Hierarchy For Package htsjdk.variant.vcf
Class Hierarchy
- java.lang.Object
- htsjdk.tribble.AbstractFeatureCodec<FEATURE_TYPE,
SOURCE> (implements htsjdk.tribble.FeatureCodec<FEATURE_TYPE, SOURCE>) - htsjdk.tribble.AsciiFeatureCodec<T>
- htsjdk.variant.vcf.AbstractVCFCodec (implements htsjdk.tribble.NameAwareCodec)
- htsjdk.tribble.AsciiFeatureCodec<T>
- htsjdk.variant.vcf.VCFConstants
- htsjdk.variant.vcf.VCFEncoder
- htsjdk.variant.vcf.VCFFileReader (implements htsjdk.variant.vcf.VCFReader)
- htsjdk.variant.vcf.VCFHeader (implements htsjdk.beta.plugin.HtsHeader, java.io.Serializable)
- htsjdk.variant.vcf.VCFHeaderLine (implements java.lang.Comparable<T>, java.io.Serializable)
- htsjdk.variant.vcf.VCFCompoundHeaderLine (implements htsjdk.variant.vcf.VCFIDHeaderLine)
- htsjdk.variant.vcf.VCFFormatHeaderLine
- htsjdk.variant.vcf.VCFInfoHeaderLine
- htsjdk.variant.vcf.VCFSimpleHeaderLine (implements htsjdk.variant.vcf.VCFIDHeaderLine)
- htsjdk.variant.vcf.VCFAltHeaderLine
- htsjdk.variant.vcf.VCFContigHeaderLine
- htsjdk.variant.vcf.VCFFilterHeaderLine
- htsjdk.variant.vcf.VCFMetaHeaderLine
- htsjdk.variant.vcf.VCFPedigreeHeaderLine
- htsjdk.variant.vcf.VCFSampleHeaderLine
- htsjdk.variant.vcf.VCFCompoundHeaderLine (implements htsjdk.variant.vcf.VCFIDHeaderLine)
- htsjdk.variant.vcf.VCFHeaderLineTranslator
- htsjdk.variant.vcf.VCFIteratorBuilder
- htsjdk.variant.vcf.VCFPassThruTextTransformer (implements htsjdk.variant.vcf.VCFTextTransformer)
- htsjdk.variant.vcf.VCFPercentEncodedTextTransformer (implements htsjdk.variant.vcf.VCFTextTransformer)
- htsjdk.variant.vcf.VCFRecordCodec (implements htsjdk.samtools.util.SortingCollection.Codec<T>)
- htsjdk.variant.vcf.VCFStandardHeaderLines
- htsjdk.variant.vcf.VCFUtils
- htsjdk.tribble.AbstractFeatureCodec<FEATURE_TYPE,
Interface Hierarchy
- java.lang.AutoCloseable
- java.io.Closeable
- htsjdk.samtools.util.CloseableIterator<T> (also extends java.util.Iterator<E>)
- htsjdk.variant.vcf.VCFIterator
- htsjdk.variant.vcf.VCFReader (also extends java.lang.Iterable<T>)
- htsjdk.samtools.util.CloseableIterator<T> (also extends java.util.Iterator<E>)
- java.io.Closeable
- java.lang.Iterable<T>
- java.util.Iterator<E>
- htsjdk.samtools.util.CloseableIterator<T> (also extends java.io.Closeable)
- htsjdk.variant.vcf.VCFIterator
- htsjdk.samtools.util.CloseableIterator<T> (also extends java.io.Closeable)
- htsjdk.variant.vcf.VCFIDHeaderLine
- htsjdk.variant.vcf.VCFTextTransformer
Enum Class Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
- htsjdk.variant.vcf.VCFCompoundHeaderLine.SupportedHeaderLineType
- htsjdk.variant.vcf.VCFHeader.HEADER_FIELDS
- htsjdk.variant.vcf.VCFHeaderLineCount
- htsjdk.variant.vcf.VCFHeaderLineType
- htsjdk.variant.vcf.VCFHeaderVersion
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)