Package htsjdk.samtools
Class SecondaryAlignmentSkippingIterator
java.lang.Object
htsjdk.samtools.SecondaryAlignmentSkippingIterator
- Direct Known Subclasses:
NotPrimarySkippingIterator
Wrapper around SAMRecord iterator that skips over secondary elements.
This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to
handle those concerns separately.
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Constructor Summary
ConstructorsConstructorDescriptionSecondaryAlignmentSkippingIterator
(CloseableIterator<SAMRecord> underlyingIt) -
Method Summary
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Constructor Details
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SecondaryAlignmentSkippingIterator
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Method Details
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hasCurrent
public boolean hasCurrent() -
getCurrent
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advance
public boolean advance()
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