deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Depends: perl:any, any2fasta, bcftools, bedtools, bwa, freebayes (>= 1.3.6-2), libbio-perl-perl,
libvcflib-tools, minimap2, parallel, samclip, samtools, seqtk, snp-sites, snpeff,
vt
Description: |-
rapid haploid variant calling and core genome alignment
Snippy finds SNPs between a haploid reference genome and your NGS
sequence reads. It will find both substitutions (snps) and
insertions/deletions (indels). It will use as many CPUs as you can give
it on a single computer (tested to 64 cores). It is designed with speed
in mind, and produces a consistent set of output files in a single
folder. It can then take a set of Snippy results using the same
reference and generate a core SNP alignment (and ultimately a
phylogenomic tree).
Homepage: https://github.com/tseemann/snippy/
Installed-Size: '100'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: snippy
Priority: optional
Section: science
Version: 4.6.0+dfsg-5
srcpkg_name: snippy
srcpkg_version: 4.6.0+dfsg-5