Package htsjdk.samtools
Class HtsgetBAMFileReader.BAMQueryMultipleIntervalsIteratorFilter
java.lang.Object
htsjdk.samtools.HtsgetBAMFileReader.BAMQueryMultipleIntervalsIteratorFilter
- All Implemented Interfaces:
SamRecordFilter
- Enclosing class:
HtsgetBAMFileReader
public static class HtsgetBAMFileReader.BAMQueryMultipleIntervalsIteratorFilter
extends Object
implements SamRecordFilter
Filters out records that do not match any of the given intervals and query type.
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Constructor Summary
ConstructorsConstructorDescriptionBAMQueryMultipleIntervalsIteratorFilter
(List<Locatable> intervals, boolean contained) -
Method Summary
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Constructor Details
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BAMQueryMultipleIntervalsIteratorFilter
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Method Details
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filterOut
Description copied from interface:SamRecordFilter
Determines whether a SAMRecord matches this filter- Specified by:
filterOut
in interfaceSamRecordFilter
- Parameters:
record
- the SAMRecord to evaluate- Returns:
- true if the SAMRecord matches the filter, otherwise false
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filterOut
Description copied from interface:SamRecordFilter
Determines whether a pair of SAMRecords matches this filter- Specified by:
filterOut
in interfaceSamRecordFilter
- Parameters:
first
- the first SAMRecord to evaluatesecond
- the second SAMRecord to evaluate- Returns:
- true if the pair of records matches filter, otherwise false
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