deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libnlopt0 (>= 2.6.1),
libssw0 (>= 1.1), libstdc++6 (>= 14), zlib1g (>= 1:1.2.3.3), python3:any, python3,
python3-joblib, python3-packaging, python3-yaml, bwa, bamtools, samtools
Description: "genome assembler for single-cell and isolates data sets\n The SPAdes\
\ \u2013 St. Petersburg genome assembler is intended for both\n standard isolates\
\ and single-cell MDA bacteria assemblies. It works\n with Illumina or IonTorrent\
\ reads and is capable of providing hybrid\n assemblies using PacBio and Sanger\
\ reads. You can also provide\n additional contigs that will be used as long reads.\n\
\ .\n This package provides the following additional pipelines:\n * metaSPAdes\
\ \u2013 a pipeline for metagenomic data sets\n * plasmidSPAdes \u2013 a pipeline\
\ for extracting and assembling plasmids\n from WGS data sets\n * metaplasmidSPAdes\
\ \u2013 a pipeline for extracting and assembling\n plasmids from metagenomic\
\ data sets\n * rnaSPAdes \u2013 a de novo transcriptome assembler from RNA-Seq\
\ data\n * truSPAdes \u2013 a module for TruSeq barcode assembly\n * biosyntheticSPAdes\
\ \u2013 a module for biosynthetic gene cluster\n assembly with paired-end\
\ reads\n .\n SPAdes provides several stand-alone binaries with relatively simple\n\
\ command-line interface: k-mer counting (spades-kmercounter), assembly\n graph\
\ construction (spades-gbuilder) and long read to graph aligner\n (spades-gmapper)."
Homepage: http://cab.spbu.ru/software/spades/
Installed-Size: '39888'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: spades
Priority: optional
Section: science
Version: 3.15.5+dfsg-8
srcpkg_name: spades
srcpkg_version: 3.15.5+dfsg-8