Here is a list of all class members with links to the classes they belong to:
- w -
- w : HaplotypesConfig
- wabbit_map : Vectorizer
- wabbitize() : Vectorizer
- wait_for_region : vg::GraphSynchronizer
- walk_backwards() : vg::NGSSimulator
- walk_backwards_along_alignment() : vg::NGSSimulator
- walk_fanout_path() : vg::BaseMapper
- walk_listeners : vg::algorithms::GFAParser
- walk_t() : vg::algorithms::walk_t
- want_breakpoint() : vg::io::StreamMultiplexer
- warn_on_ambiguous : vg::Constructor
- warn_on_lowercase : vg::Constructor
- warn_on_missing_variants : vg::HaplotypeIndexer
- warned_about_bad_distribution : vg::MinimizerMapper
- warned_about_chunking : vg::Mapper
- warned_about_rescue_size : vg::MinimizerMapper
- warned_about_rewrites : vg::VG
- warned_about_subgraph_size : vg::Surjector
- warned_about_tail_size : vg::MinimizerMapper
- was_correct() : vg::Funnel
- was_provided_directly() : vg::IndexFile
- was_set() : vg::subcommand::ArgSpec< T, Receiver >, vg::subcommand::ValueArgSpec< T, Receiver, Holder >
- Watchdog() : vg::Watchdog
- watchdog_timeout : GiraffeMainOptions
- watcher : vg::Watchdog
- watcher_loop() : vg::Watchdog
- wavefronts : vg::WFANode
- weight : vg::algorithms::Edge, vg::algorithms::Node, vg::AlignmentChainModelVertex, vg::MEMChainModelVertex, vg::MEMClusterer::HitEdge
- wfa_alignment_to_alignment() : vg::MinimizerMapper
- WFAExtender() : vg::WFAExtender
- WFANode() : vg::WFANode
- WFATree() : vg::WFATree
- what() : j2pb_error, vg::algorithms::GFAFormatError, vg::InsufficientInputException, vg::NoAlignmentInBandException, vg::RewindPlanException, vg::SizeLimitExceededException
- which_haplotype() : vg::PhasedGenome::iterator
- whole_alignment_cutoff : vg::VariantAdder
- whole_graph_lock : vg::GraphSynchronizer
- WideningPRNG() : vg::WideningPRNG< PRNG, OutType >
- window_breaking_quality() : vg::MinimizerMapper
- window_length : vg::Filter
- window_of_id() : vg::StreamIndexBase
- WINDOW_SHIFT : vg::StreamIndexBase
- window_size() : vg::MinimizerMapper::Minimizer, vg::WindowedVcfBuffer
- window_t : vg::StreamIndexBase
- window_to_start : vg::StreamIndexBase
- WindowedVcfBuffer() : vg::WindowedVcfBuffer
- with_cache_entry() : vg::IndexedVG
- with_cursor() : vg::IndexedVG
- with_dagified_local_graph() : vg::MinimizerMapper
- with_path_index() : vg::GraphSynchronizer
- with_putback() : vg::io::VPKG
- with_save_stream() : vg::io::VPKG
- with_vector() : vg::VectorView< Item >
- without_read() : vg::alignment_index_t
- work_dir : vg::IndexRegistry
- wrap() : handlegraph::BoolReturningWrapper< Iteratee, false >, handlegraph::BoolReturningWrapper< Iteratee, true >
- wrap_with_null_nodes() : vg::VG
- wrapped_ostream : vg::io::BlockedGzipOutputStream
- write : hFILE_backend, vg::io::JSONStreamHelper< T >, vg::io::MessageEmitter, vg::io::ProtobufEmitter< T >, vg::Paths
- write_annotations() : vg::DiagramExplainer
- write_connected_components() : vg::DiagramExplainer
- write_copy() : vg::io::MessageEmitter, vg::io::ProtobufEmitter< T >
- write_edge() : vg::DiagramExplainer
- write_edits() : vg::Packer
- write_gcsa_kmers_ascii() : vg::VGset
- write_gcsa_kmers_binary() : vg::VGset
- write_globals() : vg::DiagramExplainer
- write_graph() : vg::Transcriptome
- write_many() : vg::io::ProtobufEmitter< T >
- write_mapping() : vg::PhaseUnfolder
- write_node() : vg::DiagramExplainer
- write_output : vg::ReadFilter< Read >
- write_supports() : vg::SupportAugmentedGraph
- write_transcript_info() : vg::Transcriptome
- write_transcript_sequences() : vg::Transcriptome
- write_translations() : vg::AugmentedGraph
- write_tsv : vg::ReadFilter< Read >
- write_variant() : vg::Genotyper
- write_variants() : vg::VCFOutputCaller
- write_vcf_header() : vg::Genotyper
- WriteAliasedRaw() : vg::io::BlockedGzipOutputStream
- writer_stop : vg::io::StreamMultiplexer
- writer_thread : vg::io::StreamMultiplexer
- writer_thread_function() : vg::io::StreamMultiplexer
- wrong_name : vg::Counts
- wrong_refpos : vg::Counts