Package htsjdk.tribble.util
Class TabixUtils
java.lang.Object
htsjdk.tribble.util.TabixUtils
classes that have anything to do with tabix
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Nested Class Summary
Nested ClassesModifier and TypeClassDescriptionstatic class
static class
static class
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic SAMSequenceDictionary
getSequenceDictionary
(File tabixIndex) Generates the SAMSequenceDictionary from the given tabix index filestatic boolean
less64
(long u, long v)
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Field Details
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STANDARD_INDEX_EXTENSION
Deprecated.Use since June 2019FileExtensions.TABIX_INDEX
instead.- See Also:
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Constructor Details
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TabixUtils
public TabixUtils()
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Method Details
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less64
public static boolean less64(long u, long v) -
getSequenceDictionary
Generates the SAMSequenceDictionary from the given tabix index file- Parameters:
tabixIndex
- the tabix index file- Returns:
- non-null sequence dictionary
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FileExtensions.TABIX_INDEX
instead.