deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-cran-rcpp
(>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2
(>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel (>= 4.3.0), r-bioc-iranges
(>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0), libc6
(>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11)
Description: |-
sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
Homepage: https://bioconductor.org/packages/dada2/
Installed-Size: '3100'
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Package: r-bioc-dada2
Priority: optional
Section: gnu-r
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown
Version: 1.26.0+dfsg-1
srcpkg_name: r-bioc-dada2
srcpkg_version: 1.26.0+dfsg-1