Here is a list of all namespace functions with links to the namespace documentation for each function:
- a -
- a_star() : vg::algorithms
- add_alt_allele() : vg
- add_connecting_edges_to_subgraph() : vg::algorithms
- add_descendants_to_subgraph() : vg
- add_edges_only() : vg
- add_log() : vg
- add_log10() : vg
- add_nodes_and_edges() : vg
- add_path() : vg
- add_path_to_graph() : vg
- add_subpaths_to_subgraph() : vg::algorithms
- add_thread_edges_to_set() : vg
- add_thread_nodes_to_set() : vg
- addArbitraryTelomerePair() : vg
- adjacent_mappings() : vg
- advance_split() : vg
- aligned_interval() : vg
- alignment_end() : vg
- alignment_ends() : vg
- alignment_from_length() : vg
- alignment_from_path() : vg
- alignment_is_valid() : vg
- alignment_middle() : vg
- alignment_path_offsets() : vg::algorithms
- alignment_quality_char_to_short() : vg::io
- alignment_quality_per_node() : vg
- alignment_quality_short_to_char() : vg::io
- alignment_refpos_to_path_offsets() : vg
- alignment_set_distance_to_correct() : vg
- alignment_start() : vg
- alignment_to_bam() : vg
- alignment_to_bam_internal() : vg
- alignment_to_gaf() : vg::io
- alignment_to_length() : vg
- alignment_to_sam() : vg
- alignment_to_sam_internal() : vg
- allAmbiguousToN() : vg
- allATGC() : vg
- allATGCN() : vg
- allele_to_string() : vg
- annotate_with_initial_path_positions() : vg::algorithms
- annotate_with_node_path_positions() : vg::algorithms
- annotate_with_path_positions() : vg::algorithms
- append_cigar_operation() : vg
- append_handle_graph() : handlegraph::algorithms
- append_mapping_sequence() : vg::algorithms
- append_multipath_alignment() : vg
- append_path() : vg
- append_path_handle_graph() : handlegraph::algorithms
- apply_orientations() : handlegraph::algorithms
- approx_gbwt_memory() : vg
- approx_graph_load_memory() : vg
- approx_graph_memory() : vg
- approx_num_vars() : vg
- are_equivalent() : handlegraph::algorithms
- are_equivalent_with_paths() : handlegraph::algorithms
- as_handle() : handlegraph
- as_integer() : handlegraph
- as_integers() : handlegraph
- as_net_handle() : handlegraph
- as_path_handle() : handlegraph
- assign_child_snarls_to_traversals() : vg
- augment() : vg
- augment_impl() : vg