FastQCFastQC Report
Tue 3 May 2016
SRR3192658_2_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192658_2_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97071168
Sequences flagged as poor quality0
Sequence length20-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT1760340.1813452991520613No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTAAC187700.022.148424
TAACACG190150.022.106357
AACACGT209950.019.7587188
TCTCCGG974500.019.6845046
AGCGCTC402050.018.600379
CTCTCCG1082300.017.9395265
TTATCCG445150.016.829958
TAGGTCG76350.016.564987
TCCGGCC1189050.016.492458
AGTCTAA273050.015.6126243
TATCCGG490350.015.3540739
GTACTCG296500.015.17654528-29
ACGTCTC289050.015.02397820-21
GAGTCTA295800.014.9867722
CTCCGGC1350200.014.7079377
ATCGCAC791750.014.65037768-69
ACCCATT757950.014.48074294-95
CGCAGTT547500.014.4805041
CTAACAC294650.014.3909866
CGATCGC817900.014.2529766-67