Here is a list of all namespace members with links to the namespace documentation for each member:
- s -
- sa_to_da() : vg
- sam_flag() : vg
- sample_gam_depth() : vg::algorithms
- sample_mapping_depth() : vg::algorithms
- save_function_t : vg::io
- save_gbwt() : vg
- save_gbwtgraph() : vg
- save_gbz() : vg
- save_gcsa() : vg
- save_handle_graph() : vg::io
- save_lcp() : vg
- save_minimizer() : vg
- save_r_index() : vg
- score_best_chain() : vg::algorithms
- score_gap() : vg
- search_multipath_alignment() : vg
- select_diploid() : vg
- select_haplotypes() : vg
- SerializableHandleGraph : vg
- set_annotation() : vg
- set_crash_context() : vg
- set_dir() : vg::temp_file, xg::temp_file
- set_intersection() : vg
- set_score() : vg
- set_system_dir() : vg::temp_file
- sha1head() : vg
- sha1sum() : vg
- shortest_cycle_length() : vg::algorithms
- shortest_cycle_length_internal() : vg::algorithms
- signature() : vg
- simple_components() : handlegraph::algorithms
- simple_offsets_in_paths() : vg::algorithms
- simplify() : vg
- simplify_cigar() : vg
- simplify_filtered_edits() : vg
- simplify_siblings() : vg::algorithms
- single_stranded_orientation() : handlegraph::algorithms
- size_t_is_nonzero : vg::subcommand
- slope() : vg
- SnarlType : vg
- softclip_end() : vg
- softclip_start() : vg
- softclip_trim() : vg
- sort_and_shadow() : vg::algorithms
- sort_by_id() : vg
- sort_by_id_dedup_and_clean() : vg
- sort_edges_by_id() : vg
- sort_nodes_by_id() : vg
- sort_pair_by_second() : vg
- sort_path_offsets() : vg::algorithms
- sort_permutation() : vg
- sort_shuffling_ties() : vg
- sort_transcript_paths_by_name() : vg
- sorted_id_ranges() : vg::algorithms
- split_delims() : vg
- split_ext() : vg
- split_splice_segment() : vg
- split_strands() : handlegraph::algorithms
- stack_permutations() : vg
- stacktrace_manually() : vg
- start_backward() : vg
- starts_with() : vg
- stdev() : vg
- step_handle_t : vg::io, vg
- stored_crash_context : vg
- StreamCompressString() : zstdutil
- StreamDecompressString() : zstdutil
- string_quality_char_to_short() : vg::io
- string_quality_short_to_char() : vg::io
- string_to_int() : gafkluge
- strip_from_end() : vg
- strip_from_start() : vg
- strongly_connected_components() : handlegraph::algorithms
- stubbify_ref_paths() : vg
- sub_overlaps_of_first_aln() : vg
- subgraph_containing_path_snarls() : vg
- subgraph_in_distance_range() : vg
- subgraph_in_distance_range_walk_across_chain() : vg
- subgraph_in_distance_range_walk_graph() : vg
- subpath_topological_order() : vg
- subrange_t : handlegraph, vg
- subtract_log() : vg
- sum() : vg
- summary_statistics() : vg
- support_max() : vg
- support_min() : vg