FastQCFastQC Report
Tue 3 May 2016
SRR3192400_1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192400_1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94925479
Sequences flagged as poor quality0
Sequence length20-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1179050.047.4648251
GTATCAA1957000.035.708871
GAGTACA2295150.032.9183651
GTACATG3577550.031.6660251
TACATGG3642950.030.625632
AGTACAT2415000.030.518522
CAACGCA2318950.029.3048525
ATCAACG2352350.028.8166123
ACATGGG3866000.028.2653263
TCAACGC2464750.027.7935644
CTAGTAC389600.027.6816223
CTAACGC152900.027.518683
AACGCAG2518900.027.222776
TATCAAC2550550.027.0020032
TAACGCC151850.026.9214214
CATGGGG3088700.025.9947244
GTACTAG291200.025.9072251
CTGTGCG420900.025.6141459
TCTAACG165550.024.8282472
TCGACGG160500.023.28146794