deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.34), libgatbcore3 (>= 1.4.2), libgcc-s1 (>= 3.0), libhdf5-103-1,
libstdc++6 (>= 11), zlib1g (>= 1:1.2.6), python3:any, python3, gatb-core
Description: |-
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
.
Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
.
The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set and for each found SNP:
.
1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
.
This program is superseded by DiscoSnp++.
Homepage: http://colibread.inria.fr/discosnp/
Installed-Size: '2882'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: discosnp
Priority: optional
Section: science
Version: 1:2.6.2-2
srcpkg_name: discosnp
srcpkg_version: 1:2.6.2-2