Package htsjdk.samtools.cram.io
Class DefaultBitOutputStream
java.lang.Object
java.io.OutputStream
htsjdk.samtools.cram.io.DefaultBitOutputStream
- All Implemented Interfaces:
BitOutputStream
,Closeable
,Flushable
,AutoCloseable
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
close()
void
flush()
toString()
void
write
(boolean bit) Write a single bit specified in the boolean argument.void
write
(boolean bit, long repeat) Write a single bit specified in the boolean argument repeatedly.void
write
(byte b) void
write
(byte[] b) void
write
(byte[] b, int off, int length) void
write
(byte bitContainer, int nofBits) Write specified number of bits supplied in the byte value.void
write
(int value) void
write
(int bitContainer, int nofBits) Write specified number of bits supplied in the integer value.void
write
(long bitContainer, int nofBits) Write specified number of bits supplied in the long value.Methods inherited from class java.io.OutputStream
nullOutputStream
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Constructor Details
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DefaultBitOutputStream
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Method Details
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write
public void write(byte b) -
write
public void write(int value) - Specified by:
write
in classOutputStream
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toString
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write
public void write(long bitContainer, int nofBits) Description copied from interface:BitOutputStream
Write specified number of bits supplied in the long value. The method is naturally limited to 64 bits max.- Specified by:
write
in interfaceBitOutputStream
- Parameters:
bitContainer
- an integer containing the bits to be written outnofBits
- the number of bits to written out, minimum 0, maximum 64.
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write
public void write(int bitContainer, int nofBits) Description copied from interface:BitOutputStream
Write specified number of bits supplied in the integer value. The method is naturally limited to 32 bits max.- Specified by:
write
in interfaceBitOutputStream
- Parameters:
bitContainer
- an integer containing the bits to be written outnofBits
- the number of bits to written out, minimum 0, maximum 32.
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write
public void write(byte bitContainer, int nofBits) Description copied from interface:BitOutputStream
Write specified number of bits supplied in the byte value. The method is naturally limited to 8 bits max.- Specified by:
write
in interfaceBitOutputStream
- Parameters:
bitContainer
- an integer containing the bits to be written outnofBits
- the number of bits to written out, minimum 0, maximum 8.
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write
public void write(boolean bit) Description copied from interface:BitOutputStream
Write a single bit specified in the boolean argument.- Specified by:
write
in interfaceBitOutputStream
- Parameters:
bit
- emit 1 if true, 0 otherwise.
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write
public void write(boolean bit, long repeat) Description copied from interface:BitOutputStream
Write a single bit specified in the boolean argument repeatedly.- Specified by:
write
in interfaceBitOutputStream
- Parameters:
bit
- emit 1 if true, 0 otherwise.repeat
- the number of bits to emit.
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close
public void close()- Specified by:
close
in interfaceAutoCloseable
- Specified by:
close
in interfaceCloseable
- Overrides:
close
in classOutputStream
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flush
public void flush()- Specified by:
flush
in interfaceFlushable
- Overrides:
flush
in classOutputStream
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write
public void write(byte[] b) - Overrides:
write
in classOutputStream
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write
public void write(byte[] b, int off, int length) - Overrides:
write
in classOutputStream
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