Here is a list of all variables with links to the classes they belong to:
- t -
- tag : vg::Funnel::Item, vg::Funnel::Stage, vg::io::ProtobufEmitter< T >
- tag_length : vg::Funnel::Item
- tag_space : vg::Funnel::Stage
- tag_start : vg::Funnel::Item
- tag_to_loader : vg::io::Registry::Tables
- tag_to_protobuf : vg::io::Registry::Tables
- tags : GBWTConfig
- tags_to_set : GBWTConfig
- tail_gap_memo_max_size : vg::MultipathAlignmentGraph
- target : vg::InsufficientInputException
- TARGET_LENGTH : vg::WFANode
- target_memory_usage : vg::IndexRegistry
- target_offset : vg::WFANode
- targets : vg::IndexingPlan
- task_name : vg::Watchdog::thread_state_t
- telomere_pair : vg::SwapHaplotypesCommand
- telomeres : vg::GenomeState
- test_mean : vg::BenchmarkResult
- test_stddev : vg::BenchmarkResult
- thin_alignment_cutoff : vg::VariantAdder
- thread_breakpoint_cursors : vg::io::StreamMultiplexer
- thread_chunk_inflation_factor : vg::IndexingParameters
- thread_extension : vg::Mapper
- thread_mode : GBWTConfig
- thread_names : GBWTConfig
- thread_output : GBWTConfig
- thread_queue_byte_counts : vg::io::StreamMultiplexer
- thread_queue_empty_slots : vg::io::StreamMultiplexer
- thread_queue_filled_slots : vg::io::StreamMultiplexer
- thread_queue_mutexes : vg::io::StreamMultiplexer
- thread_queues : vg::io::StreamMultiplexer
- thread_streams : vg::io::StreamMultiplexer
- threads : HaplotypesConfig, vg::ReadFilter< Read >
- tick_chain_parent : vg::subcommand::TickChainLink
- time_used : vg::Alignment
- timed_out : vg::Watchdog::thread_state_t
- timeout : vg::Watchdog
- tmpfstream_locks : vg::Packer
- tmpfstreams : vg::Packer
- to : vg::Alignment, vg::Edge, vg::Translation, vg::WFATree
- to_correct : vg::Alignment
- to_end : vg::Edge
- to_idx : vg::MEMClusterer::HitEdge
- to_length : vg::Edit
- to_matrix : vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
- to_node_id : vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
- to_remove : GBWTConfig
- to_swap : vg::SwapHaplotypesCommand
- top : haplo::int_itvl_t
- top_border : vg::Viz
- top_diag : vg::BandedGlobalAligner< IntType >::BAMatrix
- top_k : vg::PoissonSupportSnarlCaller
- top_level_chains : vg::Haplotypes::Header
- top_m : vg::PoissonSupportSnarlCaller
- top_tracebacks : vg::MultipathMapper
- topological_order : vg::BandedGlobalAligner< IntType >
- TOTAL_BITS : vg::BitString
- total_kmers : vg::Haplotypes::Header
- total_seq_length : vg::BaseMapper, vg::NGSSimulator, vg::Sampler
- total_size : vg::RebuildJob
- total_subchains : vg::Haplotypes::Header
- track_components : vg::MEMClusterer::HitGraph
- track_correctness : vg::MinimizerMapper
- track_provenance : vg::MinimizerMapper
- transcript_names : vg::TranscriptPath
- transcript_tag : vg::Transcriptome
- transition_distrs_1 : vg::NGSSimulator
- transition_distrs_2 : vg::NGSSimulator
- transition_table : vg::DinucleotideMachine
- translate_through : vg::io::GafAlignmentEmitter
- translation : vg::BackTranslatingAlignmentEmitter, vg::VCFOutputCaller
- translations : vg::Translator
- translator : vg::AugmentedGraph, vg::Genotyper
- trav : vg::MCMCCaller
- trav_padding : vg::GAFOutputCaller
- traversal : vg::mapping_t
- traversal_alg : vg::Genotyper
- traversal_finder : vg::FlowCaller, vg::LegacyCaller, vg::NestedFlowCaller, vg::SmallSnarlSimplifier, vg::VCFGenotyper
- traversals_only : vg::FlowCaller, vg::NestedFlowCaller, vg::VCFGenotyper
- travs : vg::NestedFlowCaller::CallRecord
- tree : vg::TreeSubgraph
- trim_indels : vg::Constructor
- truncation_multiplicity_mq_limit : vg::MultipathMapper
- tumor_supports : vg::BREAKPOINT
- tvs : vg::TVSClusterer
- type : ReferenceInterval, vg::GFFRecord, vg::HaplotypePartitioner::Subchain, vg::Haplotypes::Subchain, vg::Snarl
- type_to_bare_loaders : vg::io::Registry::Tables
- type_to_saver : vg::io::Registry::Tables