~rc3+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Michael R. Crusoe <crusoe@debian.org>, Kevin Murray <spam@kdmurray.id.au>
Homepage: https://www.seqan.de/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/seqan2
Vcs-Git: https://salsa.debian.org/med-team/seqan2.git
Testsuite: autopkgtest
Testsuite-Triggers: @builddeps@, libbam-dev, libboost-dev, libbz2-dev, zlib1g-dev
Build-Depends: debhelper-compat (= 13), python3 <!nocheck>, cmake
Build-Depends-Arch: zlib1g-dev, libbz2-dev, libboost-dev
Package-List:
libseqan2-dev deb libdevel optional arch=all
seqan-apps deb science optional arch=any
Checksums-Sha1:
6515e3a07829fe67a5c41eeabc847b817c3dafe0 84922684 seqan2_2.5.0~rc3+dfsg.orig.tar.xz
ddaf68f642e207de2d6562b9fe917e8a4ddb20fa 15152 seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz
Checksums-Sha256:
557039f2cad2e17a322f45fcf993384aa9150e06635f1aba62a2eba9ec38a811 84922684 seqan2_2.5.0~rc3+dfsg.orig.tar.xz
fff8ff33bd77ae1372ae934dde627140ae20a0028ff25014b2f43a436f81ed63 15152 seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz
Files:
cb775f6d511344c63fd6e02c359afe54 84922684 seqan2_2.5.0~rc3+dfsg.orig.tar.xz
913947673f5ec63f74ca42a74a937016 15152 seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz
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gpgv: Signature made Fri Nov 22 23:30:19 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./seqan2_2.5.0~rc3+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting seqan2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking seqan2_2.5.0~rc3+dfsg.orig.tar.xz
dpkg-source: info: unpacking seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip-some-apps-on-some-archs
dpkg-source: info: applying tweak_readmes
dpkg-source: info: applying 0001-FIX-Typo.patch
dpkg-source: info: applying 0002-FIX-version-check-test-failing-if-program-is-missing.patch
dpkg-source: info: applying 0003-INFRA-Strip-build-paths-from-apps.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package seqan2
dpkg-buildpackage: info: source version 2.5.0~rc3+dfsg-1
dpkg-buildpackage: info: source distribution experimental
dpkg-buildpackage: info: source changed by Enrico Seiler <enrico.seiler.debian@outlook.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find . -type f -name "*.pyc" -delete
if [ -d orig ] ; then \
for header in `find orig -name "*generated_forwards.h"` ; do \
mv ${header} `echo $header | sed 's?orig/??'` ; \
done ; \
fi
rm -rf orig
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars debian/files
rm -fr -- debian/seqan-apps/ debian/tmp/ debian/libseqan2-dev/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
export DEB_BUILD_ARCH=amd64
dh_auto_configure --arch -- \
-DSEQAN_STATIC_APPS=False \
-DSEQAN_DISABLE_VERSION_CHECK=YES \
-DSEQAN_STRIP_APPS_BUILD_PATH="/<<PKGBUILDDIR>>" \
-DSEQAN_NO_DOX=1
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN_STATIC_APPS=False -DSEQAN_DISABLE_VERSION_CHECK=YES -DSEQAN_STRIP_APPS_BUILD_PATH=/<<BUILDDIR>>/seqan2-2.5.0\~rc3\+dfsg -DSEQAN_NO_DOX=1 ..
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Initializing SeqAn Build System...
-- Scanning dependencies once in DEVELOP mode...
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1")
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Performing Test CXX14_BUILTIN
-- Performing Test CXX14_BUILTIN - Success
-- Looking for C++ include execinfo.h
-- Looking for C++ include execinfo.h - found
-- Found SeqAn: /<<PKGBUILDDIR>>/include (found version "2.5.0")
-- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR)
-- Detected git repository:
-- Selected repository dir: /<<PKGBUILDDIR>>
-- No revision system found.
-- Repository date not determined.
-- Repository revision not determined.
-- Configuring tests
-- Configuring tests
-- Configuring tests/align
-- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING)
-- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR)
-- Performing Test SSE4_SOURCE_RUNS
-- Performing Test SSE4_SOURCE_RUNS - Success (Compiled & Host CPU support)
-- Performing Test AVX2_SOURCE_RUNS
-- Performing Test AVX2_SOURCE_RUNS - Success (Compiled & Host CPU support)
-- Performing Test AVX512_SKX_SOURCE_RUNS
-- Performing Test AVX512_SKX_SOURCE_RUNS - Success (Compiled & Host CPU support)
-- Performing Test AVX512_CNL_SOURCE_RUNS
-- Performing Test AVX512_CNL_SOURCE_RUNS - Success (Compiled & Host CPU support)
-- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED
-- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED - Success
-- Performing Test SEQANSIMD_AVX512_SKX_SOURCE_RUNS
-- Performing Test SEQANSIMD_AVX512_SKX_SOURCE_RUNS - Success (Compiled & Host CPU support)
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Configuring tests/align_extend
-- Configuring tests/align_parallel
-- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING)
-- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR)
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Configuring tests/align_profile
-- Configuring tests/align_split
-- Configuring tests/alignment_free
-- Configuring tests/arg_parse
-- Configuring tests/bam_io
-- Configuring tests/basic
-- Configuring tests/bed_io
-- Configuring tests/blast
-- Configuring tests/consensus
-- Configuring tests/consensus_v2
-- Configuring tests/find
-- Configuring tests/gff_io
-- Configuring tests/graph_algorithms
-- Configuring tests/graph_align
-- Configuring tests/graph_msa
-- Configuring tests/graph_types
-- Configuring tests/index
-- Configuring tests/journaled_set
-- Configuring tests/journaled_string_tree
-- Configuring tests/map
-- Configuring tests/misc
-- Configuring tests/modifier
-- Configuring tests/modifier_cyclic_shape
-- Configuring tests/multiple_translation_units
-- Configuring tests/parallel
-- Configuring tests/parse_lm
-- Configuring tests/pipe
-- Configuring tests/platform
-- Configuring tests/random
-- Configuring tests/realign
-- Configuring tests/reduced_aminoacid
-- Configuring tests/rna_io
-- Configuring tests/roi_io
-- Configuring tests/score
-- Configuring tests/seeds
-- Configuring tests/seq_io
-- Configuring tests/sequence
-- Configuring tests/sequence_journaled
-- Configuring tests/simd
-- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING)
-- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR)
-- Intel Software Development Emulator not found, not building platform emulated tests.
-- Configuring tests/simple_intervals_io
-- Configuring tests/statistics
-- Configuring tests/store
-- Configuring tests/stream
-- Configuring tests/find_swift
-- Configuring tests/tabix_io
-- Configuring tests/translation
-- Configuring tests/test_ucsc_io
-- Configuring tests/vcf_io
-- Configuring demos
-- Found Python3: /usr/bin/python3 (found version "3.12.7") found components: Interpreter
-- Configuring apps
-- Configuring apps/alf
-- CTD testing was not configured.
-- Configuring apps/bs_tools
-- CTD testing was not configured.
-- CTD testing was not configured.
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CMake Warning:
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dh_auto_configure --indep -B build -- \
-DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 \
-DSEQAN_DISABLE_REVISION_INFO=1
cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 -DSEQAN_DISABLE_REVISION_INFO=1 ..
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake" "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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[ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -MF CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o.d -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_lcs.cpp"
make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/external_split_merge.cpp"
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -MF CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_local.cpp"
[ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/genomic_variants.cpp"
[ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/mason_options.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
[ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/methylation_levels.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
[ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/simulate_454.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 0%] Built target pair_align_local
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
[ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/simulate_base.cpp"
[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/simulate_genome.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target pair_align_global_0000
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake" "--color="
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make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/simulate_illumina.cpp"
[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/simulate_sanger.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target pair_align_global_0001
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target pair_align_global_0010
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c "/<<PKGBUILDDIR>>/apps/mason2/vcf_materialization.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target pair_align_global_0011
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
[ 1%] Linking CXX static library libmason_sim.a
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/mason2" && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1
/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
/usr/bin/ranlib libmason_sim.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target mason_sim
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 1%] Built target pair_align_global_0100
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_0101
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake" "--color="
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make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_0110
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_1000
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_1001
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_1010
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c "/<<PKGBUILDDIR>>/apps/pair_align/lib/pair_align_global.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_1011
make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/param_chooser" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c "/<<PKGBUILDDIR>>/apps/param_chooser/param_chooser.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_1100
make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/param_chooser" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c "/<<PKGBUILDDIR>>/apps/param_chooser/test_param_chooser.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Built target pair_align_global_1101
make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c "/<<PKGBUILDDIR>>/apps/rabema/prepare_sam.cpp"
[ 3%] Linking CXX executable ../../bin/param_chooser
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser" && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/param_chooser.dir/link.d CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Built target param_chooser
make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c "/<<PKGBUILDDIR>>/apps/rabema/rabema_build_gold_standard.cpp"
[ 3%] Linking CXX executable ../../bin/test_funcs_param_chooser
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/param_chooser" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/test_funcs_param_chooser.dir/link.d CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Built target test_funcs_param_chooser
make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c "/<<PKGBUILDDIR>>/apps/rabema/rabema_evaluate.cpp"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Built target pair_align_global_1110
make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c "/<<PKGBUILDDIR>>/apps/rabema/do_search.cpp"
[ 3%] Linking CXX executable ../../bin/rabema_prepare_sam
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rabema_prepare_sam.dir/link.d CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Built target rabema_prepare_sam
make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/razers" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c "/<<PKGBUILDDIR>>/apps/razers/razers.cpp"
[ 3%] Linking CXX executable ../../bin/rabema_do_search
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rabema_do_search.dir/link.d CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Built target rabema_do_search
make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/razers3" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 3%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c "/<<PKGBUILDDIR>>/apps/razers3/razers.cpp"
[ 4%] Linking CXX executable ../../bin/rabema_build_gold_standard
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rabema_build_gold_standard.dir/link.d CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 4%] Built target rabema_build_gold_standard
make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/razers3" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 4%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c "/<<PKGBUILDDIR>>/apps/razers3/simulate_reads.cpp"
[ 4%] Linking CXX executable ../../bin/rabema_evaluate
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rabema_evaluate.dir/link.d CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/razers3" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake" "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 4%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c "/<<PKGBUILDDIR>>/apps/razers3/quality2prob.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/razers3_simulate_reads.dir/link.d CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/rep_sep" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rep_sep" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rep_sep" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c "/<<PKGBUILDDIR>>/apps/rep_sep/rep_sep.cpp"
[ 4%] Linking CXX executable ../../bin/razers3_quality2prob
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/razers3_quality2prob.dir/link.d CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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[ 4%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sak" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c "/<<PKGBUILDDIR>>/apps/sak/sak.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/rep_sep" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/rep_sep.dir/link.d CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sam2matrix" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c "/<<PKGBUILDDIR>>/apps/sam2matrix/sam2matrix.cpp"
[ 4%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c "/<<PKGBUILDDIR>>/apps/razers/param_tabs.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/razers.dir/link.d CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/samcat" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/samcat" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/samcat" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c "/<<PKGBUILDDIR>>/apps/samcat/samcat.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sak" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1
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[ 4%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/searchjoin" && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -MF CMakeFiles/s4_search.dir/search.cpp.o.d -o CMakeFiles/s4_search.dir/search.cpp.o -c "/<<PKGBUILDDIR>>/apps/searchjoin/search.cpp"
[ 4%] Linking CXX executable ../../bin/sam2matrix
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sam2matrix" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/sam2matrix.dir/link.d CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/searchjoin" && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF CMakeFiles/s4_join.dir/join.cpp.o.d -o CMakeFiles/s4_join.dir/join.cpp.o -c "/<<PKGBUILDDIR>>/apps/searchjoin/join.cpp"
[ 5%] Linking CXX executable ../../bin/samcat
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/samcat" && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/samcat.dir/link.d CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Built target samcat
make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/seqan_tcoffee" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqan_tcoffee" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqan_tcoffee" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c "/<<PKGBUILDDIR>>/apps/seqan_tcoffee/seqan_tcoffee.cpp"
[ 5%] Linking CXX executable ../../bin/s4_search
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/searchjoin" && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/s4_search.dir/link.d CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Built target s4_search
make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/seqcons2" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqcons2" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c "/<<PKGBUILDDIR>>/apps/seqcons2/seqcons.cpp"
[ 5%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c "/<<PKGBUILDDIR>>/apps/seqcons2/seqcons_app.cpp"
[ 5%] Linking CXX executable ../../bin/s4_join
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/searchjoin" && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/s4_join.dir/link.d CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Built target s4_join
make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/sgip" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sgip" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 5%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sgip" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c "/<<PKGBUILDDIR>>/apps/sgip/sgip.cpp"
[ 6%] Linking CXX executable ../../bin/seqan_tcoffee
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqan_tcoffee" && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/seqan_tcoffee.dir/link.d CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 6%] Built target seqan_tcoffee
make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/snp_store" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/snp_store" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 6%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/snp_store" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c "/<<PKGBUILDDIR>>/apps/snp_store/snp_store.cpp"
[ 6%] Linking CXX executable ../../bin/sgip
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/sgip" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/sgip.dir/link.d CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 6%] Built target sgip
make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/splazers" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/splazers" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 6%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/splazers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c "/<<PKGBUILDDIR>>/apps/splazers/splazers.cpp"
[ 6%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c "/<<PKGBUILDDIR>>/apps/seqcons2/seqcons_options.cpp"
[ 6%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c "/<<PKGBUILDDIR>>/apps/razers3/param_tabs.cpp"
[ 7%] Linking CXX executable ../../bin/razers3
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/razers3.dir/link.d CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Built target razers3
make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/stellar" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/stellar" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/stellar" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c "/<<PKGBUILDDIR>>/apps/stellar/stellar.cpp"
[ 7%] Linking CXX executable ../../bin/seqcons2
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/seqcons2" && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/seqcons2.dir/link.d CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Built target seqcons2
make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/tree_recon" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/tree_recon" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/tree_recon" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c "/<<PKGBUILDDIR>>/apps/tree_recon/tree_recon.cpp"
[ 7%] Linking CXX executable ../../bin/snp_store
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/snp_store" && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/snp_store.dir/link.d CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Built target snp_store
make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/yara" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake" "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.3\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -MF CMakeFiles/yara_indexer.dir/indexer.cpp.o.d -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c "/<<PKGBUILDDIR>>/apps/yara/indexer.cpp"
[ 7%] Linking CXX executable ../../bin/tree_recon
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/tree_recon" && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/tree_recon.dir/link.d CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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[ 7%] Built target tree_recon
make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/apps/yara" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake" "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 7%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.3\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -MF CMakeFiles/yara_mapper.dir/mapper.cpp.o.d -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c "/<<PKGBUILDDIR>>/apps/yara/mapper.cpp"
[ 7%] Linking CXX executable ../../bin/splazers
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/splazers" && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/splazers.dir/link.d CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake" "--color="
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make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build
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[ 8%] Building CXX object tests/align/CMakeFiles/test_align.dir/test_align.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align.dir/test_align.cpp.o -MF CMakeFiles/test_align.dir/test_align.cpp.o.d -o CMakeFiles/test_align.dir/test_align.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align.cpp"
[ 8%] Linking CXX executable ../../bin/stellar
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/stellar" && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/stellar.dir/link.d CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake" "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 8%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -MF CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_global_equal_length.cpp"
[ 8%] Linking CXX executable ../../bin/yara_indexer
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/apps/yara" && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/yara_indexer.dir/link.d CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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[ 8%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -MF CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o.d -o CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_global_variable_length.cpp"
[ 8%] Linking CXX executable ../../bin/test_align
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/test_align.dir/link.d CMakeFiles/test_align.dir/test_align.cpp.o -o ../../bin/test_align -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake" "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 8%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -MF CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_local_equal_length.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length.dir/link.txt --verbose=1
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -MF CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o.d -o CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_local_variable_length.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file,CMakeFiles/test_align_simd_local_equal_length.dir/link.d CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_bugs.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_bugs.dir/test_align_bugs.cpp.o -MF CMakeFiles/test_align_bugs.dir/test_align_bugs.cpp.o.d -o CMakeFiles/test_align_bugs.dir/test_align_bugs.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_bugs.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -msse4 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/test_align_simd_global_equal_length.cpp.o -MF CMakeFiles/test_align_simd_global_equal_length_sse4.dir/test_align_simd_global_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_global_equal_length_sse4.dir/test_align_simd_global_equal_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_global_equal_length.cpp"
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length.dir/link.txt --verbose=1
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/DependInfo.cmake" "--color="
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cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx2 -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/test_align_simd_global_equal_length.cpp.o -MF CMakeFiles/test_align_simd_global_equal_length_avx2.dir/test_align_simd_global_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_global_equal_length_avx2.dir/test_align_simd_global_equal_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_global_equal_length.cpp"
[ 8%] Linking CXX executable ../../bin/test_align_bugs
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_bugs.dir/link.txt --verbose=1
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 8%] Built target test_align_bugs
make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/DependInfo.cmake" "--color="
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make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 8%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/<<PKGBUILDDIR>>/include" -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -fopenmp -MD -MT tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o -MF CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o.d -o CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o -c "/<<PKGBUILDDIR>>/tests/align/test_align_simd_global_equal_length.cpp"
c++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[4]: *** [apps/yara/CMakeFiles/yara_mapper.dir/build.make:82: apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:22530: apps/yara/CMakeFiles/yara_mapper.dir/all] Error 2
make[3]: *** Waiting for unfinished jobs....
E: ABORT: Received TERM signal (requesting cleanup and shutdown)
E: ABORT: Received TERM signal (requesting cleanup and shutdown)
--------------------------------------------------------------------------------
Build finished at 2024-11-23T15:56:58Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: amd64
Build Type: binary
Build-Space: 2489132
Build-Time: 1355
Distribution: sid
Fail-Stage: build
Host Architecture: amd64
Install-Time: 21
Job: /tmp/debusine-fetch-exec-upload-zec_4jos/seqan2_2.5.0~rc3+dfsg-1.dsc
Machine Architecture: amd64
Package: seqan2
Package-Time: 1395
Source-Version: 2.5.0~rc3+dfsg-1
Space: 2489132
Status: attempted
Version: 2.5.0~rc3+dfsg-1
--------------------------------------------------------------------------------
Finished at 2024-11-23T15:56:58Z
Build needed 00:23:15, 2489132k disk space