Package htsjdk.samtools.util
Class FileExtensions
java.lang.Object
htsjdk.samtools.util.FileExtensions
Contains file extension constants for read, alignment, variant and annotation files
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Field Summary
FieldsModifier and TypeFieldDescriptionstatic final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
extensions for read files and related formats.static final String
static final String
static final String
static final String
static final String
extensions for alignment files SAM, BAM, CRAM.static final String
static final String
static final String
static final String
extensions for VCF files and related formats.static final String
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Constructor Summary
Constructors -
Method Summary
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Field Details
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FASTA
extensions for read files and related formats. -
FASTA_INDEX
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SAM
extensions for alignment files SAM, BAM, CRAM.- See Also:
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BAM
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BAI_INDEX
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CRAM
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CRAM_INDEX
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BED
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TABIX_INDEX
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TRIBBLE_INDEX
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VCF
extensions for VCF files and related formats.- See Also:
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VCF_INDEX
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BCF
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COMPRESSED_VCF
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COMPRESSED_VCF_INDEX
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VCF_LIST
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INTERVAL_LIST
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COMPRESSED_INTERVAL_LIST
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DICT
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GZI
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SBI
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CSI
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MD5
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BLOCK_COMPRESSED
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GFF3
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Constructor Details
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FileExtensions
public FileExtensions()
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