- a - Variable in class melting.ionCorrection.magnesiumCorrections.Owczarzy08MagnesiumCorrection
-
- addData(HashMap<String, Thermodynamics>) - Method in class melting.DataCollect
-
add all of the mappings from the specified HashMap to the data of DataCollect.
- addLayoutComponent(Component, Object) - Method in class meltinggui.MeltingLayout
-
Adds a component to the layout, specifying that it belongs either to the
label group or to the input group, according to the constraint given.
- addLayoutComponent(String, Component) - Method in class meltinggui.MeltingLayout
-
Deprecated.
Only here because the interface demands it. Replaced by
addLayoutComponent(Component, Object)
.
- addObserver(Observer) - Method in class meltinggui.frames.MeltingFrame
-
Adds an observer to the melting frame observable.
- addObserver(Observer) - Method in class meltinggui.frames.OuterFrame
-
Adds an observer to the melting frame.
- addResult(double, double) - Method in class melting.Environment
-
increments the ThermoResult enthalpy and ThermoResult entropy of Environment.
- aFormula - Static variable in class melting.ionCorrection.magnesiumCorrections.Tan06MagnesiumCorrection
-
- aFormula - Static variable in class melting.ionCorrection.magnesiumCorrections.Tan07MagnesiumCorrection
-
- Ahsen01 - Class in melting.approximativeMethods
-
This class represents the approxiamtive model ahs01.
- Ahsen01() - Constructor for class melting.approximativeMethods.Ahsen01
-
- Ahsen01_NaEquivalent - Class in melting.ionCorrection.sodiumEquivalence
-
This class represents the model for a sodium equivalence ahs01.
- Ahsen01_NaEquivalent() - Constructor for class melting.ionCorrection.sodiumEquivalence.Ahsen01_NaEquivalent
-
- Ahsen01DMSOCorrection - Class in melting.otherCorrections.dmsoCorrections
-
This class represents the DMSO correction model ahs01.
- Ahsen01DMSOCorrection() - Constructor for class melting.otherCorrections.dmsoCorrections.Ahsen01DMSOCorrection
-
- Ahsen01SodiumCorrection - Class in melting.ionCorrection.sodiumCorrections
-
This class represents the sodium correction model ahs01.
- Ahsen01SodiumCorrection() - Constructor for class melting.ionCorrection.sodiumCorrections.Ahsen01SodiumCorrection
-
- AllawiSantalucia97 - Class in melting.patternModels.cricksPair
-
This class represents the nearest neighbor model all97.
- AllawiSantalucia97() - Constructor for class melting.patternModels.cricksPair.AllawiSantalucia97
-
- AllawiSantaluciaPeyret97_98_99mm - Class in melting.patternModels.singleMismatch
-
This class represents the single mismatch model allsanpey.
- AllawiSantaluciaPeyret97_98_99mm() - Constructor for class melting.patternModels.singleMismatch.AllawiSantaluciaPeyret97_98_99mm
-
- AllawiSantaluciaPeyret97_98_99tanmm - Class in melting.patternModels.tandemMismatches
-
This class represents the tandem mismatches model allsanpey.
- AllawiSantaluciaPeyret97_98_99tanmm() - Constructor for class melting.patternModels.tandemMismatches.AllawiSantaluciaPeyret97_98_99tanmm
-
- ApproximativeMode - Class in melting.approximativeMethods
-
This class represents the approximative model.
- ApproximativeMode() - Constructor for class melting.approximativeMethods.ApproximativeMode
-
- approximativeMode - Static variable in class melting.configuration.OptionManagement
-
Option name for the choice of approximative computation method.
- ArgsMessage - Class in meltinggui
-
A message that GUI components can send the main program, containing MELTING
arguments that it can use to get results.
- ArgsMessage(ArgsMessage.ArgumentType, String) - Constructor for class meltinggui.ArgsMessage
-
Fills in the argument type and command-line arguments.
- ArgsMessage.ArgumentType - Enum in meltinggui
-
The different possible types of arguments that can be sent.
- Asanuma05Azobenzene - Class in melting.patternModels.specificAcids
-
This class represents the azobenzene (X_C or X_T) model asa05.
- Asanuma05Azobenzene() - Constructor for class melting.patternModels.specificAcids.Asanuma05Azobenzene
-
- azobenzeneMethod - Static variable in class melting.configuration.OptionManagement
-
Option name for the choice of azobenzene computation method.