vg
tools for working with variation graphs
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Namespaces | Functions
alignment_emitter.cpp File Reference
#include "vg/io/alignment_emitter.hpp"
#include "vg/io/alignment_io.hpp"
#include "vg/io/json2pb.h"
#include "vg/io/hfile_cppstream.hpp"
#include "vg/io/stream.hpp"
#include <omp.h>
#include <sstream>

Namespaces

namespace  vg
 
namespace  vg::io
 

Functions

unique_ptr< AlignmentEmittervg::io::get_non_hts_alignment_emitter (const string &filename, const string &format, const map< string, int64_t > &path_length, size_t max_threads, const HandleGraph *graph, const handlegraph::NamedNodeBackTranslation *translate_through)
 

Detailed Description

Implements a system for emitting alignments and groups of alignments in multiple formats.