deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libfreecontact0t64
(>= 1.0.21), libgcc-s1 (>= 3.0), libstdc++6 (>= 14), libxerces-c3.2t64, perl:any
Description: |-
fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the command line tool freecontact(1).
Homepage: https://rostlab.org/
Installed-Size: '1786'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: freecontact
Priority: optional
Section: science
Suggests: bash-completion, hhsuite, hmmer
Version: 1.0.21-14
srcpkg_name: freecontact
srcpkg_version: 1.0.21-14