FastQCFastQC Report
Mon 2 May 2016
SRR3192401_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192401_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95735344
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2294510.23967219462855852No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1865250.19483399986529532No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1310120.13684810073905412No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1148800.049.708021
GTATCAA2003500.039.723881
GTACATG3611900.035.6390531
GAGTACA2226350.035.387081
TACATGG3684050.034.4664272
CAACGCA2277400.033.980775
ATCAACG2337100.033.1289373
AGTACAT2361950.032.6361922
ACATGGG3921300.031.89663
AACGCAG2457950.031.6759916
TCAACGC2465500.031.6359044
TATCAAC2560950.030.7527372
CTAGTAC392850.030.2548983
CTAACGC176000.030.2453883
CATGGGG3126000.029.5279674
TAACGCC176050.029.4866624
GTACTAG303750.028.793271
CTGTGCG404300.028.5532259
TCTAACG186650.027.7910442
ACGCAGA2854100.026.935697