Package htsjdk.tribble
Interface Feature
- All Superinterfaces:
Locatable
- All Known Subinterfaces:
BEDFeature
,Gff3Feature
,NamedFeature
- All Known Implementing Classes:
FullBEDFeature
,Gff3FeatureImpl
,Interval
,MutableFeature
,SimpleBEDFeature
,SimpleFeature
,VariantContext
Marker interface for Locatables with Tribble support. A Feature represents a record in a tribble-supported file format.
As
Locatable
, represents a locus on a reference sequence and is expected to return 1-based closed-ended intervals.-
Method Summary
Methods inherited from interface htsjdk.samtools.util.Locatable
contains, contigsMatch, getContig, getEnd, getLengthOnReference, getStart, overlaps, withinDistanceOf
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Method Details
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getChr
Deprecated.on 03/2015. Use getContig() instead.Return the features reference sequence name, e.g chromosome or contig
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