deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: all
Depends: python3:any, python3-pysam, python3-pybedtools, python3-scipy, python3-numpy,
python3-progressbar, python3-pandas, python3-colorlog, python3-mirtop, python3-myst-parser,
python3-yaml
Description: |-
analysis of small RNA in NGS data
Identifies small RNA sequences of all sorts in RNA sequencing data. This is
especially helpful for the identification of RNA that is neither coding nor
belonging to the already well-established group of miRNA, towards many tools
feel constrained to.
.
This package provides the Python module. For executables see the package
'seqcluster'.
Homepage: https://github.com/lpantano/seqcluster
Installed-Size: '108047'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-seqcluster
Priority: optional
Recommends: rna-star, bowtie2 | bowtie, fastqc, samtools, bedtools, mirtop, python3-cutadapt,
libjs-bootstrap, libjs-jquery, libjs-jquery-datatables, libjs-jquery-tablesorter,
libjs-jquery-ui, python3-dateutils, python3-tz, r-bioc-deseq2, r-cran-devtools,
r-cran-dplyr, r-cran-ggplot2, r-cran-gplots, r-cran-gridextra, r-cran-gtools,
r-cran-knitr, r-cran-pheatmap, r-cran-reshape, vienna-rna, r-bioc-edger, r-bioc-htsfilter,
r-bioc-degreport
Section: contrib/python
Source: python-seqcluster
Suggests: seqcluster
Version: 1.2.9+ds-4
srcpkg_name: python-seqcluster
srcpkg_version: 1.2.9+ds-4