Here is a list of all namespace members with links to the namespace documentation for each member:
- c -
- cactus_to_vg() : vg
- cactusify() : vg
- canonical_orientation() : vg
- Chain : vg
- chain_begin() : vg
- chain_begin_from() : vg
- chain_end() : vg
- chain_end_from() : vg
- chain_items_dp() : vg::algorithms
- chain_items_traceback() : vg::algorithms
- chain_rbegin() : vg
- chain_rcbegin() : vg
- chain_rcend() : vg
- chain_rend() : vg
- choose_good_thread_count() : vg
- choose_ln() : vg
- chop() : handlegraph::algorithms
- cigar_against_path() : vg
- cigar_mapping() : vg
- cigar_string() : vg
- classify_kmers() : vg
- clear_alignment() : vg
- clear_annotation() : vg
- clear_crash_context() : vg
- clip_contained_low_depth_nodes_and_edges() : vg
- clip_contained_snarls() : vg
- clip_contained_stubs() : vg
- clip_deletion_edges() : vg
- clip_low_depth_nodes_and_edges() : vg
- clip_low_depth_nodes_and_edges_generic() : vg
- clip_stubs() : vg
- clip_stubs_generic() : vg
- cluster_cover() : vg
- cluster_coverage() : vg
- cluster_nodes() : vg
- cluster_subgraph_containing() : vg
- cluster_subgraph_walk() : vg
- cluster_traversals() : vg
- clusters_overlap_in_graph() : vg
- clusters_overlap_in_read() : vg
- clusters_overlap_length() : vg
- combine_handles() : handlegraph::algorithms
- combine_hashes() : std
- CommandCategory : vg::subcommand
- component_paths() : vg::algorithms
- component_paths_parallel() : vg::algorithms
- component_sizes() : vg::algorithms
- compose_short_path_name() : vg
- CompressString() : zstdutil
- compute_min_cut() : vg::algorithms
- compute_template_lengths() : vg
- concat_mappings() : vg
- concat_nodes() : handlegraph::algorithms
- concat_paths() : vg
- connected_components() : vg
- connected_comps_do() : vg
- construct_graph_from_nodes_and_edges() : vg
- contains_connection() : vg
- contains_match() : vg
- convert() : vg
- convert_alignment_char() : vg
- convert_multipath_alignment_char() : vg
- convert_Ts_to_Us() : vg
- convert_Us_to_Ts() : vg
- copy_file() : vg
- copy_handle_graph() : handlegraph::algorithms
- copy_metadata() : vg
- copy_path() : handlegraph::algorithms
- copy_path_handle_graph() : handlegraph::algorithms
- copy_reference_samples() : vg
- corresponding_from_length() : vg
- corresponding_length_internal() : vg
- corresponding_to_length() : vg
- count_covered() : vg::algorithms
- count_walks() : handlegraph::algorithms
- count_walks_through_nodes() : handlegraph::algorithms
- crash_unless_impl() : vg
- create() : vg::temp_file, xg::temp_file
- create_directory() : vg::temp_file
- create_ref_allele() : vg
- cut_edit_at_from() : vg::io
- cut_edit_at_to() : vg::io
- cut_mapping() : vg
- cut_mapping_offset() : vg
- cut_path() : vg