#include <readfilter.hpp>
|
enum | FilterName {
read = 0
, wrong_name
, wrong_refpos
, excluded_feature
,
min_score
, min_sec_score
, max_overhang
, min_end_matches
,
min_mapq
, split
, repeat
, defray
,
defray_all
, random
, min_base_qual
, subsequence
,
filtered
, proper_pair
, unmapped
, annotation
,
incorrectly_mapped
, last
} |
|
◆ FilterName
Enumerator |
---|
read | |
wrong_name | |
wrong_refpos | |
excluded_feature | |
min_score | |
min_sec_score | |
max_overhang | |
min_end_matches | |
min_mapq | |
split | |
repeat | |
defray | |
defray_all | |
random | |
min_base_qual | |
subsequence | |
filtered | |
proper_pair | |
unmapped | |
annotation | |
incorrectly_mapped | |
last | |
◆ Counts()
◆ keep()
bool vg::Counts::keep |
( |
| ) |
|
|
inline |
◆ operator+=()
◆ reset()
void vg::Counts::reset |
( |
| ) |
|
|
inline |
◆ set_paired_all()
Counts & vg::Counts::set_paired_all |
( |
| ) |
|
|
inline |
If not all reads were filtered, count filtered ones as unfiltered.
◆ set_paired_any()
Counts & vg::Counts::set_paired_any |
( |
| ) |
|
|
inline |
If any read was filtered, count the other read as filtered.
◆ counts
vector<size_t> vg::Counts::counts |
The documentation for this struct was generated from the following file: