Here is a list of all functions with links to the classes they belong to:
- o -
- object_end() : vg::ProblemDumpExplainer
- object_start() : vg::ProblemDumpExplainer
- of_node() : vg::Paths
- offset() : vg::position_t
- offsets_in_paths() : xg::XG
- on_group() : vg::io::MessageEmitter, vg::io::ProtobufEmitter< T >
- on_message() : vg::io::ProtobufEmitter< T >
- on_path_edit() : vg::FeatureSet
- one_end_anchored_filter() : vg::Filter
- open_all() : vg::StreamSorter< Message >
- open_fd() : handlegraph::TriviallySerializable
- operator bool() : vg::AlignmentValidity, vg::WFAAlignment
- operator Number() : vg::Range< Number >
- operator Value &() : vg::BaseOption< Value, Parser >
- operator!=() : handlegraph::PathForEachSocket::iterator, vg::algorithms::TracedScore, vg::alignment_index_t, vg::BitString, vg::ChainIterator, vg::edit_t, vg::GaplessExtension, vg::IncrementIter, vg::io::MessageIterator, vg::io::ProtobufIterator< T >, vg::NodeSide, vg::NodeTraversal, vg::path_mapping_t, vg::path_t, vg::PhasedGenome::iterator, vg::position_t, vg::read_alignment_index_t, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator
- operator&=() : vg::SmallBitset
- operator()() : compare_gaf, greater_gaffile, std::hash< const vg::Snarl >, std::hash< handlegraph::edge_t >, std::hash< handlegraph::handle_t >, std::hash< handlegraph::net_handle_t >, std::hash< handlegraph::path_handle_t >, std::hash< handlegraph::step_handle_t >, std::hash< pair< A, B > >, std::hash< std::tuple< TT... > >, std::hash< vg::NodeSide >, std::hash< vg::NodeTraversal >, vg::BBEdgeHash, vg::discrete_distribution< T >, vg::DistanceHeuristic, vg::Genotyper::hash_ambiguous_allele_set, vg::Genotyper::hash_node_traversal, vg::Genotyper::hash_oriented_edge, vg::IncrementalSubgraph::FCmp, vg::IncrementalSubgraph::IterFCmp, vg::LazyRNG, vg::MappingHash, vg::MEMClusterer::DPScoreComparator, vg::NestedCachedPackedTraversalSupportFinder::snarl_less, vg::normal_distribution< T >, vg::ReadMasker, vg::SnarlMinDistance, vg::state_hash, vg::subcommand::Subcommand, vg::TipAnchoredMaxDistance, vg::truncated_normal_distribution< T >, vg::uniform_int_distribution< T >, vg::uniform_real_distribution< T >, vg::wang_hash< handle_t >, vg::wang_hash< handlegraph::net_handle_t >, vg::wang_hash< NodeSide >, vg::wang_hash< NodeTraversal >, vg::wang_hash< path_handle_t >, vg::wang_hash< std::pair< A, B > >, vg::wang_hash< T * >, vg::wang_hash< T, typename std::enable_if< std::is_integral< T >::value >::type >, vg::WideningPRNG< PRNG, OutType >
- operator*() : handlegraph::PathForEachSocket::iterator, vg::ChainIterator, vg::count_back_inserter< T >, vg::IncrementIter, vg::io::MessageIterator, vg::io::ProtobufIterator< T >, vg::PhasedGenome::iterator, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator
- operator+() : vg::VectorView< Item >::const_iterator
- operator++() : handlegraph::PathForEachSocket::iterator, vg::ChainIterator, vg::count_back_inserter< T >, vg::IncrementIter, vg::io::MessageIterator, vg::io::ProtobufIterator< T >, vg::PhasedGenome::iterator, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator
- operator+=() : vg::Counts, vg::VectorView< Item >::const_iterator
- operator-() : vg::VectorView< Item >::const_iterator
- operator--() : vg::VectorView< Item >::const_iterator
- operator-=() : vg::VectorView< Item >::const_iterator
- operator->() : vg::ChainIterator, vg::VectorView< Item >::const_iterator
- operator<() : job_type, vg::algorithms::TracedScore, vg::GaplessExtension, vg::MatchPos, vg::MinimizerMapper::Minimizer, vg::NodeSide, vg::NodeTraversal, vg::WFAPoint
- operator=() : handlegraph::PathForEachSocket::iterator, vg::algorithms::Anchor, vg::AlignmentChainModelVertex, vg::BaseOption< Value, Parser >, vg::BitString, vg::connection_t, vg::count_back_inserter< T >, vg::edit_t, vg::HTSAlignmentEmitter, vg::HTSWriter, vg::IncrementIter, vg::IndexedVG::CacheEntry, vg::IndexRegistry, vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream, vg::io::MessageEmitter, vg::io::ProtobufEmitter< T >, vg::io::StreamMultiplexer, vg::MaximalExactMatch, vg::MEMChainModelVertex, vg::multipath_alignment_t, vg::ParallelKFFReader, vg::path_mapping_t, vg::path_t, vg::Paths, vg::PhasedGenome::iterator, vg::PhasedGenome, vg::position_t, vg::QualAdjXdropAligner, vg::Range< Number >, vg::SmallBitset, vg::SnarlManager, vg::SnarlManager::SnarlRecord, vg::StreamIndexBase, vg::subcommand::GroupedOptionGroup, vg::subpath_t, vg::VcfBuffer, vg::VectorView< Item >, vg::VG, vg::Watchdog, vg::WindowedVcfBuffer, vg::XdropAligner, xg::XG, xg::XGPath
- operator==() : handlegraph::PathForEachSocket::iterator, vg::algorithms::TracedScore, vg::alignment_index_t, vg::BitString, vg::ChainIterator, vg::edit_t, vg::GaplessExtension, vg::IncrementIter, vg::io::MessageIterator, vg::io::ProtobufIterator< T >, vg::NodeSide, vg::NodeTraversal, vg::path_mapping_t, vg::path_t, vg::PhasedGenome::iterator, vg::position_t, vg::read_alignment_index_t, vg::ShuffledPairs::iterator, vg::VectorView< Item >::const_iterator
- operator>() : vg::algorithms::TracedScore
- operator[]() : haplo::gbwt_thread_t, vg::VectorView< Item >, vg::VectorViewInverse
- operator|=() : vg::SmallBitset
- optimal_score_on_genome() : vg::PhasedGenome
- optimize() : handlegraph::MutableHandleGraph, vg::VG
- Option() : vg::Option< Value, Parser >, vg::Option< vector< Item >, Parser >
- OptionGroup() : vg::subcommand::OptionGroup< Receiver >
- order_of() : vg::IncrementalSubgraph
- OrderedGraph() : vg::DozeuInterface::OrderedGraph
- orientation_from_old_edge_type() : xg::XG
- oriented_distance() : vg::OrientedDistanceMeasurer, vg::PathOrientedDistanceMeasurer, vg::SnarlOrientedDistanceMeasurer
- oriented_motif() : vg::SpliceStats
- OrientedDistanceClusterer() : vg::OrientedDistanceClusterer
- output_filepath() : vg::IndexingPlan
- output_wabbit_map() : Vectorizer
- over_directed_edge() : vg::Paths
- over_edge() : vg::Paths
- overflow() : vg::io::fdoutbuf
- overlap() : vg::BREAKPOINT, vg::GaplessExtension
- overlay() : vg::Translator
- overlay_node_translations() : vg::VG