Here is a list of all variables with links to the classes they belong to:
- b -
- backbone : vg::FlowSort::Growth
- backed_up : vg::io::BlockedGzipOutputStream
- background_sampler : vg::NGSSimulator
- backing : vg::BackTranslatingAlignmentEmitter, vg::ExtraNodeGraph, vg::SourceSinkOverlay, vg::SurjectingAlignmentEmitter
- backing_files : vg::HTSWriter
- backing_graph : vg::GenomeState, vg::SnarlGraph, vg::SubgraphOverlay, vg::SubpathOverlay
- backing_heads : vg::SourceSinkOverlay
- backing_path_graph : vg::PathSubgraphOverlay
- backing_stream : vg::io::StreamMultiplexer
- backing_tails : vg::SourceSinkOverlay
- backward : vg::KmerMatch, vg::NodeTraversal, vg::Visit
- bad_mapping_index : vg::AlignmentValidity
- band_begin : vg::AlignmentChainModelVertex
- band_idx : vg::AlignmentChainModelVertex
- band_multimaps : vg::Mapper
- banded_matrices : vg::BandedGlobalAligner< IntType >
- base : vg::io::hFILE_cppstream, vg::WideningPRNG< PRNG, OutType >
- base_graph : vg::AugmentedGraph
- base_locks : vg::Packer
- base_pileup : vg::NodePileup
- baseline_error_large : vg::PoissonSupportSnarlCaller
- baseline_error_small : vg::PoissonSupportSnarlCaller
- bases : vg::BasePileup
- bases_per_chunk : vg::Constructor
- batch_file_prefix : vg::HaplotypeIndexer
- batch_size : vg::RebuildParameters
- begin : vg::algorithms::kmer_t, vg::algorithms::walk_t, vg::kmer_t, vg::MaximalExactMatch, vg::PathNode
- BGZF_FOOTER_LENGTH : vg::HTSWriter
- bgzip_in : vg::io::MessageIterator
- bgzip_out : vg::io::MessageEmitter
- bidirectional_haplo_tx_gbwt : vg::IndexingParameters
- bin_size : vg::Packer
- bin_to_ranges : vg::StreamIndexBase
- bins_by_id_prefix : vg::StreamIndexBase
- bit_length : vg::BitString
- bits : vg::BitString
- block_length : gafkluge::GafRecord
- border : vg::PhaseUnfolder
- border_offsets : vg::Exon
- border_steps : vg::Exon
- bottom : haplo::int_itvl_t
- bottom_diag : vg::BandedGlobalAligner< IntType >::BAMatrix
- buf : vg::io::fdistream, vg::io::fdostream, vg::io::streamistream
- buffer : vg::io::BlockedGzipOutputStream, vg::io::fdinbuf, vg::io::streaminbuf, vg::ParallelKFFReader, vg::VcfBuffer
- buffer_size : vg::ReadFilter< Read >, vg::Recombinator::Parameters
- bufSize : vg::io::fdinbuf, vg::io::streaminbuf
- build : GBWTConfig
- BUILD_HOST : vg::Version
- build_jobs : GBWTConfig
- BUILD_USER : vg::Version
- burn_in : vg::MCMCGenotyper
- by_id : vg::PathIndex
- by_start : vg::PathIndex
- byte_count : vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream