Here is a list of all functions with links to the classes they belong to:
- t -
- tag() : vg::Funnel
- tag_correct() : vg::Funnel
- tag_seeds() : vg::MinimizerMapper
- tail_nodes() : vg::VG
- tail_offset() : vg::GaplessExtension
- tail_position() : vg::GaplessExtension
- take() : vg::io::MessageIterator, vg::io::ProtobufIterator< T >, vg::RecombinatorHaplotype
- target_memory_usage() : vg::IndexingPlan
- target_offset() : vg::WFAPoint
- TargetValueSearch() : vg::TargetValueSearch
- Tell() : vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream
- tell_group() : vg::io::MessageIterator, vg::io::ProtobufIterator< T >
- test_splice_candidates() : vg::MultipathMapper
- tick() : vg::Range< Number >
- tick_chain() : vg::Range< Number >, vg::subcommand::TickChainLink
- TipAnchoredMaxDistance() : vg::TipAnchoredMaxDistance
- to_alignment() : vg::ReadFilter< Read >
- to_anchor() : vg::MinimizerMapper
- to_anchors() : vg::MinimizerMapper
- to_backing() : vg::ExtraNodeGraph, vg::SourceSinkOverlay
- to_big_endian() : vg::endianness< IntType >
- to_dot() : vg::Funnel, vg::IndexRegistry, vg::IntegratedSnarlFinder::MergedAdjacencyGraph, vg::MultipathAlignmentGraph, vg::VG
- to_gfa() : xg::XG
- to_graph() : vg::Paths
- to_json() : vg::Paths
- to_length() : vg::edit_t
- to_mapping() : vg::mapping_t
- to_number() : vg::BitString
- to_path() : vg::GaplessExtension, vg::MinimizerMapper, vg::WFAAlignment
- to_seed() : vg::GaplessExtender
- to_simple_reverse() : vg::FlowSort
- to_simple_reverse_orientation() : vg::FlowSort
- to_string() : ReferenceInterval, vg::BREAKPOINT, vg::Haplotypes::Subchain
- to_turtle() : vg::VG
- to_visit() : vg::NodeSide
- to_wfa_alignment() : vg::MinimizerMapper
- to_xg() : vg::VGset
- toggle_bit() : handlegraph::number_bool_packing
- top() : vg::MatchPos::PathList
- top_down_genotype() : vg::LegacyCaller
- top_level_snarls() : vg::SnarlManager
- topological_order() : vg::MEMClusterer::HitGraph
- topological_sort() : vg::MultipathAlignmentGraph
- total_node_quality() : vg::Packer
- total_supports() : vg::BREAKPOINT
- trace() : vg::DozeuInterface, vg::QualAdjXdropAligner, vg::SnarlState, vg::XdropAligner
- trace_haplotype() : vg::GenomeState
- trace_to_alignment() : vg::DeletionAligner
- traceback() : vg::AlignmentChainModel, vg::BandedGlobalAligner< IntType >::BAMatrix, vg::BandedGlobalAligner< IntType >, vg::DeletionAligner, vg::MEMChainModel
- traceback_over_edge() : vg::BandedGlobalAligner< IntType >::BAMatrix
- Transcript() : vg::Transcript
- transcript_paths() : vg::Transcriptome
- Transcriptome() : vg::Transcriptome
- TranscriptPath() : vg::TranscriptPath
- transform() : vg::VGset
- transitive_reduction() : vg::Surjector
- translate() : vg::Translator
- translate_back() : handlegraph::NamedNodeBackTranslation, vg::algorithms::GFAIDMapInfo, vg::FlatFileBackTranslation
- translate_down() : vg::PathSubgraph, vg::TreeSubgraph
- translate_node_ids() : vg::JoinedSpliceGraph
- translate_snarl_num() : vg::SnarlManager
- Translator() : vg::Translator
- trav_sequence() : vg::VG
- trav_string() : vg::VCFOutputCaller
- TraversalSupportFinder() : vg::TraversalSupportFinder
- traverse_computed_decomposition() : vg::IntegratedSnarlFinder
- traverse_decomposition() : vg::HandleGraphSnarlFinder, vg::IntegratedSnarlFinder
- traverse_edge_handle() : handlegraph::HandleGraph
- traverse_in_order() : vg::BitStringTree< Item >, vg::BitStringTree< Item >::TreeNode
- traverse_left() : vg::Paths
- traverse_right() : vg::Paths
- traverse_up() : vg::BitStringTree< Item >, vg::BitStringTree< Item >::TreeNode
- travs_from() : vg::VG
- travs_of() : vg::VG
- travs_to() : vg::VG
- Tree() : vg::Tree< T >
- TreeNode() : vg::TreeNode< T >
- TreeSubgraph() : vg::TreeSubgraph
- trim() : vg::WFATree
- trim_ambiguous_end() : vg::ReadFilter< Read >
- trim_ambiguous_ends() : vg::ReadFilter< Read >
- trim_and_check_for_empty() : vg::MultipathAlignmentGraph
- trim_hanging_indels() : vg::MultipathAlignmentGraph
- trim_to_branch_points() : vg::MultipathAlignmentGraph
- trim_to_variable() : vg::Constructor
- TriviallySerializable() : handlegraph::TriviallySerializable
- TrivialTraversalFinder() : vg::TrivialTraversalFinder
- truncate_handle() : handlegraph::DeletableHandleGraph
- truncated_normal_distribution() : vg::truncated_normal_distribution< T >
- try_load_bare() : vg::io::VPKG
- try_load_encapsulated() : vg::io::VPKG
- try_load_first() : vg::io::VPKG
- try_load_first_bare() : vg::io::VPKG
- try_load_first_encapsulated() : vg::io::VPKG
- try_load_one() : vg::io::VPKG
- TSVAlignmentEmitter() : vg::io::TSVAlignmentEmitter
- tv_path() : vg::TargetValueSearch
- tv_path_exists() : vg::TargetValueSearch
- tv_path_length() : vg::TargetValueSearch
- tv_phase2() : vg::TargetValueSearch
- TVSClusterer() : vg::TVSClusterer