Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192658_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 97548052 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT | 189100 | 0.19385317914908234 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACACG | 19195 | 0.0 | 22.241817 | 7 |
GTCTAAC | 19280 | 0.0 | 21.92066 | 4 |
TCTCCGG | 101575 | 0.0 | 20.552681 | 6 |
AACACGT | 21255 | 0.0 | 19.952202 | 8 |
AGCGCTC | 41510 | 0.0 | 18.740108 | 9 |
CTCTCCG | 113040 | 0.0 | 18.588858 | 5 |
TTATCCG | 44720 | 0.0 | 17.256474 | 8 |
TAGGTCG | 8075 | 0.0 | 16.878664 | 7 |
TCCGGCC | 125140 | 0.0 | 16.784998 | 8 |
AGTCTAA | 27515 | 0.0 | 15.877726 | 3 |
TATCCGG | 49075 | 0.0 | 15.764193 | 9 |
GTACTCG | 30040 | 0.0 | 15.595228 | 28-29 |
ACGTCTC | 29300 | 0.0 | 15.5027075 | 20-21 |
GAGTCTA | 29905 | 0.0 | 15.307032 | 2 |
ATCGCAC | 86630 | 0.0 | 15.098977 | 68-69 |
CTCCGGC | 142650 | 0.0 | 14.950991 | 7 |
CGATCGC | 89850 | 0.0 | 14.764448 | 66-67 |
CTAACAC | 29550 | 0.0 | 14.720942 | 6 |
CCCCTCT | 145050 | 0.0 | 14.522172 | 2 |
CGACCCA | 83060 | 0.0 | 14.449705 | 92-93 |