vg
tools for working with variation graphs
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algorithms Directory Reference

Files

 a_star.hpp
 
 alignment_path_offsets.cpp
 
 alignment_path_offsets.hpp
 
 approx_path_distance.cpp
 
 approx_path_distance.hpp
 
 back_translate.cpp
 
 back_translate.hpp
 
 chain_items.cpp
 
 chain_items.hpp
 
 component.cpp
 
 component.hpp
 
 count_covered.hpp
 
 coverage_depth.cpp
 
 coverage_depth.hpp
 
 dfs.cpp
 
 dfs.hpp
 
 disjoint_components.cpp
 
 disjoint_components.hpp
 
 distance_to_head.cpp
 
 distance_to_head.hpp
 
 distance_to_tail.cpp
 
 distance_to_tail.hpp
 
 expand_context.cpp
 
 expand_context.hpp
 
 extract_connecting_graph.cpp
 
 extract_connecting_graph.hpp
 
 extract_containing_graph.cpp
 
 extract_containing_graph.hpp
 
 extract_extending_graph.cpp
 
 extract_extending_graph.hpp
 
 find_gbwt.cpp
 
 find_gbwt.hpp
 
 find_gbwtgraph.cpp
 
 find_gbwtgraph.hpp
 
 find_translation.cpp
 
 find_translation.hpp
 
 gfa_to_handle.cpp
 
 gfa_to_handle.hpp
 
 id_sort.cpp
 
 id_sort.hpp
 
 intersect_path_offsets.cpp
 
 intersect_path_offsets.hpp
 
 jump_along_path.cpp
 
 jump_along_path.hpp
 
 k_widest_paths.cpp
 
 k_widest_paths.hpp
 
 kmer.cpp
 
 kmer.hpp
 
 locally_expand_graph.cpp
 
 locally_expand_graph.hpp
 
 merge.cpp
 
 merge.hpp
 
 min_cut_graph.cpp
 
 min_cut_graph.hpp
 
 nearest_offsets_in_paths.cpp
 
 nearest_offsets_in_paths.hpp
 
 next_pos_chars.cpp
 
 next_pos_chars.hpp
 
 normalize.cpp
 
 normalize.hpp
 
 pad_band.cpp
 
 pad_band.hpp
 
 path_string.cpp
 
 path_string.hpp
 
 prune.cpp
 
 prune.hpp
 
 prune_to_connecting_graph.cpp
 
 prune_to_connecting_graph.hpp
 
 ref_path_distance.cpp
 
 ref_path_distance.hpp
 
 shortest_cycle.cpp
 
 shortest_cycle.hpp
 
 simplify_siblings.cpp
 
 simplify_siblings.hpp
 
 sorted_id_ranges.cpp
 
 sorted_id_ranges.hpp
 
 subgraph.cpp
 
 subgraph.hpp
 
 three_edge_connected_components.cpp
 
 three_edge_connected_components.hpp
 
 walk.cpp
 
 walk.hpp