Package htsjdk.samtools.cram.ref
Enum Class ReferenceContextType
- All Implemented Interfaces:
Serializable
,Comparable<ReferenceContextType>
,Constable
Is this
ReferenceContext
Single Reference,
Multiple Reference, or Unmapped?
Section 8.5 of the CRAM spec defines the following values for the Slice Header sequence ID field:
-2: Multiple Reference Slice
-1: Unmapped-Unplaced Slice
Any positive integer (including zero): Single Reference Slice-
Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
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Enum Constant Summary
Enum Constants -
Method Summary
Modifier and TypeMethodDescriptionstatic ReferenceContextType
Returns the enum constant of this class with the specified name.static ReferenceContextType[]
values()
Returns an array containing the constants of this enum class, in the order they are declared.
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Enum Constant Details
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MULTIPLE_REFERENCE_TYPE
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UNMAPPED_UNPLACED_TYPE
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SINGLE_REFERENCE_TYPE
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum class has no constant with the specified nameNullPointerException
- if the argument is null
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