public class Tan06MagnesiumCorrection extends EntropyCorrection implements NamedMethod
Modifier and Type | Field and Description |
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protected static java.lang.String |
aFormula |
protected static java.lang.String |
bFormula |
protected static java.lang.String |
entropyCorrection
String entropyCorrection : formula for the entropy correction
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protected static java.lang.String |
gFormula
String gFormula : function associated with the electrostatic folding free energy per base stack.
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Constructor and Description |
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Tan06MagnesiumCorrection() |
Modifier and Type | Method and Description |
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static double |
computeFreeEnergyPerBaseStack(Environment environment)
represents the function associated with the electrostatic folding free energy per base stack.
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protected double |
correctEntropy(Environment environment)
corrects the computed entropy (delta S (Na = 1M)).
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java.lang.String |
getName()
Gets the full name of the method.
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boolean |
isApplicable(Environment environment)
Check if the environment chosen by the user is a applicable with the correction model.
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correctMeltingResults
protected static java.lang.String entropyCorrection
protected static java.lang.String aFormula
protected static java.lang.String bFormula
protected static java.lang.String gFormula
public boolean isApplicable(Environment environment)
CorrectionMethod
isApplicable
in interface CorrectionMethod
isApplicable
in class EntropyCorrection
protected double correctEntropy(Environment environment)
EntropyCorrection
correctEntropy
in class EntropyCorrection
public static double computeFreeEnergyPerBaseStack(Environment environment)
environment
- public java.lang.String getName()
getName
in interface NamedMethod