Artifact debusine:work-request-debug-logs

cmd: autopkgtest --apt-upgrade --output-dir=artifact-dir --summary=artifact-dir/summary --no-built-binaries --needs-internet=run --copy=/etc/resolv.conf:/etc/resolv.conf /tmp/debusine-fetch-exec-upload-wk_yleep/python-click-doc_8.2.0-1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/python3-click_8.2.0-1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/python3-emperor-doc_1.0.3+ds-9.1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/python3-emperor_1.0.3+ds-9.1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/emperor_1.0.3+ds-9.1.dsc -- unshare --arch amd64 --release sid --tarball /var/lib/debusine/worker/system-images/1140235/system.tar.xz
output (contains stdout and stderr):
autopkgtest [15:35:32]: starting date and time: 2025-01-17 15:35:32+0000
autopkgtest [15:35:32]: version 5.38~bpo12+1
autopkgtest [15:35:32]: host debusine-worker-amd64-hades-01; command line: /usr/bin/autopkgtest --apt-upgrade --output-dir=artifact-dir --summary=artifact-dir/summary --no-built-binaries --needs-internet=run --copy=/etc/resolv.conf:/etc/resolv.conf /tmp/debusine-fetch-exec-upload-wk_yleep/python-click-doc_8.2.0-1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/python3-click_8.2.0-1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/python3-emperor-doc_1.0.3+ds-9.1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/python3-emperor_1.0.3+ds-9.1_all.deb /tmp/debusine-fetch-exec-upload-wk_yleep/emperor_1.0.3+ds-9.1.dsc -- unshare --arch amd64 --release sid --tarball /var/lib/debusine/worker/system-images/1140235/system.tar.xz
autopkgtest [15:35:37]: testbed dpkg architecture: amd64
autopkgtest [15:35:37]: testbed apt version: 2.9.20
autopkgtest [15:35:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7324 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 Components [5045 kB]
Fetched 22.6 MB in 2s (9764 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following package was automatically installed and is no longer required:
  libldap-2.5-0
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  libldap-common libldap2 libtext-charwidth-perl libtext-wrapi18n-perl
The following packages will be upgraded:
  apt base-passwd binutils binutils-common binutils-x86-64-linux-gnu
  bsdextrautils bsdutils dash diffutils dpkg dpkg-dev e2fsprogs gcc-14-base
  gettext gettext-base gpg gpgconf gzip init-system-helpers libapt-pkg6.0t64
  libatomic1 libaudit1 libbinutils libblkid1 libc-bin libc6 libcgi-pm-perl
  libcom-err2 libcpanel-json-xs-perl libcrypt1 libctf-nobfd0 libctf0
  libcurl3t64-gnutls libdebconfclient0 libdpkg-perl libext2fs2t64 libgcc-s1
  libglib2.0-0t64 libgomp1 libgprofng0 libgssapi-krb5-2 libhtml-parser-perl
  libicu72 libk5crypto3 libkrb5-3 libkrb5support0 liblz1 liblz4-1 libmount1
  libsasl2-2 libsasl2-modules-db libsframe1 libsmartcols1 libss2 libssl3t64
  libstdc++6 libsystemd0 libtext-markdown-discount-perl libudev1 libuuid1
  libxs-parse-keyword-perl libxxhash0 libzstd1 login logsave mount openssl
  openssl-provider-legacy sysvinit-utils tzdata ucf util-linux
72 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.7 MB of archives.
After this operation, 1324 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.4-1 [106 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-11 [95.5 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-2 [384 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-14 [9288 B]
Get:5 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-14 [137 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-14 [48.6 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-14 [72.7 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-14 [713 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.40-5 [2810 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-4 [60.1 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.4.0-2 [301 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.6+dfsg-2 [300 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.4.0-2 [2302 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 257.2-2 [450 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 257.2-2 [148 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.22 [1115 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.14 [1537 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.13-1 [138 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.4-1 [169 kB]
Get:22 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.4-1 [200 kB]
Get:23 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.4-1 [140 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.4-1 [155 kB]
Get:25 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.4-1 [36.2 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.4-1 [1213 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.277 [10.4 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.6 [53.1 kB]
Get:29 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.22 [1382 kB]
Get:30 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.68 [38.7 kB]
Get:31 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.40-5 [627 kB]
Get:32 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.13-1 [33.2 kB]
Get:33 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.2-1 [23.9 kB]
Get:34 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.2-1 [212 kB]
Get:35 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.2-1 [590 kB]
Get:36 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.2-2+b1 [55.2 kB]
Get:37 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB]
Get:38 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.4-1 [88.4 kB]
Get:39 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-6 [257 kB]
Get:40 http://deb.debian.org/debian sid/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:42 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:43 http://deb.debian.org/debian sid/main amd64 ucf all 3.0048 [42.0 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.43.50.20250108-1 [807 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.43.50.20250108-1 [88.4 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.43.50.20250108-1 [155 kB]
Get:47 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.43.50.20250108-1 [2277 kB]
Get:48 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.43.50.20250108-1 [532 kB]
Get:49 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.43.50.20250108-1 [68.5 kB]
Get:50 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.43.50.20250108-1 [2628 kB]
Get:51 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.43.50.20250108-1 [77.7 kB]
Get:52 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.22.14 [1334 kB]
Get:53 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.22.14 [646 kB]
Get:54 http://deb.debian.org/debian sid/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get:55 http://deb.debian.org/debian sid/main amd64 gpg amd64 2.2.46-1+b1 [532 kB]
Get:56 http://deb.debian.org/debian sid/main amd64 gpgconf amd64 2.2.46-1+b1 [121 kB]
Get:57 http://deb.debian.org/debian sid/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:58 http://deb.debian.org/debian sid/main amd64 libcgi-pm-perl all 4.67-1 [217 kB]
Get:59 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get:60 http://deb.debian.org/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get:62 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get:63 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get:64 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get:65 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get:68 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB]
Get:69 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.82.4-2 [1502 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get:71 http://deb.debian.org/debian sid/main amd64 libldap-common all 2.6.9+dfsg-1 [34.5 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 liblz1 amd64 1.15-1 [38.9 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.2-1 [28.7 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.17-1 [12.9 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.48-1 [65.6 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.0-2 [1422 kB]
Preconfiguring packages ...
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Current default time zone: 'Etc/UTC'
Local time is now:      Fri Jan 17 15:35:54 UTC 2025.
Universal Time is now:  Fri Jan 17 15:35:54 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up libxs-parse-keyword-perl (0.48-1) ...
Setting up libatomic1:amd64 (14.2.0-14) ...
Setting up libss2:amd64 (1.47.2-1) ...
Setting up ucf (3.0048) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libdpkg-perl (1.22.14) ...
Setting up logsave (1.47.2-1) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up mount (2.40.4-1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up gpgconf (2.2.46-1+b1) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libbinutils:amd64 (2.43.50.20250108-1) ...
Setting up openssl (3.4.0-2) ...
Setting up libldap2:amd64 (2.6.9+dfsg-1) ...
Setting up gpg (2.2.46-1+b1) ...
Setting up login (1:4.16.0-2+really2.40.4-1) ...
Setting up libctf0:amd64 (2.43.50.20250108-1) ...
Setting up gettext (0.23.1-1) ...
Setting up libcgi-pm-perl (4.67-1) ...
Setting up e2fsprogs (1.47.2-1) ...
Setting up libglib2.0-0t64:amd64 (2.82.4-2) ...
No schema files found: doing nothing.
Setting up libgprofng0:amd64 (2.43.50.20250108-1) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up binutils-x86-64-linux-gnu (2.43.50.20250108-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ...
Setting up binutils (2.43.50.20250108-1) ...
Setting up dpkg-dev (1.22.14) ...
Processing triggers for libc-bin (2.40-5) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for debianutils (5.21) ...
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
  libldap-2.5-0*
0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
After this operation, 578 kB disk space will be freed.
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(Reading database ... 17092 files and directories currently installed.)
Removing libldap-2.5-0:amd64 (2.5.19+dfsg-1) ...
Processing triggers for libc-bin (2.40-5) ...
autopkgtest [15:35:57]: testbed running kernel: Linux 6.1.0-29-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.123-1 (2025-01-02)
autopkgtest [15:35:57]: @@@@@@@@@@@@@@@@@@@@ source /tmp/debusine-fetch-exec-upload-wk_yleep/emperor_1.0.3+ds-9.1.dsc
gpg: Signature made Mon Jul  1 18:34:32 2024 UTC
gpg:                using RSA key 406220C8B8552802378CCE411F5C7A8B45564314
gpg:                issuer "bage@debian.org"
gpg: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for /tmp/autopkgtest.8N2Lqk/emperor_1.0.3+ds-9.1.dsc: no acceptable signature found
dpkg-source: info: extracting emperor in src
dpkg-source: info: unpacking emperor_1.0.3+ds.orig.tar.xz
dpkg-source: info: unpacking emperor_1.0.3+ds-9.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying do_not_use_custom_numpydoc.patch
dpkg-source: info: applying correct_jsdoc_arguments.patch
dpkg-source: info: applying EditSectionTitle.patch
dpkg-source: info: applying 8b803cd81586b832550eaa2428fa2d0dd581d35f.patch
dpkg-source: info: applying no_future_dependency.patch
dpkg-source: info: applying python3.12,patch
dpkg-source: info: applying pandas-2.patch
autopkgtest [15:35:58]: testing package emperor version 1.0.3+ds-9.1
autopkgtest [15:35:58]: build not needed
autopkgtest [15:35:58]: test run-unit-test: preparing testbed
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  apt-utils
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 329 kB of archives.
After this operation, 1100 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 apt-utils amd64 2.9.22 [329 kB]
Fetched 329 kB in 0s (7155 kB/s)
Selecting previously unselected package apt-utils.
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 17082 files and directories currently installed.)
Preparing to unpack .../apt-utils_2.9.22_amd64.deb ...
Unpacking apt-utils (2.9.22) ...
Setting up apt-utils (2.9.22) ...
Processing triggers for man-db (2.13.0-1) ...
Ign:1 file:/tmp/autopkgtest.8N2Lqk/binaries  InRelease
Get:2 file:/tmp/autopkgtest.8N2Lqk/binaries  Release [816 B]
Get:2 file:/tmp/autopkgtest.8N2Lqk/binaries  Release [816 B]
Ign:3 file:/tmp/autopkgtest.8N2Lqk/binaries  Release.gpg
Get:4 file:/tmp/autopkgtest.8N2Lqk/binaries  Packages [5273 B]
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
The following NEW packages will be installed:
  fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdb libaec0
  libargon2-1 libbabeltrace1 libblas3 libcurl4t64 libdebuginfod-common
  libdebuginfod1t64 libdw1t64 libelf1t64 libexpat1 libgfortran5 libhdf5-310
  libhdf5-hl-310 libipt2 libjs-backbone libjs-bootstrap libjs-bootstrap-tour
  libjs-codemirror libjs-es6-promise libjs-jed libjs-jquery
  libjs-jquery-typeahead libjs-jquery-ui libjs-marked libjs-mathjax
  libjs-moment libjs-requirejs libjs-requirejs-text libjs-text-encoding
  libjs-underscore libjs-xterm libjson-c5 liblapack3 liblbfgsb0 liblzf1
  libmpfr6 libnorm1t64 libnsl2 libpgm-5.3-0t64 libpython3-stdlib
  libpython3.12-minimal libpython3.12-stdlib libpython3.13
  libpython3.13-minimal libpython3.13-stdlib libsodium23
  libsource-highlight-common libsource-highlight4t64 libssw0 libsz2
  libtirpc-common libtirpc3t64 libzmq5 media-types node-jed
  python-tinycss2-common python3 python3-all python3-argon2 python3-asttokens
  python3-attr python3-autocommand python3-biom-format python3-bleach
  python3-bs4 python3-certifi python3-cffi-backend python3-chardet
  python3-charset-normalizer python3-click python3-comm python3-coverage
  python3-dateutil python3-debugpy python3-decorator python3-defusedxml
  python3-emperor python3-emperor-doc python3-executing python3-fastjsonschema
  python3-h5py python3-h5py-serial python3-hdmedians python3-html5lib
  python3-idna python3-inflect python3-iniconfig python3-ipykernel
  python3-ipython python3-ipython-genutils python3-jaraco.context
  python3-jaraco.functools python3-jaraco.text python3-jedi python3-jinja2
  python3-jsonschema python3-jsonschema-specifications python3-jupyter-client
  python3-jupyter-core python3-jupyterlab-pygments python3-markupsafe
  python3-matplotlib-inline python3-minimal python3-mistune
  python3-more-itertools python3-natsort python3-nbclient python3-nbconvert
  python3-nbformat python3-nest-asyncio python3-notebook python3-numpy
  python3-packaging python3-pandas python3-pandas-lib python3-pandocfilters
  python3-parso python3-patsy python3-pexpect python3-pkg-resources
  python3-platformdirs python3-pluggy python3-prometheus-client
  python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval
  python3-pygments python3-pytest python3-referencing python3-requests
  python3-rpds-py python3-scipy python3-send2trash python3-setuptools
  python3-skbio python3-soupsieve python3-stack-data python3-statsmodels
  python3-statsmodels-lib python3-terminado python3-tinycss2 python3-tornado
  python3-traitlets python3-typeguard python3-typeshed
  python3-typing-extensions python3-tz python3-urllib3 python3-wcwidth
  python3-webencodings python3-zipp python3-zmq python3.12 python3.12-minimal
  python3.13 python3.13-minimal
0 upgraded, 161 newly installed, 0 to remove and 0 not upgraded.
Need to get 96.2 MB/96.6 MB of archives.
After this operation, 537 MB of additional disk space will be used.
Get:1 file:/tmp/autopkgtest.8N2Lqk/binaries  python3-click 8.2.0-1 [98.6 kB]
Get:2 file:/tmp/autopkgtest.8N2Lqk/binaries  python3-emperor 1.0.3+ds-9.1 [156 kB]
Get:3 file:/tmp/autopkgtest.8N2Lqk/binaries  python3-emperor-doc 1.0.3+ds-9.1 [138 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 libdebuginfod-common all 0.192-4 [23.7 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.1-3 [740 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get:13 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 libdw1t64 amd64 0.192-4 [255 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libbabeltrace1 amd64 1.5.11-4+b1 [176 kB]
Get:22 http://deb.debian.org/debian sid/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB]
Get:23 http://deb.debian.org/debian sid/main amd64 libdebuginfod1t64 amd64 0.192-4 [32.4 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 libipt2 amd64 2.1.1-1 [47.8 kB]
Get:25 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.1-1+b2 [724 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 libpython3.13 amd64 3.13.1-3 [2151 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 libsource-highlight-common all 3.1.9-4.3 [77.5 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3+b1 [335 kB]
Get:29 http://deb.debian.org/debian sid/main amd64 gdb amd64 15.2-1+b1 [4382 kB]
Get:30 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB]
Get:31 http://deb.debian.org/debian sid/main amd64 libargon2-1 amd64 0~20190702+dfsg-4+b2 [21.4 kB]
Get:32 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-4 [152 kB]
Get:33 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.11.1-1+b1 [352 kB]
Get:34 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB]
Get:35 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B]
Get:36 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB]
Get:37 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB]
Get:38 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:39 http://deb.debian.org/debian sid/main amd64 libjs-backbone all 1.4.1~dfsg+~1.4.15-3 [186 kB]
Get:40 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:42 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap-tour all 0.12.0+dfsg-5 [20.9 kB]
Get:43 http://deb.debian.org/debian sid/main amd64 libjs-codemirror all 5.65.0+~cs5.83.9-3 [774 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 libjs-es6-promise all 4.2.8-12 [15.9 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 node-jed all 1.1.1-4 [14.7 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libjs-jed all 1.1.1-4 [3772 B]
Get:47 http://deb.debian.org/debian sid/main amd64 libjs-jquery-typeahead all 2.11.0+dfsg1-3 [47.7 kB]
Get:48 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:49 http://deb.debian.org/debian sid/main amd64 libjs-marked all 4.2.3+ds+~4.0.7-3 [34.7 kB]
Get:50 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:51 http://deb.debian.org/debian sid/main amd64 libjs-moment all 2.29.4+ds-1 [155 kB]
Get:52 http://deb.debian.org/debian sid/main amd64 libjs-requirejs all 2.3.7+ds+~2.1.37-1 [196 kB]
Get:53 http://deb.debian.org/debian sid/main amd64 libjs-requirejs-text all 2.0.12-1.1 [9016 B]
Get:54 http://deb.debian.org/debian sid/main amd64 libjs-text-encoding all 0.7.0-5 [104 kB]
Get:55 http://deb.debian.org/debian sid/main amd64 libjs-xterm all 5.3.0-3 [456 kB]
Get:56 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB]
Get:57 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB]
Get:58 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB]
Get:59 http://deb.debian.org/debian sid/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB]
Get:60 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get:62 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get:63 http://deb.debian.org/debian sid/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB]
Get:64 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB]
Get:65 http://deb.debian.org/debian sid/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB]
Get:68 http://deb.debian.org/debian sid/main amd64 python-tinycss2-common all 1.4.0-1 [44.8 kB]
Get:69 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.8-5 [677 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.13.1-2 [1056 B]
Get:71 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 python3-argon2 amd64 21.1.0-3 [23.2 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 python3-asttokens all 3.0.0-1 [20.1 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 python3-attr all 24.3.0-1 [68.8 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB]
Get:77 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.12.1-1+b1 [1473 kB]
Get:78 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.12.1-1 [15.0 kB]
Get:79 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get:80 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.2-1 [31.0 kB]
Get:81 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB]
Get:82 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB]
Get:83 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:84 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB]
Get:85 http://deb.debian.org/debian sid/main amd64 python3-biom-format amd64 2.1.16-1+b2 [176 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 python3-html5lib all 1.2-1 [92.2 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 python3-bleach all 6.2.0-1 [51.2 kB]
Get:89 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.6-1 [38.3 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.12.3-3 [133 kB]
Get:91 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2024.12.14+ds-1 [9624 B]
Get:92 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get:93 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB]
Get:94 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB]
Get:95 http://deb.debian.org/debian sid/main amd64 python3-comm all 0.2.1-1 [8104 B]
Get:96 http://deb.debian.org/debian sid/main amd64 python3-coverage amd64 7.6.0+dfsg1-2+b1 [177 kB]
Get:97 http://deb.debian.org/debian sid/main amd64 python3-debugpy amd64 1.8.8+ds-2 [1105 kB]
Get:98 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB]
Get:99 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB]
Get:100 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.3-2 [120 kB]
Get:101 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.0.2-2 [39.0 kB]
Get:102 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.8-2 [41.6 kB]
Get:103 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.2.3-4 [112 kB]
Get:104 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get:105 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get:106 http://deb.debian.org/debian sid/main amd64 python3-patsy all 1.0.1-1 [172 kB]
Get:107 http://deb.debian.org/debian sid/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b1 [2500 kB]
Get:108 http://deb.debian.org/debian sid/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB]
Get:109 http://deb.debian.org/debian sid/main amd64 python3-hdmedians amd64 0.14.2-5.1+b2 [177 kB]
Get:110 http://deb.debian.org/debian sid/main amd64 python3-skbio amd64 0.6.2-4 [1508 kB]
Get:111 http://deb.debian.org/debian sid/main amd64 python3-executing all 2.1.0-0.1 [23.9 kB]
Get:112 http://deb.debian.org/debian sid/main amd64 python3-fastjsonschema all 2.21.1-1 [22.4 kB]
Get:113 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:114 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:115 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get:116 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:117 http://deb.debian.org/debian sid/main amd64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:118 http://deb.debian.org/debian sid/main amd64 python3-parso all 0.8.4-1 [67.8 kB]
Get:119 http://deb.debian.org/debian sid/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-1 [1530 kB]
Get:120 http://deb.debian.org/debian sid/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB]
Get:121 http://deb.debian.org/debian sid/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B]
Get:122 http://deb.debian.org/debian sid/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB]
Get:123 http://deb.debian.org/debian sid/main amd64 python3-prompt-toolkit all 3.0.48-1 [277 kB]
Get:124 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB]
Get:125 http://deb.debian.org/debian sid/main amd64 python3-pure-eval all 0.2.3-1 [11.2 kB]
Get:126 http://deb.debian.org/debian sid/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB]
Get:127 http://deb.debian.org/debian sid/main amd64 python3-ptyprocess all 0.7.0-6 [14.5 kB]
Get:128 http://deb.debian.org/debian sid/main amd64 python3-pexpect all 4.9-3 [55.6 kB]
Get:129 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:130 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:131 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get:132 http://deb.debian.org/debian sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:133 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get:134 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 75.6.0-1 [720 kB]
Get:135 http://deb.debian.org/debian sid/main amd64 python3-ipython all 8.30.0-2 [568 kB]
Get:136 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB]
Get:137 http://deb.debian.org/debian sid/main amd64 python3-jupyter-core all 5.7.2-5 [35.3 kB]
Get:138 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-2 [225 kB]
Get:139 http://deb.debian.org/debian sid/main amd64 python3-tornado amd64 6.4.2-1 [349 kB]
Get:140 http://deb.debian.org/debian sid/main amd64 python3-zmq amd64 26.2.0-1 [219 kB]
Get:141 http://deb.debian.org/debian sid/main amd64 python3-jupyter-client all 8.6.3-2 [92.4 kB]
Get:142 http://deb.debian.org/debian sid/main amd64 python3-nest-asyncio all 1.5.4-1 [6248 B]
Get:143 http://deb.debian.org/debian sid/main amd64 python3-ipykernel all 6.29.5-2 [102 kB]
Get:144 http://deb.debian.org/debian sid/main amd64 python3-ipython-genutils all 0.2.0-7 [21.6 kB]
Get:145 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB]
Get:146 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.35.1-2 [23.5 kB]
Get:147 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B]
Get:148 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB]
Get:149 http://deb.debian.org/debian sid/main amd64 python3-jupyterlab-pygments all 0.2.2-3 [6096 B]
Get:150 http://deb.debian.org/debian sid/main amd64 python3-mistune all 3.0.2-2 [33.2 kB]
Get:151 http://deb.debian.org/debian sid/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB]
Get:152 http://deb.debian.org/debian sid/main amd64 python3-nbclient all 0.8.0-2 [62.2 kB]
Get:153 http://deb.debian.org/debian sid/main amd64 python3-tinycss2 all 1.4.0-1 [24.9 kB]
Get:154 http://deb.debian.org/debian sid/main amd64 python3-pandocfilters all 1.5.1-1 [23.7 kB]
Get:155 http://deb.debian.org/debian sid/main amd64 python3-nbconvert all 7.16.5-1 [159 kB]
Get:156 http://deb.debian.org/debian sid/main amd64 python3-terminado all 0.18.1-1 [17.3 kB]
Get:157 http://deb.debian.org/debian sid/main amd64 python3-prometheus-client all 0.19.0+ds1-1 [35.0 kB]
Get:158 http://deb.debian.org/debian sid/main amd64 python3-send2trash all 1.8.3-1 [15.8 kB]
Get:159 http://deb.debian.org/debian sid/main amd64 python3-notebook all 6.4.13-5 [1537 kB]
Get:160 http://deb.debian.org/debian sid/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:161 http://deb.debian.org/debian sid/main amd64 python3-pytest all 8.3.4-1 [250 kB]
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Setting up python3-pure-eval (0.2.3-1) ...
Setting up python3-send2trash (1.8.3-1) ...
Setting up python3-tinycss2 (1.4.0-1) ...
Setting up python3-scipy (1.14.1-3) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-parso (0.8.4-1) ...
Setting up python3-defusedxml (0.7.1-3) ...
Setting up python3-ipython-genutils (0.2.0-7) ...
Setting up python3-asttokens (3.0.0-1) ...
Setting up python3-charset-normalizer (3.4.0-1+b1) ...
Setting up python3-pytest (8.3.4-1) ...
Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ...
Setting up python3.12 (3.12.8-5) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-h5py-serial (3.12.1-1+b1) ...
Setting up python3-all (3.13.1-2) ...
Setting up python3-coverage (7.6.0+dfsg1-2+b1) ...
Setting up python3-debugpy (1.8.8+ds-2) ...
Setting up python3-bs4 (4.12.3-3) ...
Setting up python3-bleach (6.2.0-1) ...
Setting up python3-matplotlib-inline (0.1.6-2) ...
Setting up python3-comm (0.2.1-1) ...
Setting up python3-jupyterlab-pygments (0.2.2-3) ...
Setting up python3-patsy (1.0.1-1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-prometheus-client (0.19.0+ds1-1) ...
Setting up python3-pandas (2.2.3+dfsg-5) ...
Setting up python3-executing (2.1.0-0.1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-pexpect (4.9-3) ...
Setting up python3-zmq (26.2.0-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up python3-h5py (3.12.1-1) ...
Setting up python3-terminado (0.18.1-1) ...
Setting up python3-statsmodels (0.14.4+dfsg-1) ...
Setting up python3-argon2 (21.1.0-3) ...
Setting up python3-jupyter-client (8.6.3-2) ...
Setting up python3-stack-data (0.6.3-1) ...
Setting up python3-referencing (0.35.1-2) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up python3-jedi (0.19.1+ds1-1) ...
Setting up python3-biom-format (2.1.16-1+b2) ...
Setting up python3-ipython (8.30.0-2) ...
Setting up python3-skbio (0.6.2-4) ...
Setting up python3-ipykernel (6.29.5-2) ...
Setting up python3-jsonschema-specifications (2023.12.1-2) ...
Setting up python3-emperor (1.0.3+ds-9.1) ...
Setting up python3-jsonschema (4.19.2-6) ...
Setting up python3-nbformat (5.9.1-1) ...
Setting up python3-nbclient (0.8.0-2) ...
Setting up python3-nbconvert (7.16.5-1) ...
Setting up python3-notebook (6.4.13-5) ...
Processing triggers for libc-bin (2.40-5) ...
Processing triggers for man-db (2.13.0-1) ...
autopkgtest [15:37:09]: test run-unit-test: [-----------------------
/tmp/autopkgtest.8N2Lqk/build.CHN/src/debian/tests/run-unit-test: line 13: quilt: command not found
Running Tests
Testing with python3.12 in /tmp/autopkgtest.8N2Lqk/autopkgtest_tmp:
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /tmp/autopkgtest.8N2Lqk/autopkgtest_tmp
plugins: typeguard-4.4.1
collected 112 items

tests/test_core.py ..................................................... [ 47%]
.................................                                        [ 76%]
tests/test_format.py .                                                   [ 77%]
tests/test_pandas.py ......                                              [ 83%]
tests/test_qiime_backports/test_make_3d_plots.py ...                     [ 85%]
tests/test_qiime_backports/test_util.py ......                           [ 91%]
tests/test_util.py ..........                                            [100%]

=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/emperor/__init__.py:9
  /usr/lib/python3/dist-packages/emperor/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    import pkg_resources

tests/test_util.py::TopLevelTests::test_nbinstall
  /usr/lib/python3/dist-packages/notebook/nbextensions.py:15: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
  given by the platformdirs library.  To remove this warning and
  see the appropriate new directories, set the environment variable
  `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
  The use of platformdirs will be the default in `jupyter_core` v6
    from jupyter_core.paths import (

tests/test_util.py::TopLevelTests::test_nbinstall
  /usr/lib/python3/dist-packages/notebook/nbextensions.py:111: DeprecationWarning: `install_nbextension`'s `verbose` parameter is deprecated, it will have no effects and will be removed in Notebook 5.0
    warnings.warn("`install_nbextension`'s `verbose` parameter is deprecated, it will have no effects and will be removed in Notebook 5.0", DeprecationWarning)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 112 passed, 3 warnings in 1.11s ========================
Testing with python3.13 in /tmp/autopkgtest.8N2Lqk/autopkgtest_tmp:
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /tmp/autopkgtest.8N2Lqk/autopkgtest_tmp
plugins: typeguard-4.4.1
collected 112 items

tests/test_core.py ..................................................... [ 47%]
.................................                                        [ 76%]
tests/test_format.py .                                                   [ 77%]
tests/test_pandas.py ......                                              [ 83%]
tests/test_qiime_backports/test_make_3d_plots.py ...                     [ 85%]
tests/test_qiime_backports/test_util.py ......                           [ 91%]
tests/test_util.py ..........                                            [100%]

=============================== warnings summary ===============================
../../../usr/lib/python3/dist-packages/emperor/__init__.py:9
  /usr/lib/python3/dist-packages/emperor/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    import pkg_resources

tests/test_util.py::TopLevelTests::test_nbinstall
  /usr/lib/python3/dist-packages/notebook/nbextensions.py:15: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
  given by the platformdirs library.  To remove this warning and
  see the appropriate new directories, set the environment variable
  `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
  The use of platformdirs will be the default in `jupyter_core` v6
    from jupyter_core.paths import (

tests/test_util.py::TopLevelTests::test_nbinstall
  /usr/lib/python3/dist-packages/notebook/nbextensions.py:111: DeprecationWarning: `install_nbextension`'s `verbose` parameter is deprecated, it will have no effects and will be removed in Notebook 5.0
    warnings.warn("`install_nbextension`'s `verbose` parameter is deprecated, it will have no effects and will be removed in Notebook 5.0", DeprecationWarning)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 112 passed, 3 warnings in 1.05s ========================
PASS
/tmp/autopkgtest.8N2Lqk/build.CHN/src/debian/tests/run-unit-test: line 32: quilt: command not found
autopkgtest [15:37:13]: test run-unit-test: -----------------------]
run-unit-test        PASS
autopkgtest [15:37:13]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
autopkgtest [15:37:13]: @@@@@@@@@@@@@@@@@@@@ summary
run-unit-test        PASS

aborted: False
returncode: 0

Files in working directory:
artifact-dir
artifact-dir/binaries
artifact-dir/binaries/python-click-doc.deb
artifact-dir/binaries/python3-click.deb
artifact-dir/binaries/python3-emperor-doc.deb
artifact-dir/binaries/python3-emperor.deb
artifact-dir/log
artifact-dir/run-unit-test-packages
artifact-dir/run-unit-test-stderr
artifact-dir/run-unit-test-stdout
artifact-dir/summary
artifact-dir/testbed-packages
artifact-dir/testinfo.json
artifact-dir/testpkg-version
--------------------