vg
tools for working with variation graphs
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Namespaces | Functions
pad_band.hpp File Reference
#include "../handle.hpp"
#include <vg/vg.pb.h>
#include <limits>

Namespaces

namespace  vg
 
namespace  vg::algorithms
 

Functions

std::function< size_t(const Alignment &, const HandleGraph &)> vg::algorithms::pad_band_random_walk (double band_padding_multiplier, size_t band_padding_memo_size, size_t max_padding)
 
std::function< size_t(const Alignment &, const HandleGraph &)> vg::algorithms::pad_band_min_random_walk (double band_padding_multiplier, size_t band_padding_memo_size, size_t max_padding)
 
std::function< size_t(const Alignment &, const HandleGraph &)> vg::algorithms::pad_band_constant (size_t band_padding)
 Get a band padding function that uses a constant value.
 

Detailed Description

Defines algorithm for computing band padding for banded alignment.