Interface ReadFeature
- All Known Implementing Classes:
BaseQualityScore
,Bases
,Deletion
,HardClip
,InsertBase
,Insertion
,Padding
,ReadBase
,RefSkip
,Scores
,SoftClip
,Substitution
public interface ReadFeature
An interface to capture data in read coordinates.
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Method Summary
Modifier and TypeMethodDescriptionbyte
Read features are distinguished by operator, similar to cigar operator.int
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Method Details
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getPosition
int getPosition()- Returns:
- zero-based position in the read
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getOperator
byte getOperator()Read features are distinguished by operator, similar to cigar operator.- Returns:
- type of the read feature
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