Here is a list of all class members with links to the classes they belong to:
- b -
- b() : vg::uniform_int_distribution< T >, vg::uniform_real_distribution< T >
- BABuilder() : vg::BandedGlobalAligner< IntType >::BABuilder, vg::BandedGlobalAligner< IntType >::BAMatrix
- back() : haplo::gbwt_thread_t
- back_translate_alignments_in_place() : vg::BackTranslatingAlignmentEmitter
- backbone : vg::FlowSort::Growth
- backed_up : vg::io::BlockedGzipOutputStream
- background_sampler : vg::NGSSimulator
- backing : vg::BackTranslatingAlignmentEmitter, vg::ExtraNodeGraph, vg::SourceSinkOverlay, vg::SurjectingAlignmentEmitter
- backing_files : vg::HTSWriter
- backing_graph : vg::GenomeState, vg::SnarlGraph, vg::SubgraphOverlay, vg::SubpathOverlay
- backing_heads : vg::SourceSinkOverlay
- backing_index() : vg::VectorView< Item >
- backing_path_graph : vg::PathSubgraphOverlay
- backing_stream : vg::io::StreamMultiplexer
- backing_tails : vg::SourceSinkOverlay
- BackTranslatingAlignmentEmitter() : vg::BackTranslatingAlignmentEmitter
- BackUp() : vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream
- backward : vg::KmerMatch, vg::NodeTraversal, vg::Visit
- bad_mapping_index : vg::AlignmentValidity
- BAM : vg::MultipathAlignmentEmitter
- BAMatrix() : vg::BandedGlobalAligner< IntType >::BAMatrix
- band_begin : vg::AlignmentChainModelVertex
- band_idx : vg::AlignmentChainModelVertex
- band_multimaps : vg::Mapper
- banded_matrices : vg::BandedGlobalAligner< IntType >
- BandedGlobalAligner : vg::BandedGlobalAligner< IntType >::BAMatrix, vg::BandedGlobalAligner< IntType >
- base : vg::io::hFILE_cppstream, vg::WideningPRNG< PRNG, OutType >
- base_edge() : vg::AugmentedGraph
- base_graph : vg::AugmentedGraph
- base_locks : vg::Packer
- base_pileup : vg::NodePileup
- BaseArgSpec() : vg::subcommand::BaseArgSpec< Receiver >
- baseline_error_large : vg::PoissonSupportSnarlCaller
- baseline_error_small : vg::PoissonSupportSnarlCaller
- BaseMapper() : vg::BaseMapper
- BaseOption() : vg::BaseOption< Value, Parser >
- bases : vg::BasePileup
- bases_per_chunk : vg::Constructor
- BaseValuation() : vg::subcommand::BaseValuation
- Basic : vg::IndexingParameters
- batch_file_prefix : vg::HaplotypeIndexer
- batch_size : vg::RebuildParameters
- before : ReferenceInterval
- begin() : handlegraph::PathForEachSocket, vg::algorithms::kmer_t, vg::algorithms::walk_t, vg::kmer_t, vg::MaximalExactMatch, vg::Option< vector< Item >, Parser >, vg::PathIndex, vg::PathNode, vg::PhasedGenome, vg::ShuffledPairs, vg::VectorView< Item >
- bfs() : vg::FlowSort
- bfs_left() : vg::RepresentativeTraversalFinder
- bfs_right() : vg::RepresentativeTraversalFinder
- BGZF_FOOTER_LENGTH : vg::HTSWriter
- bgzip_in : vg::io::MessageIterator
- bgzip_out : vg::io::MessageEmitter
- bidirectional_haplo_tx_gbwt : vg::IndexingParameters
- bin_for_position() : vg::Packer
- bin_size : vg::Packer
- bin_t : vg::StreamIndexBase
- bin_to_prefix() : vg::StreamIndexBase
- bin_to_ranges : vg::StreamIndexBase
- binary_extend_intervals() : haplo::haplo_DP_column
- bins_by_id_prefix : vg::StreamIndexBase
- bit_length : vg::BitString
- bits : vg::BitString
- BitString() : vg::BitString
- block_length : gafkluge::GafRecord
- BlockedGzipInputStream() : vg::io::BlockedGzipInputStream
- BlockedGzipOutputStream() : vg::io::BlockedGzipOutputStream
- Bool : vg::multipath_alignment_t
- border : vg::PhaseUnfolder
- border_offsets : vg::Exon
- border_steps : vg::Exon
- bottom : haplo::int_itvl_t
- bottom_diag : vg::BandedGlobalAligner< IntType >::BAMatrix
- bp_length() : vg::NestedTraversalFinder, vg::RepresentativeTraversalFinder
- break_chain() : vg::GraphCaller
- break_cycles() : vg::VG
- breakend_filter() : vg::Filter
- brute_force_alt_traversals() : vg::VCFTraversalFinder
- buf : vg::io::fdistream, vg::io::fdostream, vg::io::streamistream
- buffer : vg::io::BlockedGzipOutputStream, vg::io::fdinbuf, vg::io::streaminbuf, vg::ParallelKFFReader, vg::VcfBuffer
- buffer_size : vg::ReadFilter< Read >, vg::Recombinator::Parameters
- bufSize : vg::io::fdinbuf, vg::io::streaminbuf
- build : GBWTConfig
- build_alignments : GBWTConfig
- build_edge_indexes() : vg::VG
- build_edge_indexes_no_init_size() : vg::VG
- build_gbwt() : vg::HaplotypeIndexer
- build_gbwtgraph : GBWTConfig
- build_gbz : GBWTConfig
- build_gfa : GBWTConfig
- BUILD_HOST : vg::Version
- build_indexes() : vg::SnarlManager, vg::VG
- build_indexes_no_init_size() : vg::VG
- build_indices() : vg::PhasedGenome
- build_jobs : GBWTConfig
- build_mode : GBWTConfig
- build_node_indexes() : vg::VG
- build_node_indexes_no_init_size() : vg::VG
- build_none : GBWTConfig
- build_paths : GBWTConfig
- build_position_table() : vg::Translator
- build_site_indices_internal() : vg::PhasedGenome
- build_snarl_decomposition() : handlegraph::BuildableSnarlDecomposition
- build_subchains() : vg::HaplotypePartitioner
- BUILD_USER : vg::Version
- build_vcf : GBWTConfig
- burn_in : vg::MCMCGenotyper
- by_id : vg::PathIndex
- by_start : vg::PathIndex
- byte_count : vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream
- ByteCount() : vg::io::BlockedGzipInputStream, vg::io::BlockedGzipOutputStream