Here is a list of all class members with links to the classes they belong to:
- l -
- lane : vg::ReplaceSnarlHaplotypeCommand
- large_alignment_band_padding : vg::VariantAdder
- larger_prime : vg::ShuffledPairs
- last : vg::Counts, vg::FeatureSet::Feature
- last_checkin : vg::Watchdog::thread_state_t
- last_correct_stage() : vg::Funnel
- last_group_min_id : vg::StreamIndexBase
- last_node_length : vg::PathIndex
- last_progress : vg::Progressive
- last_tagged_stage() : vg::Funnel
- latest() : vg::Funnel
- layout_order : vg::DagifiedGraph
- layout_order_of_handle() : vg::DagifiedGraph
- LazyRNG() : vg::LazyRNG
- lcp : vg::BaseMapper
- lcp_ind : vg::Filter
- left : vg::Support
- left_border : vg::Viz
- left_degree() : vg::VG
- left_ends : vg::ConstructedChunk
- left_full : vg::GaplessExtension
- left_handle_trans : vg::JoinedSpliceGraph
- left_maximal : vg::GaplessExtension
- left_seed_node() : vg::JoinedSpliceGraph
- left_splice_node() : vg::JoinedSpliceGraph
- left_splice_offset : vg::JoinedSpliceGraph
- left_subgraph : vg::JoinedSpliceGraph
- left_telomere_node : vg::PhasedGenome::Haplotype
- LegacyCaller() : vg::LegacyCaller
- len : vg::SeqComplexity< MaxOrder >
- length : haplo::haplo_DP_column, haplo::hDP_gbwt_graph_accessor< GBWTType >, MappingRun, ReferenceInterval, vg::algorithms::Anchor, vg::algorithms::GFAParser, vg::algorithms::walk_t, vg::BitString, vg::GaplessExtension, vg::HaplotypePartitioner::Subchain, vg::mapping_t, vg::MaximalExactMatch, vg::MEMAccelerator, vg::MinimizerMapper::Minimizer, vg::Path, vg::VG, vg::WFAAlignment, vg::WFANode
- lengths : vg::FragmentLengthDistribution
- less_than() : vg::StreamSorter< Message >
- likelihood : vg::Genotype
- likelihood_ln : vg::Genotyper::Affinity
- likelihoods() : vg::VG
- likely_mate_positions() : vg::Mapper
- likely_mismapping() : vg::MultipathMapper
- likely_misrescue() : vg::MultipathMapper
- limit() : MappingRun
- line_number : vg::algorithms::GFAFormatError
- linear_haplo_structure() : haplo::linear_haplo_structure
- linear_structure : vg::HaplotypePartitioner::Parameters
- LinearScoreProvider() : haplo::LinearScoreProvider
- list_names : GBWTConfig
- literal_target_memory_usage() : vg::IndexingPlan
- load() : vg::Packer, vg::Packers, vg::Paths, vg::StreamIndexBase, vg::Translator, xg::XGPath
- load_alignments() : vg::MSAConverter
- load_bed() : vg::FeatureSet
- load_from_file() : vg::Packer
- load_from_old_version() : xg::XGPath
- load_gbwtgraph() : GraphHandler
- load_gbz() : GraphHandler
- load_old() : vg::Haplotypes::TopLevelChain
- load_one() : vg::io::VPKG
- load_pack_as_supports() : vg::SupportAugmentedGraph
- load_supports() : vg::SupportAugmentedGraph
- load_translations() : vg::AugmentedGraph
- local_handle() : xg::XGPath
- Lock() : vg::GraphSynchronizer::Lock
- lock() : vg::GraphSynchronizer::Lock
- locked_nodes : vg::GraphSynchronizer::Lock, vg::GraphSynchronizer
- locus : vg::Alignment
- LOCUS_MATCH_ANY : handlegraph::PathMetadata
- LOCUS_MATCH_NUMERICAL_WITHOUT_HAPLOTYPE : handlegraph::PathMetadata
- locus_to_variant() : vg::Genotyper
- log_alignment() : vg::MinimizerMapper
- log_base : vg::GSSWAligner, vg::SpliceStats
- log_bits() : vg::MinimizerMapper
- log_continue_factor() : haplo::haploMath::RRMemo
- log_continue_probability : haplo::haploMath::RRMemo
- log_likelihood : vg::Genotype
- log_likelihood_approx_factor : vg::MultipathMapper
- log_name() : vg::MinimizerMapper
- log_population_size() : haplo::haploMath::RRMemo
- log_posterior : vg::Genotype
- log_prior : vg::Genotype
- log_recombination_penalty() : haplo::haploMath::RRMemo
- log_target() : vg::MCMCGenotyper
- logRRDiff() : haplo::haploMath::RRMemo
- logS() : haplo::haploMath::RRMemo
- logS_bases : haplo::haploMath::RRMemo
- logT() : haplo::haploMath::RRMemo
- logT_base : haplo::haploMath::RRMemo
- LONG_LIMIT : vg::MinimizerMapper
- long_opt : vg::BaseOption< Value, Parser >
- long_options : vg::ConfigurableParser
- long_options_used : vg::ConfigurableParser
- long_ref_contig : vg::Deconstructor
- longest_detectable_gap() : vg::GSSWAligner
- longest_paths_in_forest() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
- lookback_item_hard_cap : vg::MinimizerMapper
- lookback_scale_factor : vg::MinimizerMapper
- lookup_for_read_in() : vg::read_alignment_index_t
- lookup_in() : vg::alignment_index_t
- loop_left : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- loop_right : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- low_complexity_p_value : vg::Surjector
- lower_bound : vg::BREAKPOINT
- lower_bound_heuristic : vg::TargetValueSearch
- lowercase_warned_alt : vg::Constructor
- lowercase_warned_sequences : vg::Constructor
- lru_cache_size : vg::Packer
- lv0_alt_len : vg::Deconstructor::NestingInfo
- lv0_ref_len : vg::Deconstructor::NestingInfo
- lv0_ref_name : vg::Deconstructor::NestingInfo
- lv0_ref_start : vg::Deconstructor::NestingInfo