Here is a list of all variables with links to the classes they belong to:
- i -
- id : ReferenceInterval, vg::Node, vg::RecombinatorHaplotype
- id_interval : vg::HaplotypeIndexer
- id_rank_map : vg::Viz
- id_to_edge_indices : vg::IndexedVG::CacheEntry
- id_to_index : vg::subcommand::OptionGroup< Receiver >
- id_to_name : vg::algorithms::GFAIDMapInfo, vg::Paths
- id_to_node_index : vg::IndexedVG::CacheEntry
- id_to_rank : Vectorizer
- identifier : vg::IndexFile
- identity : vg::Alignment
- identity_weight : vg::Mapper
- ignore_missing_contigs : vg::VariantAdder
- image_height : vg::Viz
- image_width : vg::Viz
- imperfect_pairs_to_retry : vg::Mapper
- in : vg::GFFReader
- in_from : vg::ExtraNodeGraph
- in_use : GraphHandler, vg::GBWTHandler
- include_children : vg::SparseUnionFind
- include_endpoints : vg::VCFTraversalFinder
- include_full_length_bonuses : vg::Mapper
- include_named_paths : GBWTConfig
- include_nested : vg::VCFOutputCaller
- include_reference : vg::Recombinator::Parameters
- include_reversing_traversals : vg::ExhaustiveTraversalFinder
- indel_error_prop : vg::NGSSimulator
- indel_poly_rate : vg::NGSSimulator
- index : haplo::GBWTScoreProvider< GBWTType >, haplo::linear_haplo_structure, haplo::LinearScoreProvider, vg::IndexedVG
- index_of : vg::DozeuInterface::OrderedGraph
- index_registry : vg::IndexRegistry
- indexes : vg::GraphSynchronizer, vg::RewindPlanException, vg::VectorView< Item >
- initial_lookback_threshold : vg::MinimizerMapper
- inline_items : vg::MatchPos::PathList
- inner_value : haplo::haplo_DP_rectangle
- input : vg::io::hFILE_cppstream
- input_filenames : GBWTConfig
- input_in_progress : vg::Funnel
- input_vcf : vg::VCFGenotyper
- inputs : vg::IndexRecipe, vg::InsufficientInputException
- inputs_as_jobs : GBWTConfig
- insert_col : vg::BandedGlobalAligner< IntType >::BAMatrix
- insert_mean : vg::Filter
- insert_row : vg::BandedGlobalAligner< IntType >::BAMatrix
- insert_sd : vg::Filter
- insertion_bias_large : vg::PoissonSupportSnarlCaller
- insertion_bias_small : vg::PoissonSupportSnarlCaller
- insertion_threshold : vg::PoissonSupportSnarlCaller
- insertions : vg::InsertHaplotypeCommand, vg::ReplaceLocalHaplotypeCommand
- INSERTIONS : vg::WFANode
- int_is_inc : haplo::haplo_DP_rectangle
- interleaved : vg::ReadFilter< Read >
- internal_id_map : vg::algorithms::GFAParser
- internal_score : vg::GaplessExtension
- inverse : vg::Filter, vg::VectorViewInverse
- is_alt : vg::Paths
- is_checked_in : vg::Watchdog::thread_state_t
- is_circular : vg::Path, xg::XGPath
- is_compacted : vg::Packer
- is_end : vg::CactusSide, vg::NodeSide
- is_fixed : vg::FragmentLengthDistribution
- is_haplotype : vg::TranscriptPath
- is_interval : gafkluge::GafStep
- is_looping_chain : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- is_phased : vg::Genotype
- is_reference : vg::TranscriptPath
- is_rend : vg::ChainIterator
- is_reverse : gafkluge::GafStep, vg::Genotyper::Affinity, vg::Position, vg::Transcript
- is_reversed : vg::MIPayloadValues
- is_reversed_in_parent : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- IS_REVERSED_OFFSET : vg::MIPayload
- is_secondary : vg::Alignment
- is_seed : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem::SnarlTreeChild
- is_stable : gafkluge::GafStep
- is_trivial_chain : vg::MIPayloadValues, vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- IS_TRIVIAL_CHAIN_OFFSET : vg::MIPayload
- is_vg : vg::LegacyCaller
- isForward : vg::BREAKPOINT
- item_bonus : vg::MinimizerMapper
- item_count : vg::MatchPos::PathList
- item_vo : vg::io::MessageIterator
- items : vg::Funnel::Stage, vg::VectorView< Item >
- iteratee : vg::ShuffledPairs::iterator