Here is a list of all variables with links to the classes they belong to:
- f -
- failed_filter : vg::Funnel::Item
- failed_statistic : vg::Funnel::Item
- failing : vg::Funnel::FilterPerformance
- failing_correct : vg::Funnel::FilterPerformance
- fanout_length_threshold : vg::BaseMapper
- fast_reseed : vg::BaseMapper
- fast_reseed_length_diff : vg::BaseMapper
- fasta_to_vcf_renames : vg::NameMapper
- fd : vg::io::fdinbuf, vg::io::fdoutbuf
- feature_name : vg::FeatureSet::Feature
- feature_type : vg::Transcriptome
- features : vg::FeatureSet, vg::SmallSnarlSimplifier
- file : vg::VcfBuffer
- file_i : GafFile
- file_name : vg::algorithms::GFAFormatError
- filename : job_type, vg::GBWTHandler
- filenames : vg::IndexFile, vg::temp_file::Handler, vg::VGset, xg::temp_file::Handler
- filter_matches : vg::Filter
- filter_on_all : vg::ReadFilter< Read >
- filter_short_mems : vg::BaseMapper
- first : vg::FeatureSet::Feature
- fixed_fragment_model : vg::FragmentLengthStatistics
- flank_range : vg::VariantAdder
- flat : vg::Constructor
- flat_node : haplo::haplo_DP_rectangle
- flush : hFILE_backend
- force_haplotype_count : vg::MultipathMapper
- force_phasing : vg::HaplotypeIndexer
- force_unequal : handlegraph::PathForEachSocket::iterator
- forks : vg::algorithms::kmer_t, vg::algorithms::walk_t
- FORMAT : handlegraph::PathMetadata
- format : vg::HTSWriter, vg::MultipathAlignmentEmitter
- forward : vg::Support
- forward_graph : vg::ReverseGraph
- forward_multiplier : vg::GreedyMinDistanceClusterer
- forward_only : vg::Sampler
- frac_score : vg::ReadFilter< Read >
- frag_stats : vg::Mapper
- fragl_supports : vg::BREAKPOINT
- fragment : vg::Alignment, vg::alignment_index_t, vg::MaximalExactMatch, vg::read_alignment_index_t, vg::RecombinatorHaplotype, vg::SnarlDistanceIndexClusterer::Cluster
- fragment_best_left : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- fragment_best_right : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- fragment_directions : vg::FragmentLengthStatistics
- fragment_distance_limit : vg::SnarlDistanceIndexClusterer::ClusteringProblem
- fragment_length_cache_size : vg::FragmentLengthStatistics
- fragment_length_distr : vg::MinimizerMapper, vg::PairedEndMapper
- fragment_length_distribution : vg::Alignment
- fragment_length_warning_factor : vg::MultipathMapper
- fragment_lengths : vg::FragmentLengthStatistics
- fragment_max : vg::FragmentLengthStatistics
- fragment_mean : vg::NGSSimulator
- fragment_model_update_interval : vg::FragmentLengthStatistics
- fragment_next : vg::Alignment
- fragment_orientations : vg::FragmentLengthStatistics
- fragment_prev : vg::Alignment
- fragment_score : vg::Alignment
- fragment_sd : vg::NGSSimulator
- fragment_sigma : vg::FragmentLengthStatistics
- fragment_size : vg::FragmentLengthStatistics
- fragment_union_find : vg::SnarlDistanceIndexClusterer::ClusteringProblem
- fragments : vg::Recombinator::Statistics
- frequency : vg::MCMCGenotyper
- from : vg::Edge, vg::Translation, vg::WFATree
- from_length : vg::Edit
- from_node_id : vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
- from_start : vg::Edge
- frontier : vg::IncrementalSubgraph
- frontier_copy_limit : vg::IncrementalSubgraph
- frontier_count : vg::IncrementalSubgraph
- frontier_index : vg::IncrementalSubgraph
- full_haplotypes : vg::Recombinator::Statistics
- full_length_bonus : ScoringOptions, vg::GSSWAligner
- funnel_name : vg::Funnel