java.lang.Object
htsjdk.samtools.cram.encoding.readfeatures.Scores
All Implemented Interfaces:
ReadFeature, Serializable

public class Scores extends Object implements Serializable, ReadFeature
A read feature representing a contiguous stretch of quality scores in a read.
See Also:
  • Field Details

  • Constructor Details

    • Scores

      public Scores(int position, byte[] sequence)
  • Method Details

    • getScores

      public byte[] getScores()
    • setScores

      public void setScores(byte[] scores)
    • getOperator

      public byte getOperator()
      Description copied from interface: ReadFeature
      Read features are distinguished by operator, similar to cigar operator.
      Specified by:
      getOperator in interface ReadFeature
      Returns:
      type of the read feature
    • getPosition

      public int getPosition()
      Specified by:
      getPosition in interface ReadFeature
      Returns:
      zero-based position in the read
    • toString

      public String toString()
      Overrides:
      toString in class Object
    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object
    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object