Package jebl.evolution.align.scores
Class JukesCantor
java.lang.Object
jebl.evolution.align.scores.Scores
jebl.evolution.align.scores.NucleotideScores
jebl.evolution.align.scores.JukesCantor
- All Implemented Interfaces:
ScoreMatrix
Jukes Cantor assumes equal substitution frequencies and equal nucleotide
equilibrium frequencies.
- Version:
- $Id: JukesCantor.java 319 2006-05-04 00:16:20Z matt_kearse $
- Author:
- Richard Moir
-
Field Summary
Fields inherited from class jebl.evolution.align.scores.NucleotideScores
CLUSTALW, IUB
-
Constructor Summary
Constructors -
Method Summary
Methods inherited from class jebl.evolution.align.scores.NucleotideScores
getAlphabet, getName, toString
Methods inherited from class jebl.evolution.align.scores.Scores
duplicate, forMatrix, getMatrixString, getScore, includeAdditionalCharacters, includeGaps
-
Constructor Details
-
JukesCantor
public JukesCantor(float d) - Parameters:
d
- evolutionary distance used to calculate values
-