Package htsjdk.samtools
Class BAMQueryMultipleIntervalsIteratorFilter
java.lang.Object
htsjdk.samtools.BAMQueryMultipleIntervalsIteratorFilter
Filters out records that do not match any of the given intervals and query type.
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Constructor Summary
ConstructorsConstructorDescriptionBAMQueryMultipleIntervalsIteratorFilter
(QueryInterval[] intervals, boolean contained) -
Method Summary
Modifier and TypeMethodDescriptionstatic htsjdk.samtools.BAMIteratorFilter.IntervalComparison
compareIntervalToRecord
(QueryInterval interval, SAMRecord record) htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState
compareToFilter
(SAMRecord record)
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Constructor Details
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BAMQueryMultipleIntervalsIteratorFilter
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Method Details
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compareToFilter
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compareIntervalToRecord
public static htsjdk.samtools.BAMIteratorFilter.IntervalComparison compareIntervalToRecord(QueryInterval interval, SAMRecord record)
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