deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: all
Depends: med-config (= 3.8.2), med-tasks (= 3.8.2)
Description: |-
Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful
for development of applications for biological research.
Installed-Size: '33'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: med-bio-dev
Priority: optional
Recommends: bio-tradis, biobambam2, bioperl, bioperl-run, biosquid, cwltool, gffread,
goby-java, libace-perl, libai-fann-perl, libbambamc-dev, libbamtools-dev, libbigwig-dev,
libbio-alignio-stockholm-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl,
libbio-cluster-perl, libbio-coordinate-perl, libbio-das-lite-perl, libbio-db-biofetch-perl,
libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, libbio-db-seqfeature-perl,
libbio-eutilities-perl, libbio-featureio-perl, libbio-graphics-perl, libbio-mage-perl,
libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-samtools-perl, libbio-scf-perl,
libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl,
libbio-tools-run-remoteblast-perl, libbio-variation-perl, libbiojava-java, libbiojava6-java,
libbioparser-dev, libblasr-dev, libbpp-core-dev, libbpp-phyl-dev, libbpp-phyl-omics-dev,
libbpp-popgen-dev, libbpp-qt-dev, libbpp-raa-dev, libbpp-seq-dev, libbpp-seq-omics-dev,
libcdk-java, libchado-perl, libcifpp-dev, libconsensuscore-dev, libdivsufsort-dev,
libedlib-dev, libfast5-dev, libfastahack-dev, libffindex0-dev, libfml-dev, libgatbcore-dev,
libgclib-dev, libgenome-dev, libgenome-model-tools-music-perl, libgenome-perl,
libgenometools0-dev, libgff-dev, libgkarrays-dev, libgo-perl, libhdf5-dev, libhmsbeagle-dev,
libhts-dev, libhtscodecs-dev, libhtsjdk-java, libjebl2-java, libjloda-java, libkmer-dev,
libmems-dev, libminimap2-dev, libmuscle-dev, libncbi-vdb-dev, libncbi6-dev, libncl-dev,
libngs-java, libnhgri-blastall-perl, libopenmm-dev, libopenms-dev, libpal-java,
libparasail-dev, libpbbam-dev, libpbdata-dev, libpbihdf-dev, libpbseq-dev, libpdb-redo-dev,
libpll-dev, libpwiz-dev, libqes-dev, librcsb-core-wrapper0-dev, librdp-taxonomy-tree-java,
librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast0-dev, librostlab3-dev,
libsbml5-dev, libseqan2-dev, libseqan3-dev, libseqlib-dev, libslow5-dev, libsmithwaterman-dev,
libsnp-sites1-dev, libsort-key-top-perl, libspoa-dev, libsrf-dev, libssm-dev,
libssu-dev, libssw-dev, libssw-java, libstaden-read-dev, libstatgen-dev, libswiss-perl,
libtabixpp-dev, libthread-pool-dev, libvcflib-dev, libvibrant6-dev, libwfa2-dev,
libzerg-perl, libzerg0-dev, mcl, nim-hts-dev, nim-kexpr-dev, nim-lapper-dev, ont-fast5-api,
pyfai, python3-airr, python3-anndata, python3-bcbio-gff, python3-bioframe, python3-biom-format,
python3-biomaj3, python3-biopython, python3-biotools, python3-bx, python3-cgecore,
python3-cigar, python3-cobra, python3-cogent3, python3-cooler, python3-corepywrap,
python3-csb, python3-cutadapt, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals,
python3-dendropy, python3-dnaio, python3-ete3, python3-fast5, python3-freecontact,
python3-gfapy, python3-gffutils, python3-gtfparse, python3-htseq, python3-intervaltree-bio,
python3-kineticstools, python3-loompy, python3-mirtop, python3-nanoget, python3-ngs,
python3-pairix, python3-pangolearn, python3-parasail, python3-pbcommand, python3-pbconsensuscore,
python3-pbcore, python3-peptidebuilder, python3-presto, python3-propka, python3-py2bit,
python3-pyabpoa, python3-pyani, python3-pybedtools, python3-pybel, python3-pybigwig,
python3-pyfaidx, python3-pyfastx, python3-pymummer, python3-pyranges, python3-pysam,
python3-pyspoa, python3-pyvcf, python3-rdkit, python3-ruffus, python3-screed,
python3-shasta, python3-skbio, python3-slow5, python3-sqt, python3-streamz, python3-tinyalign,
python3-torch, python3-treetime, python3-unifrac, python3-wdlparse, r-bioc-biobase,
r-cran-boolnet, r-cran-corrplot, r-cran-distory, r-cran-fitdistrplus, r-cran-forecast,
r-cran-genetics, r-cran-gprofiler2, r-cran-haplo.stats, r-cran-phangorn, r-cran-pheatmap,
r-cran-phylobase, r-cran-pscbs, r-cran-qqman, r-cran-rentrez, r-cran-rncl, r-cran-rnexml,
r-cran-rotl, r-cran-samr, r-cran-sctransform, r-cran-seqinr, r-cran-seurat, r-cran-tsne,
r-cran-vegan, r-cran-webgestaltr, ruby-bio, ruby-crb-blast, sbmltoolbox, snakemake,
toil
Section: metapackages
Source: debian-med
Suggests: bioclipse, capsule-nextflow, conda-package-handling, ctdconverter, cthreadpool-dev,
cwlformat, cwltest, libargs-dev, libatomicqueue-dev, libbam-dev, libbbhash-dev,
libbifrost-dev, libbiojava4-java, libbiosoup-dev, libbtllib-dev, libcapsule-maven-nextflow-java,
libconcurrentqueue-dev, libdisorder-dev, libfast-perl, libforester-java, libfreecontact-dev,
libfreecontact-doc, libfreecontact-perl, libgatk-bwamem-java, libgatk-bwamem-jni,
libgatk-fermilite-java, libgatk-fermilite-jni, libgatk-native-bindings-java, libgenomicsdb-dev,
libgenomicsdb-java, libicb-utils-java, libmaus2-dev, libmilib-java, libminimap-dev,
libmmblib-dev, libmodhmm-dev, libnexml-java, libngs-sdk-dev, libpbcopper-dev,
libqcpp-dev, librelion-dev, libroadrunner-dev, librostlab-blast-doc, librostlab-doc,
libsavvy-dev, libsuma-dev, libsvmloc-dev, libswarm2-dev, libterraces-dev, libtfbs-perl,
libvbz-hdf-plugin-dev, libxxsds-dynamic-dev, octace-bioinfo, python-biopython-doc,
python3-alignlib, python3-bcbio, python3-bel-resources, python3-bioblend, python3-biopython-sql,
python3-cgelib, python3-compclust, python3-conda-package-streaming, python3-consensuscore2,
python3-ctdopts, python3-galaxy-lib, python3-intake, python3-joypy, python3-misopy,
python3-ncls, python3-networkx, python3-pycosat, python3-pyflow, python3-roadrunner,
python3-scanpy, python3-seqcluster, q2-alignment, q2-composition, q2-cutadapt,
q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier,
q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata,
q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-shogun,
q2-taxa, q2-types, q2-vsearch, q2cli, q2cwl, q2lint, q2templates, qiime, r-bioc-affxparser,
r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, r-bioc-annotate, r-bioc-annotationdbi,
r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-arrayexpress, r-bioc-biocgenerics,
r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, r-bioc-biovizbase,
r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap,
r-bioc-ctc, r-bioc-cummerbund, r-bioc-dada2, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq,
r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter,
r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges,
r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, r-bioc-gseabase, r-bioc-gsva, r-bioc-gviz,
r-bioc-hypergraph, r-bioc-impute, r-bioc-iranges, r-bioc-limma, r-bioc-makecdfenv,
r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment,
r-bioc-nanostringqcpro, r-bioc-oligo, r-bioc-oligoclasses, r-bioc-org.hs.eg.db,
r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, r-bioc-purecn, r-bioc-qusage,
r-bioc-rbgl, r-bioc-rentrez, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors,
r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, r-bioc-structuralvariantannotation,
r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximport, r-bioc-variantannotation,
r-bioc-xvector, r-cran-adegenet, r-cran-adephylo, r-cran-amap, r-cran-biwt, r-cran-drinsight,
r-cran-dt, r-cran-dynamictreecut, r-cran-fastcluster, r-cran-future.apply, r-cran-future.batchtools,
r-cran-ica, r-cran-itertools, r-cran-kaos, r-cran-metap, r-cran-minerva, r-cran-natserv,
r-cran-nmf, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pcapp, r-cran-proc,
r-cran-rann, r-cran-rcpphnsw, r-cran-robustrankaggreg, r-cran-rocr, r-cran-rook,
r-cran-rsvd, r-cran-shazam, r-cran-sitmo, r-cran-venndiagram, r-other-apmswapp,
ruby-rgfa, vdjtools
Version: 3.8.2
srcpkg_name: debian-med
srcpkg_version: 3.8.2