FastQCFastQC Report
Tue 3 May 2016
SRR3192658_1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192658_1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97071168
Sequences flagged as poor quality0
Sequence length20-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGGTTCATC975540.10049740001068083No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGAA302000.024.028961
TAGATCG149850.020.3570658
CTATACC449750.018.51805794-95
CGGGTGT318450.017.1930331
TGCGTCG495350.016.7314139
TACCGCG219100.016.6665081
ACGAACG319750.016.38136728-29
CGCATTC577950.015.99353994-95
GTGCGTC560450.015.6329738
GTCCGAA134600.015.6210671
GCGGGTT206550.015.5171281
CGGTATA172700.015.3783684
TACGAAT482000.015.19998552
TTTAGCG351900.014.86341110-11
ACGTACG127750.014.602653536-37
CGTACGA141350.014.47111836-37
ACTATCG226250.014.4129558-59
TACGTAC145650.014.20878534-35
GCGGTGT555550.014.1660492
CCTATAC498600.014.05813694-95