Here is a list of all variables with links to the classes they belong to:
- g -
- g_bv : xg::XG
- g_bv_rank : xg::XG
- g_bv_select : xg::XG
- g_iv : xg::XG
- G_NODE_HEADER_LENGTH : xg::XG
- G_NODE_ID_OFFSET : xg::XG
- G_NODE_LEFT_COUNT_OFFSET : xg::XG
- G_NODE_LENGTH_OFFSET : xg::XG
- G_NODE_RIGHT_COUNT_OFFSET : xg::XG
- G_NODE_SEQ_START_OFFSET : xg::XG
- gaf : GafFile
- gaf_output : vg::FlowCaller, vg::NestedFlowCaller, vg::VCFGenotyper
- gaf_sample_name : vg::GAFOutputCaller
- gam_format : GBWTConfig
- gap_extend : ScoringOptions, vg::WFATree
- gap_extension : vg::DeletionAligner, vg::GSSWAligner, vg::SSWAligner
- gap_length : vg::WFAExtender::ErrorModel
- gap_memo_max_size : vg::MultipathMapper
- gap_open : ScoringOptions, vg::DeletionAligner, vg::GSSWAligner, vg::SSWAligner, vg::WFATree
- gaps : vg::WFAExtender::ErrorModel
- gbwt : vg::Deconstructor, vg::GBWTTraversalFinder
- gbwt_buffer_size : vg::HaplotypeIndexer
- gbwt_graph : GraphHandler, vg::MinimizerMapper
- gbwt_index : vg::PhaseUnfolder
- gbwt_insert_batch_size : vg::IndexingParameters
- gbwt_insert_batch_size_increase_factor : vg::IndexingParameters
- gbwt_name : GBWTConfig
- gbwt_output : GBWTConfig
- gbwt_reference_samples : vg::Deconstructor
- gbwt_sample_to_phase_range : vg::Deconstructor
- gbwt_sampling_interval : vg::IndexingParameters
- gbwt_trav_finder : vg::Deconstructor
- gbwtgraph_name : GBWTConfig
- gbz : vg::GBZGraph, vg::HaplotypePartitioner, vg::Recombinator
- gbz_format : GBWTConfig
- gbz_output : HaplotypesConfig
- gc_content_estimate : vg::AlignerClient
- gcsa : vg::BaseMapper
- gcsa_doubling_steps : vg::IndexingParameters
- gcsa_ind : vg::Filter
- gcsa_initial_kmer_length : vg::IndexingParameters
- gcsa_size_limit : vg::IndexingParameters
- generalizations : vg::IndexRegistry
- genome : vg::MCMCCaller
- genotype : vg::Locus
- genotype_by_ploidy : vg::NestedFlowCaller::CallRecord
- genotype_snarls : vg::FlowCaller, vg::NestedFlowCaller
- get_edge_support : vg::RepresentativeTraversalFinder
- get_handle_memo : vg::MemoizingGraph
- get_index : vg::RepresentativeTraversalFinder
- get_node_support : vg::RepresentativeTraversalFinder
- get_rescue_graph_from_paths : vg::MultipathMapper
- get_seed : vg::LazyRNG
- gfa_id_space : vg::GFAHandleGraph
- gfa_parameters : GBWTConfig
- gff_feature_name : vg::IndexingParameters
- gff_transcript_tag : vg::IndexingParameters
- giraffe_gbwt_downsample : vg::IndexingParameters
- globals : vg::DiagramExplainer
- go_left : vg::ChainIterator
- gq : vg::PoissonSupportSnarlCaller::PoissonCallInfo
- grandparent_net_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
- graph : handlegraph::PathForEachSocket, handlegraph::PathForEachSocket::iterator, haplo::hDP_gbwt_graph_accessor< GBWTType >, haplo::linear_haplo_structure, vg::AbstractReadSampler, vg::AliasGraph, vg::AugmentedGraph, vg::BandedGlobalAligner< IntType >::AltTracebackStack, vg::BandedGlobalAligner< IntType >, vg::CactusSnarlFinder, vg::ConstructedChunk, vg::ContractingGraph, vg::DagifiedGraph, vg::Deconstructor, vg::DozeuInterface::OrderedGraph, vg::DozeuPinningOverlay, vg::ExhaustiveTraversalFinder, vg::FlowCaller, vg::FlowTraversalFinder, vg::GaplessExtender, vg::GBWTTraversalFinder, vg::GraphSynchronizer, vg::HandleGraphNodeSet, vg::HandleGraphSnarlFinder, vg::IdentityOverlay, vg::IncrementalSubgraph, vg::IntegratedSnarlFinder::MergedAdjacencyGraph, vg::io::GafAlignmentEmitter, vg::LegacyCaller, vg::MCMCGenotyper, vg::MemoizingGraph, vg::MultipathAlignmentEmitter, vg::NestedFlowCaller, vg::NetGraph, vg::NullMaskingGraph, vg::Packer, vg::PathBasedTraversalFinder, vg::PathChunker, vg::PathOrientedDistanceMeasurer, vg::PathRestrictedTraversalFinder, vg::PathTraversalFinder, vg::RareVariantSimplifier, vg::ReadFilter< Read >, vg::RegionExpander, vg::RepresentativeTraversalFinder, vg::SmallSnarlSimplifier, vg::SnarlDistanceIndexClusterer, vg::SnarlState, vg::SplicedHTSAlignmentEmitter, vg::StrandSplitGraph, vg::SupportBasedSnarlCaller, vg::Surjector, vg::TraversalSupportFinder, vg::TrivialTraversalFinder, vg::VariantAdder, vg::VCFGenotyper, vg::VCFTraversalFinder, vg::VG, vg::VG::Plan, vg::WFAExtender, vg::WFATree
- graph_name : GBWTConfig, HaplotypesConfig
- graph_output : GBWTConfig
- greedy_min_dist : vg::MultipathMapper
- greedy_pieces : vg::Constructor
- greedy_restart_assume_substitution : vg::BaseMapper
- greedy_restart_max_count : vg::BaseMapper
- greedy_restart_max_lcp : vg::BaseMapper
- greedy_restart_min_length : vg::BaseMapper
- group : vg::io::MessageEmitter
- group_cache : vg::IndexedVG
- group_count : vg::io::MessageIterator
- group_handlers : vg::io::MessageEmitter, vg::io::ProtobufEmitter< T >
- group_idx : vg::io::MessageIterator
- group_size : vg::Funnel::Item
- group_tag : vg::io::MessageEmitter
- group_vo : vg::io::MessageIterator