deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.813+ds),
libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4)
Description: |-
tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
.
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
Homepage: https://gitlab.com/german.tischler/biobambam2
Installed-Size: '64327'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: biobambam2
Priority: optional
Section: science
Version: 2.0.185+ds-2
srcpkg_name: biobambam2
srcpkg_version: 2.0.185+ds-2