Uses of Class
jebl.evolution.align.AlignmentTreeBuilderFactory.Result
Packages that use AlignmentTreeBuilderFactory.Result
Package
Description
Provides classes and interfaces for pairwise alignment of two sequences.
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Uses of AlignmentTreeBuilderFactory.Result in jebl.evolution.align
Methods in jebl.evolution.align that return AlignmentTreeBuilderFactory.ResultModifier and TypeMethodDescriptionAlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) AlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener) Will use model F84 for nucleotides and Jukes-Cantor for amino acidAlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model) AlignmentTreeBuilderFactory.build
(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener) AlignmentTreeBuilderFactory.build
(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)