deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Built-Using: simde (= 0.8.2-1)
Depends: hisat2, python3
Description: |-
Python scripts accompanying hisat2
HISAT2 is a fast and sensitive alignment program for mapping next-
generation sequencing reads (both DNA and RNA) to a population of human
genomes (as well as against a single reference genome). Based on an
extension of BWT for graphs a graph FM index (GFM) was designed and
implementd. In addition to using one global GFM index that represents a
population of human genomes, HISAT2 uses a large set of small GFM
indexes that collectively cover the whole genome (each index
representing a genomic region of 56 Kbp, with 55,000 indexes needed to
cover the human population). These small indexes (called local indexes),
combined with several alignment strategies, enable rapid and accurate
alignment of sequencing reads. This new indexing scheme is called a
Hierarchical Graph FM index (HGFM).
.
This package provides a serires of platform-independent scripts that are
typically expected to be co-installed with the hisat2 binary.
Homepage: https://daehwankimlab.github.io/hisat2/
Installed-Size: '80'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-hisat2
Priority: optional
Section: python
Source: hisat2
Version: 2.2.1-5
srcpkg_name: hisat2
srcpkg_version: 2.2.1-5