Here is a list of all class members with links to the classes they belong to:
- n -
- n_bins : vg::Packer
- n_iterations : vg::MCMCGenotyper
- name : gafkluge::GafStep, vg::Alignment, vg::BenchmarkResult, vg::BREAKPOINT, vg::Funnel::Stage, vg::Locus, vg::MultipathAlignment, vg::Node, vg::Path, vg::Position, vg::Recombinator::LocalHaplotype, vg::Snarl, vg::SnarlTraversal, vg::subcommand::Subcommand, vg::Transcript, vg::VG, vg::VG::Plan, vg::Visit
- name_prefixes : vg::ReadFilter< Read >
- name_to_id : vg::algorithms::GFAIDMapInfo, vg::Paths
- nearest_offsets_in_paths() : xg::XG
- nearest_path_node() : xg::XG
- need_comma : vg::ProblemDumpExplainer
- nested_decomposition : vg::Deconstructor
- nested_support_finder : vg::NestedFlowCaller
- NestedCachedPackedTraversalSupportFinder() : vg::NestedCachedPackedTraversalSupportFinder
- NestedFlowCaller() : vg::NestedFlowCaller
- NestedTraversalFinder() : vg::NestedTraversalFinder
- net_graph_of() : vg::SnarlManager
- net_graphs : vg::GenomeState
- net_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem::SnarlTreeChild
- net_handle_to_node_problem_index : vg::SnarlDistanceIndexClusterer::ClusteringProblem
- net_node_lanes : vg::SnarlState
- NetGraph() : vg::NetGraph
- new_height() : haplo::hDP_gbwt_graph_accessor< GBWTType >
- new_length() : haplo::hDP_gbwt_graph_accessor< GBWTType >
- new_node : haplo::hDP_gbwt_graph_accessor< GBWTType >
- new_side() : haplo::hDP_gbwt_graph_accessor< GBWTType >
- next : vg::Connection, vg::connection_t
- Next() : vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream
- next : vg::PathBranch, vg::PhasedGenome::HaplotypeNode, vg::Subpath, vg::subpath_t, vg::WFATree, vg::WindowedVcfBuffer
- next_char : vg::kmer_t
- next_chars : vg::KmerPosition
- next_cost : vg::AlignmentChainModelVertex, vg::MEMChainModelVertex
- next_empty_alignment() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
- next_explanation_number : vg::Explainer
- next_group : vg::IndexedVG::CacheEntry
- next_is_empty() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
- next_path_position() : xg::XG
- next_pos : vg::kmer_t
- next_pos_chars() : vg::Sampler
- next_positions : vg::KmerPosition
- next_score() : vg::WFATree
- next_size() : vg::subpath_t
- next_snarl() : vg::SnarlManager
- next_traceback_alignment() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
- NGSSimulator() : vg::NGSSimulator
- no_chain_info() : vg::MinimizerMapper
- no_clustering : vg::MultipathMapper
- NO_CODE : vg::MIPayload
- NO_END_POSITION : handlegraph::PathMetadata
- NO_HAPLOTYPE : handlegraph::PathMetadata
- NO_LOCUS_NAME : handlegraph::PathMetadata
- no_Ns : vg::Sampler
- NO_PHASE_BLOCK : handlegraph::PathMetadata
- no_pos() : vg::WFATree
- NO_SAMPLE_NAME : handlegraph::PathMetadata
- no_splice_log_odds : vg::MultipathMapper
- no_splice_natural_log_odds : vg::MultipathMapper
- NO_SUBRANGE : handlegraph::PathMetadata
- NO_VALUE : vg::MIPayload
- node : vg::BandedGlobalAligner< IntType >::BAMatrix, vg::CactusSide, vg::Graph, vg::MatchPos, vg::NodeSide, vg::NodeTraversal
- Node : vg::Tree< T >
- node() : xg::XGPath
- node_at_vector_offset() : handlegraph::VectorizableHandleGraph, xg::XG
- node_by_id : vg::VG
- node_cache : vg::Sampler
- node_count : vg::DagifiedGraph, vg::VG, xg::XG
- node_count_next() : vg::VG
- node_count_prev() : vg::VG
- node_graph_idx() : xg::XG
- node_id : vg::KmerMatch, vg::LocationSupport, vg::mapping_t, vg::NodePileup, vg::Position, vg::position_t, vg::Visit
- node_id_to_idx : vg::BandedGlobalAligner< IntType >
- node_ids : vg::ContractingGraph, vg::SparseUnionFind
- node_index : vg::DozeuInterface::graph_pos_s, vg::Packer, vg::VG
- node_length() : vg::MIPayload, vg::MIPayloadValues, vg::PathIndex, vg::Sampler, vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem, vg::SourceSinkOverlay
- NODE_LENGTH_MASK : vg::MIPayload
- NODE_LENGTH_OFFSET : vg::MIPayload
- NODE_LENGTH_WIDTH : vg::MIPayload
- node_lengths : haplo::gbwt_thread_t
- node_listeners : vg::algorithms::GFAParser
- node_locations : vg::PhasedGenome
- node_mapping : vg::Paths
- node_mappings : vg::BandedGlobalAligner< IntType >::BABuilder
- NODE_MISSING : vg::AlignmentValidity
- node_occurrences : vg::PathIndex
- node_offset : vg::MatchPos, vg::Viz, vg::WFAAlignment, vg::WFAPoint
- node_path_traversal_counts() : vg::Paths
- node_path_traversals() : vg::Paths
- node_pileups : vg::Pileup
- node_qual_bin_size : vg::Packer
- node_quality_bin_offset() : vg::Packer
- node_quality_bin_size() : vg::Packer
- node_quality_civ : vg::Packer
- node_quality_dynamic : vg::Packer
- node_quality_locks : vg::Packer
- node_quality_vector_size() : vg::Packer
- node_rank() : vg::VG
- NODE_RECORD_MASK : vg::MIPayload
- NODE_RECORD_OFFSET : vg::MIPayload
- node_record_offset() : vg::MIPayload, vg::MIPayloadValues
- NODE_RECORD_OFFSET_MASK : vg::MIPayload
- NODE_RECORD_OFFSET_OFFSET : vg::MIPayload
- NODE_RECORD_OFFSET_WIDTH : vg::MIPayload
- NODE_RECORD_WIDTH : vg::MIPayload
- node_sequence : vg::WFANode
- node_start_at_path_position() : xg::XG
- node_starts_in_path() : vg::VG
- node_subset : vg::SubgraphOverlay
- node_supports : vg::SupportAugmentedGraph
- node_to_position : vg::Filter
- node_to_segment_and_offsets : vg::FlatFileBackTranslation
- node_to_snarl() : vg::SnarlGraph
- node_to_variant : vg::VCFTraversalFinder
- NODE_TOO_SHORT : vg::AlignmentValidity
- node_traversal : vg::PhasedGenome::HaplotypeNode
- node_vector_offset() : handlegraph::VectorizableHandleGraph, xg::XG
- node_weight_callback : vg::FlowTraversalFinder
- nodelength() : haplo::gbwt_thread_t
- nodes : haplo::gbwt_thread_t, vg::algorithms::Graph, vg::DiagramExplainer, vg::FlowSort::Growth, vg::MaximalExactMatch, vg::MEMClusterer::DPScoreComparator, vg::MEMClusterer::HitGraph, vg::WFATree
- nodes_before_offset() : vg::Viz
- nodes_next() : vg::VG
- nodes_prev() : vg::VG
- NodeSide() : vg::NodeSide
- NodeTraversal() : vg::NodeTraversal
- nodeType : haplo::linear_haplo_structure
- non_intermediate_aliases() : vg::AliasGraph
- nonce : vg::Sampler
- nondisjoint() : haplo::int_itvl_t
- None : vg::IndexingParameters
- nonoverlapping_node_context_without_paths() : vg::VG
- normal : vg::Haplotypes::Subchain
- normal_aligners : vg::Genotyper
- normal_distribution() : vg::normal_distribution< T >
- normal_supports : vg::BREAKPOINT
- nowhere() : vg::algorithms::TracedScore
- np_bv : xg::XG
- np_bv_select : xg::XG
- np_iv : xg::XG
- nr_iv : xg::XG
- nt_table : vg::DinucleotideMachine, vg::GSSWAligner
- nth_copy_of_handle() : vg::DagifiedGraph
- Null : vg::multipath_alignment_t
- NullClusterer() : vg::NullClusterer
- NullMaskingGraph() : vg::NullMaskingGraph
- num_alt_alns : vg::MultipathMapper
- num_bases : vg::BasePileup
- num_bases_dynamic : vg::Packer
- num_bp_per_min : vg::MinimizerMapper
- NUM_CANDIDATES : vg::Recombinator
- num_edges_dynamic : vg::Packer
- num_forward_reads : vg::EdgePileup
- num_haplotypes() : vg::PhasedGenome
- NUM_HAPLOTYPES : vg::Recombinator
- num_haplotypes : vg::Recombinator::Parameters
- NUM_INLINE : vg::MatchPos::PathList
- num_items : vg::ShuffledPairs
- num_jobs : vg::RebuildParameters
- num_left_handles : vg::JoinedSpliceGraph
- num_mapping_attempts : vg::MultipathMapper
- num_nodes_dynamic : vg::Packer
- num_null_nodes : vg::DozeuPinningOverlay, vg::NullMaskingGraph
- num_pairs : vg::ShuffledPairs
- num_paths : GBWTConfig
- num_paths_set : GBWTConfig
- num_reads : vg::EdgePileup
- num_snarls() : vg::SnarlManager
- num_threads : vg::Transcriptome
- number_of_values : vg::SummaryStatistics
- numeric_mode : vg::algorithms::GFAIDMapInfo
- nx_iv : xg::XG