Package htsjdk.beta.plugin.hapref
Interface HaploidReferenceDecoder
- All Superinterfaces:
AutoCloseable
,Closeable
,HtsDecoder<SAMSequenceDictionary,
,ReferenceSequence> HtsQuery<ReferenceSequence>
,Iterable<ReferenceSequence>
- All Known Implementing Classes:
FASTADecoderV1_0
public interface HaploidReferenceDecoder
extends HtsDecoder<SAMSequenceDictionary,ReferenceSequence>
Base class for all
HtsContentType.HAPLOID_REFERENCE
decoders.-
Method Summary
Methods inherited from interface htsjdk.beta.plugin.HtsDecoder
close, getDisplayName, getFileFormat, getHeader, getVersion
Methods inherited from interface htsjdk.beta.plugin.interval.HtsQuery
hasIndex, isQueryable, iterator, query, query, query, query, queryContained, queryContained, queryContained, queryOverlapping, queryOverlapping, queryOverlapping, queryStart
Methods inherited from interface java.lang.Iterable
forEach, spliterator