sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-10.freexian.com
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| opentsne 1.0.2-2+bd1 (arm64) Fri, 04 Oct 2024 23:00:19 +0000 |
+==============================================================================+
Package: opentsne
Version: 1.0.2-2+bd1
Source Version: 1.0.2-2
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
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Get:1 file:/build/opentsne-TjMpGy/resolver-Czf4Yk/apt_archive ./ InRelease
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Get:5 file:/build/opentsne-TjMpGy/resolver-Czf4Yk/apt_archive ./ Packages [47.3 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9878 kB]
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The following NEW packages will be installed:
appstream libappstream5 libatomic1 libbrotli1 libcurl3t64-gnutls
libglib2.0-0t64 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.5-0 libnghttp2-14 libnghttp3-9 libngtcp2-16
libngtcp2-crypto-gnutls8 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db
libssh2-1t64 libstemmer0d libxmlb2 shared-mime-info
The following packages will be upgraded:
bsdextrautils bsdutils libblkid1 libbsd0 libmount1 libsmartcols1 libuuid1
libyaml-libyaml-perl lintian login mount tzdata util-linux
13 upgraded, 24 newly installed, 0 to remove and 0 not upgraded.
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Get:21 http://deb.debian.org/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libcurl3t64-gnutls arm64 8.10.1-1 [329 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 libstemmer0d arm64 2.2.0-4+b1 [112 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libxmlb2 arm64 0.3.19-1 [58.6 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libappstream5 arm64 1.0.3-1 [207 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 appstream arm64 1.0.3-1 [466 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libbsd0 arm64 0.12.2-2 [129 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 lintian all 2.119.0 [1056 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.902.0+ds-2 [33.6 kB]
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Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
Setting up libnghttp2-14:arm64 (1.63.0-1) ...
Setting up libkrb5support0:arm64 (1.21.3-3) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ...
Setting up tzdata (2024b-1) ...
Current default time zone: 'Etc/UTC'
Local time is now: Fri Oct 4 23:00:55 UTC 2024.
Universal Time is now: Fri Oct 4 23:00:55 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libatomic1:arm64 (14.2.0-5) ...
Setting up libk5crypto3:arm64 (1.21.3-3) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ...
Setting up libnghttp3-9:arm64 (1.4.0-1) ...
Setting up mount (2.40.2-9) ...
Setting up libngtcp2-16:arm64 (1.6.0-1) ...
Setting up libkrb5-3:arm64 (1.21.3-3) ...
Setting up libstemmer0d:arm64 (2.2.0-4+b1) ...
Setting up libssh2-1t64:arm64 (1.11.0-7) ...
Setting up libbsd0:arm64 (0.12.2-2) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ...
Setting up login (1:4.16.0-2+really2.40.2-9) ...
Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3) ...
Setting up libglib2.0-0t64:arm64 (2.82.1-1) ...
No schema files found: doing nothing.
Setting up shared-mime-info (2.4-5) ...
Warning: program compiled against libxml 212 using older 209
Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ...
Setting up libxmlb2:arm64 (0.3.19-1) ...
Setting up libcurl3t64-gnutls:arm64 (8.10.1-1) ...
Setting up libappstream5:arm64 (1.0.3-1) ...
Setting up appstream (1.0.3-1) ...
✔ Metadata cache was updated successfully.
Setting up lintian (2.119.0) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-01scu9_l/opentsne_1.0.2-2.dsc exists in /tmp/debusine-fetch-exec-upload-01scu9_l; copying to chroot
I: NOTICE: Log filtering will replace 'build/opentsne-TjMpGy/opentsne-1.0.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/opentsne-TjMpGy' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn, build-essential, fakeroot, dumb-init
Filtered Build-Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [848 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [873 B]
Fetched 2330 B in 0s (216 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ Release [609 B]
Get:2 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ Release [609 B]
Get:3 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfftw3-bin libfftw3-dev
libfftw3-double3 libfftw3-long3 libfftw3-single3
libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libhwasan0
libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
liblbfgsb0 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libproc2-0
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib
libstdc++-14-dev libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1
linux-libc-dev m4 media-types po-debconf procps pybuild-plugin-pyproject
python3 python3-all python3-all-dev python3-autocommand python3-build
python3-decorator python3-dev python3-inflect python3-iniconfig
python3-installer python3-jaraco.context python3-jaraco.functools
python3-joblib python3-minimal python3-more-itertools python3-numpy
python3-packaging python3-pkg-resources python3-pluggy
python3-pyproject-hooks python3-pytest python3-pytest-runner python3-scipy
python3-setuptools python3-sklearn python3-sklearn-lib python3-threadpoolctl
python3-toml python3-typeguard python3-typing-extensions python3-wheel
python3-zipp python3.12 python3.12-dev python3.12-minimal python3.13
python3.13-dev python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc libfftw3-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv python3-pip
python-build-doc python-installer-doc python-joblib-doc gfortran
python-numpy-doc python-scipy-doc python-setuptools-doc python3-dap
python-sklearn-doc ipython3 python3.12-venv python3.12-doc binfmt-support
python3.13-venv python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults
python3-simplejson python3-psutil python3-pygments python3-pil
python3-matplotlib
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfftw3-bin libfftw3-dev
libfftw3-double3 libfftw3-long3 libfftw3-single3
libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libhwasan0
libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
liblbfgsb0 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libproc2-0
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib
libstdc++-14-dev libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1
linux-libc-dev m4 media-types po-debconf procps pybuild-plugin-pyproject
python3 python3-all python3-all-dev python3-autocommand python3-build
python3-decorator python3-dev python3-inflect python3-iniconfig
python3-installer python3-jaraco.context python3-jaraco.functools
python3-joblib python3-minimal python3-more-itertools python3-numpy
python3-packaging python3-pkg-resources python3-pluggy
python3-pyproject-hooks python3-pytest python3-pytest-runner python3-scipy
python3-setuptools python3-sklearn python3-sklearn-lib python3-threadpoolctl
python3-toml python3-typeguard python3-typing-extensions python3-wheel
python3-zipp python3.12 python3.12-dev python3.12-minimal python3.13
python3.13-dev python3.13-minimal rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded.
Need to get 98.1 MB/128 MB of archives.
After this operation, 605 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B]
Get:2 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:6 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:7 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:8 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:9 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:10 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:11 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:12 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:21 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-scipy 1.13.1-5+nocheck1 [18.1 MB]
Get:22 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0~rc3-1 [849 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0~rc3-1 [1835 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-6 [872 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:32 file:/<<BUILDDIR>>/resolver-Czf4Yk/apt_archive ./ python3-sklearn-lib 1.4.2+dfsg-6+debusine1 [5386 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.10.12-1 [2400 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-5 [9161 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-5 [1280 B]
Get:43 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2 [4792 B]
Get:44 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.1.0-2 [1572 B]
Get:45 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-5 [42.0 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-5 [24.2 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-5 [2578 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-5 [1162 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-5 [2385 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-5 [1040 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-5 [1442 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-5 [2363 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-5 [17.7 MB]
Get:54 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-5 [513 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2 [1440 B]
Get:56 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.1.0-2 [5136 B]
Get:57 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-5 [2263 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-5 [10.1 MB]
Get:59 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-5 [19.7 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2 [1200 B]
Get:61 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.1.0-2 [1328 B]
Get:62 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.10 [4516 B]
Get:63 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:68 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.191-2 [188 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libfftw3-double3 arm64 3.3.10-1+b3 [329 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 libfftw3-long3 arm64 3.3.10-1+b3 [533 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libfftw3-single3 arm64 3.3.10-1+b3 [497 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libfftw3-bin arm64 3.3.10-1+b3 [43.3 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libfftw3-dev arm64 3.3.10-1+b3 [1214 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-5 [361 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0~rc3-1 [1920 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0~rc3-1 [1959 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0~rc3-1 [4668 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0~rc3-1 [730 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0~rc3-1 [504 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:117 http://deb.debian.org/debian sid/main arm64 python3-joblib all 1.3.2-3 [216 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 python3-pytest-runner all 2.11.1-4 [8432 B]
Get:121 http://deb.debian.org/debian sid/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-5 gcc-14_14.2.0-5 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.12-1
Package versions: appstream_1.0.3-1 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.10 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.2.0-5 cpp-14-aarch64-linux-gnu_14.2.0-5 cpp-aarch64-linux-gnu_4:14.1.0-2 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-14_14.2.0-5 g++-14-aarch64-linux-gnu_14.2.0-5 g++-aarch64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-14_14.2.0-5 gcc-14-aarch64-linux-gnu_14.2.0-5 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libxmlb2_0.3.19-1 libxs-parse-keyword-perl_0.46-1 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-2 libzstd1_1.5.6+dfsg-1 lintian_2.119.0 linux-libc-dev_6.10.12-1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-9 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 pybuild-plugin-pyproject_6.20240824 python3_3.12.6-1+debusine1 python3-all_3.12.6-1+debusine1 python3-all-dev_3.12.6-1+debusine1 python3-autocommand_2.2.2-3 python3-build_1.2.2-1 python3-decorator_5.1.1-5 python3-dev_3.12.6-1+debusine1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-installer_0.7.0+dfsg1-3 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-joblib_1.3.2-3 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-numpy_1:1.26.4+ds-11+bootstrap1 python3-packaging_24.1-1 python3-pkg-resources_74.1.2-2 python3-pluggy_1.5.0-1 python3-pyproject-hooks_1.1.0-2 python3-pytest_8.3.3-1 python3-pytest-runner_2.11.1-4 python3-scipy_1.13.1-5+nocheck1 python3-setuptools_74.1.2-2 python3-sklearn_1.4.2+dfsg-6 python3-sklearn-lib_1.4.2+dfsg-6+debusine1 python3-threadpoolctl_3.1.0-1 python3-toml_0.10.2-1 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-wheel_0.44.0-2 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.13_3.13.0~rc3-1 python3.13-dev_3.13.0~rc3-1 python3.13-minimal_3.13.0~rc3-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5 sysvinit-utils_3.10-2 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024b-1 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: opentsne
Binary: python3-opentsne
Architecture: any
Version: 1.0.2-2
Maintainer: Debian PaN Maintainers <debian-pan-maintainers@alioth-lists.debian.net>
Uploaders: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>, Picca Frédéric-Emmanuel <picca@debian.org>, Roland Mas <lolando@debian.org>,
Homepage: https://github.com/pavlin-policar/openTSNE
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/science-team/opentsne
Vcs-Git: https://salsa.debian.org/science-team/opentsne.git
Testsuite: autopkgtest-pkg-pybuild
Build-Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn
Package-List:
python3-opentsne deb python optional arch=any
Checksums-Sha1:
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Files:
f8431e0c31572599f673433506ad7eea 22107860 opentsne_1.0.2.orig.tar.gz
2be9018e5537d4743d907dbb892feacf 4712 opentsne_1.0.2-2.debian.tar.xz
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gpgv: Signature made Tue Oct 1 17:40:13 2024 UTC
gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-2.dsc: no acceptable signature found
dpkg-source: info: extracting opentsne in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking opentsne_1.0.2.orig.tar.gz
dpkg-source: info: unpacking opentsne_1.0.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip-one-test-on-i386.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.0.2-2+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package opentsne
dpkg-buildpackage: info: source version 1.0.2-2+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules execute_after_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# remove the cython generated file to force rebuild
rm -f openTSNE/_tsne.cpp openTSNE/kl_divergence.cpp openTSNE/quad_tree.cpp openTSNE/_matrix_mul/matrix_mul_fftw3.cpp openTSNE/_matrix_mul/matrix_mul_numpy.cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_opentsne
* Building wheel...
FFTW3 header files found. Using FFTW implementation of FFT.
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-313
creating build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/__init__.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/utils.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/sklearn.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/metrics.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/nearest_neighbors.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/tsne.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/affinity.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/initialization.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/callbacks.py -> build/lib.linux-aarch64-cpython-313/openTSNE
copying openTSNE/version.py -> build/lib.linux-aarch64-cpython-313/openTSNE
creating build/lib.linux-aarch64-cpython-313/openTSNE/dependencies
copying openTSNE/dependencies/__init__.py -> build/lib.linux-aarch64-cpython-313/openTSNE/dependencies
creating build/lib.linux-aarch64-cpython-313/openTSNE/_matrix_mul
copying openTSNE/_matrix_mul/__init__.py -> build/lib.linux-aarch64-cpython-313/openTSNE/_matrix_mul
creating build/lib.linux-aarch64-cpython-313/openTSNE/dependencies/annoy
copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-aarch64-cpython-313/openTSNE/dependencies/annoy
running build_ext
creating <<PKGBUILDDIR>>/tmp2v430ky5
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /<<PKGBUILDDIR>>/tmp2v430ky5/omp.c -o <<PKGBUILDDIR>>/tmp2v430ky5/omp.o
aarch64-linux-gnu-gcc <<PKGBUILDDIR>>/tmp2v430ky5/omp.o -o /<<PKGBUILDDIR>>/tmp2v430ky5/omp.c
performance hint: openTSNE/quad_tree.pyx:73:5: Exception check on 'update_center_of_mass' will always require the GIL to be acquired.
Possible solutions:
1. Declare 'update_center_of_mass' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on 'update_center_of_mass' to allow an error code to be returned.
performance hint: openTSNE/quad_tree.pxd:21:18: No exception value declared for 'is_close' in pxd file.
Users cimporting this function and calling it without the gil will always require an exception check.
Suggest adding an explicit exception value.
warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node'
warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node'
Found openmp. Compiling with openmp flags...
Compiling openTSNE/quad_tree.pyx because it changed.
[1/1] Cythonizing openTSNE/quad_tree.pyx
building 'openTSNE.quad_tree' extension
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/openTSNE
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c openTSNE/quad_tree.cpp -o build/temp.linux-aarch64-cpython-313/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/quad_tree.cpp:1279:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/openTSNE/quad_tree.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/openTSNE/quad_tree.cpython-313-aarch64-linux-gnu.so -fopenmp
warning: openTSNE/_tsne.pyx:9:7: implicit declaration of 'np'
performance hint: openTSNE/_tsne.pyx:225:5: Exception check on '_estimate_negative_gradient_single' will always require the GIL to be acquired.
Possible solutions:
1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned.
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dest_sig'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dtype'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg_base'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_series'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'last_type'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_type'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_matches'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_candidates'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dst_type'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_matches'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_candidates'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sn'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'type_match'
warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'candidates'
warning: openTSNE/_tsne.pyx:540:8: implicit declaration of 'coord_max'
warning: openTSNE/_tsne.pyx:542:8: implicit declaration of 'coord_min'
performance hint: openTSNE/_tsne.pyx:207:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired.
Possible solutions:
1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned.
performance hint: openTSNE/_tsne.pyx:234:56: Exception check after calling 'is_close' will always require the GIL to be acquired.
Possible solutions:
1. Declare 'is_close' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Declare any exception value explicitly for functions in pxd files.
performance hint: openTSNE/_tsne.pyx:275:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired.
Possible solutions:
1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned.
Compiling openTSNE/_tsne.pyx because it changed.
[1/1] Cythonizing openTSNE/_tsne.pyx
building 'openTSNE._tsne' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c openTSNE/_tsne.cpp -o build/temp.linux-aarch64-cpython-313/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/_tsne.cpp:1279:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/openTSNE/_tsne.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/openTSNE/_tsne.cpython-313-aarch64-linux-gnu.so -fopenmp
warning: openTSNE/kl_divergence.pyx:9:7: implicit declaration of 'np'
warning: openTSNE/kl_divergence.pyx:17:19: implicit declaration of 'estimate_positive_gradient_nn'
Compiling openTSNE/kl_divergence.pyx because it changed.
[1/1] Cythonizing openTSNE/kl_divergence.pyx
building 'openTSNE.kl_divergence' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c openTSNE/kl_divergence.cpp -o build/temp.linux-aarch64-cpython-313/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/kl_divergence.cpp:1279:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/openTSNE/kl_divergence.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/openTSNE/kl_divergence.cpython-313-aarch64-linux-gnu.so -fopenmp
building 'openTSNE.dependencies.annoy.annoylib' extension
creating build/temp.linux-aarch64-cpython-313/openTSNE/dependencies
creating build/temp.linux-aarch64-cpython-313/openTSNE/dependencies/annoy
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.linux-aarch64-cpython-313/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/openTSNE/dependencies/annoy/annoymodule.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/openTSNE/dependencies/annoy/annoylib.cpython-313-aarch64-linux-gnu.so -fopenmp
warning: openTSNE/_matrix_mul/matrix_mul_fftw3.pyx:9:7: implicit declaration of 'np'
Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed.
[1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx
building 'openTSNE._matrix_mul.matrix_mul' extension
creating build/temp.linux-aarch64-cpython-313/openTSNE/_matrix_mul
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.linux-aarch64-cpython-313/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:1282:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -lfftw3 -o build/lib.linux-aarch64-cpython-313/openTSNE/_matrix_mul/matrix_mul.cpython-313-aarch64-linux-gnu.so -fopenmp
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/openTSNE
creating build/bdist.linux-aarch64/wheel/openTSNE/dependencies
copying build/lib.linux-aarch64-cpython-313/openTSNE/dependencies/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE/dependencies
creating build/bdist.linux-aarch64/wheel/openTSNE/dependencies/annoy
copying build/lib.linux-aarch64-cpython-313/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE/dependencies/annoy
copying build/lib.linux-aarch64-cpython-313/openTSNE/dependencies/annoy/annoylib.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE/dependencies/annoy
copying build/lib.linux-aarch64-cpython-313/openTSNE/kl_divergence.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/utils.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/sklearn.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/metrics.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/nearest_neighbors.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/tsne.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/affinity.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/initialization.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/callbacks.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/_tsne.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE
creating build/bdist.linux-aarch64/wheel/openTSNE/_matrix_mul
copying build/lib.linux-aarch64-cpython-313/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE/_matrix_mul
copying build/lib.linux-aarch64-cpython-313/openTSNE/_matrix_mul/matrix_mul.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE/_matrix_mul
copying build/lib.linux-aarch64-cpython-313/openTSNE/version.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-313/openTSNE/quad_tree.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE
running install_egg_info
running egg_info
creating openTSNE.egg-info
writing openTSNE.egg-info/PKG-INFO
writing dependency_links to openTSNE.egg-info/dependency_links.txt
writing requirements to openTSNE.egg-info/requires.txt
writing top-level names to openTSNE.egg-info/top_level.txt
writing manifest file 'openTSNE.egg-info/SOURCES.txt'
reading manifest file 'openTSNE.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'openTSNE'
adding license file 'LICENSE'
writing manifest file 'openTSNE.egg-info/SOURCES.txt'
Copying openTSNE.egg-info to build/bdist.linux-aarch64/wheel/./openTSNE-1.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/openTSNE-1.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_opentsne/.tmp-zwryjvqx/openTSNE-1.0.2-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'openTSNE/__init__.py'
adding 'openTSNE/_tsne.cpython-313-aarch64-linux-gnu.so'
adding 'openTSNE/affinity.py'
adding 'openTSNE/callbacks.py'
adding 'openTSNE/initialization.py'
adding 'openTSNE/kl_divergence.cpython-313-aarch64-linux-gnu.so'
adding 'openTSNE/metrics.py'
adding 'openTSNE/nearest_neighbors.py'
adding 'openTSNE/quad_tree.cpython-313-aarch64-linux-gnu.so'
adding 'openTSNE/sklearn.py'
adding 'openTSNE/tsne.py'
adding 'openTSNE/utils.py'
adding 'openTSNE/version.py'
adding 'openTSNE/_matrix_mul/__init__.py'
adding 'openTSNE/_matrix_mul/matrix_mul.cpython-313-aarch64-linux-gnu.so'
adding 'openTSNE/dependencies/__init__.py'
adding 'openTSNE/dependencies/annoy/__init__.py'
adding 'openTSNE/dependencies/annoy/annoylib.cpython-313-aarch64-linux-gnu.so'
adding 'openTSNE-1.0.2.dist-info/LICENSE'
adding 'openTSNE-1.0.2.dist-info/METADATA'
adding 'openTSNE-1.0.2.dist-info/WHEEL'
adding 'openTSNE-1.0.2.dist-info/top_level.txt'
adding 'openTSNE-1.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built openTSNE-1.0.2-cp313-cp313-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_opentsne
* Building wheel...
FFTW3 header files found. Using FFTW implementation of FFT.
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-312
creating build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/__init__.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/utils.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/sklearn.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/metrics.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/nearest_neighbors.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/tsne.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/affinity.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/initialization.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/callbacks.py -> build/lib.linux-aarch64-cpython-312/openTSNE
copying openTSNE/version.py -> build/lib.linux-aarch64-cpython-312/openTSNE
creating build/lib.linux-aarch64-cpython-312/openTSNE/dependencies
copying openTSNE/dependencies/__init__.py -> build/lib.linux-aarch64-cpython-312/openTSNE/dependencies
creating build/lib.linux-aarch64-cpython-312/openTSNE/_matrix_mul
copying openTSNE/_matrix_mul/__init__.py -> build/lib.linux-aarch64-cpython-312/openTSNE/_matrix_mul
creating build/lib.linux-aarch64-cpython-312/openTSNE/dependencies/annoy
copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-aarch64-cpython-312/openTSNE/dependencies/annoy
running build_ext
creating <<PKGBUILDDIR>>/tmpsvzlxjt4
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /<<PKGBUILDDIR>>/tmpsvzlxjt4/omp.c -o <<PKGBUILDDIR>>/tmpsvzlxjt4/omp.o
aarch64-linux-gnu-gcc <<PKGBUILDDIR>>/tmpsvzlxjt4/omp.o -o /<<PKGBUILDDIR>>/tmpsvzlxjt4/omp.c
Found openmp. Compiling with openmp flags...
building 'openTSNE.quad_tree' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/openTSNE
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/quad_tree.cpp -o build/temp.linux-aarch64-cpython-312/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/quad_tree.cpp:1279:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/openTSNE/quad_tree.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/openTSNE/quad_tree.cpython-312-aarch64-linux-gnu.so -fopenmp
building 'openTSNE._tsne' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_tsne.cpp -o build/temp.linux-aarch64-cpython-312/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/_tsne.cpp:1279:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/openTSNE/_tsne.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/openTSNE/_tsne.cpython-312-aarch64-linux-gnu.so -fopenmp
building 'openTSNE.kl_divergence' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/kl_divergence.cpp -o build/temp.linux-aarch64-cpython-312/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/kl_divergence.cpp:1279:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/openTSNE/kl_divergence.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/openTSNE/kl_divergence.cpython-312-aarch64-linux-gnu.so -fopenmp
building 'openTSNE.dependencies.annoy.annoylib' extension
creating build/temp.linux-aarch64-cpython-312/openTSNE/dependencies
creating build/temp.linux-aarch64-cpython-312/openTSNE/dependencies/annoy
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.linux-aarch64-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-aarch64-linux-gnu.so -fopenmp
building 'openTSNE._matrix_mul.matrix_mul' extension
creating build/temp.linux-aarch64-cpython-312/openTSNE/_matrix_mul
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.linux-aarch64-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:1282:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/aarch64-linux-gnu -lfftw3 -o build/lib.linux-aarch64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-aarch64-linux-gnu.so -fopenmp
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/quad_tree.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE
creating build/bdist.linux-aarch64/wheel/openTSNE/dependencies
copying build/lib.linux-aarch64-cpython-312/openTSNE/dependencies/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE/dependencies
creating build/bdist.linux-aarch64/wheel/openTSNE/dependencies/annoy
copying build/lib.linux-aarch64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE/dependencies/annoy
copying build/lib.linux-aarch64-cpython-312/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE/dependencies/annoy
copying build/lib.linux-aarch64-cpython-312/openTSNE/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/utils.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/sklearn.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/metrics.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/nearest_neighbors.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/tsne.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/affinity.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/initialization.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/callbacks.py -> build/bdist.linux-aarch64/wheel/./openTSNE
creating build/bdist.linux-aarch64/wheel/openTSNE/_matrix_mul
copying build/lib.linux-aarch64-cpython-312/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-aarch64/wheel/./openTSNE/_matrix_mul
copying build/lib.linux-aarch64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE/_matrix_mul
copying build/lib.linux-aarch64-cpython-312/openTSNE/version.py -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/_tsne.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE
copying build/lib.linux-aarch64-cpython-312/openTSNE/kl_divergence.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./openTSNE
running install_egg_info
running egg_info
writing openTSNE.egg-info/PKG-INFO
writing dependency_links to openTSNE.egg-info/dependency_links.txt
writing requirements to openTSNE.egg-info/requires.txt
writing top-level names to openTSNE.egg-info/top_level.txt
reading manifest file 'openTSNE.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'openTSNE'
adding license file 'LICENSE'
writing manifest file 'openTSNE.egg-info/SOURCES.txt'
Copying openTSNE.egg-info to build/bdist.linux-aarch64/wheel/./openTSNE-1.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/openTSNE-1.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_opentsne/.tmp-ymjtt0uz/openTSNE-1.0.2-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'openTSNE/__init__.py'
adding 'openTSNE/_tsne.cpython-312-aarch64-linux-gnu.so'
adding 'openTSNE/affinity.py'
adding 'openTSNE/callbacks.py'
adding 'openTSNE/initialization.py'
adding 'openTSNE/kl_divergence.cpython-312-aarch64-linux-gnu.so'
adding 'openTSNE/metrics.py'
adding 'openTSNE/nearest_neighbors.py'
adding 'openTSNE/quad_tree.cpython-312-aarch64-linux-gnu.so'
adding 'openTSNE/sklearn.py'
adding 'openTSNE/tsne.py'
adding 'openTSNE/utils.py'
adding 'openTSNE/version.py'
adding 'openTSNE/_matrix_mul/__init__.py'
adding 'openTSNE/_matrix_mul/matrix_mul.cpython-312-aarch64-linux-gnu.so'
adding 'openTSNE/dependencies/__init__.py'
adding 'openTSNE/dependencies/annoy/__init__.py'
adding 'openTSNE/dependencies/annoy/annoylib.cpython-312-aarch64-linux-gnu.so'
adding 'openTSNE-1.0.2.dist-info/LICENSE'
adding 'openTSNE-1.0.2.dist-info/METADATA'
adding 'openTSNE-1.0.2.dist-info/WHEEL'
adding 'openTSNE-1.0.2.dist-info/top_level.txt'
adding 'openTSNE-1.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built openTSNE-1.0.2-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_opentsne/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.0rc3, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_opentsne/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 163 items
tests/test_affinities.py ......................... [ 15%]
tests/test_correctness.py .......................... [ 31%]
tests/test_different_usages.py ............ [ 38%]
tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%]
ss [ 64%]
tests/test_sklearn_wrapper.py ... [ 66%]
tests/test_tsne.py ...ss............................................... [ 98%]
tests/test_utils.py ... [100%]
=============================== warnings summary ===============================
tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error
/usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly.
warnings.warn(
tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity
tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity
tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances
tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors
tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index
tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_opentsne/build/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions.
warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 137 passed, 26 skipped, 7 warnings in 71.57s (0:01:11) ============
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_opentsne/build; python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_opentsne/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 163 items
tests/test_affinities.py ......................... [ 15%]
tests/test_correctness.py .......................... [ 31%]
tests/test_different_usages.py ............ [ 38%]
tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%]
ss [ 64%]
tests/test_sklearn_wrapper.py ... [ 66%]
tests/test_tsne.py ...ss............................................... [ 98%]
tests/test_utils.py ... [100%]
=============================== warnings summary ===============================
tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error
/usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly.
warnings.warn(
tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity
tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity
tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances
tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors
tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index
tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_opentsne/build/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions.
warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 137 passed, 26 skipped, 7 warnings in 67.93s (0:01:07) ============
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-opentsne/ -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_numpy3 -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-opentsne' in '../python3-opentsne_1.0.2-2+bd1_arm64.deb'.
dpkg-deb: building package 'python3-opentsne-dbgsym' in '../python3-opentsne-dbgsym_1.0.2-2+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../opentsne_1.0.2-2+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../opentsne_1.0.2-2+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-04T23:06:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
opentsne_1.0.2-2+bd1_arm64.changes:
-----------------------------------
Format: 1.8
Date: Fri, 04 Oct 2024 23:02:00 +0000
Source: opentsne (1.0.2-2)
Binary: python3-opentsne python3-opentsne-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 1.0.2-2+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
python3-opentsne - t-Distributed Stochastic Neighbor Embedding algorithm
Changes:
opentsne (1.0.2-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
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Files:
5fe91c89296415773a7a2338382c8295 8006 python optional opentsne_1.0.2-2+bd1_arm64.buildinfo
5fe6466dc43a6980682e758b486443fb 4712676 debug optional python3-opentsne-dbgsym_1.0.2-2+bd1_arm64.deb
f8f0ab7f344dfa06c1e1ead1900a56c1 466320 python optional python3-opentsne_1.0.2-2+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: opentsne (1.0.2-2)
Binary: python3-opentsne python3-opentsne-dbgsym
Architecture: arm64
Version: 1.0.2-2+bd1
Binary-Only-Changes:
opentsne (1.0.2-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Fri, 04 Oct 2024 23:02:00 +0000
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Fri, 04 Oct 2024 23:06:32 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.4),
bash (= 5.2.32-1+b1),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.10),
bzip2 (= 1.0.8-6),
coreutils (= 9.4-3.1),
cpp (= 4:14.1.0-2),
cpp-14 (= 14.2.0-5),
cpp-14-aarch64-linux-gnu (= 14.2.0-5),
cpp-aarch64-linux-gnu (= 4:14.1.0-2),
cython3 (= 3.0.11+dfsg-1+debusine1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.1.0-2),
g++-14 (= 14.2.0-5),
g++-14-aarch64-linux-gnu (= 14.2.0-5),
g++-aarch64-linux-gnu (= 4:14.1.0-2),
gcc (= 4:14.1.0-2),
gcc-14 (= 14.2.0-5),
gcc-14-aarch64-linux-gnu (= 14.2.0-5),
gcc-14-base (= 14.2.0-5),
gcc-aarch64-linux-gnu (= 4:14.1.0-2),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.23+nmu2),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-5),
libatomic1 (= 14.2.0-5),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-9),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-2),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-5),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-7),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.191-2),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfftw3-bin (= 3.3.10-1+b3),
libfftw3-dev (= 3.3.10-1+b3),
libfftw3-double3 (= 3.3.10-1+b3),
libfftw3-long3 (= 3.3.10-1+b3),
libfftw3-single3 (= 3.3.10-1+b3),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-5),
libgcc-s1 (= 14.2.0-5),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-5),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgomp1 (= 14.2.0-5),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhwasan0 (= 14.2.0-5),
libicu72 (= 72.1-5),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-5),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
liblbfgsb0 (= 3.0+dfsg.4-1+b1),
liblsan0 (= 14.2.0-5),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnsl2 (= 1.3.0-3+b2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.38t64 (= 5.38.2-5),
libpipeline1 (= 1.5.8-1),
libproc2-0 (= 2:4.0.4-6),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0~rc3-1),
libpython3.13-dev (= 3.13.0~rc3-1),
libpython3.13-minimal (= 3.13.0~rc3-1),
libpython3.13-stdlib (= 3.13.0~rc3-1),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-5),
libstdc++6 (= 14.2.0-5),
libsystemd0 (= 256.6-1),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-5),
libubsan1 (= 14.2.0-5),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.6-1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.10.12-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.38.2-5),
perl-base (= 5.38.2-5),
perl-modules-5.38 (= 5.38.2-5),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-6),
pybuild-plugin-pyproject (= 6.20240824),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-build (= 1.2.2-1),
python3-decorator (= 5.1.1-5),
python3-dev (= 3.12.6-1+debusine1),
python3-inflect (= 7.3.1-2),
python3-iniconfig (= 1.1.1-2),
python3-installer (= 0.7.0+dfsg1-3),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-joblib (= 1.3.2-3),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-numpy (= 1:1.26.4+ds-11+bootstrap1),
python3-packaging (= 24.1-1),
python3-pkg-resources (= 74.1.2-2),
python3-pluggy (= 1.5.0-1),
python3-pyproject-hooks (= 1.1.0-2),
python3-pytest (= 8.3.3-1),
python3-pytest-runner (= 2.11.1-4),
python3-scipy (= 1.13.1-5+nocheck1),
python3-setuptools (= 74.1.2-2),
python3-sklearn (= 1.4.2+dfsg-6),
python3-sklearn-lib (= 1.4.2+dfsg-6+debusine1),
python3-threadpoolctl (= 3.1.0-1),
python3-toml (= 0.10.2-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-wheel (= 0.44.0-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0~rc3-1),
python3.13-dev (= 3.13.0~rc3-1),
python3.13-minimal (= 3.13.0~rc3-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.10-2),
tar (= 1.35+dfsg-3),
tzdata (= 2024b-1),
util-linux (= 2.40.2-9),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1728082920"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-opentsne-dbgsym_1.0.2-2+bd1_arm64.deb
---------------------------------------------
new Debian package, version 2.0.
size 4712676 bytes: control archive=1056 bytes.
785 bytes, 12 lines control
1154 bytes, 11 lines md5sums
Package: python3-opentsne-dbgsym
Source: opentsne (1.0.2-2)
Version: 1.0.2-2+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian PaN Maintainers <debian-pan-maintainers@alioth-lists.debian.net>
Installed-Size: 5064
Depends: python3-opentsne (= 1.0.2-2+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-opentsne
Build-Ids: 0526e09d652b791ad7430ee2fa21a91a166116c9 3de414e46ff55a151018abf21fb552362d81fed9 4adaff030828b369f2ce9ca5c6ba460a4690382f 4d00f91e91bc328f7891f098feb382e55bcb7f7c 66d4765cd5b61194561bcea8f42714e3e61b7eb1 75024b1c608710dc4f5f7a11f3007bc8e9148824 9452f15b887dbf369e73c4ebe1ab9504df2fdae2 a55fce25465d73afaf8576fce4b1241bfa6360d6 c01fa83bdeb6965713ea6921bc3a8116f989206c dc58ad93086b7f097851b729d567c200a3f98c2c
drwxr-xr-x root/root 0 2024-10-04 23:02 ./
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drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/.build-id/94/
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drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/.build-id/a5/
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drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/.build-id/dc/
-rw-r--r-- root/root 444720 2024-10-04 23:02 ./usr/lib/debug/.build-id/dc/58ad93086b7f097851b729d567c200a3f98c2c.debug
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root 170016 2024-10-04 23:02 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-opentsne.debug
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/share/
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-10-04 23:02 ./usr/share/doc/python3-opentsne-dbgsym -> python3-opentsne
python3-opentsne_1.0.2-2+bd1_arm64.deb
--------------------------------------
new Debian package, version 2.0.
size 466320 bytes: control archive=2036 bytes.
1079 bytes, 19 lines control
3023 bytes, 30 lines md5sums
279 bytes, 12 lines * postinst #!/bin/sh
392 bytes, 12 lines * prerm #!/bin/sh
Package: python3-opentsne
Source: opentsne (1.0.2-2)
Version: 1.0.2-2+bd1
Architecture: arm64
Maintainer: Debian PaN Maintainers <debian-pan-maintainers@alioth-lists.debian.net>
Installed-Size: 2952
Depends: python3 (<< 3.14), python3 (>= 3.12~), python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.34), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 6)
Section: python
Priority: optional
Homepage: https://github.com/pavlin-policar/openTSNE
Description: t-Distributed Stochastic Neighbor Embedding algorithm
Modular Python implementation of t-Distributed Stochasitc Neighbor
Embedding (t-SNE), a popular dimensionality-reduction algorithm for
visualizing high-dimensional data sets. openTSNE incorporates the
latest improvements to the t-SNE algorithm, including the ability to
add new data points to existing embeddings, massive speed
improvements, enabling t-SNE to scale to millions of data points and
various tricks to improve global alignment of the
resulting visualizations.
drwxr-xr-x root/root 0 2024-10-04 23:02 ./
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-rw-r--r-- root/root 7826 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE-1.0.2.dist-info/METADATA
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drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/
-rw-r--r-- root/root 116 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/__init__.py
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/_matrix_mul/
-rw-r--r-- root/root 0 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/_matrix_mul/__init__.py
-rw-r--r-- root/root 202064 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/_matrix_mul/matrix_mul.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 202064 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/_matrix_mul/matrix_mul.cpython-313-aarch64-linux-gnu.so
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-rw-r--r-- root/root 466752 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/_tsne.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 47710 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/affinity.py
-rw-r--r-- root/root 3962 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/callbacks.py
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/dependencies/
-rw-r--r-- root/root 0 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/dependencies/__init__.py
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/dependencies/annoy/
-rw-r--r-- root/root 42 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/dependencies/annoy/__init__.py
-rw-r--r-- root/root 200256 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/dependencies/annoy/annoylib.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 200256 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/dependencies/annoy/annoylib.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 7606 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/initialization.py
-rw-r--r-- root/root 269016 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/kl_divergence.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 269016 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/kl_divergence.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 401 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/metrics.py
-rw-r--r-- root/root 22824 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/nearest_neighbors.py
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-rw-r--r-- root/root 269456 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/quad_tree.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 1380 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/sklearn.py
-rw-r--r-- root/root 74785 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/tsne.py
-rw-r--r-- root/root 1531 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/utils.py
-rw-r--r-- root/root 22 2024-10-04 23:02 ./usr/lib/python3/dist-packages/openTSNE/version.py
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/share/
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-04 23:02 ./usr/share/doc/python3-opentsne/
-rw-r--r-- root/root 219 2024-10-04 23:02 ./usr/share/doc/python3-opentsne/changelog.Debian.arm64.gz
-rw-r--r-- root/root 1100 2024-10-04 23:02 ./usr/share/doc/python3-opentsne/changelog.Debian.gz
-rw-r--r-- root/root 3470 2024-09-18 08:23 ./usr/share/doc/python3-opentsne/copyright
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
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I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 115916
Build-Time: 271
Distribution: sid
Host Architecture: arm64
Install-Time: 57
Job: /tmp/debusine-fetch-exec-upload-01scu9_l/opentsne_1.0.2-2.dsc
Lintian: pass
Machine Architecture: arm64
Package: opentsne
Package-Time: 373
Source-Version: 1.0.2-2
Space: 115916
Status: successful
Version: 1.0.2-2+bd1
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Finished at 2024-10-04T23:06:32Z
Build needed 00:06:13, 115916k disk space