vg
tools for working with variation graphs
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Here is a list of all enum values with links to the classes they belong to:
- a -
absent :
vg::Recombinator
Adaptive :
vg::Genotyper
after :
ReferenceInterval
annotation :
vg::Counts
- b -
BAM :
vg::MultipathAlignmentEmitter
Basic :
vg::IndexingParameters
before :
ReferenceInterval
Bool :
vg::multipath_alignment_t
build_alignments :
GBWTConfig
build_gbwtgraph :
GBWTConfig
build_gbz :
GBWTConfig
build_gfa :
GBWTConfig
build_none :
GBWTConfig
build_paths :
GBWTConfig
build_vcf :
GBWTConfig
- c -
CRAM :
vg::MultipathAlignmentEmitter
- d -
Debug :
vg::IndexingParameters
defray :
vg::Counts
defray_all :
vg::Counts
deletion :
vg::WFAAlignment
Double :
vg::multipath_alignment_t
- e -
END :
handlegraph::SnarlDecomposition
excluded_feature :
vg::Counts
Exhaustive :
vg::Genotyper
- f -
filtered :
vg::Counts
Forward :
vg::MultipathMapper
frequent :
vg::Recombinator
full_haplotype :
vg::Haplotypes::Subchain
- g -
GAF :
vg::MultipathAlignmentEmitter
GAM :
vg::MultipathAlignmentEmitter
GAMP :
vg::MultipathAlignmentEmitter
graph_gbwtgraph :
GraphHandler
graph_gbz :
GraphHandler
graph_none :
GraphHandler
graph_path :
GraphHandler
graph_source :
GraphHandler
- h -
HashGraph :
vg::IndexingParameters
heterozygous :
vg::Recombinator
- i -
incorrectly_mapped :
vg::Counts
index_compressed :
vg::GBWTHandler
index_dynamic :
vg::GBWTHandler
index_none :
vg::GBWTHandler
InsertCol :
vg::BandedGlobalAligner< IntType >
insertion :
vg::WFAAlignment
InsertRow :
vg::BandedGlobalAligner< IntType >
invalid :
haplo::linear_haplo_structure
- l -
last :
vg::Counts
- m -
Match :
vg::BandedGlobalAligner< IntType >
match :
vg::WFAAlignment
max_overhang :
vg::Counts
merge_fast :
GBWTConfig
merge_insert :
GBWTConfig
merge_none :
GBWTConfig
merge_parallel :
GBWTConfig
min_base_qual :
vg::Counts
min_end_matches :
vg::Counts
min_mapq :
vg::Counts
min_score :
vg::Counts
min_sec_score :
vg::Counts
mismatch :
vg::WFAAlignment
mode_classify :
HaplotypesConfig
mode_extract :
HaplotypesConfig
mode_invalid :
HaplotypesConfig
mode_map_variants :
HaplotypesConfig
mode_preprocess :
HaplotypesConfig
mode_sample_graph :
HaplotypesConfig
mode_sample_haplotypes :
HaplotypesConfig
- n -
NODE_MISSING :
vg::AlignmentValidity
NODE_TOO_SHORT :
vg::AlignmentValidity
None :
vg::IndexingParameters
normal :
vg::Haplotypes::Subchain
Null :
vg::multipath_alignment_t
- o -
OK :
vg::AlignmentValidity
overlap :
ReferenceInterval
- p -
PackedGraph :
vg::IndexingParameters
path_cover_augment :
GBWTConfig
path_cover_greedy :
GBWTConfig
path_cover_local :
GBWTConfig
path_cover_none :
GBWTConfig
prefix :
vg::Haplotypes::Subchain
present :
vg::Recombinator
preset_default :
vg::Recombinator::Parameters
preset_diploid :
vg::Recombinator::Parameters
preset_haploid :
vg::Recombinator::Parameters
proper_pair :
vg::Counts
- r -
random :
vg::Counts
read :
vg::Counts
Reads :
vg::Genotyper
RecurseAlways :
vg::GraphCaller
RecurseNever :
vg::GraphCaller
RecurseOnFail :
vg::GraphCaller
ref_span :
haplo::linear_haplo_structure
repeat :
vg::Counts
Representative :
vg::Genotyper
rescue_dozeu :
vg::MinimizerMapper
rescue_gssw :
vg::MinimizerMapper
rescue_none :
vg::MinimizerMapper
Reverse :
vg::MultipathMapper
- s -
SAM :
vg::MultipathAlignmentEmitter
SEQ_DOES_NOT_MATCH :
vg::AlignmentValidity
snv :
haplo::linear_haplo_structure
split :
vg::Counts
START :
handlegraph::SnarlDecomposition
String :
vg::multipath_alignment_t
subsequence :
vg::Counts
suffix :
vg::Haplotypes::Subchain
- t -
TIP :
handlegraph::SnarlDecomposition
- u -
Undetermined :
vg::MultipathMapper
unmapped :
vg::Counts
- v -
verbosity_basic :
vg::Haplotypes
verbosity_debug :
vg::Haplotypes
verbosity_detailed :
vg::Haplotypes
verbosity_silent :
vg::Haplotypes
VG :
vg::IndexingParameters
- w -
wrong_name :
vg::Counts
wrong_refpos :
vg::Counts
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