Class SecondaryAlignmentSkippingIterator

java.lang.Object
htsjdk.samtools.SecondaryAlignmentSkippingIterator
Direct Known Subclasses:
NotPrimarySkippingIterator

public class SecondaryAlignmentSkippingIterator extends Object
Wrapper around SAMRecord iterator that skips over secondary elements. This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to handle those concerns separately.
  • Constructor Details

  • Method Details

    • hasCurrent

      public boolean hasCurrent()
    • getCurrent

      public SAMRecord getCurrent()
    • advance

      public boolean advance()