Class PassingVariantFilter

java.lang.Object
htsjdk.variant.variantcontext.filter.PassingVariantFilter
All Implemented Interfaces:
VariantContextFilter, Predicate<VariantContext>

public class PassingVariantFilter extends Object implements VariantContextFilter
A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
  • Constructor Details

    • PassingVariantFilter

      public PassingVariantFilter()
  • Method Details

    • test

      public boolean test(VariantContext variantContext)
      Specified by:
      test in interface Predicate<VariantContext>
      Parameters:
      variantContext - the record to examine for being a SNP
      Returns:
      true if variantContext is a SNP