vg
tools for working with variation graphs
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src
algorithms
algorithms Directory Reference
Files
a_star.hpp
alignment_path_offsets.cpp
alignment_path_offsets.hpp
approx_path_distance.cpp
approx_path_distance.hpp
back_translate.cpp
back_translate.hpp
chain_items.cpp
chain_items.hpp
component.cpp
component.hpp
count_covered.hpp
coverage_depth.cpp
coverage_depth.hpp
dfs.cpp
dfs.hpp
disjoint_components.cpp
disjoint_components.hpp
distance_to_head.cpp
distance_to_head.hpp
distance_to_tail.cpp
distance_to_tail.hpp
expand_context.cpp
expand_context.hpp
extract_connecting_graph.cpp
extract_connecting_graph.hpp
extract_containing_graph.cpp
extract_containing_graph.hpp
extract_extending_graph.cpp
extract_extending_graph.hpp
find_gbwt.cpp
find_gbwt.hpp
find_gbwtgraph.cpp
find_gbwtgraph.hpp
find_translation.cpp
find_translation.hpp
gfa_to_handle.cpp
gfa_to_handle.hpp
id_sort.cpp
id_sort.hpp
intersect_path_offsets.cpp
intersect_path_offsets.hpp
jump_along_path.cpp
jump_along_path.hpp
k_widest_paths.cpp
k_widest_paths.hpp
kmer.cpp
kmer.hpp
locally_expand_graph.cpp
locally_expand_graph.hpp
merge.cpp
merge.hpp
min_cut_graph.cpp
min_cut_graph.hpp
nearest_offsets_in_paths.cpp
nearest_offsets_in_paths.hpp
next_pos_chars.cpp
next_pos_chars.hpp
normalize.cpp
normalize.hpp
pad_band.cpp
pad_band.hpp
path_string.cpp
path_string.hpp
prune.cpp
prune.hpp
prune_to_connecting_graph.cpp
prune_to_connecting_graph.hpp
ref_path_distance.cpp
ref_path_distance.hpp
shortest_cycle.cpp
shortest_cycle.hpp
simplify_siblings.cpp
simplify_siblings.hpp
sorted_id_ranges.cpp
sorted_id_ranges.hpp
subgraph.cpp
subgraph.hpp
three_edge_connected_components.cpp
three_edge_connected_components.hpp
walk.cpp
walk.hpp
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