deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.38), libcairo2 (>= 1.2.4), libcurl4t64 (>= 7.16.2), libgbtools0t64
(>= 4.44.1+dfsg), libglib2.0-0t64 (>= 2.22.0), libgtk2.0-0t64 (>= 2.12.0), libpango-1.0-0
(>= 1.14.0), libstdc++6 (>= 4.1.1)
Description: |-
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with
an extensive set of user-configurable modes to color residues.
.
* View multiple sequence alignments.
* Residues can be coloured by conservation, with user-configurable
cutoffs and colours.
* Residues can be coloured by residue type (user-configurable).
* Colour schemes can be imported or exported.
* Swissprot (or PIR) entries can be fetched by double clicking.
* The position in the alignment can be easily tracked.
* Manual deletion of rows and columns.
* Automatic editing of rows and columns based on customisable criteria:
- removal of all-gap columns;
- removal of all gaps;
- removal of redundant sequences;
- removal of a column by a user-specified percentage of gaps;
- filtering of sequences by percent identity;
- removal of sequences by a user-specified percentage of gaps;
- removal of partial sequences (those starting or ending with
gaps); and
- removal of columns by conservation (with user-specified
upper/lower cutoffs).
* The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
* Distance matrices between sequences can be generated using a variety
of distance metrics.
* Distance matrices can be imported or exported.
* Phylogenetic trees can be constructed based on various distance-based
tree reconstruction algorithms.
* Trees can be saved in New Hampshire format.
* Belvu can perform bootstrap phylogenetic reconstruction.
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Installed-Size: '1235'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: belvu
Priority: optional
Provides: acedb-other-belvu
Section: science
Source: seqtools (4.44.1+dfsg-7.1)
Version: 4.44.1+dfsg-7.1+b2
srcpkg_name: seqtools
srcpkg_version: 4.44.1+dfsg-7.1