Here is a list of all functions with links to the classes they belong to:
- d -
- DagifiedGraph() : vg::DagifiedGraph
- dagify() : vg::VG
- data_size() : vg::SmallBitset
- decode() : vg::MIPayload
- decode_rgfa_tags() : vg::algorithms::GFAParser
- decompose_alignments() : vg::MultipathAlignmentGraph
- decompose_genotype_fast() : vg::WindowedVcfBuffer
- deconstruct() : vg::Deconstructor
- deconstruct_graph() : vg::Deconstructor
- deconstruct_graph_top_down() : vg::Deconstructor
- deconstruct_site() : vg::Deconstructor
- Deconstructor() : vg::Deconstructor
- decrement_node_ids() : vg::VG
- deduplicate_alt_alns() : vg::MultipathAlignmentGraph
- deduplicate_cluster_pairs() : vg::MEMClusterer
- deep_contents() : vg::SnarlManager
- default_build_jobs() : GBWTConfig
- default_context_length() : GBWTConfig
- default_distance() : vg::WFAExtender::ErrorModel
- default_gap_length() : vg::WFAExtender::ErrorModel
- default_gaps() : vg::WFAExtender::ErrorModel
- default_merge_jobs() : GBWTConfig
- default_mismatches() : vg::WFAExtender::ErrorModel
- default_num_paths() : GBWTConfig
- default_num_paths_local() : GBWTConfig
- deflect_to_matrix() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
- Deflection() : vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
- del_predecessor() : vg::WFATree
- delete_haplotype() : vg::GenomeState
- delete_variant_index() : vg::VCFTraversalFinder
- deletion_filter() : vg::Filter
- DeletionAligner() : vg::DeletionAligner
- density() : vg::truncated_normal_distribution< T >
- dependency_order() : vg::IndexRegistry
- dependents() : vg::IndexingPlan
- depth_filter() : vg::Filter
- describe() : vg::io::VPKG
- deserialize() : handlegraph::Serializable, handlegraph::TriviallySerializable, vg::VG
- deserialize_members() : handlegraph::Serializable, xg::XG
- destroy_edge() : handlegraph::DeletableHandleGraph, vg::VG
- destroy_handle() : handlegraph::DeletableHandleGraph, vg::VG
- destroy_node() : vg::VG
- destroy_path() : handlegraph::MutablePathHandleGraph, vg::VG
- destroy_paths() : handlegraph::MutablePathHandleGraph
- destroy_progress() : vg::Progressive
- determine_distance_correlation() : vg::MultipathMapper
- dfs() : vg::FlowSort, vg::VG
- dfs_gbwt() : vg::MinimizerMapper
- DiagramExplainer() : vg::DiagramExplainer
- DinucleotideMachine() : vg::DinucleotideMachine
- discard_bytes() : vg::io::StreamMultiplexer
- discard_to_breakpoint() : vg::io::StreamMultiplexer
- discrete_distribution() : vg::discrete_distribution< T >
- discrete_uniform_sample() : vg::SnarlManager
- disjoint() : haplo::int_itvl_t
- display() : vg::AlignmentChainModel, vg::MEMChainModel
- display_dot() : vg::AlignmentChainModel, vg::MEMChainModel
- dissociate() : handlegraph::TriviallySerializable
- distance() : vg::MatchPos, vg::MultipathMapper
- distance_between() : vg::MinimizerMapper, vg::MultipathMapper
- distance_between_positions() : vg::Filter
- distance_between_seeds() : vg::SnarlDistanceIndexClusterer
- distance_to_annotation() : vg::MinimizerMapper
- divide_handle() : handlegraph::MutableHandleGraph, vg::VG
- divide_mapping() : vg::Paths
- divide_node() : vg::VG
- divide_path() : vg::VG
- do_poa() : vg::DozeuInterface
- do_rescue_alignment() : vg::MultipathMapper
- DotDumpExplainer() : vg::DotDumpExplainer< T >
- downsample_chunks() : vg::Surjector
- DozeuPinningOverlay() : vg::DozeuPinningOverlay
- DPScoreComparator() : vg::MEMClusterer::DPScoreComparator
- draw() : vg::Viz
- draw_graph() : vg::Viz
- drop_prefix() : vg::BitString
- dump() : vg::GenomeState, vg::SnarlState
- dump_chaining_problem() : vg::MinimizerMapper
- dump_debug_clustering() : vg::MinimizerMapper
- dump_debug_extension_set() : vg::MinimizerMapper
- dump_debug_minimizers() : vg::MinimizerMapper
- dump_debug_query() : vg::MinimizerMapper
- dump_debug_seeds() : vg::MinimizerMapper
- dump_debug_sequence() : vg::MinimizerMapper
- dump_to_stream() : xg::XG
- duplication_filter() : vg::Filter