Interface ReadFeature

All Known Implementing Classes:
BaseQualityScore, Bases, Deletion, HardClip, InsertBase, Insertion, Padding, ReadBase, RefSkip, Scores, SoftClip, Substitution

public interface ReadFeature
An interface to capture data in read coordinates.
  • Method Summary

    Modifier and Type
    Method
    Description
    byte
    Read features are distinguished by operator, similar to cigar operator.
    int
     
  • Method Details

    • getPosition

      int getPosition()
      Returns:
      zero-based position in the read
    • getOperator

      byte getOperator()
      Read features are distinguished by operator, similar to cigar operator.
      Returns:
      type of the read feature