sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-10.freexian.com
+==============================================================================+
| python-bx 0.13.0-1+bd1 (arm64) Fri, 04 Oct 2024 23:07:29 +0000 |
+==============================================================================+
Package: python-bx
Version: 0.13.0-1+bd1
Source Version: 0.13.0-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/820286/system.tar.xz to /tmp/tmp.sbuild.cjQ57TnSCj...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Chroot Setup Commands |
+------------------------------------------------------------------------------+
rm -f /etc/resolv.conf
----------------------
I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
--------------------------------------------------------------------------------
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/libpython3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/libpython3-all-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/libpython3-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/libpython3-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/libpython3-stdlib_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-all-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-all-venv_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-all_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-full_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-minimal_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-nopie_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-venv_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/2to3_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/idle_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-doc_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-examples_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-numpy-dbgsym_1.26.4+ds-11+bootstrap1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-numpy_1.26.4+ds-11+bootstrap1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/cython3-dbgsym_3.0.11+dfsg-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/cython3_3.0.11+dfsg-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-lzo-dbgsym_1.15-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-yq_6ax1y/python3-lzo_1.15-1+debusine1_arm64.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/python-bx-F2KcDp/resolver-AV6ItP' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ InRelease
Ign:1 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ InRelease
Get:2 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ Release [609 B]
Get:2 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ Release [609 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:4 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ Release.gpg
Ign:4 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ Release.gpg
Get:5 file:/build/python-bx-F2KcDp/resolver-Q8Idzn/apt_archive ./ Packages [28.8 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9878 kB]
Fetched 10.1 MB in 1s (7785 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following NEW packages will be installed:
appstream libappstream5 libatomic1 libbrotli1 libcurl3t64-gnutls
libglib2.0-0t64 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.5-0 libnghttp2-14 libnghttp3-9 libngtcp2-16
libngtcp2-crypto-gnutls8 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules-db
libssh2-1t64 libstemmer0d libxmlb2 shared-mime-info
The following packages will be upgraded:
bsdextrautils bsdutils libblkid1 libbsd0 libmount1 libsmartcols1 libuuid1
libyaml-libyaml-perl lintian login mount tzdata util-linux
13 upgraded, 24 newly installed, 0 to remove and 0 not upgraded.
Need to get 8611 kB of archives.
After this operation, 22.0 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-9 [104 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB]
Get:3 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-9 [162 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-9 [190 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-9 [135 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-9 [152 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-9 [35.5 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-9 [1176 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-9 [79.7 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 tzdata all 2024b-1 [230 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libatomic1 arm64 14.2.0-5 [10.1 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.1-1 [1410 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 shared-mime-info arm64 2.4-5 [755 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B]
Get:18 http://deb.debian.org/debian sid/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libcurl3t64-gnutls arm64 8.10.1-1 [329 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 libstemmer0d arm64 2.2.0-4+b1 [112 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libxmlb2 arm64 0.3.19-1 [58.6 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libappstream5 arm64 1.0.3-1 [207 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 appstream arm64 1.0.3-1 [466 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libbsd0 arm64 0.12.2-2 [129 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 lintian all 2.119.0 [1056 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.902.0+ds-2 [33.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 8611 kB in 0s (58.4 MB/s)
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../bsdutils_1%3a2.40.2-9_arm64.deb ...
Unpacking bsdutils (1:2.40.2-9) over (1:2.40.2-8) ...
Setting up bsdutils (1:2.40.2-9) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../bsdextrautils_2.40.2-9_arm64.deb ...
Unpacking bsdextrautils (2.40.2-9) over (2.40.2-8) ...
Preparing to unpack .../libblkid1_2.40.2-9_arm64.deb ...
Unpacking libblkid1:arm64 (2.40.2-9) over (2.40.2-8) ...
Setting up libblkid1:arm64 (2.40.2-9) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../libmount1_2.40.2-9_arm64.deb ...
Unpacking libmount1:arm64 (2.40.2-9) over (2.40.2-8) ...
Setting up libmount1:arm64 (2.40.2-9) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../libsmartcols1_2.40.2-9_arm64.deb ...
Unpacking libsmartcols1:arm64 (2.40.2-9) over (2.40.2-8) ...
Setting up libsmartcols1:arm64 (2.40.2-9) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../mount_2.40.2-9_arm64.deb ...
Unpacking mount (2.40.2-9) over (2.40.2-8) ...
Preparing to unpack .../libuuid1_2.40.2-9_arm64.deb ...
Unpacking libuuid1:arm64 (2.40.2-9) over (2.40.2-8) ...
Setting up libuuid1:arm64 (2.40.2-9) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../util-linux_2.40.2-9_arm64.deb ...
Unpacking util-linux (2.40.2-9) over (2.40.2-8) ...
Setting up util-linux (2.40.2-9) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 16560 files and directories currently installed.)
Preparing to unpack .../00-login_1%3a4.16.0-2+really2.40.2-9_arm64.deb ...
Unpacking login (1:4.16.0-2+really2.40.2-9) over (1:4.16.0-2+really2.40.2-8) ...
Preparing to unpack .../01-tzdata_2024b-1_all.deb ...
Unpacking tzdata (2024b-1) over (2024a-4) ...
Selecting previously unselected package libatomic1:arm64.
Preparing to unpack .../02-libatomic1_14.2.0-5_arm64.deb ...
Unpacking libatomic1:arm64 (14.2.0-5) ...
Selecting previously unselected package libglib2.0-0t64:arm64.
Preparing to unpack .../03-libglib2.0-0t64_2.82.1-1_arm64.deb ...
Unpacking libglib2.0-0t64:arm64 (2.82.1-1) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../04-shared-mime-info_2.4-5_arm64.deb ...
Unpacking shared-mime-info (2.4-5) ...
Selecting previously unselected package libbrotli1:arm64.
Preparing to unpack .../05-libbrotli1_1.1.0-2+b4_arm64.deb ...
Unpacking libbrotli1:arm64 (1.1.0-2+b4) ...
Selecting previously unselected package libkrb5support0:arm64.
Preparing to unpack .../06-libkrb5support0_1.21.3-3_arm64.deb ...
Unpacking libkrb5support0:arm64 (1.21.3-3) ...
Selecting previously unselected package libk5crypto3:arm64.
Preparing to unpack .../07-libk5crypto3_1.21.3-3_arm64.deb ...
Unpacking libk5crypto3:arm64 (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:arm64.
Preparing to unpack .../08-libkeyutils1_1.6.3-3_arm64.deb ...
Unpacking libkeyutils1:arm64 (1.6.3-3) ...
Selecting previously unselected package libkrb5-3:arm64.
Preparing to unpack .../09-libkrb5-3_1.21.3-3_arm64.deb ...
Unpacking libkrb5-3:arm64 (1.21.3-3) ...
Selecting previously unselected package libgssapi-krb5-2:arm64.
Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_arm64.deb ...
Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ...
Selecting previously unselected package libsasl2-modules-db:arm64.
Preparing to unpack .../11-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ...
Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ...
Selecting previously unselected package libsasl2-2:arm64.
Preparing to unpack .../12-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ...
Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ...
Selecting previously unselected package libldap-2.5-0:arm64.
Preparing to unpack .../13-libldap-2.5-0_2.5.18+dfsg-3_arm64.deb ...
Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3) ...
Selecting previously unselected package libnghttp2-14:arm64.
Preparing to unpack .../14-libnghttp2-14_1.63.0-1_arm64.deb ...
Unpacking libnghttp2-14:arm64 (1.63.0-1) ...
Selecting previously unselected package libnghttp3-9:arm64.
Preparing to unpack .../15-libnghttp3-9_1.4.0-1_arm64.deb ...
Unpacking libnghttp3-9:arm64 (1.4.0-1) ...
Selecting previously unselected package libngtcp2-16:arm64.
Preparing to unpack .../16-libngtcp2-16_1.6.0-1_arm64.deb ...
Unpacking libngtcp2-16:arm64 (1.6.0-1) ...
Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64.
Preparing to unpack .../17-libngtcp2-crypto-gnutls8_1.6.0-1_arm64.deb ...
Unpacking libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ...
Selecting previously unselected package libpsl5t64:arm64.
Preparing to unpack .../18-libpsl5t64_0.21.2-1.1_arm64.deb ...
Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
Selecting previously unselected package librtmp1:arm64.
Preparing to unpack .../19-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ...
Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ...
Selecting previously unselected package libssh2-1t64:arm64.
Preparing to unpack .../20-libssh2-1t64_1.11.0-7_arm64.deb ...
Unpacking libssh2-1t64:arm64 (1.11.0-7) ...
Selecting previously unselected package libcurl3t64-gnutls:arm64.
Preparing to unpack .../21-libcurl3t64-gnutls_8.10.1-1_arm64.deb ...
Unpacking libcurl3t64-gnutls:arm64 (8.10.1-1) ...
Selecting previously unselected package libstemmer0d:arm64.
Preparing to unpack .../22-libstemmer0d_2.2.0-4+b1_arm64.deb ...
Unpacking libstemmer0d:arm64 (2.2.0-4+b1) ...
Selecting previously unselected package libxmlb2:arm64.
Preparing to unpack .../23-libxmlb2_0.3.19-1_arm64.deb ...
Unpacking libxmlb2:arm64 (0.3.19-1) ...
Selecting previously unselected package libappstream5:arm64.
Preparing to unpack .../24-libappstream5_1.0.3-1_arm64.deb ...
Unpacking libappstream5:arm64 (1.0.3-1) ...
Selecting previously unselected package appstream.
Preparing to unpack .../25-appstream_1.0.3-1_arm64.deb ...
Unpacking appstream (1.0.3-1) ...
Preparing to unpack .../26-libbsd0_0.12.2-2_arm64.deb ...
Unpacking libbsd0:arm64 (0.12.2-2) over (0.12.2-1) ...
Preparing to unpack .../27-lintian_2.119.0_all.deb ...
Unpacking lintian (2.119.0) over (2.118.2) ...
Preparing to unpack .../28-libyaml-libyaml-perl_0.902.0+ds-2_arm64.deb ...
Unpacking libyaml-libyaml-perl (0.902.0+ds-2) over (0.902.0+ds-1) ...
Setting up libkeyutils1:arm64 (1.6.3-3) ...
Setting up bsdextrautils (2.40.2-9) ...
Setting up libbrotli1:arm64 (1.1.0-2+b4) ...
Setting up libyaml-libyaml-perl (0.902.0+ds-2) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
Setting up libnghttp2-14:arm64 (1.63.0-1) ...
Setting up libkrb5support0:arm64 (1.21.3-3) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ...
Setting up tzdata (2024b-1) ...
Current default time zone: 'Etc/UTC'
Local time is now: Fri Oct 4 23:08:02 UTC 2024.
Universal Time is now: Fri Oct 4 23:08:02 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libatomic1:arm64 (14.2.0-5) ...
Setting up libk5crypto3:arm64 (1.21.3-3) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ...
Setting up libnghttp3-9:arm64 (1.4.0-1) ...
Setting up mount (2.40.2-9) ...
Setting up libngtcp2-16:arm64 (1.6.0-1) ...
Setting up libkrb5-3:arm64 (1.21.3-3) ...
Setting up libstemmer0d:arm64 (2.2.0-4+b1) ...
Setting up libssh2-1t64:arm64 (1.11.0-7) ...
Setting up libbsd0:arm64 (0.12.2-2) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ...
Setting up login (1:4.16.0-2+really2.40.2-9) ...
Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3) ...
Setting up libglib2.0-0t64:arm64 (2.82.1-1) ...
No schema files found: doing nothing.
Setting up shared-mime-info (2.4-5) ...
Warning: program compiled against libxml 212 using older 209
Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ...
Setting up libxmlb2:arm64 (0.3.19-1) ...
Setting up libcurl3t64-gnutls:arm64 (8.10.1-1) ...
Setting up libappstream5:arm64 (1.0.3-1) ...
Setting up appstream (1.0.3-1) ...
✔ Metadata cache was updated successfully.
Setting up lintian (2.119.0) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-yq_6ax1y/python-bx_0.13.0-1.dsc exists in /tmp/debusine-fetch-exec-upload-yq_6ax1y; copying to chroot
I: NOTICE: Log filtering will replace 'build/python-bx-F2KcDp/python-bx-0.13.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-bx-F2KcDp' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, python3-setuptools, pybuild-plugin-pyproject, python3-all-dev:any, python3-lzo, python3-pyparsing, python3-pytest, python3-pytest-cython, python3-numpy, cython3, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, python3-setuptools, pybuild-plugin-pyproject, python3-all-dev:any, python3-lzo, python3-pyparsing, python3-pytest, python3-pytest-cython, python3-numpy, cython3, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [874 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [855 B]
Fetched 2338 B in 0s (214 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release [609 B]
Get:2 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release [609 B]
Get:3 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libhwasan0 libisl23 libitm1 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblsan0 libmpc3 libmpfr6
libncursesw6 libnsl2 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
libpython3.13-stdlib libstdc++-14-dev libtirpc-common libtirpc3t64 libtool
libtsan2 libubsan1 linux-libc-dev m4 media-types po-debconf
pybuild-plugin-pyproject python3 python3-all python3-all-dev
python3-autocommand python3-build python3-dev python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-lzo python3-minimal python3-more-itertools
python3-numpy python3-packaging python3-pkg-resources python3-pluggy
python3-pyparsing python3-pyproject-hooks python3-pytest
python3-pytest-cython python3-setuptools python3-toml python3-typeguard
python3-typing-extensions python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv python3-pip
python-build-doc python-installer-doc gfortran python-numpy-doc
python-pyparsing-doc python-setuptools-doc python3.12-venv python3.12-doc
binfmt-support python3.13-venv python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libhwasan0 libisl23 libitm1 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblsan0 libmpc3 libmpfr6
libncursesw6 libnsl2 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
libpython3.13-stdlib libstdc++-14-dev libtirpc-common libtirpc3t64 libtool
libtsan2 libubsan1 linux-libc-dev m4 media-types po-debconf
pybuild-plugin-pyproject python3 python3-all python3-all-dev
python3-autocommand python3-build python3-dev python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-lzo python3-minimal python3-more-itertools
python3-numpy python3-packaging python3-pkg-resources python3-pluggy
python3-pyparsing python3-pyproject-hooks python3-pytest
python3-pytest-cython python3-setuptools python3-toml python3-typeguard
python3-typing-extensions python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded.
Need to get 92.1 MB/98.8 MB of archives.
After this operation, 422 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [980 B]
Get:2 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:6 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:7 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:10 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:11 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:12 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3-lzo 1.15-1+debusine1 [9332 B]
Get:13 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:15 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0~rc3-1 [849 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0~rc3-1 [1835 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.10.12-1 [2400 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-5 [9161 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-5 [1280 B]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2 [4792 B]
Get:41 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.1.0-2 [1572 B]
Get:42 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-5 [42.0 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-5 [24.2 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-5 [2578 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-5 [1162 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-5 [2385 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-5 [1040 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-5 [1442 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-5 [2363 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-5 [17.7 MB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-5 [513 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2 [1440 B]
Get:53 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.1.0-2 [5136 B]
Get:54 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-5 [2263 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-5 [10.1 MB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-5 [19.7 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2 [1200 B]
Get:58 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.1.0-2 [1328 B]
Get:59 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.10 [4516 B]
Get:60 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:65 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.191-2 [188 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-5 [361 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0~rc3-1 [1920 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0~rc3-1 [1959 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0~rc3-1 [4668 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0~rc3-1 [730 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0~rc3-1 [504 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 python3-pytest-cython all 0.1.1-1 [8068 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 92.1 MB in 1s (106 MB/s)
Selecting previously unselected package libpython3.12-minimal:arm64.
(Reading database ... 16920 files and directories currently installed.)
Preparing to unpack .../libpython3.12-minimal_3.12.7-1_arm64.deb ...
Unpacking libpython3.12-minimal:arm64 (3.12.7-1) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.6.3-1) ...
Selecting previously unselected package python3.12-minimal.
Preparing to unpack .../python3.12-minimal_3.12.7-1_arm64.deb ...
Unpacking python3.12-minimal (3.12.7-1) ...
Setting up libpython3.12-minimal:arm64 (3.12.7-1) ...
Setting up libexpat1:arm64 (2.6.3-1) ...
Setting up python3.12-minimal (3.12.7-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 17240 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.12.6-1+debusine1_arm64.deb ...
Unpacking python3-minimal (3.12.6-1+debusine1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package libncursesw6:arm64.
Preparing to unpack .../2-libncursesw6_6.5-2_arm64.deb ...
Unpacking libncursesw6:arm64 (6.5-2) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../3-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:arm64.
Preparing to unpack .../4-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ...
Selecting previously unselected package libnsl2:arm64.
Preparing to unpack .../5-libnsl2_1.3.0-3+b2_arm64.deb ...
Unpacking libnsl2:arm64 (1.3.0-3+b2) ...
Selecting previously unselected package libpython3.12-stdlib:arm64.
Preparing to unpack .../6-libpython3.12-stdlib_3.12.7-1_arm64.deb ...
Unpacking libpython3.12-stdlib:arm64 (3.12.7-1) ...
Selecting previously unselected package python3.12.
Preparing to unpack .../7-python3.12_3.12.7-1_arm64.deb ...
Unpacking python3.12 (3.12.7-1) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../8-libpython3-stdlib_3.12.6-1+debusine1_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
Setting up python3-minimal (3.12.6-1+debusine1) ...
Selecting previously unselected package python3.
(Reading database ... 17712 files and directories currently installed.)
Preparing to unpack .../00-python3_3.12.6-1+debusine1_arm64.deb ...
Unpacking python3 (3.12.6-1+debusine1) ...
Selecting previously unselected package libpython3.13-minimal:arm64.
Preparing to unpack .../01-libpython3.13-minimal_3.13.0~rc3-1_arm64.deb ...
Unpacking libpython3.13-minimal:arm64 (3.13.0~rc3-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../02-python3.13-minimal_3.13.0~rc3-1_arm64.deb ...
Unpacking python3.13-minimal (3.13.0~rc3-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../03-m4_1.4.19-4_arm64.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../04-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../05-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../06-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../07-autopoint_0.22.5-2_all.deb ...
Unpacking autopoint (0.22.5-2) ...
Selecting previously unselected package libc-dev-bin.
Preparing to unpack .../08-libc-dev-bin_2.40-3_arm64.deb ...
Unpacking libc-dev-bin (2.40-3) ...
Selecting previously unselected package linux-libc-dev.
Preparing to unpack .../09-linux-libc-dev_6.10.12-1_all.deb ...
Unpacking linux-libc-dev (6.10.12-1) ...
Selecting previously unselected package libcrypt-dev:arm64.
Preparing to unpack .../10-libcrypt-dev_1%3a4.4.36-5_arm64.deb ...
Unpacking libcrypt-dev:arm64 (1:4.4.36-5) ...
Selecting previously unselected package rpcsvc-proto.
Preparing to unpack .../11-rpcsvc-proto_1.4.3-1_arm64.deb ...
Unpacking rpcsvc-proto (1.4.3-1) ...
Selecting previously unselected package libc6-dev:arm64.
Preparing to unpack .../12-libc6-dev_2.40-3_arm64.deb ...
Unpacking libc6-dev:arm64 (2.40-3) ...
Selecting previously unselected package libisl23:arm64.
Preparing to unpack .../13-libisl23_0.27-1_arm64.deb ...
Unpacking libisl23:arm64 (0.27-1) ...
Selecting previously unselected package libmpfr6:arm64.
Preparing to unpack .../14-libmpfr6_4.2.1-1+b1_arm64.deb ...
Unpacking libmpfr6:arm64 (4.2.1-1+b1) ...
Selecting previously unselected package libmpc3:arm64.
Preparing to unpack .../15-libmpc3_1.3.1-1+b2_arm64.deb ...
Unpacking libmpc3:arm64 (1.3.1-1+b2) ...
Selecting previously unselected package cpp-14-aarch64-linux-gnu.
Preparing to unpack .../16-cpp-14-aarch64-linux-gnu_14.2.0-5_arm64.deb ...
Unpacking cpp-14-aarch64-linux-gnu (14.2.0-5) ...
Selecting previously unselected package cpp-14.
Preparing to unpack .../17-cpp-14_14.2.0-5_arm64.deb ...
Unpacking cpp-14 (14.2.0-5) ...
Selecting previously unselected package cpp-aarch64-linux-gnu.
Preparing to unpack .../18-cpp-aarch64-linux-gnu_4%3a14.1.0-2_arm64.deb ...
Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2) ...
Selecting previously unselected package cpp.
Preparing to unpack .../19-cpp_4%3a14.1.0-2_arm64.deb ...
Unpacking cpp (4:14.1.0-2) ...
Selecting previously unselected package libcc1-0:arm64.
Preparing to unpack .../20-libcc1-0_14.2.0-5_arm64.deb ...
Unpacking libcc1-0:arm64 (14.2.0-5) ...
Selecting previously unselected package libitm1:arm64.
Preparing to unpack .../21-libitm1_14.2.0-5_arm64.deb ...
Unpacking libitm1:arm64 (14.2.0-5) ...
Selecting previously unselected package libasan8:arm64.
Preparing to unpack .../22-libasan8_14.2.0-5_arm64.deb ...
Unpacking libasan8:arm64 (14.2.0-5) ...
Selecting previously unselected package liblsan0:arm64.
Preparing to unpack .../23-liblsan0_14.2.0-5_arm64.deb ...
Unpacking liblsan0:arm64 (14.2.0-5) ...
Selecting previously unselected package libtsan2:arm64.
Preparing to unpack .../24-libtsan2_14.2.0-5_arm64.deb ...
Unpacking libtsan2:arm64 (14.2.0-5) ...
Selecting previously unselected package libubsan1:arm64.
Preparing to unpack .../25-libubsan1_14.2.0-5_arm64.deb ...
Unpacking libubsan1:arm64 (14.2.0-5) ...
Selecting previously unselected package libhwasan0:arm64.
Preparing to unpack .../26-libhwasan0_14.2.0-5_arm64.deb ...
Unpacking libhwasan0:arm64 (14.2.0-5) ...
Selecting previously unselected package libgcc-14-dev:arm64.
Preparing to unpack .../27-libgcc-14-dev_14.2.0-5_arm64.deb ...
Unpacking libgcc-14-dev:arm64 (14.2.0-5) ...
Selecting previously unselected package gcc-14-aarch64-linux-gnu.
Preparing to unpack .../28-gcc-14-aarch64-linux-gnu_14.2.0-5_arm64.deb ...
Unpacking gcc-14-aarch64-linux-gnu (14.2.0-5) ...
Selecting previously unselected package gcc-14.
Preparing to unpack .../29-gcc-14_14.2.0-5_arm64.deb ...
Unpacking gcc-14 (14.2.0-5) ...
Selecting previously unselected package gcc-aarch64-linux-gnu.
Preparing to unpack .../30-gcc-aarch64-linux-gnu_4%3a14.1.0-2_arm64.deb ...
Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2) ...
Selecting previously unselected package gcc.
Preparing to unpack .../31-gcc_4%3a14.1.0-2_arm64.deb ...
Unpacking gcc (4:14.1.0-2) ...
Selecting previously unselected package libstdc++-14-dev:arm64.
Preparing to unpack .../32-libstdc++-14-dev_14.2.0-5_arm64.deb ...
Unpacking libstdc++-14-dev:arm64 (14.2.0-5) ...
Selecting previously unselected package g++-14-aarch64-linux-gnu.
Preparing to unpack .../33-g++-14-aarch64-linux-gnu_14.2.0-5_arm64.deb ...
Unpacking g++-14-aarch64-linux-gnu (14.2.0-5) ...
Selecting previously unselected package g++-14.
Preparing to unpack .../34-g++-14_14.2.0-5_arm64.deb ...
Unpacking g++-14 (14.2.0-5) ...
Selecting previously unselected package g++-aarch64-linux-gnu.
Preparing to unpack .../35-g++-aarch64-linux-gnu_4%3a14.1.0-2_arm64.deb ...
Unpacking g++-aarch64-linux-gnu (4:14.1.0-2) ...
Selecting previously unselected package g++.
Preparing to unpack .../36-g++_4%3a14.1.0-2_arm64.deb ...
Unpacking g++ (4:14.1.0-2) ...
Selecting previously unselected package build-essential.
Preparing to unpack .../37-build-essential_12.10_arm64.deb ...
Unpacking build-essential (12.10) ...
Selecting previously unselected package cython3.
Preparing to unpack .../38-cython3_3.0.11+dfsg-1+debusine1_arm64.deb ...
Unpacking cython3 (3.0.11+dfsg-1+debusine1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../39-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../40-libtool_2.4.7-7_all.deb ...
Unpacking libtool (2.4.7-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../41-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../43-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../44-libelf1t64_0.191-2_arm64.deb ...
Unpacking libelf1t64:arm64 (0.191-2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../45-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../47-debhelper_13.20_all.deb ...
Unpacking debhelper (13.20) ...
Selecting previously unselected package python3-autocommand.
Preparing to unpack .../48-python3-autocommand_2.2.2-3_all.deb ...
Unpacking python3-autocommand (2.2.2-3) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../49-python3-more-itertools_10.5.0-1_all.deb ...
Unpacking python3-more-itertools (10.5.0-1) ...
Selecting previously unselected package python3-typing-extensions.
Preparing to unpack .../50-python3-typing-extensions_4.12.2-2_all.deb ...
Unpacking python3-typing-extensions (4.12.2-2) ...
Selecting previously unselected package python3-typeguard.
Preparing to unpack .../51-python3-typeguard_4.3.0-1_all.deb ...
Unpacking python3-typeguard (4.3.0-1) ...
Selecting previously unselected package python3-inflect.
Preparing to unpack .../52-python3-inflect_7.3.1-2_all.deb ...
Unpacking python3-inflect (7.3.1-2) ...
Selecting previously unselected package python3-jaraco.context.
Preparing to unpack .../53-python3-jaraco.context_6.0.0-1_all.deb ...
Unpacking python3-jaraco.context (6.0.0-1) ...
Selecting previously unselected package python3-jaraco.functools.
Preparing to unpack .../54-python3-jaraco.functools_4.1.0-1_all.deb ...
Unpacking python3-jaraco.functools (4.1.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../55-python3-pkg-resources_74.1.2-2_all.deb ...
Unpacking python3-pkg-resources (74.1.2-2) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../56-python3-zipp_3.20.2-1_all.deb ...
Unpacking python3-zipp (3.20.2-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../57-python3-setuptools_74.1.2-2_all.deb ...
Unpacking python3-setuptools (74.1.2-2) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../58-dh-python_6.20240824_all.deb ...
Unpacking dh-python (6.20240824) ...
Selecting previously unselected package dumb-init.
Preparing to unpack .../59-dumb-init_1.2.5-3_arm64.deb ...
Unpacking dumb-init (1.2.5-3) ...
Selecting previously unselected package libfakeroot:arm64.
Preparing to unpack .../60-libfakeroot_1.36-1_arm64.deb ...
Unpacking libfakeroot:arm64 (1.36-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../61-fakeroot_1.36-1_arm64.deb ...
Unpacking fakeroot (1.36-1) ...
Selecting previously unselected package libblas3:arm64.
Preparing to unpack .../62-libblas3_3.12.0-3_arm64.deb ...
Unpacking libblas3:arm64 (3.12.0-3) ...
Selecting previously unselected package libexpat1-dev:arm64.
Preparing to unpack .../63-libexpat1-dev_2.6.3-1_arm64.deb ...
Unpacking libexpat1-dev:arm64 (2.6.3-1) ...
Selecting previously unselected package libgfortran5:arm64.
Preparing to unpack .../64-libgfortran5_14.2.0-5_arm64.deb ...
Unpacking libgfortran5:arm64 (14.2.0-5) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../65-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../66-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../67-libjs-sphinxdoc_7.4.7-3_all.deb ...
Unpacking libjs-sphinxdoc (7.4.7-3) ...
Selecting previously unselected package liblapack3:arm64.
Preparing to unpack .../68-liblapack3_3.12.0-3_arm64.deb ...
Unpacking liblapack3:arm64 (3.12.0-3) ...
Selecting previously unselected package libpython3.12t64:arm64.
Preparing to unpack .../69-libpython3.12t64_3.12.7-1_arm64.deb ...
Unpacking libpython3.12t64:arm64 (3.12.7-1) ...
Selecting previously unselected package zlib1g-dev:arm64.
Preparing to unpack .../70-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ...
Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ...
Selecting previously unselected package libpython3.12-dev:arm64.
Preparing to unpack .../71-libpython3.12-dev_3.12.7-1_arm64.deb ...
Unpacking libpython3.12-dev:arm64 (3.12.7-1) ...
Selecting previously unselected package libpython3-dev:arm64.
Preparing to unpack .../72-libpython3-dev_3.12.6-1+debusine1_arm64.deb ...
Unpacking libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Selecting previously unselected package libpython3.13-stdlib:arm64.
Preparing to unpack .../73-libpython3.13-stdlib_3.13.0~rc3-1_arm64.deb ...
Unpacking libpython3.13-stdlib:arm64 (3.13.0~rc3-1) ...
Selecting previously unselected package libpython3.13:arm64.
Preparing to unpack .../74-libpython3.13_3.13.0~rc3-1_arm64.deb ...
Unpacking libpython3.13:arm64 (3.13.0~rc3-1) ...
Selecting previously unselected package libpython3.13-dev:arm64.
Preparing to unpack .../75-libpython3.13-dev_3.13.0~rc3-1_arm64.deb ...
Unpacking libpython3.13-dev:arm64 (3.13.0~rc3-1) ...
Selecting previously unselected package libpython3-all-dev:arm64.
Preparing to unpack .../76-libpython3-all-dev_3.12.6-1+debusine1_arm64.deb ...
Unpacking libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../77-python3-packaging_24.1-1_all.deb ...
Unpacking python3-packaging (24.1-1) ...
Selecting previously unselected package python3-pyproject-hooks.
Preparing to unpack .../78-python3-pyproject-hooks_1.1.0-2_all.deb ...
Unpacking python3-pyproject-hooks (1.1.0-2) ...
Selecting previously unselected package python3-toml.
Preparing to unpack .../79-python3-toml_0.10.2-1_all.deb ...
Unpacking python3-toml (0.10.2-1) ...
Selecting previously unselected package python3-wheel.
Preparing to unpack .../80-python3-wheel_0.44.0-2_all.deb ...
Unpacking python3-wheel (0.44.0-2) ...
Selecting previously unselected package python3-build.
Preparing to unpack .../81-python3-build_1.2.2-1_all.deb ...
Unpacking python3-build (1.2.2-1) ...
Selecting previously unselected package python3-installer.
Preparing to unpack .../82-python3-installer_0.7.0+dfsg1-3_all.deb ...
Unpacking python3-installer (0.7.0+dfsg1-3) ...
Selecting previously unselected package pybuild-plugin-pyproject.
Preparing to unpack .../83-pybuild-plugin-pyproject_6.20240824_all.deb ...
Unpacking pybuild-plugin-pyproject (6.20240824) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../84-python3.13_3.13.0~rc3-1_arm64.deb ...
Unpacking python3.13 (3.13.0~rc3-1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../85-python3-all_3.12.6-1+debusine1_arm64.deb ...
Unpacking python3-all (3.12.6-1+debusine1) ...
Selecting previously unselected package python3.12-dev.
Preparing to unpack .../86-python3.12-dev_3.12.7-1_arm64.deb ...
Unpacking python3.12-dev (3.12.7-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../87-python3-dev_3.12.6-1+debusine1_arm64.deb ...
Unpacking python3-dev (3.12.6-1+debusine1) ...
Selecting previously unselected package python3.13-dev.
Preparing to unpack .../88-python3.13-dev_3.13.0~rc3-1_arm64.deb ...
Unpacking python3.13-dev (3.13.0~rc3-1) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../89-python3-all-dev_3.12.6-1+debusine1_arm64.deb ...
Unpacking python3-all-dev (3.12.6-1+debusine1) ...
Selecting previously unselected package python3-iniconfig.
Preparing to unpack .../90-python3-iniconfig_1.1.1-2_all.deb ...
Unpacking python3-iniconfig (1.1.1-2) ...
Selecting previously unselected package python3-lzo:arm64.
Preparing to unpack .../91-python3-lzo_1.15-1+debusine1_arm64.deb ...
Unpacking python3-lzo:arm64 (1.15-1+debusine1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../92-python3-numpy_1.26.4+ds-11+bootstrap1_arm64.deb ...
Unpacking python3-numpy (1:1.26.4+ds-11+bootstrap1) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../93-python3-pluggy_1.5.0-1_all.deb ...
Unpacking python3-pluggy (1.5.0-1) ...
Selecting previously unselected package python3-pyparsing.
Preparing to unpack .../94-python3-pyparsing_3.1.2-1_all.deb ...
Unpacking python3-pyparsing (3.1.2-1) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../95-python3-pytest_8.3.3-1_all.deb ...
Unpacking python3-pytest (8.3.3-1) ...
Selecting previously unselected package python3-pytest-cython.
Preparing to unpack .../96-python3-pytest-cython_0.1.1-1_all.deb ...
Unpacking python3-pytest-cython (0.1.1-1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../97-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up media-types (10.1.0) ...
Setting up dumb-init (1.2.5-3) ...
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libdebhelper-perl (13.20) ...
Setting up linux-libc-dev (6.10.12-1) ...
Setting up m4 (1.4.19-4) ...
Setting up libfakeroot:arm64 (1.36-1) ...
Setting up libelf1t64:arm64 (0.191-2) ...
Setting up fakeroot (1.36-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up libpython3.13-minimal:arm64 (3.13.0~rc3-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:arm64 (3.12.0-3) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up rpcsvc-proto (1.4.3-1) ...
Setting up libmpfr6:arm64 (4.2.1-1+b1) ...
Setting up libmpc3:arm64 (1.3.1-1+b2) ...
Setting up autopoint (0.22.5-2) ...
Setting up libncursesw6:arm64 (6.5-2) ...
Setting up libgfortran5:arm64 (14.2.0-5) ...
Setting up autoconf (2.72-3) ...
Setting up libubsan1:arm64 (14.2.0-5) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up libhwasan0:arm64 (14.2.0-5) ...
Setting up libcrypt-dev:arm64 (1:4.4.36-5) ...
Setting up libasan8:arm64 (14.2.0-5) ...
Setting up python3.13-minimal (3.13.0~rc3-1) ...
Setting up libtsan2:arm64 (14.2.0-5) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libisl23:arm64 (0.27-1) ...
Setting up libc-dev-bin (2.40-3) ...
Setting up libpython3.13-stdlib:arm64 (3.13.0~rc3-1) ...
Setting up libcc1-0:arm64 (14.2.0-5) ...
Setting up liblsan0:arm64 (14.2.0-5) ...
Setting up libitm1:arm64 (14.2.0-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up libpython3.13:arm64 (3.13.0~rc3-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up liblapack3:arm64 (3.12.0-3) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ...
Setting up python3.13 (3.13.0~rc3-1) ...
Setting up libjs-sphinxdoc (7.4.7-3) ...
Setting up cpp-14-aarch64-linux-gnu (14.2.0-5) ...
Setting up libnsl2:arm64 (1.3.0-3+b2) ...
Setting up libc6-dev:arm64 (2.40-3) ...
Setting up libgcc-14-dev:arm64 (14.2.0-5) ...
Setting up libstdc++-14-dev:arm64 (14.2.0-5) ...
Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ...
Setting up python3.12 (3.12.7-1) ...
Setting up libpython3.12t64:arm64 (3.12.7-1) ...
Setting up cpp-aarch64-linux-gnu (4:14.1.0-2) ...
Setting up libexpat1-dev:arm64 (2.6.3-1) ...
Setting up cpp-14 (14.2.0-5) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ...
Setting up cpp (4:14.1.0-2) ...
Setting up gcc-14-aarch64-linux-gnu (14.2.0-5) ...
Setting up libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
Setting up gcc-aarch64-linux-gnu (4:14.1.0-2) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-5) ...
Setting up python3 (3.12.6-1+debusine1) ...
Setting up libpython3.12-dev:arm64 (3.12.7-1) ...
Setting up python3-zipp (3.20.2-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up python3-wheel (0.44.0-2) ...
Setting up gcc-14 (14.2.0-5) ...
Setting up python3-packaging (24.1-1) ...
Setting up python3-pyproject-hooks (1.1.0-2) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up libpython3.13-dev:arm64 (3.13.0~rc3-1) ...
Setting up python3.12-dev (3.12.7-1) ...
Setting up cython3 (3.0.11+dfsg-1+debusine1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3-installer (0.7.0+dfsg1-3) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up g++-aarch64-linux-gnu (4:14.1.0-2) ...
Setting up g++-14 (14.2.0-5) ...
Setting up python3-build (1.2.2-1) ...
Setting up python3-lzo:arm64 (1.15-1+debusine1) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3.13-dev (3.13.0~rc3-1) ...
Setting up python3-pytest (8.3.3-1) ...
Setting up python3-typeguard (4.3.0-1) ...
Setting up python3-all (3.12.6-1+debusine1) ...
Setting up gcc (4:14.1.0-2) ...
Setting up dh-autoreconf (20) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-dev (3.12.6-1+debusine1) ...
Setting up g++ (4:14.1.0-2) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.10) ...
Setting up python3-pkg-resources (74.1.2-2) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (74.1.2-2) ...
Setting up python3-pytest-cython (0.1.1-1) ...
Setting up debhelper (13.20) ...
Setting up python3-numpy (1:1.26.4+ds-11+bootstrap1) ...
Setting up dh-python (6.20240824) ...
Setting up pybuild-plugin-pyproject (6.20240824) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-5 gcc-14_14.2.0-5 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 linux-libc-dev_6.10.12-1
Package versions: appstream_1.0.3-1 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.10 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.2.0-5 cpp-14-aarch64-linux-gnu_14.2.0-5 cpp-aarch64-linux-gnu_4:14.1.0-2 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-14_14.2.0-5 g++-14-aarch64-linux-gnu_14.2.0-5 g++-aarch64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-14_14.2.0-5 gcc-14-aarch64-linux-gnu_14.2.0-5 gcc-14-base_14.2.0-5 gcc-aarch64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gpg_2.2.44-1 gpgconf_2.2.44-1 gpgv_2.2.44-1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 iso-codes_4.17.0-1 libacl1_2.3.2-2 libaliased-perl_0.34-3 libappstream5_1.0.3-1 libapt-pkg-perl_0.1.40+b5 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-5 libassuan9_3.0.1-2 libatomic1_14.2.0-5 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libb-hooks-endofscope-perl_0.28-1 libb-hooks-op-check-perl_0.22-3+b1 libberkeleydb-perl_0.64-2+b3 libbinutils_2.43.1-5 libblas3_3.12.0-3 libblkid1_2.40.2-9 libbrotli1_1.1.0-2+b4 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-dev_2.40-3 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.2.0-5 libcgi-pm-perl_4.66-1 libclass-data-inheritable-perl_0.08-3 libclass-inspector-perl_1.36-3 libclass-method-modifiers-perl_2.15-1 libclass-xsaccessor-perl_1.19-4+b3 libclone-perl_0.47-1 libcom-err2_1.47.1-1 libconfig-tiny-perl_2.30-1 libconst-fast-perl_0.014-2 libcpanel-json-xs-perl_4.38-1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libcurl3t64-gnutls_8.10.1-1 libdata-dpath-perl_0.59-1 libdata-messagepack-perl_1.02-1+b3 libdata-optlist-perl_0.114-1 libdata-validate-domain-perl_0.15-1 libdata-validate-ip-perl_0.31-1 libdata-validate-uri-perl_0.07-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdevel-callchecker-perl_0.009-1 libdevel-size-perl_0.84-1 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.11 libdynaloader-functions-perl_0.004-1 libelf1t64_0.191-2 libemail-address-xs-perl_1.05-1+b3 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.3-1 libexpat1-dev_2.6.3-1 libext2fs2t64_1.47.1-1 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-basedir-perl_0.09-2 libfile-find-rule-perl_0.34-3 libfile-listing-perl_6.16-1 libfile-sharedir-perl_1.118-3 libfile-stripnondeterminism-perl_1.14.0-1 libfont-ttf-perl_1.06-2 libgcc-14-dev_14.2.0-5 libgcc-s1_14.2.0-5 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-5 libglib2.0-0t64_2.82.1-1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-5 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1 libhtml-form-perl_6.11-1 libhtml-html5-entities-perl_0.004-3 libhtml-parser-perl_3.83-1 libhtml-tagset-perl_3.24-1 libhtml-tokeparser-simple-perl_3.16-4 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-5 libicu72_72.1-5 libidn2-0_2.3.7-2 libimport-into-perl_1.002005-2 libio-html-perl_1.004-3 libio-interactive-perl_1.025-1 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libipc-run3-perl_0.049-1 libipc-system-simple-perl_1.30-2 libisl23_0.27-1 libiterator-perl_0.03+ds1-2 libiterator-util-perl_0.02+ds1-2 libitm1_14.2.0-5 libjansson4_2.14-2+b2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.4.7-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-maybexs-perl_1.004008-1 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 liblapack3_3.12.0-3 libldap-2.5-0_2.5.18+dfsg-3 liblist-compare-perl_0.55-2 liblist-someutils-perl_0.59-1 liblist-utilsby-perl_0.12-2 liblsan0_14.2.0-5 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz1_1.15~pre1-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 liblzo2-2_2.10-3 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmarkdown2_2.2.7-2+b1 libmd0_1.1.0-2 libmldbm-perl_2.05-4 libmodule-implementation-perl_0.09-2 libmodule-runtime-perl_0.016-2 libmoo-perl_2.005005-1 libmoox-aliases-perl_0.001006-2 libmount1_2.40.2-9 libmouse-perl_2.5.11-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnamespace-clean-perl_0.27-2 libncursesw6_6.5-2 libnet-domain-tld-perl_1.75-4 libnet-http-perl_6.23-1 libnet-ipv6addr-perl_1.02-1 libnet-netmask-perl_2.0002-2 libnet-ssleay-perl_1.94-1+b1 libnetaddr-ip-perl_4.079+dfsg-2+b3 libnettle8t64_3.10-1 libnghttp2-14_1.63.0-1 libnghttp3-9_1.4.0-1 libngtcp2-16_1.6.0-1 libngtcp2-crypto-gnutls8_1.6.0-1 libnsl2_1.3.0-3+b2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.5-2 libpackage-stash-perl_0.40-1 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libparams-classify-perl_0.015-2+b3 libparams-util-perl_1.102-3 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperlio-gzip-perl_0.20-1+b3 libperlio-utf8-strict-perl_0.010-1+b2 libpipeline1_1.5.8-1 libproc-processtable-perl_0.636-1+b2 libpsl5t64_0.21.2-1.1 libpython3-all-dev_3.12.6-1+debusine1 libpython3-dev_3.12.6-1+debusine1 libpython3-stdlib_3.12.6-1+debusine1 libpython3.12-dev_3.12.7-1 libpython3.12-minimal_3.12.7-1 libpython3.12-stdlib_3.12.7-1 libpython3.12t64_3.12.7-1 libpython3.13_3.13.0~rc3-1 libpython3.13-dev_3.13.0~rc3-1 libpython3.13-minimal_3.13.0~rc3-1 libpython3.13-stdlib_3.13.0~rc3-1 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b2 libsereal-encoder-perl_5.004+ds-1+b2 libsframe1_2.43.1-5 libsmartcols1_2.40.2-9 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1 libssh2-1t64_1.11.0-7 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-5 libstdc++6_14.2.0-5 libstemmer0d_2.2.0-4+b1 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b2 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b2 libsub-quote-perl_2.006008-1 libsyntax-keyword-try-perl_0.30-1 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libterm-readkey-perl_2.38-2+b3 libtext-glob-perl_0.11-3 libtext-levenshteinxs-perl_0.03-5+b3 libtext-markdown-discount-perl_0.16-1+b2 libtext-xslate-perl_3.5.9-2 libtime-duration-perl_1.21-2 libtime-moment-perl_0.44-2+b3 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtool_2.4.7-7 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-5 libubsan1_14.2.0-5 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunicode-utf8-perl_0.62-2+b2 libunistring5_1.2-1 liburi-perl_5.29-1 libuuid1_2.40.2-9 libvariable-magic-perl_0.64-1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxmlb2_0.3.19-1 libxs-parse-keyword-perl_0.46-1 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-2 libzstd1_1.5.6+dfsg-1 lintian_2.119.0 linux-libc-dev_6.10.12-1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-9 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 pybuild-plugin-pyproject_6.20240824 python3_3.12.6-1+debusine1 python3-all_3.12.6-1+debusine1 python3-all-dev_3.12.6-1+debusine1 python3-autocommand_2.2.2-3 python3-build_1.2.2-1 python3-dev_3.12.6-1+debusine1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-installer_0.7.0+dfsg1-3 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-lzo_1.15-1+debusine1 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-numpy_1:1.26.4+ds-11+bootstrap1 python3-packaging_24.1-1 python3-pkg-resources_74.1.2-2 python3-pluggy_1.5.0-1 python3-pyparsing_3.1.2-1 python3-pyproject-hooks_1.1.0-2 python3-pytest_8.3.3-1 python3-pytest-cython_0.1.1-1 python3-setuptools_74.1.2-2 python3-toml_0.10.2-1 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-wheel_0.44.0-2 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.13_3.13.0~rc3-1 python3.13-dev_3.13.0~rc3-1 python3.13-minimal_3.13.0~rc3-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5 sysvinit-utils_3.10-2 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024b-1 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-bx
Binary: python3-bx
Architecture: any
Version: 0.13.0-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Michael R. Crusoe <crusoe@debian.org>
Homepage: https://github.com/bxlab/bx-python
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-bx
Vcs-Git: https://salsa.debian.org/med-team/python-bx.git
Testsuite: autopkgtest-pkg-pybuild
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, python3-setuptools, pybuild-plugin-pyproject, python3-all-dev:any, python3-lzo, python3-pyparsing <!nocheck>, python3-pytest <!nocheck>, python3-pytest-cython <!nocheck>, python3-numpy <!nocheck>, cython3
Package-List:
python3-bx deb python optional arch=any
Checksums-Sha1:
bb4f1db8e7b49d900539bb64d9ab0ad5f4c43d32 1611987 python-bx_0.13.0.orig.tar.gz
4808d7a9e143f7f499919386c5f588e03abb6e3a 13776 python-bx_0.13.0-1.debian.tar.xz
Checksums-Sha256:
90016460f4799758dc2891cf3209fbbbe41c9e7221a49821d958089c47bbbe33 1611987 python-bx_0.13.0.orig.tar.gz
d5fe0a9a7be30de674e37179ab793f79d3bad9a8605912c2c0dcbb760d68db44 13776 python-bx_0.13.0-1.debian.tar.xz
Files:
f1b5b00c996f8a4ff38794ab99b67ccf 1611987 python-bx_0.13.0.orig.tar.gz
e8f33be59957a3d3c129d93dd9d2f56c 13776 python-bx_0.13.0-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=IjBM
-----END PGP SIGNATURE-----
gpgv: Signature made Sun Sep 22 12:26:19 2024 UTC
gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
gpgv: issuer "tchet@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting python-bx in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-bx_0.13.0.orig.tar.gz
dpkg-source: info: unpacking python-bx_0.13.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying shebang.patch
dpkg-source: info: applying fix_BIN_OFFSETS_MAX
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.13.0-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package python-bx
dpkg-buildpackage: info: source version 0.13.0-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f
grep -rli "Generated by Cython" lib/ | xargs -r rm
rm -rf lib/bx_python.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-cpython-313
creating build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/wiggle.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/binned_array.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/interval_index_file_tests.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/__init__.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/bitset_builders.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/gene_reader.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/seqmapping_tests.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/bitset_utils.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/interval_index_file.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/binned_array_tests.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/seqmapping.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/bitset_tests.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/wiggle_tests.py -> build/lib.linux-aarch64-cpython-313/bx
copying lib/bx/filter.py -> build/lib.linux-aarch64-cpython-313/bx
creating build/lib.linux-aarch64-cpython-313/bx_extras
copying lib/bx_extras/fpconst_tests.py -> build/lib.linux-aarch64-cpython-313/bx_extras
copying lib/bx_extras/pstat.py -> build/lib.linux-aarch64-cpython-313/bx_extras
copying lib/bx_extras/stats.py -> build/lib.linux-aarch64-cpython-313/bx_extras
copying lib/bx_extras/__init__.py -> build/lib.linux-aarch64-cpython-313/bx_extras
copying lib/bx_extras/lrucache.py -> build/lib.linux-aarch64-cpython-313/bx_extras
copying lib/bx_extras/fpconst.py -> build/lib.linux-aarch64-cpython-313/bx_extras
creating build/lib.linux-aarch64-cpython-313/bx/intervals
copying lib/bx/intervals/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/intervals
copying lib/bx/intervals/random_intervals.py -> build/lib.linux-aarch64-cpython-313/bx/intervals
copying lib/bx/intervals/cluster_tests.py -> build/lib.linux-aarch64-cpython-313/bx/intervals
copying lib/bx/intervals/intersection_tests.py -> build/lib.linux-aarch64-cpython-313/bx/intervals
copying lib/bx/intervals/io.py -> build/lib.linux-aarch64-cpython-313/bx/intervals
creating build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/pwm_score_maf.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/maf_select_motifs.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/pwm_tests.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/position_weight_matrix.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/pwm_score_positions.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.linux-aarch64-cpython-313/bx/pwm
creating build/lib.linux-aarch64-cpython-313/bx/intseq
copying lib/bx/intseq/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/intseq
creating build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/axt.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/lav.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/epo_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/score_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/score.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/core.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/lav_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/maf.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/maf_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align
copying lib/bx/align/epo.py -> build/lib.linux-aarch64-cpython-313/bx/align
creating build/lib.linux-aarch64-cpython-313/bx/cookbook
copying lib/bx/cookbook/doc_optparse.py -> build/lib.linux-aarch64-cpython-313/bx/cookbook
copying lib/bx/cookbook/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/cookbook
copying lib/bx/cookbook/attribute.py -> build/lib.linux-aarch64-cpython-313/bx/cookbook
creating build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/bgzf_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/filecache_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/cdb.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/seeklzop_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/seekbzip2.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/filecache.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/readlengths.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/seekbzip2_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/binary_file.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/seeklzop.py -> build/lib.linux-aarch64-cpython-313/bx/misc
copying lib/bx/misc/cdb_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc
creating build/lib.linux-aarch64-cpython-313/bx/motif
copying lib/bx/motif/pwm.py -> build/lib.linux-aarch64-cpython-313/bx/motif
copying lib/bx/motif/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/motif
copying lib/bx/motif/pwm_tests.py -> build/lib.linux-aarch64-cpython-313/bx/motif
creating build/lib.linux-aarch64-cpython-313/bx/phylo
copying lib/bx/phylo/phast.py -> build/lib.linux-aarch64-cpython-313/bx/phylo
copying lib/bx/phylo/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/phylo
copying lib/bx/phylo/phast_tests.py -> build/lib.linux-aarch64-cpython-313/bx/phylo
copying lib/bx/phylo/newick.py -> build/lib.linux-aarch64-cpython-313/bx/phylo
copying lib/bx/phylo/newick_tests.py -> build/lib.linux-aarch64-cpython-313/bx/phylo
creating build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/twobit.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/qdna_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/nib.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/seq_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/fasta.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/twobit_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/core.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/qdna.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/fasta_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/nib_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq
copying lib/bx/seq/seq.py -> build/lib.linux-aarch64-cpython-313/bx/seq
creating build/lib.linux-aarch64-cpython-313/bx/tabular
copying lib/bx/tabular/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/tabular
copying lib/bx/tabular/io.py -> build/lib.linux-aarch64-cpython-313/bx/tabular
creating build/lib.linux-aarch64-cpython-313/bx/arrays
copying lib/bx/arrays/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/arrays
copying lib/bx/arrays/array_tree_tests.py -> build/lib.linux-aarch64-cpython-313/bx/arrays
creating build/lib.linux-aarch64-cpython-313/bx/bbi
copying lib/bx/bbi/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/bbi
copying lib/bx/bbi/bigwig_tests.py -> build/lib.linux-aarch64-cpython-313/bx/bbi
creating build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/find_clusters.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/subtract.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/quicksect.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/coverage.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/merge.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/base_coverage.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/join.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/concat.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/intersect.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
copying lib/bx/intervals/operations/complement.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations
creating build/lib.linux-aarch64-cpython-313/bx/align/sitemask
copying lib/bx/align/sitemask/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask
copying lib/bx/align/sitemask/quality.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask
copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask
copying lib/bx/align/sitemask/core.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask
copying lib/bx/align/sitemask/cpg.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask
creating build/lib.linux-aarch64-cpython-313/bx/align/tools
copying lib/bx/align/tools/thread.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools
copying lib/bx/align/tools/tile.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools
copying lib/bx/align/tools/fuse.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools
copying lib/bx/align/tools/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools
copying lib/bx/align/tools/chop.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools
creating build/lib.linux-aarch64-cpython-313/bx/motif/io
copying lib/bx/motif/io/transfac_tests.py -> build/lib.linux-aarch64-cpython-313/bx/motif/io
copying lib/bx/motif/io/transfac.py -> build/lib.linux-aarch64-cpython-313/bx/motif/io
copying lib/bx/motif/io/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/motif/io
creating build/lib.linux-aarch64-cpython-313/bx/motif/logo
copying lib/bx/motif/logo/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/motif/logo
copying lib/bx/motif/logo/template.ps -> build/lib.linux-aarch64-cpython-313/bx/motif/logo
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/bitset.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bitset.pyx because it changed.
[1/1] Cythonizing lib/bx/bitset.pyx
building 'bx.bitset' extension
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/lib
creating build/temp.linux-aarch64-cpython-313/lib/bx
creating build/temp.linux-aarch64-cpython-313/src
creating build/temp.linux-aarch64-cpython-313/src/kent
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c lib/bx/bitset.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bitset.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c src/binBits.c -o build/temp.linux-aarch64-cpython-313/src/binBits.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c src/kent/bits.c -o build/temp.linux-aarch64-cpython-313/src/kent/bits.o
src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $";
| ^~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c src/kent/common.c -o build/temp.linux-aarch64-cpython-313/src/kent/common.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bitset.o build/temp.linux-aarch64-cpython-313/src/binBits.o build/temp.linux-aarch64-cpython-313/src/kent/bits.o build/temp.linux-aarch64-cpython-313/src/kent/common.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bitset.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/intervals/intersection.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/intervals/intersection.pyx because it changed.
[1/1] Cythonizing lib/bx/intervals/intersection.pyx
building 'bx.intervals.intersection' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/intervals
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/intervals/intersection.c -o build/temp.linux-aarch64-cpython-313/lib/bx/intervals/intersection.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/intervals/intersection.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/align/_core.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/align/_core.pyx because it changed.
[1/1] Cythonizing lib/bx/align/_core.pyx
building 'bx.align._core' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/align
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/align/_core.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/_core.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/align/_core.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/align/_core.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/seq/_nib.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/seq/_nib.pyx because it changed.
[1/1] Cythonizing lib/bx/seq/_nib.pyx
building 'bx.seq._nib' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/seq
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/seq/_nib.c -o build/temp.linux-aarch64-cpython-313/lib/bx/seq/_nib.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/seq/_nib.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/seq/_nib.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/seq/_twobit.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/seq/_twobit.pyx because it changed.
[1/1] Cythonizing lib/bx/seq/_twobit.pyx
building 'bx.seq._twobit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/seq/_twobit.c -o build/temp.linux-aarch64-cpython-313/lib/bx/seq/_twobit.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/seq/_twobit.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/_seqmapping.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/_seqmapping.pyx because it changed.
[1/1] Cythonizing lib/bx/_seqmapping.pyx
building 'bx._seqmapping' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/_seqmapping.c -o build/temp.linux-aarch64-cpython-313/lib/bx/_seqmapping.o
In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’,
inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:5104:13,
inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:8107:7:
lib/bx/_seqmapping.c:5142:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
5142 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int)))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.13/Python.h:38,
from lib/bx/_seqmapping.c:29:
/usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/_seqmapping.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/_seqmapping.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/misc/bgzf.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/misc/bgzf.pyx because it changed.
[1/1] Cythonizing lib/bx/misc/bgzf.pyx
building 'bx.misc.bgzf' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/misc
creating build/temp.linux-aarch64-cpython-313/src/samtools
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.13 -c lib/bx/misc/bgzf.c -o build/temp.linux-aarch64-cpython-313/lib/bx/misc/bgzf.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.13 -c src/samtools/bgzf.c -o build/temp.linux-aarch64-cpython-313/src/samtools/bgzf.o
src/samtools/bgzf.c: In function ‘cache_block’:
src/samtools/bgzf.c:422:47: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) {
| ^
src/samtools/bgzf.c: In function ‘read_block’:
src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
462 | if (count != sizeof(header)) {
| ^~
src/samtools/bgzf.c: In function ‘bgzf_close’:
src/samtools/bgzf.c:603:29: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
603 | int count, block_length = deflate_block(fp, 0);
| ^~~~~
src/samtools/bgzf.c: In function ‘bgzf_check_EOF’:
src/samtools/bgzf.c:662:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
662 | fread(buf, 1, 28, fp->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/misc/bgzf.o build/temp.linux-aarch64-cpython-313/src/samtools/bgzf.o -L/usr/lib/aarch64-linux-gnu -lz -o build/lib.linux-aarch64-cpython-313/bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/intervals/cluster.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/intervals/cluster.pyx because it changed.
[1/1] Cythonizing lib/bx/intervals/cluster.pyx
building 'bx.intervals.cluster' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c lib/bx/intervals/cluster.c -o build/temp.linux-aarch64-cpython-313/lib/bx/intervals/cluster.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c src/cluster.c -o build/temp.linux-aarch64-cpython-313/src/cluster.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/intervals/cluster.o build/temp.linux-aarch64-cpython-313/src/cluster.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/pwm/_position_weight_matrix.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/pwm/_position_weight_matrix.pyx because it changed.
[1/1] Cythonizing lib/bx/pwm/_position_weight_matrix.pyx
building 'bx.pwm._position_weight_matrix' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/pwm
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-aarch64-cpython-313/lib/bx/pwm/_position_weight_matrix.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c src/pwm_utils.c -o build/temp.linux-aarch64-cpython-313/src/pwm_utils.o
src/pwm_utils.c: In function ‘main’:
src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
12 | if (strlen(argv[2]) != string_size) {
| ^~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-aarch64-cpython-313/src/pwm_utils.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/motif/_pwm.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/motif/_pwm.pyx because it changed.
[1/1] Cythonizing lib/bx/motif/_pwm.pyx
building 'bx.motif._pwm' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/motif
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c lib/bx/motif/_pwm.c -o build/temp.linux-aarch64-cpython-313/lib/bx/motif/_pwm.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/motif/_pwm.c:1240:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1483:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
1483 | _import_array(void)
| ^~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/motif/_pwm.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/arrays/array_tree.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/arrays/array_tree.pyx because it changed.
[1/1] Cythonizing lib/bx/arrays/array_tree.pyx
building 'bx.arrays.array_tree' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/arrays
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c lib/bx/arrays/array_tree.c -o build/temp.linux-aarch64-cpython-313/lib/bx/arrays/array_tree.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/arrays/array_tree.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/arrays/array_tree.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/bbi/bpt_file.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bpt_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bpt_file.pyx
building 'bx.bbi.bpt_file' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/bbi
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bpt_file.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bpt_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/bbi/cirtree_file.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/cirtree_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/cirtree_file.pyx
building 'bx.bbi.cirtree_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/cirtree_file.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/cirtree_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/bbi/bbi_file.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bbi_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bbi_file.pyx
building 'bx.bbi.bbi_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bbi_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bbi_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bbi_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/bbi/bigwig_file.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bigwig_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bigwig_file.pyx
building 'bx.bbi.bigwig_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigwig_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bigwig_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’:
lib/bx/bbi/bigwig_file.c:6522:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
6522 | __pyx_t_12 = (__pyx_v_s < __pyx_v_self->start);
| ^
lib/bx/bbi/bigwig_file.c:6551:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
6551 | __pyx_t_12 = (__pyx_v_e > __pyx_v_self->end);
| ^
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’:
lib/bx/bbi/bigwig_file.c:8804:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
8804 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
| ^
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’:
lib/bx/bbi/bigwig_file.c:6551:29: warning: ‘__pyx_v_e’ may be used uninitialized [-Wmaybe-uninitialized]
6551 | __pyx_t_12 = (__pyx_v_e > __pyx_v_self->end);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5856:7: note: ‘__pyx_v_e’ was declared here
5856 | int __pyx_v_e;
| ^~~~~~~~~
lib/bx/bbi/bigwig_file.c:6522:29: warning: ‘__pyx_v_s’ may be used uninitialized [-Wmaybe-uninitialized]
6522 | __pyx_t_12 = (__pyx_v_s < __pyx_v_self->start);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5855:7: note: ‘__pyx_v_s’ was declared here
5855 | int __pyx_v_s;
| ^~~~~~~~~
lib/bx/bbi/bigwig_file.c:6608:18: warning: ‘__pyx_v_val’ may be used uninitialized [-Wmaybe-uninitialized]
6608 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 88, __pyx_L1_error)
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5857:9: note: ‘__pyx_v_val’ was declared here
5857 | float __pyx_v_val;
| ^~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigwig_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/bbi/bigbed_file.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/bbi/bigbed_file.pyx because it changed.
[1/1] Cythonizing lib/bx/bbi/bigbed_file.pyx
building 'bx.bbi.bigbed_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigbed_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bigbed_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigbed_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/align/_epo.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/align/_epo.pyx because it changed.
[1/1] Cythonizing lib/bx/align/_epo.pyx
building 'bx.align._epo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c lib/bx/align/_epo.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/_epo.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/align/_epo.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’:
lib/bx/align/_epo.c:8904:236: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare]
8904 | __pyx_t_5 = ((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_13, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen);
| ^~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/align/_epo.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/align/_epo.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/arrays/bed.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/arrays/bed.pyx because it changed.
[1/1] Cythonizing lib/bx/arrays/bed.pyx
building 'bx.arrays.bed' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/arrays/bed.c -o build/temp.linux-aarch64-cpython-313/lib/bx/arrays/bed.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/arrays/bed.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/arrays/bed.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/arrays/wiggle.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code
Compiling lib/bx/arrays/wiggle.pyx because it changed.
[1/1] Cythonizing lib/bx/arrays/wiggle.pyx
building 'bx.arrays.wiggle' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/arrays/wiggle.c -o build/temp.linux-aarch64-cpython-313/lib/bx/arrays/wiggle.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/arrays/wiggle.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/align/sitemask/_cpg.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/align/sitemask/_cpg.pyx because it changed.
[1/1] Cythonizing lib/bx/align/sitemask/_cpg.pyx
building 'bx.align.sitemask._cpg' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/_cpg.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/find_cpg.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/_cpg.o build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/find_cpg.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/intseq/ngramcount.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/intseq/ngramcount.pyx because it changed.
[1/1] Cythonizing lib/bx/intseq/ngramcount.pyx
building 'bx.intseq.ngramcount' extension
creating build/temp.linux-aarch64-cpython-313/lib/bx/intseq
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-aarch64-cpython-313/lib/bx/intseq/ngramcount.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/intseq/ngramcount.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/lib/bx/misc/_seekbzip2.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling lib/bx/misc/_seekbzip2.pyx because it changed.
[1/1] Cythonizing lib/bx/misc/_seekbzip2.pyx
building 'bx.misc._seekbzip2' extension
creating build/temp.linux-aarch64-cpython-313/src/bunzip
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.13 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-aarch64-cpython-313/lib/bx/misc/_seekbzip2.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.13 -c src/bunzip/micro-bunzip.c -o build/temp.linux-aarch64-cpython-313/src/bunzip/micro-bunzip.o
src/bunzip/micro-bunzip.c: In function ‘get_next_block’:
src/bunzip/micro-bunzip.c:151:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
151 | if((origPtr=get_bits(bd,24)) > dbufSize) return RETVAL_DATA_ERROR;
| ^
src/bunzip/micro-bunzip.c:298:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
298 | while (bd->inbufBitCount<hufGroup->maxLen) {
| ^
src/bunzip/micro-bunzip.c:400:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR;
| ^~
src/bunzip/micro-bunzip.c: In function ‘start_bunzip’:
src/bunzip/micro-bunzip.c:629:26: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign]
629 | bd->inbuf=inbuf;
| ^
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/misc/_seekbzip2.o build/temp.linux-aarch64-cpython-313/src/bunzip/micro-bunzip.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.13
copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.13
copying and adjusting scripts/table_filter.py -> build/scripts-3.13
copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.13
copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.13
copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.13
copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.13
copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.13
copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.13
copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.13
copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.13
copying and adjusting scripts/maf_chunk.py -> build/scripts-3.13
copying and adjusting scripts/bed_coverage.py -> build/scripts-3.13
copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.13
copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.13
copying and adjusting scripts/prefix_lines.py -> build/scripts-3.13
copying and adjusting scripts/bed_intersect.py -> build/scripts-3.13
copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.13
copying and adjusting scripts/bed_complement.py -> build/scripts-3.13
copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.13
copying and adjusting scripts/out_to_chain.py -> build/scripts-3.13
copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.13
copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.13
copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.13
copying and adjusting scripts/maf_randomize.py -> build/scripts-3.13
copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.13
copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.13
copying and adjusting scripts/bnMapper.py -> build/scripts-3.13
copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.13
copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.13
copying and adjusting scripts/pretty_table.py -> build/scripts-3.13
copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.13
copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.13
copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.13
copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.13
copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.13
copying and adjusting scripts/random_lines.py -> build/scripts-3.13
copying and adjusting scripts/nib_length.py -> build/scripts-3.13
copying and adjusting scripts/maf_count.py -> build/scripts-3.13
copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.13
copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.13
copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.13
copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.13
copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.13
copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.13
copying and adjusting scripts/align_print_template.py -> build/scripts-3.13
copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.13
copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.13
copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.13
copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.13
copying and adjusting scripts/mask_quality.py -> build/scripts-3.13
copying and adjusting scripts/maf_select.py -> build/scripts-3.13
copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.13
copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.13
copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.13
copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.13
copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.13
copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.13
copying and adjusting scripts/maf_tile.py -> build/scripts-3.13
copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.13
copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.13
copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.13
copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.13
copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.13
copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.13
copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.13
copying and adjusting scripts/line_select.py -> build/scripts-3.13
copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.13
copying and adjusting scripts/maf_filter.py -> build/scripts-3.13
copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.13
copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.13
copying and adjusting scripts/maf_truncate.py -> build/scripts-3.13
copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.13
copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.13
copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.13
copying and adjusting scripts/interval_join.py -> build/scripts-3.13
copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.13
copying and adjusting scripts/maf_build_index.py -> build/scripts-3.13
copying and adjusting scripts/table_add_column.py -> build/scripts-3.13
copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.13
copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.13
copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.13
copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.13
copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.13
copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.13
copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.13
copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.13
copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.13
copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.13
copying and adjusting scripts/maf_chop.py -> build/scripts-3.13
copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.13
copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.13
copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.13
copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.13
changing mode of build/scripts-3.13/maf_split_by_src.py from 644 to 755
changing mode of build/scripts-3.13/maf_mask_cpg.py from 644 to 755
changing mode of build/scripts-3.13/table_filter.py from 644 to 755
changing mode of build/scripts-3.13/bed_count_overlapping.py from 644 to 755
changing mode of build/scripts-3.13/bed_bigwig_profile.py from 644 to 755
changing mode of build/scripts-3.13/ucsc_gene_table_to_intervals.py from 644 to 755
changing mode of build/scripts-3.13/maf_extract_ranges.py from 644 to 755
changing mode of build/scripts-3.13/maf_translate_chars.py from 644 to 755
changing mode of build/scripts-3.13/get_scores_in_intervals.py from 644 to 755
changing mode of build/scripts-3.13/bed_rand_intersect.py from 644 to 755
changing mode of build/scripts-3.13/maf_tile_2.py from 644 to 755
changing mode of build/scripts-3.13/maf_chunk.py from 644 to 755
changing mode of build/scripts-3.13/bed_coverage.py from 644 to 755
changing mode of build/scripts-3.13/wiggle_to_array_tree.py from 644 to 755
changing mode of build/scripts-3.13/maf_to_int_seqs.py from 644 to 755
changing mode of build/scripts-3.13/prefix_lines.py from 644 to 755
changing mode of build/scripts-3.13/bed_intersect.py from 644 to 755
changing mode of build/scripts-3.13/maf_limit_to_species.py from 644 to 755
changing mode of build/scripts-3.13/bed_complement.py from 644 to 755
changing mode of build/scripts-3.13/lav_to_axt.py from 644 to 755
changing mode of build/scripts-3.13/out_to_chain.py from 644 to 755
changing mode of build/scripts-3.13/maf_thread_for_species.py from 644 to 755
changing mode of build/scripts-3.13/gene_fourfold_sites.py from 644 to 755
changing mode of build/scripts-3.13/int_seqs_to_char_strings.py from 644 to 755
changing mode of build/scripts-3.13/maf_randomize.py from 644 to 755
changing mode of build/scripts-3.13/interval_count_intersections.py from 644 to 755
changing mode of build/scripts-3.13/maf_extract_chrom_ranges.py from 644 to 755
changing mode of build/scripts-3.13/bnMapper.py from 644 to 755
changing mode of build/scripts-3.13/axt_to_fasta.py from 644 to 755
changing mode of build/scripts-3.13/maf_gap_frequency.py from 644 to 755
changing mode of build/scripts-3.13/pretty_table.py from 644 to 755
changing mode of build/scripts-3.13/maf_mapping_word_frequency.py from 644 to 755
changing mode of build/scripts-3.13/maf_col_counts_all.py from 644 to 755
changing mode of build/scripts-3.13/maf_species_in_all_files.py from 644 to 755
changing mode of build/scripts-3.13/nib_intervals_to_fasta.py from 644 to 755
changing mode of build/scripts-3.13/bed_diff_basewise_summary.py from 644 to 755
changing mode of build/scripts-3.13/random_lines.py from 644 to 755
changing mode of build/scripts-3.13/nib_length.py from 644 to 755
changing mode of build/scripts-3.13/maf_count.py from 644 to 755
changing mode of build/scripts-3.13/tfloc_summary.py from 644 to 755
changing mode of build/scripts-3.13/maf_shuffle_columns.py from 644 to 755
changing mode of build/scripts-3.13/maf_print_scores.py from 644 to 755
changing mode of build/scripts-3.13/bed_extend_to.py from 644 to 755
changing mode of build/scripts-3.13/maf_word_frequency.py from 644 to 755
changing mode of build/scripts-3.13/wiggle_to_simple.py from 644 to 755
changing mode of build/scripts-3.13/align_print_template.py from 644 to 755
changing mode of build/scripts-3.13/bed_intersect_basewise.py from 644 to 755
changing mode of build/scripts-3.13/qv_to_bqv.py from 644 to 755
changing mode of build/scripts-3.13/maf_percent_identity.py from 644 to 755
changing mode of build/scripts-3.13/find_in_sorted_file.py from 644 to 755
changing mode of build/scripts-3.13/mask_quality.py from 644 to 755
changing mode of build/scripts-3.13/maf_select.py from 644 to 755
changing mode of build/scripts-3.13/nib_chrom_intervals_to_fasta.py from 644 to 755
changing mode of build/scripts-3.13/maf_tile_2bit.py from 644 to 755
changing mode of build/scripts-3.13/bed_count_by_interval.py from 644 to 755
changing mode of build/scripts-3.13/wiggle_to_chr_binned_array.py from 644 to 755
changing mode of build/scripts-3.13/mMK_bitset.py from 644 to 755
changing mode of build/scripts-3.13/lav_to_maf.py from 644 to 755
changing mode of build/scripts-3.13/maf_tile.py from 644 to 755
changing mode of build/scripts-3.13/maf_covered_ranges.py from 644 to 755
changing mode of build/scripts-3.13/lzop_build_offset_table.py from 644 to 755
changing mode of build/scripts-3.13/maf_to_concat_fasta.py from 644 to 755
changing mode of build/scripts-3.13/axt_to_maf.py from 644 to 755
changing mode of build/scripts-3.13/div_snp_table_chr.py from 644 to 755
changing mode of build/scripts-3.13/axt_extract_ranges.py from 644 to 755
changing mode of build/scripts-3.13/aggregate_scores_in_intervals.py from 644 to 755
changing mode of build/scripts-3.13/line_select.py from 644 to 755
changing mode of build/scripts-3.13/maf_print_chroms.py from 644 to 755
changing mode of build/scripts-3.13/maf_filter.py from 644 to 755
changing mode of build/scripts-3.13/maf_extract_ranges_indexed.py from 644 to 755
changing mode of build/scripts-3.13/maf_div_sites.py from 644 to 755
changing mode of build/scripts-3.13/maf_truncate.py from 644 to 755
changing mode of build/scripts-3.13/axt_to_lav.py from 644 to 755
changing mode of build/scripts-3.13/maf_drop_overlapping.py from 644 to 755
changing mode of build/scripts-3.13/one_field_per_line.py from 644 to 755
changing mode of build/scripts-3.13/interval_join.py from 644 to 755
changing mode of build/scripts-3.13/maf_mean_length_ungapped_piece.py from 644 to 755
changing mode of build/scripts-3.13/maf_build_index.py from 644 to 755
changing mode of build/scripts-3.13/table_add_column.py from 644 to 755
changing mode of build/scripts-3.13/wiggle_to_binned_array.py from 644 to 755
changing mode of build/scripts-3.13/maf_to_axt.py from 644 to 755
changing mode of build/scripts-3.13/maf_interval_alignibility.py from 644 to 755
changing mode of build/scripts-3.13/bed_subtract_basewise.py from 644 to 755
changing mode of build/scripts-3.13/maf_filter_max_wc.py from 644 to 755
changing mode of build/scripts-3.13/maf_region_coverage_by_src.py from 644 to 755
changing mode of build/scripts-3.13/bed_merge_overlapping.py from 644 to 755
changing mode of build/scripts-3.13/bed_build_windows.py from 644 to 755
changing mode of build/scripts-3.13/maf_col_counts.py from 644 to 755
changing mode of build/scripts-3.13/maf_covered_regions.py from 644 to 755
changing mode of build/scripts-3.13/maf_chop.py from 644 to 755
changing mode of build/scripts-3.13/maf_to_fasta.py from 644 to 755
changing mode of build/scripts-3.13/maf_percent_columns_matching.py from 644 to 755
changing mode of build/scripts-3.13/maf_gc_content.py from 644 to 755
changing mode of build/scripts-3.13/bed_coverage_by_interval.py from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/bx
creating build/bdist.linux-aarch64/wheel/bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/random_intervals.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/cluster_tests.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/intersection_tests.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-313/bx/intervals/io.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
creating build/bdist.linux-aarch64/wheel/bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/find_clusters.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/subtract.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/quicksect.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/coverage.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/merge.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/base_coverage.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/join.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/concat.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/intersect.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/complement.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-313/bx/wiggle.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_score_maf.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/bed_score_aligned_pwm.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_score_motifs.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/maf_select_motifs.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_tests.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/position_weight_matrix.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_score_positions.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/pwm/bed_score_aligned_string.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-313/bx/binned_array.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/_seqmapping.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/intseq
copying build/lib.linux-aarch64-cpython-313/bx/intseq/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intseq
copying build/lib.linux-aarch64-cpython-313/bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intseq
copying build/lib.linux-aarch64-cpython-313/bx/bitset.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/align
creating build/bdist.linux-aarch64/wheel/bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/quality.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/sitemask_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/core.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/cpg.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-313/bx/align/axt.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/lav.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/epo_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/_epo.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/score_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/score.py -> build/bdist.linux-aarch64/wheel/./bx/align
creating build/bdist.linux-aarch64/wheel/bx/align/tools
copying build/lib.linux-aarch64-cpython-313/bx/align/tools/thread.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-313/bx/align/tools/tile.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-313/bx/align/tools/fuse.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-313/bx/align/tools/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-313/bx/align/tools/chop.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-313/bx/align/core.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/lav_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/maf.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/maf_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/_core.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/align/epo.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-313/bx/interval_index_file_tests.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/cookbook
copying build/lib.linux-aarch64-cpython-313/bx/cookbook/doc_optparse.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook
copying build/lib.linux-aarch64-cpython-313/bx/cookbook/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook
copying build/lib.linux-aarch64-cpython-313/bx/cookbook/attribute.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook
copying build/lib.linux-aarch64-cpython-313/bx/__init__.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/bitset_builders.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/gene_reader.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/seqmapping_tests.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/bitset_utils.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/interval_index_file.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/bgzf_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/filecache_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/cdb.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/seeklzop_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/seekbzip2.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/filecache.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/readlengths.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/seekbzip2_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/binary_file.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/seeklzop.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/misc/cdb_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-313/bx/binned_array_tests.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/seqmapping.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/motif
copying build/lib.linux-aarch64-cpython-313/bx/motif/pwm.py -> build/bdist.linux-aarch64/wheel/./bx/motif
copying build/lib.linux-aarch64-cpython-313/bx/motif/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif
copying build/lib.linux-aarch64-cpython-313/bx/motif/pwm_tests.py -> build/bdist.linux-aarch64/wheel/./bx/motif
creating build/bdist.linux-aarch64/wheel/bx/motif/io
copying build/lib.linux-aarch64-cpython-313/bx/motif/io/transfac_tests.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io
copying build/lib.linux-aarch64-cpython-313/bx/motif/io/transfac.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io
copying build/lib.linux-aarch64-cpython-313/bx/motif/io/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io
copying build/lib.linux-aarch64-cpython-313/bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/motif
creating build/bdist.linux-aarch64/wheel/bx/motif/logo
copying build/lib.linux-aarch64-cpython-313/bx/motif/logo/template.ps -> build/bdist.linux-aarch64/wheel/./bx/motif/logo
copying build/lib.linux-aarch64-cpython-313/bx/motif/logo/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif/logo
creating build/bdist.linux-aarch64/wheel/bx/phylo
copying build/lib.linux-aarch64-cpython-313/bx/phylo/phast.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-313/bx/phylo/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-313/bx/phylo/phast_tests.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-313/bx/phylo/newick.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-313/bx/phylo/newick_tests.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-313/bx/bitset_tests.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-313/bx/wiggle_tests.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/twobit.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/qdna_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/nib.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/seq_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/fasta.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/twobit_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/core.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/qdna.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/fasta_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/nib_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/seq.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-313/bx/seq/_nib.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/seq
creating build/bdist.linux-aarch64/wheel/bx/tabular
copying build/lib.linux-aarch64-cpython-313/bx/tabular/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/tabular
copying build/lib.linux-aarch64-cpython-313/bx/tabular/io.py -> build/bdist.linux-aarch64/wheel/./bx/tabular
creating build/bdist.linux-aarch64/wheel/bx/arrays
copying build/lib.linux-aarch64-cpython-313/bx/arrays/bed.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-313/bx/arrays/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-313/bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-313/bx/arrays/array_tree_tests.py -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-313/bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-313/bx/filter.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/bigwig_tests.py -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-313/bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
creating build/bdist.linux-aarch64/wheel/bx_extras
copying build/lib.linux-aarch64-cpython-313/bx_extras/fpconst_tests.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-313/bx_extras/pstat.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-313/bx_extras/stats.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-313/bx_extras/__init__.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-313/bx_extras/lrucache.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-313/bx_extras/fpconst.py -> build/bdist.linux-aarch64/wheel/./bx_extras
running install_egg_info
running egg_info
creating lib/bx_python.egg-info
writing lib/bx_python.egg-info/PKG-INFO
writing dependency_links to lib/bx_python.egg-info/dependency_links.txt
writing requirements to lib/bx_python.egg-info/requires.txt
writing top-level names to lib/bx_python.egg-info/top_level.txt
writing manifest file 'lib/bx_python.egg-info/SOURCES.txt'
reading manifest file 'lib/bx_python.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'lib/bx_python.egg-info/SOURCES.txt'
Copying lib/bx_python.egg-info to build/bdist.linux-aarch64/wheel/./bx_python-0.13.0.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data
creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_split_by_src.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_mask_cpg.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/table_filter.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_count_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_bigwig_profile.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/ucsc_gene_table_to_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_extract_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_translate_chars.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/get_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_rand_intersect.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_tile_2.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_chunk.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_coverage.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/wiggle_to_array_tree.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_to_int_seqs.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/prefix_lines.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_intersect.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_limit_to_species.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_complement.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/lav_to_axt.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/out_to_chain.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_thread_for_species.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/gene_fourfold_sites.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/int_seqs_to_char_strings.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_randomize.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/interval_count_intersections.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_extract_chrom_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bnMapper.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/axt_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_gap_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/pretty_table.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_mapping_word_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_col_counts_all.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_species_in_all_files.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/nib_intervals_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_diff_basewise_summary.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/random_lines.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/nib_length.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_count.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/tfloc_summary.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_shuffle_columns.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_print_scores.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_extend_to.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_word_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/wiggle_to_simple.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/align_print_template.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_intersect_basewise.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/qv_to_bqv.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_percent_identity.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/find_in_sorted_file.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/mask_quality.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_select.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/nib_chrom_intervals_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_tile_2bit.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_count_by_interval.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/wiggle_to_chr_binned_array.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/mMK_bitset.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/lav_to_maf.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_tile.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_covered_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/lzop_build_offset_table.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_to_concat_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/axt_to_maf.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/div_snp_table_chr.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/axt_extract_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/aggregate_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/line_select.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_print_chroms.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_filter.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_extract_ranges_indexed.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_div_sites.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_truncate.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/axt_to_lav.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_drop_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/one_field_per_line.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/interval_join.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_mean_length_ungapped_piece.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_build_index.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/table_add_column.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/wiggle_to_binned_array.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_to_axt.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_interval_alignibility.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_subtract_basewise.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_filter_max_wc.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_region_coverage_by_src.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_merge_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_build_windows.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_col_counts.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_covered_regions.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_chop.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_percent_columns_matching.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/maf_gc_content.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.13/bed_coverage_by_interval.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_split_by_src.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mask_cpg.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/table_filter.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_count_overlapping.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_bigwig_profile.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_translate_chars.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/get_scores_in_intervals.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_rand_intersect.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile_2.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_chunk.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_coverage.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_int_seqs.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/prefix_lines.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_intersect.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_limit_to_species.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_complement.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lav_to_axt.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/out_to_chain.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_thread_for_species.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/gene_fourfold_sites.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_randomize.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/interval_count_intersections.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bnMapper.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_gap_frequency.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/pretty_table.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_col_counts_all.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_species_in_all_files.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/random_lines.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_length.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_count.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/tfloc_summary.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_shuffle_columns.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_print_scores.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_extend_to.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_word_frequency.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_simple.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/align_print_template.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_intersect_basewise.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/qv_to_bqv.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_percent_identity.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/find_in_sorted_file.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/mask_quality.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_select.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile_2bit.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_count_by_interval.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/mMK_bitset.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lav_to_maf.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_covered_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lzop_build_offset_table.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_maf.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/div_snp_table_chr.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_extract_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/line_select.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_print_chroms.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_filter.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_div_sites.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_truncate.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_lav.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_drop_overlapping.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/one_field_per_line.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/interval_join.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_build_index.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/table_add_column.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_axt.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_interval_alignibility.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_subtract_basewise.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_filter_max_wc.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_merge_overlapping.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_build_windows.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_col_counts.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_covered_regions.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_chop.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_gc_content.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py to 755
creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python/.tmp-lyg239pb/bx_python-0.13.0-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'bx/__init__.py'
adding 'bx/_seqmapping.cpython-313-aarch64-linux-gnu.so'
adding 'bx/binned_array.py'
adding 'bx/binned_array_tests.py'
adding 'bx/bitset.cpython-313-aarch64-linux-gnu.so'
adding 'bx/bitset_builders.py'
adding 'bx/bitset_tests.py'
adding 'bx/bitset_utils.py'
adding 'bx/filter.py'
adding 'bx/gene_reader.py'
adding 'bx/interval_index_file.py'
adding 'bx/interval_index_file_tests.py'
adding 'bx/seqmapping.py'
adding 'bx/seqmapping_tests.py'
adding 'bx/wiggle.py'
adding 'bx/wiggle_tests.py'
adding 'bx/align/__init__.py'
adding 'bx/align/_core.cpython-313-aarch64-linux-gnu.so'
adding 'bx/align/_epo.cpython-313-aarch64-linux-gnu.so'
adding 'bx/align/axt.py'
adding 'bx/align/core.py'
adding 'bx/align/epo.py'
adding 'bx/align/epo_tests.py'
adding 'bx/align/lav.py'
adding 'bx/align/lav_tests.py'
adding 'bx/align/maf.py'
adding 'bx/align/maf_tests.py'
adding 'bx/align/score.py'
adding 'bx/align/score_tests.py'
adding 'bx/align/sitemask/__init__.py'
adding 'bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so'
adding 'bx/align/sitemask/core.py'
adding 'bx/align/sitemask/cpg.py'
adding 'bx/align/sitemask/quality.py'
adding 'bx/align/sitemask/sitemask_tests.py'
adding 'bx/align/tools/__init__.py'
adding 'bx/align/tools/chop.py'
adding 'bx/align/tools/fuse.py'
adding 'bx/align/tools/thread.py'
adding 'bx/align/tools/tile.py'
adding 'bx/arrays/__init__.py'
adding 'bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so'
adding 'bx/arrays/array_tree_tests.py'
adding 'bx/arrays/bed.cpython-313-aarch64-linux-gnu.so'
adding 'bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so'
adding 'bx/bbi/__init__.py'
adding 'bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so'
adding 'bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so'
adding 'bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so'
adding 'bx/bbi/bigwig_tests.py'
adding 'bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so'
adding 'bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so'
adding 'bx/cookbook/__init__.py'
adding 'bx/cookbook/attribute.py'
adding 'bx/cookbook/doc_optparse.py'
adding 'bx/intervals/__init__.py'
adding 'bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so'
adding 'bx/intervals/cluster_tests.py'
adding 'bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so'
adding 'bx/intervals/intersection_tests.py'
adding 'bx/intervals/io.py'
adding 'bx/intervals/random_intervals.py'
adding 'bx/intervals/operations/__init__.py'
adding 'bx/intervals/operations/base_coverage.py'
adding 'bx/intervals/operations/complement.py'
adding 'bx/intervals/operations/concat.py'
adding 'bx/intervals/operations/coverage.py'
adding 'bx/intervals/operations/find_clusters.py'
adding 'bx/intervals/operations/intersect.py'
adding 'bx/intervals/operations/join.py'
adding 'bx/intervals/operations/merge.py'
adding 'bx/intervals/operations/quicksect.py'
adding 'bx/intervals/operations/subtract.py'
adding 'bx/intseq/__init__.py'
adding 'bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so'
adding 'bx/misc/__init__.py'
adding 'bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so'
adding 'bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so'
adding 'bx/misc/bgzf_tests.py'
adding 'bx/misc/binary_file.py'
adding 'bx/misc/cdb.py'
adding 'bx/misc/cdb_tests.py'
adding 'bx/misc/filecache.py'
adding 'bx/misc/filecache_tests.py'
adding 'bx/misc/readlengths.py'
adding 'bx/misc/seekbzip2.py'
adding 'bx/misc/seekbzip2_tests.py'
adding 'bx/misc/seeklzop.py'
adding 'bx/misc/seeklzop_tests.py'
adding 'bx/motif/__init__.py'
adding 'bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so'
adding 'bx/motif/pwm.py'
adding 'bx/motif/pwm_tests.py'
adding 'bx/motif/io/__init__.py'
adding 'bx/motif/io/transfac.py'
adding 'bx/motif/io/transfac_tests.py'
adding 'bx/motif/logo/__init__.py'
adding 'bx/motif/logo/template.ps'
adding 'bx/phylo/__init__.py'
adding 'bx/phylo/newick.py'
adding 'bx/phylo/newick_tests.py'
adding 'bx/phylo/phast.py'
adding 'bx/phylo/phast_tests.py'
adding 'bx/pwm/__init__.py'
adding 'bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so'
adding 'bx/pwm/bed_score_aligned_pwm.py'
adding 'bx/pwm/bed_score_aligned_string.py'
adding 'bx/pwm/maf_select_motifs.py'
adding 'bx/pwm/position_weight_matrix.py'
adding 'bx/pwm/pwm_score_maf.py'
adding 'bx/pwm/pwm_score_motifs.py'
adding 'bx/pwm/pwm_score_positions.py'
adding 'bx/pwm/pwm_tests.py'
adding 'bx/seq/__init__.py'
adding 'bx/seq/_nib.cpython-313-aarch64-linux-gnu.so'
adding 'bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so'
adding 'bx/seq/core.py'
adding 'bx/seq/fasta.py'
adding 'bx/seq/fasta_tests.py'
adding 'bx/seq/nib.py'
adding 'bx/seq/nib_tests.py'
adding 'bx/seq/qdna.py'
adding 'bx/seq/qdna_tests.py'
adding 'bx/seq/seq.py'
adding 'bx/seq/seq_tests.py'
adding 'bx/seq/twobit.py'
adding 'bx/seq/twobit_tests.py'
adding 'bx/tabular/__init__.py'
adding 'bx/tabular/io.py'
adding 'bx_extras/__init__.py'
adding 'bx_extras/fpconst.py'
adding 'bx_extras/fpconst_tests.py'
adding 'bx_extras/lrucache.py'
adding 'bx_extras/pstat.py'
adding 'bx_extras/stats.py'
adding 'bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py'
adding 'bx_python-0.13.0.data/scripts/align_print_template.py'
adding 'bx_python-0.13.0.data/scripts/axt_extract_ranges.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_lav.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_maf.py'
adding 'bx_python-0.13.0.data/scripts/bed_bigwig_profile.py'
adding 'bx_python-0.13.0.data/scripts/bed_build_windows.py'
adding 'bx_python-0.13.0.data/scripts/bed_complement.py'
adding 'bx_python-0.13.0.data/scripts/bed_count_by_interval.py'
adding 'bx_python-0.13.0.data/scripts/bed_count_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/bed_coverage.py'
adding 'bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py'
adding 'bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py'
adding 'bx_python-0.13.0.data/scripts/bed_extend_to.py'
adding 'bx_python-0.13.0.data/scripts/bed_intersect.py'
adding 'bx_python-0.13.0.data/scripts/bed_intersect_basewise.py'
adding 'bx_python-0.13.0.data/scripts/bed_merge_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/bed_rand_intersect.py'
adding 'bx_python-0.13.0.data/scripts/bed_subtract_basewise.py'
adding 'bx_python-0.13.0.data/scripts/bnMapper.py'
adding 'bx_python-0.13.0.data/scripts/div_snp_table_chr.py'
adding 'bx_python-0.13.0.data/scripts/find_in_sorted_file.py'
adding 'bx_python-0.13.0.data/scripts/gene_fourfold_sites.py'
adding 'bx_python-0.13.0.data/scripts/get_scores_in_intervals.py'
adding 'bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py'
adding 'bx_python-0.13.0.data/scripts/interval_count_intersections.py'
adding 'bx_python-0.13.0.data/scripts/interval_join.py'
adding 'bx_python-0.13.0.data/scripts/lav_to_axt.py'
adding 'bx_python-0.13.0.data/scripts/lav_to_maf.py'
adding 'bx_python-0.13.0.data/scripts/line_select.py'
adding 'bx_python-0.13.0.data/scripts/lzop_build_offset_table.py'
adding 'bx_python-0.13.0.data/scripts/mMK_bitset.py'
adding 'bx_python-0.13.0.data/scripts/maf_build_index.py'
adding 'bx_python-0.13.0.data/scripts/maf_chop.py'
adding 'bx_python-0.13.0.data/scripts/maf_chunk.py'
adding 'bx_python-0.13.0.data/scripts/maf_col_counts.py'
adding 'bx_python-0.13.0.data/scripts/maf_col_counts_all.py'
adding 'bx_python-0.13.0.data/scripts/maf_count.py'
adding 'bx_python-0.13.0.data/scripts/maf_covered_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_covered_regions.py'
adding 'bx_python-0.13.0.data/scripts/maf_div_sites.py'
adding 'bx_python-0.13.0.data/scripts/maf_drop_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py'
adding 'bx_python-0.13.0.data/scripts/maf_filter.py'
adding 'bx_python-0.13.0.data/scripts/maf_filter_max_wc.py'
adding 'bx_python-0.13.0.data/scripts/maf_gap_frequency.py'
adding 'bx_python-0.13.0.data/scripts/maf_gc_content.py'
adding 'bx_python-0.13.0.data/scripts/maf_interval_alignibility.py'
adding 'bx_python-0.13.0.data/scripts/maf_limit_to_species.py'
adding 'bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py'
adding 'bx_python-0.13.0.data/scripts/maf_mask_cpg.py'
adding 'bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py'
adding 'bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py'
adding 'bx_python-0.13.0.data/scripts/maf_percent_identity.py'
adding 'bx_python-0.13.0.data/scripts/maf_print_chroms.py'
adding 'bx_python-0.13.0.data/scripts/maf_print_scores.py'
adding 'bx_python-0.13.0.data/scripts/maf_randomize.py'
adding 'bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py'
adding 'bx_python-0.13.0.data/scripts/maf_select.py'
adding 'bx_python-0.13.0.data/scripts/maf_shuffle_columns.py'
adding 'bx_python-0.13.0.data/scripts/maf_species_in_all_files.py'
adding 'bx_python-0.13.0.data/scripts/maf_split_by_src.py'
adding 'bx_python-0.13.0.data/scripts/maf_thread_for_species.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile_2.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile_2bit.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_axt.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_int_seqs.py'
adding 'bx_python-0.13.0.data/scripts/maf_translate_chars.py'
adding 'bx_python-0.13.0.data/scripts/maf_truncate.py'
adding 'bx_python-0.13.0.data/scripts/maf_word_frequency.py'
adding 'bx_python-0.13.0.data/scripts/mask_quality.py'
adding 'bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/nib_length.py'
adding 'bx_python-0.13.0.data/scripts/one_field_per_line.py'
adding 'bx_python-0.13.0.data/scripts/out_to_chain.py'
adding 'bx_python-0.13.0.data/scripts/prefix_lines.py'
adding 'bx_python-0.13.0.data/scripts/pretty_table.py'
adding 'bx_python-0.13.0.data/scripts/qv_to_bqv.py'
adding 'bx_python-0.13.0.data/scripts/random_lines.py'
adding 'bx_python-0.13.0.data/scripts/table_add_column.py'
adding 'bx_python-0.13.0.data/scripts/table_filter.py'
adding 'bx_python-0.13.0.data/scripts/tfloc_summary.py'
adding 'bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_simple.py'
adding 'bx_python-0.13.0.dist-info/LICENSE'
adding 'bx_python-0.13.0.dist-info/METADATA'
adding 'bx_python-0.13.0.dist-info/WHEEL'
adding 'bx_python-0.13.0.dist-info/top_level.txt'
adding 'bx_python-0.13.0.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built bx_python-0.13.0-cp313-cp313-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_bx-python
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-312
creating build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/wiggle.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/binned_array.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/interval_index_file_tests.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/__init__.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/bitset_builders.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/gene_reader.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/seqmapping_tests.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/bitset_utils.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/interval_index_file.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/binned_array_tests.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/seqmapping.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/bitset_tests.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/wiggle_tests.py -> build/lib.linux-aarch64-cpython-312/bx
copying lib/bx/filter.py -> build/lib.linux-aarch64-cpython-312/bx
creating build/lib.linux-aarch64-cpython-312/bx_extras
copying lib/bx_extras/fpconst_tests.py -> build/lib.linux-aarch64-cpython-312/bx_extras
copying lib/bx_extras/pstat.py -> build/lib.linux-aarch64-cpython-312/bx_extras
copying lib/bx_extras/stats.py -> build/lib.linux-aarch64-cpython-312/bx_extras
copying lib/bx_extras/__init__.py -> build/lib.linux-aarch64-cpython-312/bx_extras
copying lib/bx_extras/lrucache.py -> build/lib.linux-aarch64-cpython-312/bx_extras
copying lib/bx_extras/fpconst.py -> build/lib.linux-aarch64-cpython-312/bx_extras
creating build/lib.linux-aarch64-cpython-312/bx/intervals
copying lib/bx/intervals/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/intervals
copying lib/bx/intervals/random_intervals.py -> build/lib.linux-aarch64-cpython-312/bx/intervals
copying lib/bx/intervals/cluster_tests.py -> build/lib.linux-aarch64-cpython-312/bx/intervals
copying lib/bx/intervals/intersection_tests.py -> build/lib.linux-aarch64-cpython-312/bx/intervals
copying lib/bx/intervals/io.py -> build/lib.linux-aarch64-cpython-312/bx/intervals
creating build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_score_maf.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/maf_select_motifs.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_tests.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/position_weight_matrix.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/pwm_score_positions.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.linux-aarch64-cpython-312/bx/pwm
creating build/lib.linux-aarch64-cpython-312/bx/intseq
copying lib/bx/intseq/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/intseq
creating build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/axt.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/lav.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/epo_tests.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/score_tests.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/score.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/core.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/lav_tests.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/maf.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/maf_tests.py -> build/lib.linux-aarch64-cpython-312/bx/align
copying lib/bx/align/epo.py -> build/lib.linux-aarch64-cpython-312/bx/align
creating build/lib.linux-aarch64-cpython-312/bx/cookbook
copying lib/bx/cookbook/doc_optparse.py -> build/lib.linux-aarch64-cpython-312/bx/cookbook
copying lib/bx/cookbook/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/cookbook
copying lib/bx/cookbook/attribute.py -> build/lib.linux-aarch64-cpython-312/bx/cookbook
creating build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/bgzf_tests.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/filecache_tests.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/cdb.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/seeklzop_tests.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/seekbzip2.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/filecache.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/readlengths.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/seekbzip2_tests.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/binary_file.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/seeklzop.py -> build/lib.linux-aarch64-cpython-312/bx/misc
copying lib/bx/misc/cdb_tests.py -> build/lib.linux-aarch64-cpython-312/bx/misc
creating build/lib.linux-aarch64-cpython-312/bx/motif
copying lib/bx/motif/pwm.py -> build/lib.linux-aarch64-cpython-312/bx/motif
copying lib/bx/motif/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/motif
copying lib/bx/motif/pwm_tests.py -> build/lib.linux-aarch64-cpython-312/bx/motif
creating build/lib.linux-aarch64-cpython-312/bx/phylo
copying lib/bx/phylo/phast.py -> build/lib.linux-aarch64-cpython-312/bx/phylo
copying lib/bx/phylo/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/phylo
copying lib/bx/phylo/phast_tests.py -> build/lib.linux-aarch64-cpython-312/bx/phylo
copying lib/bx/phylo/newick.py -> build/lib.linux-aarch64-cpython-312/bx/phylo
copying lib/bx/phylo/newick_tests.py -> build/lib.linux-aarch64-cpython-312/bx/phylo
creating build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/twobit.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/qdna_tests.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/nib.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/seq_tests.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/fasta.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/twobit_tests.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/core.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/qdna.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/fasta_tests.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/nib_tests.py -> build/lib.linux-aarch64-cpython-312/bx/seq
copying lib/bx/seq/seq.py -> build/lib.linux-aarch64-cpython-312/bx/seq
creating build/lib.linux-aarch64-cpython-312/bx/tabular
copying lib/bx/tabular/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/tabular
copying lib/bx/tabular/io.py -> build/lib.linux-aarch64-cpython-312/bx/tabular
creating build/lib.linux-aarch64-cpython-312/bx/arrays
copying lib/bx/arrays/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/arrays
copying lib/bx/arrays/array_tree_tests.py -> build/lib.linux-aarch64-cpython-312/bx/arrays
creating build/lib.linux-aarch64-cpython-312/bx/bbi
copying lib/bx/bbi/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/bbi
copying lib/bx/bbi/bigwig_tests.py -> build/lib.linux-aarch64-cpython-312/bx/bbi
creating build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/find_clusters.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/subtract.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/quicksect.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/coverage.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/merge.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/base_coverage.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/join.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/concat.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/intersect.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
copying lib/bx/intervals/operations/complement.py -> build/lib.linux-aarch64-cpython-312/bx/intervals/operations
creating build/lib.linux-aarch64-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/quality.py -> build/lib.linux-aarch64-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.linux-aarch64-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/core.py -> build/lib.linux-aarch64-cpython-312/bx/align/sitemask
copying lib/bx/align/sitemask/cpg.py -> build/lib.linux-aarch64-cpython-312/bx/align/sitemask
creating build/lib.linux-aarch64-cpython-312/bx/align/tools
copying lib/bx/align/tools/thread.py -> build/lib.linux-aarch64-cpython-312/bx/align/tools
copying lib/bx/align/tools/tile.py -> build/lib.linux-aarch64-cpython-312/bx/align/tools
copying lib/bx/align/tools/fuse.py -> build/lib.linux-aarch64-cpython-312/bx/align/tools
copying lib/bx/align/tools/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/align/tools
copying lib/bx/align/tools/chop.py -> build/lib.linux-aarch64-cpython-312/bx/align/tools
creating build/lib.linux-aarch64-cpython-312/bx/motif/io
copying lib/bx/motif/io/transfac_tests.py -> build/lib.linux-aarch64-cpython-312/bx/motif/io
copying lib/bx/motif/io/transfac.py -> build/lib.linux-aarch64-cpython-312/bx/motif/io
copying lib/bx/motif/io/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/motif/io
creating build/lib.linux-aarch64-cpython-312/bx/motif/logo
copying lib/bx/motif/logo/__init__.py -> build/lib.linux-aarch64-cpython-312/bx/motif/logo
copying lib/bx/motif/logo/template.ps -> build/lib.linux-aarch64-cpython-312/bx/motif/logo
running build_ext
building 'bx.bitset' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/lib
creating build/temp.linux-aarch64-cpython-312/lib/bx
creating build/temp.linux-aarch64-cpython-312/src
creating build/temp.linux-aarch64-cpython-312/src/kent
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c lib/bx/bitset.c -o build/temp.linux-aarch64-cpython-312/lib/bx/bitset.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c src/binBits.c -o build/temp.linux-aarch64-cpython-312/src/binBits.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c src/kent/bits.c -o build/temp.linux-aarch64-cpython-312/src/kent/bits.o
src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $";
| ^~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.12 -c src/kent/common.c -o build/temp.linux-aarch64-cpython-312/src/kent/common.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/bitset.o build/temp.linux-aarch64-cpython-312/src/binBits.o build/temp.linux-aarch64-cpython-312/src/kent/bits.o build/temp.linux-aarch64-cpython-312/src/kent/common.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/bitset.cpython-312-aarch64-linux-gnu.so
building 'bx.intervals.intersection' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/intervals
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/intervals/intersection.c -o build/temp.linux-aarch64-cpython-312/lib/bx/intervals/intersection.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/intervals/intersection.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/intervals/intersection.cpython-312-aarch64-linux-gnu.so
building 'bx.align._core' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/align
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/align/_core.c -o build/temp.linux-aarch64-cpython-312/lib/bx/align/_core.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/align/_core.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/align/_core.cpython-312-aarch64-linux-gnu.so
building 'bx.seq._nib' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/seq
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/seq/_nib.c -o build/temp.linux-aarch64-cpython-312/lib/bx/seq/_nib.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/seq/_nib.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/seq/_nib.cpython-312-aarch64-linux-gnu.so
building 'bx.seq._twobit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/seq/_twobit.c -o build/temp.linux-aarch64-cpython-312/lib/bx/seq/_twobit.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/seq/_twobit.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/seq/_twobit.cpython-312-aarch64-linux-gnu.so
building 'bx._seqmapping' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/_seqmapping.c -o build/temp.linux-aarch64-cpython-312/lib/bx/_seqmapping.o
In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’,
inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:5104:13,
inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:8107:7:
lib/bx/_seqmapping.c:5142:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
5142 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int)))));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.12/Python.h:23,
from lib/bx/_seqmapping.c:29:
/usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/_seqmapping.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/_seqmapping.cpython-312-aarch64-linux-gnu.so
building 'bx.misc.bgzf' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/misc
creating build/temp.linux-aarch64-cpython-312/src/samtools
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.12 -c lib/bx/misc/bgzf.c -o build/temp.linux-aarch64-cpython-312/lib/bx/misc/bgzf.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.12 -c src/samtools/bgzf.c -o build/temp.linux-aarch64-cpython-312/src/samtools/bgzf.o
src/samtools/bgzf.c: In function ‘cache_block’:
src/samtools/bgzf.c:422:47: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) {
| ^
src/samtools/bgzf.c: In function ‘read_block’:
src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
462 | if (count != sizeof(header)) {
| ^~
src/samtools/bgzf.c: In function ‘bgzf_close’:
src/samtools/bgzf.c:603:29: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
603 | int count, block_length = deflate_block(fp, 0);
| ^~~~~
src/samtools/bgzf.c: In function ‘bgzf_check_EOF’:
src/samtools/bgzf.c:662:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
662 | fread(buf, 1, 28, fp->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/misc/bgzf.o build/temp.linux-aarch64-cpython-312/src/samtools/bgzf.o -L/usr/lib/aarch64-linux-gnu -lz -o build/lib.linux-aarch64-cpython-312/bx/misc/bgzf.cpython-312-aarch64-linux-gnu.so
building 'bx.intervals.cluster' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c lib/bx/intervals/cluster.c -o build/temp.linux-aarch64-cpython-312/lib/bx/intervals/cluster.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c src/cluster.c -o build/temp.linux-aarch64-cpython-312/src/cluster.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/intervals/cluster.o build/temp.linux-aarch64-cpython-312/src/cluster.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/intervals/cluster.cpython-312-aarch64-linux-gnu.so
building 'bx.pwm._position_weight_matrix' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/pwm
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-aarch64-cpython-312/lib/bx/pwm/_position_weight_matrix.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c src/pwm_utils.c -o build/temp.linux-aarch64-cpython-312/src/pwm_utils.o
src/pwm_utils.c: In function ‘main’:
src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
12 | if (strlen(argv[2]) != string_size) {
| ^~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-aarch64-cpython-312/src/pwm_utils.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/pwm/_position_weight_matrix.cpython-312-aarch64-linux-gnu.so
building 'bx.motif._pwm' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/motif
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/motif/_pwm.c -o build/temp.linux-aarch64-cpython-312/lib/bx/motif/_pwm.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/motif/_pwm.c:1240:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1483:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
1483 | _import_array(void)
| ^~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/motif/_pwm.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/motif/_pwm.cpython-312-aarch64-linux-gnu.so
building 'bx.arrays.array_tree' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/arrays
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/arrays/array_tree.c -o build/temp.linux-aarch64-cpython-312/lib/bx/arrays/array_tree.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/arrays/array_tree.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/arrays/array_tree.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/arrays/array_tree.cpython-312-aarch64-linux-gnu.so
building 'bx.bbi.bpt_file' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/bbi
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bpt_file.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bpt_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/bbi/bpt_file.cpython-312-aarch64-linux-gnu.so
building 'bx.bbi.cirtree_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-aarch64-cpython-312/lib/bx/bbi/cirtree_file.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/bbi/cirtree_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/bbi/cirtree_file.cpython-312-aarch64-linux-gnu.so
building 'bx.bbi.bbi_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bbi_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bbi_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bbi_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/bbi/bbi_file.cpython-312-aarch64-linux-gnu.so
building 'bx.bbi.bigwig_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bigwig_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bigwig_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’:
lib/bx/bbi/bigwig_file.c:6522:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
6522 | __pyx_t_12 = (__pyx_v_s < __pyx_v_self->start);
| ^
lib/bx/bbi/bigwig_file.c:6551:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
6551 | __pyx_t_12 = (__pyx_v_e > __pyx_v_self->end);
| ^
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’:
lib/bx/bbi/bigwig_file.c:8804:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare]
8804 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
| ^
lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’:
lib/bx/bbi/bigwig_file.c:6551:29: warning: ‘__pyx_v_e’ may be used uninitialized [-Wmaybe-uninitialized]
6551 | __pyx_t_12 = (__pyx_v_e > __pyx_v_self->end);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5856:7: note: ‘__pyx_v_e’ was declared here
5856 | int __pyx_v_e;
| ^~~~~~~~~
lib/bx/bbi/bigwig_file.c:6522:29: warning: ‘__pyx_v_s’ may be used uninitialized [-Wmaybe-uninitialized]
6522 | __pyx_t_12 = (__pyx_v_s < __pyx_v_self->start);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5855:7: note: ‘__pyx_v_s’ was declared here
5855 | int __pyx_v_s;
| ^~~~~~~~~
lib/bx/bbi/bigwig_file.c:6608:18: warning: ‘__pyx_v_val’ may be used uninitialized [-Wmaybe-uninitialized]
6608 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 88, __pyx_L1_error)
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/bx/bbi/bigwig_file.c:5857:9: note: ‘__pyx_v_val’ was declared here
5857 | float __pyx_v_val;
| ^~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bigwig_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/bbi/bigwig_file.cpython-312-aarch64-linux-gnu.so
building 'bx.bbi.bigbed_file' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bigbed_file.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/bbi/bigbed_file.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/bbi/bigbed_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/bbi/bigbed_file.cpython-312-aarch64-linux-gnu.so
building 'bx.align._epo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c lib/bx/align/_epo.c -o build/temp.linux-aarch64-cpython-312/lib/bx/align/_epo.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from lib/bx/align/_epo.c:1249:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’:
lib/bx/align/_epo.c:8904:236: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare]
8904 | __pyx_t_5 = ((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_13, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen);
| ^~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/align/_epo.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/align/_epo.cpython-312-aarch64-linux-gnu.so
building 'bx.arrays.bed' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/arrays/bed.c -o build/temp.linux-aarch64-cpython-312/lib/bx/arrays/bed.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/arrays/bed.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/arrays/bed.cpython-312-aarch64-linux-gnu.so
building 'bx.arrays.wiggle' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/arrays/wiggle.c -o build/temp.linux-aarch64-cpython-312/lib/bx/arrays/wiggle.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/arrays/wiggle.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/arrays/wiggle.cpython-312-aarch64-linux-gnu.so
building 'bx.align.sitemask._cpg' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/align/sitemask
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-aarch64-cpython-312/lib/bx/align/sitemask/_cpg.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-aarch64-cpython-312/lib/bx/align/sitemask/find_cpg.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/align/sitemask/_cpg.o build/temp.linux-aarch64-cpython-312/lib/bx/align/sitemask/find_cpg.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/align/sitemask/_cpg.cpython-312-aarch64-linux-gnu.so
building 'bx.intseq.ngramcount' extension
creating build/temp.linux-aarch64-cpython-312/lib/bx/intseq
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.12 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-aarch64-cpython-312/lib/bx/intseq/ngramcount.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/intseq/ngramcount.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/intseq/ngramcount.cpython-312-aarch64-linux-gnu.so
building 'bx.misc._seekbzip2' extension
creating build/temp.linux-aarch64-cpython-312/src/bunzip
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.12 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-aarch64-cpython-312/lib/bx/misc/_seekbzip2.o
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.12 -c src/bunzip/micro-bunzip.c -o build/temp.linux-aarch64-cpython-312/src/bunzip/micro-bunzip.o
src/bunzip/micro-bunzip.c: In function ‘get_next_block’:
src/bunzip/micro-bunzip.c:151:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
151 | if((origPtr=get_bits(bd,24)) > dbufSize) return RETVAL_DATA_ERROR;
| ^
src/bunzip/micro-bunzip.c:298:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
298 | while (bd->inbufBitCount<hufGroup->maxLen) {
| ^
src/bunzip/micro-bunzip.c:400:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR;
| ^~
src/bunzip/micro-bunzip.c: In function ‘start_bunzip’:
src/bunzip/micro-bunzip.c:629:26: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign]
629 | bd->inbuf=inbuf;
| ^
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/lib/bx/misc/_seekbzip2.o build/temp.linux-aarch64-cpython-312/src/bunzip/micro-bunzip.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/bx/misc/_seekbzip2.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.12
copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.12
copying and adjusting scripts/table_filter.py -> build/scripts-3.12
copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.12
copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.12
copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.12
copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.12
copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.12
copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.12
copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.12
copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.12
copying and adjusting scripts/maf_chunk.py -> build/scripts-3.12
copying and adjusting scripts/bed_coverage.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.12
copying and adjusting scripts/prefix_lines.py -> build/scripts-3.12
copying and adjusting scripts/bed_intersect.py -> build/scripts-3.12
copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.12
copying and adjusting scripts/bed_complement.py -> build/scripts-3.12
copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.12
copying and adjusting scripts/out_to_chain.py -> build/scripts-3.12
copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.12
copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.12
copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.12
copying and adjusting scripts/maf_randomize.py -> build/scripts-3.12
copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.12
copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.12
copying and adjusting scripts/bnMapper.py -> build/scripts-3.12
copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.12
copying and adjusting scripts/pretty_table.py -> build/scripts-3.12
copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.12
copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.12
copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.12
copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.12
copying and adjusting scripts/random_lines.py -> build/scripts-3.12
copying and adjusting scripts/nib_length.py -> build/scripts-3.12
copying and adjusting scripts/maf_count.py -> build/scripts-3.12
copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.12
copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.12
copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.12
copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.12
copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.12
copying and adjusting scripts/align_print_template.py -> build/scripts-3.12
copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.12
copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.12
copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.12
copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.12
copying and adjusting scripts/mask_quality.py -> build/scripts-3.12
copying and adjusting scripts/maf_select.py -> build/scripts-3.12
copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.12
copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.12
copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.12
copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.12
copying and adjusting scripts/maf_tile.py -> build/scripts-3.12
copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.12
copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.12
copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.12
copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.12
copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.12
copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.12
copying and adjusting scripts/line_select.py -> build/scripts-3.12
copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.12
copying and adjusting scripts/maf_filter.py -> build/scripts-3.12
copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.12
copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.12
copying and adjusting scripts/maf_truncate.py -> build/scripts-3.12
copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.12
copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.12
copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.12
copying and adjusting scripts/interval_join.py -> build/scripts-3.12
copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.12
copying and adjusting scripts/maf_build_index.py -> build/scripts-3.12
copying and adjusting scripts/table_add_column.py -> build/scripts-3.12
copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.12
copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.12
copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.12
copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.12
copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.12
copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.12
copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.12
copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.12
copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.12
copying and adjusting scripts/maf_chop.py -> build/scripts-3.12
copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.12
copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.12
copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.12
copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.12
changing mode of build/scripts-3.12/maf_split_by_src.py from 644 to 755
changing mode of build/scripts-3.12/maf_mask_cpg.py from 644 to 755
changing mode of build/scripts-3.12/table_filter.py from 644 to 755
changing mode of build/scripts-3.12/bed_count_overlapping.py from 644 to 755
changing mode of build/scripts-3.12/bed_bigwig_profile.py from 644 to 755
changing mode of build/scripts-3.12/ucsc_gene_table_to_intervals.py from 644 to 755
changing mode of build/scripts-3.12/maf_extract_ranges.py from 644 to 755
changing mode of build/scripts-3.12/maf_translate_chars.py from 644 to 755
changing mode of build/scripts-3.12/get_scores_in_intervals.py from 644 to 755
changing mode of build/scripts-3.12/bed_rand_intersect.py from 644 to 755
changing mode of build/scripts-3.12/maf_tile_2.py from 644 to 755
changing mode of build/scripts-3.12/maf_chunk.py from 644 to 755
changing mode of build/scripts-3.12/bed_coverage.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_array_tree.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_int_seqs.py from 644 to 755
changing mode of build/scripts-3.12/prefix_lines.py from 644 to 755
changing mode of build/scripts-3.12/bed_intersect.py from 644 to 755
changing mode of build/scripts-3.12/maf_limit_to_species.py from 644 to 755
changing mode of build/scripts-3.12/bed_complement.py from 644 to 755
changing mode of build/scripts-3.12/lav_to_axt.py from 644 to 755
changing mode of build/scripts-3.12/out_to_chain.py from 644 to 755
changing mode of build/scripts-3.12/maf_thread_for_species.py from 644 to 755
changing mode of build/scripts-3.12/gene_fourfold_sites.py from 644 to 755
changing mode of build/scripts-3.12/int_seqs_to_char_strings.py from 644 to 755
changing mode of build/scripts-3.12/maf_randomize.py from 644 to 755
changing mode of build/scripts-3.12/interval_count_intersections.py from 644 to 755
changing mode of build/scripts-3.12/maf_extract_chrom_ranges.py from 644 to 755
changing mode of build/scripts-3.12/bnMapper.py from 644 to 755
changing mode of build/scripts-3.12/axt_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/maf_gap_frequency.py from 644 to 755
changing mode of build/scripts-3.12/pretty_table.py from 644 to 755
changing mode of build/scripts-3.12/maf_mapping_word_frequency.py from 644 to 755
changing mode of build/scripts-3.12/maf_col_counts_all.py from 644 to 755
changing mode of build/scripts-3.12/maf_species_in_all_files.py from 644 to 755
changing mode of build/scripts-3.12/nib_intervals_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/bed_diff_basewise_summary.py from 644 to 755
changing mode of build/scripts-3.12/random_lines.py from 644 to 755
changing mode of build/scripts-3.12/nib_length.py from 644 to 755
changing mode of build/scripts-3.12/maf_count.py from 644 to 755
changing mode of build/scripts-3.12/tfloc_summary.py from 644 to 755
changing mode of build/scripts-3.12/maf_shuffle_columns.py from 644 to 755
changing mode of build/scripts-3.12/maf_print_scores.py from 644 to 755
changing mode of build/scripts-3.12/bed_extend_to.py from 644 to 755
changing mode of build/scripts-3.12/maf_word_frequency.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_simple.py from 644 to 755
changing mode of build/scripts-3.12/align_print_template.py from 644 to 755
changing mode of build/scripts-3.12/bed_intersect_basewise.py from 644 to 755
changing mode of build/scripts-3.12/qv_to_bqv.py from 644 to 755
changing mode of build/scripts-3.12/maf_percent_identity.py from 644 to 755
changing mode of build/scripts-3.12/find_in_sorted_file.py from 644 to 755
changing mode of build/scripts-3.12/mask_quality.py from 644 to 755
changing mode of build/scripts-3.12/maf_select.py from 644 to 755
changing mode of build/scripts-3.12/nib_chrom_intervals_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/maf_tile_2bit.py from 644 to 755
changing mode of build/scripts-3.12/bed_count_by_interval.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_chr_binned_array.py from 644 to 755
changing mode of build/scripts-3.12/mMK_bitset.py from 644 to 755
changing mode of build/scripts-3.12/lav_to_maf.py from 644 to 755
changing mode of build/scripts-3.12/maf_tile.py from 644 to 755
changing mode of build/scripts-3.12/maf_covered_ranges.py from 644 to 755
changing mode of build/scripts-3.12/lzop_build_offset_table.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_concat_fasta.py from 644 to 755
changing mode of build/scripts-3.12/axt_to_maf.py from 644 to 755
changing mode of build/scripts-3.12/div_snp_table_chr.py from 644 to 755
changing mode of build/scripts-3.12/axt_extract_ranges.py from 644 to 755
changing mode of build/scripts-3.12/aggregate_scores_in_intervals.py from 644 to 755
changing mode of build/scripts-3.12/line_select.py from 644 to 755
changing mode of build/scripts-3.12/maf_print_chroms.py from 644 to 755
changing mode of build/scripts-3.12/maf_filter.py from 644 to 755
changing mode of build/scripts-3.12/maf_extract_ranges_indexed.py from 644 to 755
changing mode of build/scripts-3.12/maf_div_sites.py from 644 to 755
changing mode of build/scripts-3.12/maf_truncate.py from 644 to 755
changing mode of build/scripts-3.12/axt_to_lav.py from 644 to 755
changing mode of build/scripts-3.12/maf_drop_overlapping.py from 644 to 755
changing mode of build/scripts-3.12/one_field_per_line.py from 644 to 755
changing mode of build/scripts-3.12/interval_join.py from 644 to 755
changing mode of build/scripts-3.12/maf_mean_length_ungapped_piece.py from 644 to 755
changing mode of build/scripts-3.12/maf_build_index.py from 644 to 755
changing mode of build/scripts-3.12/table_add_column.py from 644 to 755
changing mode of build/scripts-3.12/wiggle_to_binned_array.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_axt.py from 644 to 755
changing mode of build/scripts-3.12/maf_interval_alignibility.py from 644 to 755
changing mode of build/scripts-3.12/bed_subtract_basewise.py from 644 to 755
changing mode of build/scripts-3.12/maf_filter_max_wc.py from 644 to 755
changing mode of build/scripts-3.12/maf_region_coverage_by_src.py from 644 to 755
changing mode of build/scripts-3.12/bed_merge_overlapping.py from 644 to 755
changing mode of build/scripts-3.12/bed_build_windows.py from 644 to 755
changing mode of build/scripts-3.12/maf_col_counts.py from 644 to 755
changing mode of build/scripts-3.12/maf_covered_regions.py from 644 to 755
changing mode of build/scripts-3.12/maf_chop.py from 644 to 755
changing mode of build/scripts-3.12/maf_to_fasta.py from 644 to 755
changing mode of build/scripts-3.12/maf_percent_columns_matching.py from 644 to 755
changing mode of build/scripts-3.12/maf_gc_content.py from 644 to 755
changing mode of build/scripts-3.12/bed_coverage_by_interval.py from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/bx
creating build/bdist.linux-aarch64/wheel/bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/cluster.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/random_intervals.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/cluster_tests.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/intersection_tests.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/io.py -> build/bdist.linux-aarch64/wheel/./bx/intervals
copying build/lib.linux-aarch64-cpython-312/bx/intervals/intersection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intervals
creating build/bdist.linux-aarch64/wheel/bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/find_clusters.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/subtract.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/quicksect.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/coverage.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/merge.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/base_coverage.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/join.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/concat.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/intersect.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/intervals/operations/complement.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations
copying build/lib.linux-aarch64-cpython-312/bx/wiggle.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/pwm_score_maf.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/bed_score_aligned_pwm.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/pwm_score_motifs.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/maf_select_motifs.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/pwm_tests.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/position_weight_matrix.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/pwm_score_positions.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/_position_weight_matrix.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/pwm/bed_score_aligned_string.py -> build/bdist.linux-aarch64/wheel/./bx/pwm
copying build/lib.linux-aarch64-cpython-312/bx/binned_array.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/intseq
copying build/lib.linux-aarch64-cpython-312/bx/intseq/ngramcount.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intseq
copying build/lib.linux-aarch64-cpython-312/bx/intseq/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intseq
copying build/lib.linux-aarch64-cpython-312/bx/bitset.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/align
creating build/bdist.linux-aarch64/wheel/bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/sitemask/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/sitemask/quality.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/sitemask/sitemask_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/sitemask/_cpg.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/sitemask/core.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/sitemask/cpg.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask
copying build/lib.linux-aarch64-cpython-312/bx/align/axt.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/lav.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/epo_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/score_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/score.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/_core.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/_epo.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align
creating build/bdist.linux-aarch64/wheel/bx/align/tools
copying build/lib.linux-aarch64-cpython-312/bx/align/tools/thread.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-312/bx/align/tools/tile.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-312/bx/align/tools/fuse.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-312/bx/align/tools/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-312/bx/align/tools/chop.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools
copying build/lib.linux-aarch64-cpython-312/bx/align/core.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/lav_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/maf.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/maf_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/align/epo.py -> build/bdist.linux-aarch64/wheel/./bx/align
copying build/lib.linux-aarch64-cpython-312/bx/interval_index_file_tests.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/cookbook
copying build/lib.linux-aarch64-cpython-312/bx/cookbook/doc_optparse.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook
copying build/lib.linux-aarch64-cpython-312/bx/cookbook/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook
copying build/lib.linux-aarch64-cpython-312/bx/cookbook/attribute.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook
copying build/lib.linux-aarch64-cpython-312/bx/__init__.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/bitset_builders.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/gene_reader.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/seqmapping_tests.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/bitset_utils.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/interval_index_file.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/bgzf_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/filecache_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/cdb.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/seeklzop_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/seekbzip2.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/filecache.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/readlengths.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/seekbzip2_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/binary_file.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/bgzf.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/seeklzop.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/_seekbzip2.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/misc/cdb_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc
copying build/lib.linux-aarch64-cpython-312/bx/binned_array_tests.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/_seqmapping.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/seqmapping.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/motif
copying build/lib.linux-aarch64-cpython-312/bx/motif/pwm.py -> build/bdist.linux-aarch64/wheel/./bx/motif
copying build/lib.linux-aarch64-cpython-312/bx/motif/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif
copying build/lib.linux-aarch64-cpython-312/bx/motif/pwm_tests.py -> build/bdist.linux-aarch64/wheel/./bx/motif
copying build/lib.linux-aarch64-cpython-312/bx/motif/_pwm.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/motif
creating build/bdist.linux-aarch64/wheel/bx/motif/io
copying build/lib.linux-aarch64-cpython-312/bx/motif/io/transfac_tests.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io
copying build/lib.linux-aarch64-cpython-312/bx/motif/io/transfac.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io
copying build/lib.linux-aarch64-cpython-312/bx/motif/io/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io
creating build/bdist.linux-aarch64/wheel/bx/motif/logo
copying build/lib.linux-aarch64-cpython-312/bx/motif/logo/template.ps -> build/bdist.linux-aarch64/wheel/./bx/motif/logo
copying build/lib.linux-aarch64-cpython-312/bx/motif/logo/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif/logo
creating build/bdist.linux-aarch64/wheel/bx/phylo
copying build/lib.linux-aarch64-cpython-312/bx/phylo/phast.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-312/bx/phylo/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-312/bx/phylo/phast_tests.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-312/bx/phylo/newick.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-312/bx/phylo/newick_tests.py -> build/bdist.linux-aarch64/wheel/./bx/phylo
copying build/lib.linux-aarch64-cpython-312/bx/bitset_tests.py -> build/bdist.linux-aarch64/wheel/./bx
copying build/lib.linux-aarch64-cpython-312/bx/wiggle_tests.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/twobit.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/qdna_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/_twobit.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/_nib.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/nib.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/seq_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/fasta.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/twobit_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/core.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/qdna.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/fasta_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/nib_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq
copying build/lib.linux-aarch64-cpython-312/bx/seq/seq.py -> build/bdist.linux-aarch64/wheel/./bx/seq
creating build/bdist.linux-aarch64/wheel/bx/tabular
copying build/lib.linux-aarch64-cpython-312/bx/tabular/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/tabular
copying build/lib.linux-aarch64-cpython-312/bx/tabular/io.py -> build/bdist.linux-aarch64/wheel/./bx/tabular
creating build/bdist.linux-aarch64/wheel/bx/arrays
copying build/lib.linux-aarch64-cpython-312/bx/arrays/array_tree.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-312/bx/arrays/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-312/bx/arrays/bed.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-312/bx/arrays/array_tree_tests.py -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-312/bx/arrays/wiggle.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays
copying build/lib.linux-aarch64-cpython-312/bx/filter.py -> build/bdist.linux-aarch64/wheel/./bx
creating build/bdist.linux-aarch64/wheel/bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/bpt_file.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/bbi_file.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/bigbed_file.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/bigwig_file.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/cirtree_file.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi
copying build/lib.linux-aarch64-cpython-312/bx/bbi/bigwig_tests.py -> build/bdist.linux-aarch64/wheel/./bx/bbi
creating build/bdist.linux-aarch64/wheel/bx_extras
copying build/lib.linux-aarch64-cpython-312/bx_extras/fpconst_tests.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-312/bx_extras/pstat.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-312/bx_extras/stats.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-312/bx_extras/__init__.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-312/bx_extras/lrucache.py -> build/bdist.linux-aarch64/wheel/./bx_extras
copying build/lib.linux-aarch64-cpython-312/bx_extras/fpconst.py -> build/bdist.linux-aarch64/wheel/./bx_extras
running install_egg_info
running egg_info
writing lib/bx_python.egg-info/PKG-INFO
writing dependency_links to lib/bx_python.egg-info/dependency_links.txt
writing requirements to lib/bx_python.egg-info/requires.txt
writing top-level names to lib/bx_python.egg-info/top_level.txt
reading manifest file 'lib/bx_python.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'lib/bx_python.egg-info/SOURCES.txt'
Copying lib/bx_python.egg-info to build/bdist.linux-aarch64/wheel/./bx_python-0.13.0.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data
creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_split_by_src.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_mask_cpg.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/table_filter.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_count_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_bigwig_profile.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/ucsc_gene_table_to_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_extract_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_translate_chars.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/get_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_rand_intersect.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_tile_2.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_chunk.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_coverage.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_array_tree.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_int_seqs.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/prefix_lines.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_intersect.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_limit_to_species.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_complement.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/lav_to_axt.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/out_to_chain.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_thread_for_species.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/gene_fourfold_sites.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/int_seqs_to_char_strings.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_randomize.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/interval_count_intersections.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_extract_chrom_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bnMapper.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_gap_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/pretty_table.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_mapping_word_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_col_counts_all.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_species_in_all_files.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/nib_intervals_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_diff_basewise_summary.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/random_lines.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/nib_length.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_count.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/tfloc_summary.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_shuffle_columns.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_print_scores.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_extend_to.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_word_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_simple.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/align_print_template.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_intersect_basewise.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/qv_to_bqv.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_percent_identity.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/find_in_sorted_file.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/mask_quality.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_select.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/nib_chrom_intervals_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_tile_2bit.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_count_by_interval.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_chr_binned_array.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/mMK_bitset.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/lav_to_maf.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_tile.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_covered_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/lzop_build_offset_table.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_concat_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_to_maf.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/div_snp_table_chr.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_extract_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/aggregate_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/line_select.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_print_chroms.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_filter.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_extract_ranges_indexed.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_div_sites.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_truncate.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/axt_to_lav.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_drop_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/one_field_per_line.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/interval_join.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_mean_length_ungapped_piece.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_build_index.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/table_add_column.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/wiggle_to_binned_array.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_axt.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_interval_alignibility.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_subtract_basewise.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_filter_max_wc.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_region_coverage_by_src.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_merge_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_build_windows.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_col_counts.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_covered_regions.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_chop.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_percent_columns_matching.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/maf_gc_content.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
copying build/scripts-3.12/bed_coverage_by_interval.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_split_by_src.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mask_cpg.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/table_filter.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_count_overlapping.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_bigwig_profile.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_translate_chars.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/get_scores_in_intervals.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_rand_intersect.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile_2.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_chunk.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_coverage.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_int_seqs.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/prefix_lines.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_intersect.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_limit_to_species.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_complement.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lav_to_axt.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/out_to_chain.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_thread_for_species.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/gene_fourfold_sites.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_randomize.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/interval_count_intersections.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bnMapper.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_gap_frequency.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/pretty_table.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_col_counts_all.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_species_in_all_files.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/random_lines.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_length.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_count.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/tfloc_summary.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_shuffle_columns.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_print_scores.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_extend_to.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_word_frequency.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_simple.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/align_print_template.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_intersect_basewise.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/qv_to_bqv.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_percent_identity.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/find_in_sorted_file.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/mask_quality.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_select.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile_2bit.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_count_by_interval.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/mMK_bitset.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lav_to_maf.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_covered_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lzop_build_offset_table.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_maf.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/div_snp_table_chr.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_extract_ranges.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/line_select.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_print_chroms.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_filter.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_div_sites.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_truncate.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_lav.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_drop_overlapping.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/one_field_per_line.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/interval_join.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_build_index.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/table_add_column.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_axt.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_interval_alignibility.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_subtract_basewise.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_filter_max_wc.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_merge_overlapping.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_build_windows.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_col_counts.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_covered_regions.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_chop.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_fasta.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_gc_content.py to 755
changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py to 755
creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_bx-python/.tmp-c1dsazvl/bx_python-0.13.0-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'bx/__init__.py'
adding 'bx/_seqmapping.cpython-312-aarch64-linux-gnu.so'
adding 'bx/binned_array.py'
adding 'bx/binned_array_tests.py'
adding 'bx/bitset.cpython-312-aarch64-linux-gnu.so'
adding 'bx/bitset_builders.py'
adding 'bx/bitset_tests.py'
adding 'bx/bitset_utils.py'
adding 'bx/filter.py'
adding 'bx/gene_reader.py'
adding 'bx/interval_index_file.py'
adding 'bx/interval_index_file_tests.py'
adding 'bx/seqmapping.py'
adding 'bx/seqmapping_tests.py'
adding 'bx/wiggle.py'
adding 'bx/wiggle_tests.py'
adding 'bx/align/__init__.py'
adding 'bx/align/_core.cpython-312-aarch64-linux-gnu.so'
adding 'bx/align/_epo.cpython-312-aarch64-linux-gnu.so'
adding 'bx/align/axt.py'
adding 'bx/align/core.py'
adding 'bx/align/epo.py'
adding 'bx/align/epo_tests.py'
adding 'bx/align/lav.py'
adding 'bx/align/lav_tests.py'
adding 'bx/align/maf.py'
adding 'bx/align/maf_tests.py'
adding 'bx/align/score.py'
adding 'bx/align/score_tests.py'
adding 'bx/align/sitemask/__init__.py'
adding 'bx/align/sitemask/_cpg.cpython-312-aarch64-linux-gnu.so'
adding 'bx/align/sitemask/core.py'
adding 'bx/align/sitemask/cpg.py'
adding 'bx/align/sitemask/quality.py'
adding 'bx/align/sitemask/sitemask_tests.py'
adding 'bx/align/tools/__init__.py'
adding 'bx/align/tools/chop.py'
adding 'bx/align/tools/fuse.py'
adding 'bx/align/tools/thread.py'
adding 'bx/align/tools/tile.py'
adding 'bx/arrays/__init__.py'
adding 'bx/arrays/array_tree.cpython-312-aarch64-linux-gnu.so'
adding 'bx/arrays/array_tree_tests.py'
adding 'bx/arrays/bed.cpython-312-aarch64-linux-gnu.so'
adding 'bx/arrays/wiggle.cpython-312-aarch64-linux-gnu.so'
adding 'bx/bbi/__init__.py'
adding 'bx/bbi/bbi_file.cpython-312-aarch64-linux-gnu.so'
adding 'bx/bbi/bigbed_file.cpython-312-aarch64-linux-gnu.so'
adding 'bx/bbi/bigwig_file.cpython-312-aarch64-linux-gnu.so'
adding 'bx/bbi/bigwig_tests.py'
adding 'bx/bbi/bpt_file.cpython-312-aarch64-linux-gnu.so'
adding 'bx/bbi/cirtree_file.cpython-312-aarch64-linux-gnu.so'
adding 'bx/cookbook/__init__.py'
adding 'bx/cookbook/attribute.py'
adding 'bx/cookbook/doc_optparse.py'
adding 'bx/intervals/__init__.py'
adding 'bx/intervals/cluster.cpython-312-aarch64-linux-gnu.so'
adding 'bx/intervals/cluster_tests.py'
adding 'bx/intervals/intersection.cpython-312-aarch64-linux-gnu.so'
adding 'bx/intervals/intersection_tests.py'
adding 'bx/intervals/io.py'
adding 'bx/intervals/random_intervals.py'
adding 'bx/intervals/operations/__init__.py'
adding 'bx/intervals/operations/base_coverage.py'
adding 'bx/intervals/operations/complement.py'
adding 'bx/intervals/operations/concat.py'
adding 'bx/intervals/operations/coverage.py'
adding 'bx/intervals/operations/find_clusters.py'
adding 'bx/intervals/operations/intersect.py'
adding 'bx/intervals/operations/join.py'
adding 'bx/intervals/operations/merge.py'
adding 'bx/intervals/operations/quicksect.py'
adding 'bx/intervals/operations/subtract.py'
adding 'bx/intseq/__init__.py'
adding 'bx/intseq/ngramcount.cpython-312-aarch64-linux-gnu.so'
adding 'bx/misc/__init__.py'
adding 'bx/misc/_seekbzip2.cpython-312-aarch64-linux-gnu.so'
adding 'bx/misc/bgzf.cpython-312-aarch64-linux-gnu.so'
adding 'bx/misc/bgzf_tests.py'
adding 'bx/misc/binary_file.py'
adding 'bx/misc/cdb.py'
adding 'bx/misc/cdb_tests.py'
adding 'bx/misc/filecache.py'
adding 'bx/misc/filecache_tests.py'
adding 'bx/misc/readlengths.py'
adding 'bx/misc/seekbzip2.py'
adding 'bx/misc/seekbzip2_tests.py'
adding 'bx/misc/seeklzop.py'
adding 'bx/misc/seeklzop_tests.py'
adding 'bx/motif/__init__.py'
adding 'bx/motif/_pwm.cpython-312-aarch64-linux-gnu.so'
adding 'bx/motif/pwm.py'
adding 'bx/motif/pwm_tests.py'
adding 'bx/motif/io/__init__.py'
adding 'bx/motif/io/transfac.py'
adding 'bx/motif/io/transfac_tests.py'
adding 'bx/motif/logo/__init__.py'
adding 'bx/motif/logo/template.ps'
adding 'bx/phylo/__init__.py'
adding 'bx/phylo/newick.py'
adding 'bx/phylo/newick_tests.py'
adding 'bx/phylo/phast.py'
adding 'bx/phylo/phast_tests.py'
adding 'bx/pwm/__init__.py'
adding 'bx/pwm/_position_weight_matrix.cpython-312-aarch64-linux-gnu.so'
adding 'bx/pwm/bed_score_aligned_pwm.py'
adding 'bx/pwm/bed_score_aligned_string.py'
adding 'bx/pwm/maf_select_motifs.py'
adding 'bx/pwm/position_weight_matrix.py'
adding 'bx/pwm/pwm_score_maf.py'
adding 'bx/pwm/pwm_score_motifs.py'
adding 'bx/pwm/pwm_score_positions.py'
adding 'bx/pwm/pwm_tests.py'
adding 'bx/seq/__init__.py'
adding 'bx/seq/_nib.cpython-312-aarch64-linux-gnu.so'
adding 'bx/seq/_twobit.cpython-312-aarch64-linux-gnu.so'
adding 'bx/seq/core.py'
adding 'bx/seq/fasta.py'
adding 'bx/seq/fasta_tests.py'
adding 'bx/seq/nib.py'
adding 'bx/seq/nib_tests.py'
adding 'bx/seq/qdna.py'
adding 'bx/seq/qdna_tests.py'
adding 'bx/seq/seq.py'
adding 'bx/seq/seq_tests.py'
adding 'bx/seq/twobit.py'
adding 'bx/seq/twobit_tests.py'
adding 'bx/tabular/__init__.py'
adding 'bx/tabular/io.py'
adding 'bx_extras/__init__.py'
adding 'bx_extras/fpconst.py'
adding 'bx_extras/fpconst_tests.py'
adding 'bx_extras/lrucache.py'
adding 'bx_extras/pstat.py'
adding 'bx_extras/stats.py'
adding 'bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py'
adding 'bx_python-0.13.0.data/scripts/align_print_template.py'
adding 'bx_python-0.13.0.data/scripts/axt_extract_ranges.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_lav.py'
adding 'bx_python-0.13.0.data/scripts/axt_to_maf.py'
adding 'bx_python-0.13.0.data/scripts/bed_bigwig_profile.py'
adding 'bx_python-0.13.0.data/scripts/bed_build_windows.py'
adding 'bx_python-0.13.0.data/scripts/bed_complement.py'
adding 'bx_python-0.13.0.data/scripts/bed_count_by_interval.py'
adding 'bx_python-0.13.0.data/scripts/bed_count_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/bed_coverage.py'
adding 'bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py'
adding 'bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py'
adding 'bx_python-0.13.0.data/scripts/bed_extend_to.py'
adding 'bx_python-0.13.0.data/scripts/bed_intersect.py'
adding 'bx_python-0.13.0.data/scripts/bed_intersect_basewise.py'
adding 'bx_python-0.13.0.data/scripts/bed_merge_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/bed_rand_intersect.py'
adding 'bx_python-0.13.0.data/scripts/bed_subtract_basewise.py'
adding 'bx_python-0.13.0.data/scripts/bnMapper.py'
adding 'bx_python-0.13.0.data/scripts/div_snp_table_chr.py'
adding 'bx_python-0.13.0.data/scripts/find_in_sorted_file.py'
adding 'bx_python-0.13.0.data/scripts/gene_fourfold_sites.py'
adding 'bx_python-0.13.0.data/scripts/get_scores_in_intervals.py'
adding 'bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py'
adding 'bx_python-0.13.0.data/scripts/interval_count_intersections.py'
adding 'bx_python-0.13.0.data/scripts/interval_join.py'
adding 'bx_python-0.13.0.data/scripts/lav_to_axt.py'
adding 'bx_python-0.13.0.data/scripts/lav_to_maf.py'
adding 'bx_python-0.13.0.data/scripts/line_select.py'
adding 'bx_python-0.13.0.data/scripts/lzop_build_offset_table.py'
adding 'bx_python-0.13.0.data/scripts/mMK_bitset.py'
adding 'bx_python-0.13.0.data/scripts/maf_build_index.py'
adding 'bx_python-0.13.0.data/scripts/maf_chop.py'
adding 'bx_python-0.13.0.data/scripts/maf_chunk.py'
adding 'bx_python-0.13.0.data/scripts/maf_col_counts.py'
adding 'bx_python-0.13.0.data/scripts/maf_col_counts_all.py'
adding 'bx_python-0.13.0.data/scripts/maf_count.py'
adding 'bx_python-0.13.0.data/scripts/maf_covered_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_covered_regions.py'
adding 'bx_python-0.13.0.data/scripts/maf_div_sites.py'
adding 'bx_python-0.13.0.data/scripts/maf_drop_overlapping.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges.py'
adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py'
adding 'bx_python-0.13.0.data/scripts/maf_filter.py'
adding 'bx_python-0.13.0.data/scripts/maf_filter_max_wc.py'
adding 'bx_python-0.13.0.data/scripts/maf_gap_frequency.py'
adding 'bx_python-0.13.0.data/scripts/maf_gc_content.py'
adding 'bx_python-0.13.0.data/scripts/maf_interval_alignibility.py'
adding 'bx_python-0.13.0.data/scripts/maf_limit_to_species.py'
adding 'bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py'
adding 'bx_python-0.13.0.data/scripts/maf_mask_cpg.py'
adding 'bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py'
adding 'bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py'
adding 'bx_python-0.13.0.data/scripts/maf_percent_identity.py'
adding 'bx_python-0.13.0.data/scripts/maf_print_chroms.py'
adding 'bx_python-0.13.0.data/scripts/maf_print_scores.py'
adding 'bx_python-0.13.0.data/scripts/maf_randomize.py'
adding 'bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py'
adding 'bx_python-0.13.0.data/scripts/maf_select.py'
adding 'bx_python-0.13.0.data/scripts/maf_shuffle_columns.py'
adding 'bx_python-0.13.0.data/scripts/maf_species_in_all_files.py'
adding 'bx_python-0.13.0.data/scripts/maf_split_by_src.py'
adding 'bx_python-0.13.0.data/scripts/maf_thread_for_species.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile_2.py'
adding 'bx_python-0.13.0.data/scripts/maf_tile_2bit.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_axt.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/maf_to_int_seqs.py'
adding 'bx_python-0.13.0.data/scripts/maf_translate_chars.py'
adding 'bx_python-0.13.0.data/scripts/maf_truncate.py'
adding 'bx_python-0.13.0.data/scripts/maf_word_frequency.py'
adding 'bx_python-0.13.0.data/scripts/mask_quality.py'
adding 'bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py'
adding 'bx_python-0.13.0.data/scripts/nib_length.py'
adding 'bx_python-0.13.0.data/scripts/one_field_per_line.py'
adding 'bx_python-0.13.0.data/scripts/out_to_chain.py'
adding 'bx_python-0.13.0.data/scripts/prefix_lines.py'
adding 'bx_python-0.13.0.data/scripts/pretty_table.py'
adding 'bx_python-0.13.0.data/scripts/qv_to_bqv.py'
adding 'bx_python-0.13.0.data/scripts/random_lines.py'
adding 'bx_python-0.13.0.data/scripts/table_add_column.py'
adding 'bx_python-0.13.0.data/scripts/table_filter.py'
adding 'bx_python-0.13.0.data/scripts/tfloc_summary.py'
adding 'bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py'
adding 'bx_python-0.13.0.data/scripts/wiggle_to_simple.py'
adding 'bx_python-0.13.0.dist-info/LICENSE'
adding 'bx_python-0.13.0.dist-info/METADATA'
adding 'bx_python-0.13.0.dist-info/WHEEL'
adding 'bx_python-0.13.0.dist-info/top_level.txt'
adding 'bx_python-0.13.0.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built bx_python-0.13.0-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.0rc3, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python/build
configfile: pytest.ini
plugins: typeguard-4.3.0, cython-0.1.1
collected 139 items
bx/align/epo_tests.py ..... [ 3%]
bx/align/lav_tests.py . [ 4%]
bx/align/maf_tests.py ........ [ 10%]
bx/align/score_tests.py ..... [ 13%]
bx/align/sitemask/sitemask_tests.py ... [ 15%]
bx/align/tools/fuse.py . [ 16%]
bx/align/tools/thread.py . [ 17%]
bx/arrays/array_tree_tests.py ...... [ 21%]
bx/bbi/bigwig_tests.py ........................... [ 41%]
bx/binned_array_tests.py .... [ 43%]
bx/bitset_tests.py .................. [ 56%]
bx/interval_index_file_tests.py ... [ 58%]
bx/intervals/cluster_tests.py ............. [ 68%]
bx/intervals/intersection_tests.py ............. [ 77%]
bx/intervals/io.py .. [ 79%]
bx/misc/bgzf_tests.py . [ 79%]
bx/misc/cdb_tests.py . [ 80%]
bx/motif/io/transfac_tests.py . [ 81%]
bx/motif/pwm_tests.py ... [ 83%]
bx/phylo/newick_tests.py ........ [ 89%]
bx/phylo/phast_tests.py . [ 89%]
bx/pwm/pwm_tests.py . [ 90%]
bx/seq/fasta_tests.py . [ 91%]
bx/seq/nib_tests.py . [ 92%]
bx/seq/qdna_tests.py . [ 92%]
bx/seq/seq_tests.py .... [ 95%]
bx/seq/twobit_tests.py ... [ 97%]
bx/wiggle_tests.py .. [ 99%]
bx_extras/fpconst_tests.py . [100%]
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead.
self.args, self.args_source = self._decide_args(
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 0.105984 -0.00662042 0.143469 0.111045 0.0322849 0.11452 0.0865186 0.055436 0.141388 0.103004 -0.00350213 0.053879 0.10582 0.0983312 -0.0351239 0.10085 0.110439 0.0451646 -0.00949231 0.0487825 0.042197 -0.00328549 -0.00851082 -0.0437525 0.0618735 -0.0315407 -0.00756448 -0.0523631 0.0432315 0.0228745 0.106009 0.0299314 0.0473805\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 -0.0768488 -0.189129 -0.439008 -0.182524 -0.304712 -0.197935 -0.462124 -0.194633 -0.2882 -0.0570346 -0.0724456 -0.301409 0.0508425 -0.0702441 -0.182524 0.0508425 0.0508425 -0.55459 0.0508425 0.0508425 0.0508425 0.0508425 0.00460946 -0.0152047 -0.0152047 -0.095562 -0.0570346 0.0695559 0.127898 0.000206554 -0.013003 0.0167182 -0.0559341 0.0508425 0.0904709 0.101479 -0.155005 -0.0812521 0.0145168 0.0992772 0.10368 -0.155005 0.002408 -0.0911592 -0.0768488 0.013416 -0.00529754 -0.0702443 0.0013071 -0.0702442 0.0919354 -0.101144 -0.000301097\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 1000 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 0.0508425 0.0112142 -0.164912 -0.206742 -0.171516 -0.671274 -0.206741 -0.415891 0.0508425 -0.411489 -0.197936 0.0508425 -0.446713 -0.219951 -0.704298 -0.200137 -0.189129 -0.41369 -0.162711 0.0508425 -0.164912 -0.195734 0.0508425 -0.440108 -0.162711 0.0508425 0.0508425 0.0508425 -0.191331 -0.200137 -0.164912 0.0508425 0.0508425 0.0508425 0.0508425 -0.909043 -0.200137 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0244236 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.00199526 -0.189129 -0.164912 0.0508425 0.0508425 0.0882693 0.0310285 0.224767 0.136704 -0.136291 -0.237564 0.211558 -0.0174062 0.0508425 0.0508425 -0.162711 0.0508425 0.0508425 0.0772615 0.10368 0.0992772 0.10368 -0.257378 -0.0526318 0.10368 -0.266185 -0.0812515 0.110285 0.0992772 0.0992772 0.101479 0.105882 -0.248571 -0.061438 -0.103268 0.108084 0.10368 -0.285999 -0.0944612 -0.0592364 -0.0746468 0.101479 -0.109872 0.0992773 -0.0592366 -0.081252 -0.0988646 0.101479 -0.081252 -0.0592364 0.0932488 0.090622 -0.0945312 -0.107756 0.090622 -0.0912242 -0.511124 0.090622 -0.0912242 0.090622 -0.117675 0.090622 0.090622 0.222874 0.269162 -0.253234 0.0873158 -0.27307 -0.0284048 0.222874 0.0278022 -0.107756 -0.140819 -0.173882 0.0410276 0.0707842 -0.117675 -0.319359 0.090622 0.090622 -0.120981 0.090622 -0.0746932 -0.226782 0.090622 0.090622 0.090622 -0.0680802 -0.114368 0.090622 -0.0680802 -0.0680802 0.090622 -0.120981 0.090622 -0.296214 0.090622 0.090622 0.090622 -0.438387 -0.0912242 0.090622 0.090622 -0.117675 -0.0978372 0.090622 -0.117675 0.090622 -0.0680802 -0.107756 -0.0945312 0.090622 -0.0680802 -0.101143 -0.0680802 0.090622 0.090622 0.090622 -0.0945312 0.090622 -0.408629 0.090622 -0.0680802 -0.494593 0.090622 -0.319358 0.090622 -0.319358 0.090622 -0.259846 -0.233395 -0.114368 -0.319359 -0.686359 -0.107756 -0.474756 -0.28299 0.090622 0.0773968 -0.107756 0.090622 -0.107756 0.090622 -0.259846 -0.478062 0.090622 0.090622 0.090622 -0.0746932 -0.117675 -0.256539 -0.0383235 -0.0011127 0.0142796 -0.278874 0.180914 0.0081078 0.168571 0.0358806 0.0327948 0.0327948 -0.0937244 0.177828 -0.0937246 -0.118411 0.0420518 0.171657 -0.349848 0.0420524 -0.127668 0.171657 -0.121496 -0.349849 0.171657 0.0111938 -0.288131 -0.306647 0.0420518 0.0451376 0.0358806 0.168571 0.03588 0.0451376 0.029709 0.165485 -0.130754 -0.39305 0.171657 -0.189385 -0.278874 0.0420518 -0.149269 0.171657 0.03588 0.168571 0.0389658 0.0327948 0.177828 -0.275788 0.168571 0.0358806 0.165485 0.0050226 0.020451 -0.109154 0.171657 -0.368363 -0.152355 0.0482234 -0.0998962 -0.315903 0.174743 0.0266226 -0.106067 0.168571 0.0050226 0.171657 -0.118411 0.0451376 0.0358802 -0.130754 -0.263445 -0.235672 -0.093725 -0.115326 -0.346762 0.0266226 0.174743 0.168571 -0.11224 -0.0937244 -0.405394 0.174743 0.165485 0.171657 0.0019368 0.174743 -0.140012 -0.254188 -0.248016 -0.167784 -0.294303 -0.751005 0.0358806 -0.007321 -0.130754 -0.13384 -0.433165 0.171657 -0.084467 -0.121497 -0.0844674 0.168571 -0.11841 -0.204814 0.0144358 0.175076 0.0203854 0.0025374 0.175076 0.172101 0.169126 0.0322848 0.175076 -0.12538 0.005512 -0.238422 -0.122404 0.169126 0.0084868 0.0174106 0.169126 0.160202 0.175076 0.169126 0.0174114 0.0114618 0.166151 0.0322848 0.17805 0.172101 -0.146203 -0.131329 0.169126 -0.0956314 -0.00638721 0.0471594 -0.0956314 0.172101 0.0263356 0.0293106 0.02931 0.169126 -0.101581 -0.0034124 0.10963 0.0947559 0.0947559 -0.0926567 -0.113481 0.0947559 0.0947559 -0.324691 -0.0986067 -0.0867067 0.0947559 0.0947559 0.0947559 0.0947559 0.175076 0.0174106 0.172101 -0.134303 -0.12538 0.0055116 0.0293106 -0.0986064 -0.18785 -0.11348 0.0441846 0.0114618 0.0412098 0.0412098 0.17805 0.169126 0.0471594 0.169126 0.0322852 0.172101 0.175076 0.0501342 0.172101 0.169126 0.17805 0.172101 0.0412092 0.0382344 0.172101 0.172101 0.169126 0.172101 0.172101 0.172101 -0.110506 -0.262221 0.160202 0.166151 0.169126 -0.128354 -0.49723 0.0501342 -0.101582 0.0263356 0.0352596 0.169126 0.166151 0.169126 -0.101529 0.162854 0.162854 0.0227586 0.0333316 0.162854 0.15228 -0.453037 0.0333312 -0.0406811 0.0227586 0.173427 0.16814 -0.11205 -0.11205 0.162854 -0.138483 -0.0961902 0.00689821 -0.466254 -0.11205 -0.262719 -0.0961908 -0.114694 0.16814 -0.38431 -0.178132 0.162854 0.157567 0.16814 0.0201152 0.162854 0.157567 0.025402 0.157567 0.0227586 -0.225713 -0.786094 0.0333318 0.157567 0.009542 0.0333318 0.146994 0.00425521 0.16814 0.15228 0.141707 0.16814 0.00954181 0.0227586 -0.246859 0.0227586 0.15228 -0.001031 0.00425521 -0.143769 0.0227586 0.162854 0.157567 0.0042556 -0.260075 -0.0036752 0.0148286 -0.138484 0.0359752 -0.00103139 0.0333312 -0.109407 -0.233642 0.173427 -0.249502 -0.00103139 0.0439048 -0.238929 0.157567 0.0439048 -0.231 0.178713 0.162854 0.162854 -0.164916 0.162854 0.157567 0.0333312 0.0386182 0.162854 0.0333318 0.0333312 0.0227586 0.0386178 0.0042548 0.0280446 0.0386182 0.16814 0.0439048 0.0095422 0.16814 0.0333316 0.0201152 0.16814 -0.154343 0.162854 0.162465 -0.0009215 0.0293935 -0.473835 -0.091866 -0.097929 0.026362 0.0627401 0.0930551 -0.128244 -0.103992 0.0112045 -0.134307 0.171874 -0.122181 0.177937 0.165811 0.0930551 0.0930551 0.153685 -0.349543 0.0081735 0.0354565 0.168843 0.168843 -0.131276 -0.14037 -0.164622 -0.155527 0.16278 0.0112045 0.16278 0.014236 -0.173717 -0.128244 0.171874 -0.0069845 0.171874 -0.258598 0.0112045 -0.152496 0.0293935 0.0324255 0.0233305 0.165811 0.159748 0.029394 0.00211 -0.113087 0.0384885 0.00514151 -0.107024 0.0445515 0.0051415 -0.134308 0.0293935 0.168843 0.171874 0.165811 0.159748 0.04152 0.177937 0.171874 0.180969 0.0293935 0.0354565 0.174906 0.171874 0.0112045 0.177937 0.047583 0.165811 0.171874 0.165811 0.165811 0.171874 -0.152496 -0.091866 0.174906 -0.152497 -0.234346 -0.125212 -0.094897 -0.0948975 0.171874 0.168843 0.171874 0.171874 0.174906 0.174906 0.180969 -0.0979295 0.168843 0.168843 0.177937 0.174906 -0.000921503 0.165811 0.174906 0.174906 0.165811 0.026362 0.174906 0.0312215 0.168098 -0.000202395 0.172073 0.176049 0.160146 0.0157002 0.172073 0.164122 -0.132723 -0.155251 0.0342532 -0.0956156 0.0276268 0.0157002 -0.0995912 0.0448544 0.164122 0.172073 0.164122 0.164122 0.164122 0.168098 0.0302776 0.172073 0.168098 0.156171 0.0329272 0.176049 0.0223264 0.0289524 -0.0929658 0.172073 0.168098 0.0064232 0.172073 -0.103567 0.034253 0.172073 -0.148625 0.172073 0.0461798 0.0077488 0.176049 0.160146 0.168098 0.164122 0.168098 0.172073 0.168098 0.0501554 0.176049 0.176049 0.0103988 0.160146 0.172073 0.160146 0.168098 0.168098 0.164122 0.172073 0.164122 -0.267892 -0.108869 -0.0916402 0.0382286 -0.000201996 0.164122 0.0369032 0.0395532 0.168098 0.0130492 -0.289096 0.002448 0.0369032 0.0156998 0.172073 0.168098 -0.0956158 0.176049 0.168098 0.168098 -0.299697 -0.104892 0.0117244 0.168098 -0.0823646 0.176049 0.168098 0.168098 0.180024 0.0342532 0.176049 0.0117244 0.160146 0.164122 0.0103988 0.0183508 0.164122 0.164122 0.168098 0.168098 -0.0194568 0.169813 -0.135216 0.155625 0.165084 -0.109205 -0.0950181 -0.239256 -0.229798 -0.0973833 0.0397617 0.165084 0.169813 0.0350326 0.0350326 0.169813 0.0350326 0.0350327 0.0255746 0.165084 0.165084 0.155625 0.160355 0.169813 0.160355 0.165084 0.0397617 0.169813 0.0350327 0.165084 0.0303037 0.0066574 0.169813 0.174542 -0.137581 0.0350327 0.0208455 0.0137508 0.0397617 0.169813 -0.139945 0.0350327 0.169813 -0.118664 -0.139945 0.0208447 -0.00280059 0.0184806 0.169813 -0.267632 0.0255746 0.165084 -0.0997473 0.0113867 0.0066576 0.0208455 0.165084 0.0161158 0.160355 0.150896 0.155625 -0.139945 0.160354 -0.0051655 0.160355 0.0161156 -0.274725 0.165084 -0.27709 0.169813 0.160354 0.160354 0.103605 -0.0477275 -0.00516539 0.169813 -0.142311 0.165084 0.160355 -0.130487 -0.243986 -0.0335404 0.0184806 -0.251079 0.165084 -0.151768 0.169813 0.0255746 0.0303037 0.0350326 0.00192851 -0.106841 0.155625 -0.402411 0.165084 -0.125758 0.0350328 0.0397618 -0.385859 0.0161164 -0.156497 0.160354 -0.0154285 0.15815 -0.0021233 -0.0021233 0.147809 -0.0124635 0.0185574 0.15815 0.0366527 0.16849 0.0159726 -0.0951843 0.16849 0.16849 -0.0072934 -0.15464 -0.273552 -0.00470819 -0.121034 -0.172736 -0.113279 0.0288977 0.0030468 -0.0021225 -0.170151 0.0935237 0.054748 0.054748 0.054748 0.054748 0.054748 -0.400219 -0.0202177 -0.102939 -0.0021233 0.0082177 -0.15981 -0.146884 0.152979 0.15815 -0.149471 -0.167566 0.0237276 -0.0150484 0.15815 0.16849 0.15815 0.152979 -0.118449 -0.0202184 0.0418228 0.152979 0.0288977 -0.242531 0.0237276 0.17366 0.16332 -0.121034 -0.0124635 0.15815 0.15815 0.15815 0.0185575 0.142639 0.15815 0.15815 0.0263125 -0.0925992 0.16849 0.16332 0.152979 0.17366 0.15815 -0.00987849 0.16849 -0.0124636 -0.0124636 -0.146885 -0.13396 0.0288977 -0.115864 -0.314913 -0.0253886 0.0237276 0.0366527 0.16849 0.16332 0.16849 0.15815 0.16332\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 1000 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0178189 -0.0152047 -0.0152047 0.0178189 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.23708 0.0508425 0.0508425 0.0178189 0.0508425 0.0508425 -1.02793 -1.01692 0.0508425 0.0508425 -1.23708 -1.20405 0.0508425 -1.20405 0.0508425 0.0508425 0.0178189 -1.20405 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.16002 0.0508425 0.0178189 0.0508425 -1.01692 0.0508425 -1.19305 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.18204 0.0508425 -1.20405 -1.20405 0.0508425 0.0508425 0.0178189 -0.0152047 -0.0152047 -1.16002 0.0508425 -1.20405 -1.19305 0.0508425 -1.20405 0.0508425 0.0508425 0.0508425 -1.14901 0.0508425 0.0508425 0.0508425 0.0508425 -1.19305 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 -1.01692 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.18204 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.20405 -1.14901 0.0508425 0.0508425 0.0508425 0.0508425 -1.01692 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.16002 0.0508425 0.0508425 -1.20405 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.14901 -2.34887 -1.14901 0.0508425 0.0508425 0.0508425 -1.20405 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 0.0508425 0.0508425 0.0508425 0.0508425 -1.14901 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.237976 0.237976 0.237976 0.204953 -0.76374 0.237976 0.271 0.204953 0.204953 0.204953 0.237976 0.271 -0.334433 0.237976 0.237976 0.271 -0.719708 0.204953 0.204953 -0.609628 0.237976 -1.23708 0.0508425 -0.411488 0.204953 0.204953 0.204953 0.237976 0.204953 0.204953 0.204953 0.204953 0.237976 -1.00591 0.237976 0.237976 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.01692 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0838662 0.094874 0.105882 0.105882 0.105882 0.105882 0.094874 0.105882 0.105882 0.094874 0.105882 0.094874 0.094874 0.11689 0.094874 0.094874 0.094874 0.11689 -0.895835 -0.697693 0.105882 0.094874 0.105882 0.11689 0.105882 0.094874 -0.697695 0.11689 0.105882 0.105882 0.105882 0.094874 0.105882 -0.906843 0.094874 0.105882 0.105882 -0.730718 0.094874 0.11689 0.11689 0.0728583 -0.80777 0.11689 0.105882 0.11689 0.11689 0.094874 0.105882 0.105882 0.094874 0.094874 0.094874 0.094874 0.094874 0.094874 0.094874 0.11689 0.105882 0.105882 0.094874 0.105882 0.094874 0.094874 0.11689 0.105882 0.105882 0.105882 0.11689 -0.686685 -0.884825 0.105882 0.105882 0.105882 0.094874 -0.71971 0.105882 0.105882 -0.91785 0.105882 0.094874 0.094874 0.105882 0.11689 0.11689 0.094874 0.094874 0.11689 0.094874 0.105882 0.105882 0.105882 0.105882 0.105882 0.11689 -0.730718 0.105882 -1.02793 0.094874 0.094874 0.094874 0.11689 -0.873818 0.094874 -0.71971 0.11689 0.105882 0.105882 0.11689 0.11689 0.105882 0.094874 -0.80777 0.094874 0.105882 0.11689 0.094874 0.094874 0.094874 0.105882 0.094874 -0.928858 0.0838661 0.0728583 0.0948741 0.094874 0.11689 0.11689 0.105882 0.105882 -0.697695 0.094874 0.094874 0.105882 0.094874 0.105882 0.11689 -0.829788 0.094874 0.105882 -0.906843 0.105882 0.105882 0.105882 0.094874 0.105882 0.105882 0.094874 0.094874 0.11689 0.105882 0.105882 -0.829788 0.094874 0.105882 0.11689 -0.71971 0.105882 0.103756 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.835144 0.090622 0.090622 -0.901269 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.818609 0.090622 0.090622 0.090622\n]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python/build/bx/bbi/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide
assert allclose(sd.sum_data / sd.valid_count, values)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 139 passed, 6 warnings in 4.11s ========================
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_bx-python/build; python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_bx-python/build
configfile: pytest.ini
plugins: typeguard-4.3.0, cython-0.1.1
collected 139 items
bx/align/epo_tests.py ..... [ 3%]
bx/align/lav_tests.py . [ 4%]
bx/align/maf_tests.py ........ [ 10%]
bx/align/score_tests.py ..... [ 13%]
bx/align/sitemask/sitemask_tests.py ... [ 15%]
bx/align/tools/fuse.py . [ 16%]
bx/align/tools/thread.py . [ 17%]
bx/arrays/array_tree_tests.py ...... [ 21%]
bx/bbi/bigwig_tests.py ........................... [ 41%]
bx/binned_array_tests.py .... [ 43%]
bx/bitset_tests.py .................. [ 56%]
bx/interval_index_file_tests.py ... [ 58%]
bx/intervals/cluster_tests.py ............. [ 68%]
bx/intervals/intersection_tests.py ............. [ 77%]
bx/intervals/io.py .. [ 79%]
bx/misc/bgzf_tests.py . [ 79%]
bx/misc/cdb_tests.py . [ 80%]
bx/motif/io/transfac_tests.py . [ 81%]
bx/motif/pwm_tests.py ... [ 83%]
bx/phylo/newick_tests.py ........ [ 89%]
bx/phylo/phast_tests.py . [ 89%]
bx/pwm/pwm_tests.py . [ 90%]
bx/seq/fasta_tests.py . [ 91%]
bx/seq/nib_tests.py . [ 92%]
bx/seq/qdna_tests.py . [ 92%]
bx/seq/seq_tests.py .... [ 95%]
bx/seq/twobit_tests.py ... [ 97%]
bx/wiggle_tests.py .. [ 99%]
bx_extras/fpconst_tests.py . [100%]
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead.
self.args, self.args_source = self._decide_args(
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 0.105984 -0.00662042 0.143469 0.111045 0.0322849 0.11452 0.0865186 0.055436 0.141388 0.103004 -0.00350213 0.053879 0.10582 0.0983312 -0.0351239 0.10085 0.110439 0.0451646 -0.00949231 0.0487825 0.042197 -0.00328549 -0.00851082 -0.0437525 0.0618735 -0.0315407 -0.00756448 -0.0523631 0.0432315 0.0228745 0.106009 0.0299314 0.0473805\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 -0.0768488 -0.189129 -0.439008 -0.182524 -0.304712 -0.197935 -0.462124 -0.194633 -0.2882 -0.0570346 -0.0724456 -0.301409 0.0508425 -0.0702441 -0.182524 0.0508425 0.0508425 -0.55459 0.0508425 0.0508425 0.0508425 0.0508425 0.00460946 -0.0152047 -0.0152047 -0.095562 -0.0570346 0.0695559 0.127898 0.000206554 -0.013003 0.0167182 -0.0559341 0.0508425 0.0904709 0.101479 -0.155005 -0.0812521 0.0145168 0.0992772 0.10368 -0.155005 0.002408 -0.0911592 -0.0768488 0.013416 -0.00529754 -0.0702443 0.0013071 -0.0702442 0.0919354 -0.101144 -0.000301097\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 1000 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 0.0508425 0.0112142 -0.164912 -0.206742 -0.171516 -0.671274 -0.206741 -0.415891 0.0508425 -0.411489 -0.197936 0.0508425 -0.446713 -0.219951 -0.704298 -0.200137 -0.189129 -0.41369 -0.162711 0.0508425 -0.164912 -0.195734 0.0508425 -0.440108 -0.162711 0.0508425 0.0508425 0.0508425 -0.191331 -0.200137 -0.164912 0.0508425 0.0508425 0.0508425 0.0508425 -0.909043 -0.200137 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0244236 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.00199526 -0.189129 -0.164912 0.0508425 0.0508425 0.0882693 0.0310285 0.224767 0.136704 -0.136291 -0.237564 0.211558 -0.0174062 0.0508425 0.0508425 -0.162711 0.0508425 0.0508425 0.0772615 0.10368 0.0992772 0.10368 -0.257378 -0.0526318 0.10368 -0.266185 -0.0812515 0.110285 0.0992772 0.0992772 0.101479 0.105882 -0.248571 -0.061438 -0.103268 0.108084 0.10368 -0.285999 -0.0944612 -0.0592364 -0.0746468 0.101479 -0.109872 0.0992773 -0.0592366 -0.081252 -0.0988646 0.101479 -0.081252 -0.0592364 0.0932488 0.090622 -0.0945312 -0.107756 0.090622 -0.0912242 -0.511124 0.090622 -0.0912242 0.090622 -0.117675 0.090622 0.090622 0.222874 0.269162 -0.253234 0.0873158 -0.27307 -0.0284048 0.222874 0.0278022 -0.107756 -0.140819 -0.173882 0.0410276 0.0707842 -0.117675 -0.319359 0.090622 0.090622 -0.120981 0.090622 -0.0746932 -0.226782 0.090622 0.090622 0.090622 -0.0680802 -0.114368 0.090622 -0.0680802 -0.0680802 0.090622 -0.120981 0.090622 -0.296214 0.090622 0.090622 0.090622 -0.438387 -0.0912242 0.090622 0.090622 -0.117675 -0.0978372 0.090622 -0.117675 0.090622 -0.0680802 -0.107756 -0.0945312 0.090622 -0.0680802 -0.101143 -0.0680802 0.090622 0.090622 0.090622 -0.0945312 0.090622 -0.408629 0.090622 -0.0680802 -0.494593 0.090622 -0.319358 0.090622 -0.319358 0.090622 -0.259846 -0.233395 -0.114368 -0.319359 -0.686359 -0.107756 -0.474756 -0.28299 0.090622 0.0773968 -0.107756 0.090622 -0.107756 0.090622 -0.259846 -0.478062 0.090622 0.090622 0.090622 -0.0746932 -0.117675 -0.256539 -0.0383235 -0.0011127 0.0142796 -0.278874 0.180914 0.0081078 0.168571 0.0358806 0.0327948 0.0327948 -0.0937244 0.177828 -0.0937246 -0.118411 0.0420518 0.171657 -0.349848 0.0420524 -0.127668 0.171657 -0.121496 -0.349849 0.171657 0.0111938 -0.288131 -0.306647 0.0420518 0.0451376 0.0358806 0.168571 0.03588 0.0451376 0.029709 0.165485 -0.130754 -0.39305 0.171657 -0.189385 -0.278874 0.0420518 -0.149269 0.171657 0.03588 0.168571 0.0389658 0.0327948 0.177828 -0.275788 0.168571 0.0358806 0.165485 0.0050226 0.020451 -0.109154 0.171657 -0.368363 -0.152355 0.0482234 -0.0998962 -0.315903 0.174743 0.0266226 -0.106067 0.168571 0.0050226 0.171657 -0.118411 0.0451376 0.0358802 -0.130754 -0.263445 -0.235672 -0.093725 -0.115326 -0.346762 0.0266226 0.174743 0.168571 -0.11224 -0.0937244 -0.405394 0.174743 0.165485 0.171657 0.0019368 0.174743 -0.140012 -0.254188 -0.248016 -0.167784 -0.294303 -0.751005 0.0358806 -0.007321 -0.130754 -0.13384 -0.433165 0.171657 -0.084467 -0.121497 -0.0844674 0.168571 -0.11841 -0.204814 0.0144358 0.175076 0.0203854 0.0025374 0.175076 0.172101 0.169126 0.0322848 0.175076 -0.12538 0.005512 -0.238422 -0.122404 0.169126 0.0084868 0.0174106 0.169126 0.160202 0.175076 0.169126 0.0174114 0.0114618 0.166151 0.0322848 0.17805 0.172101 -0.146203 -0.131329 0.169126 -0.0956314 -0.00638721 0.0471594 -0.0956314 0.172101 0.0263356 0.0293106 0.02931 0.169126 -0.101581 -0.0034124 0.10963 0.0947559 0.0947559 -0.0926567 -0.113481 0.0947559 0.0947559 -0.324691 -0.0986067 -0.0867067 0.0947559 0.0947559 0.0947559 0.0947559 0.175076 0.0174106 0.172101 -0.134303 -0.12538 0.0055116 0.0293106 -0.0986064 -0.18785 -0.11348 0.0441846 0.0114618 0.0412098 0.0412098 0.17805 0.169126 0.0471594 0.169126 0.0322852 0.172101 0.175076 0.0501342 0.172101 0.169126 0.17805 0.172101 0.0412092 0.0382344 0.172101 0.172101 0.169126 0.172101 0.172101 0.172101 -0.110506 -0.262221 0.160202 0.166151 0.169126 -0.128354 -0.49723 0.0501342 -0.101582 0.0263356 0.0352596 0.169126 0.166151 0.169126 -0.101529 0.162854 0.162854 0.0227586 0.0333316 0.162854 0.15228 -0.453037 0.0333312 -0.0406811 0.0227586 0.173427 0.16814 -0.11205 -0.11205 0.162854 -0.138483 -0.0961902 0.00689821 -0.466254 -0.11205 -0.262719 -0.0961908 -0.114694 0.16814 -0.38431 -0.178132 0.162854 0.157567 0.16814 0.0201152 0.162854 0.157567 0.025402 0.157567 0.0227586 -0.225713 -0.786094 0.0333318 0.157567 0.009542 0.0333318 0.146994 0.00425521 0.16814 0.15228 0.141707 0.16814 0.00954181 0.0227586 -0.246859 0.0227586 0.15228 -0.001031 0.00425521 -0.143769 0.0227586 0.162854 0.157567 0.0042556 -0.260075 -0.0036752 0.0148286 -0.138484 0.0359752 -0.00103139 0.0333312 -0.109407 -0.233642 0.173427 -0.249502 -0.00103139 0.0439048 -0.238929 0.157567 0.0439048 -0.231 0.178713 0.162854 0.162854 -0.164916 0.162854 0.157567 0.0333312 0.0386182 0.162854 0.0333318 0.0333312 0.0227586 0.0386178 0.0042548 0.0280446 0.0386182 0.16814 0.0439048 0.0095422 0.16814 0.0333316 0.0201152 0.16814 -0.154343 0.162854 0.162465 -0.0009215 0.0293935 -0.473835 -0.091866 -0.097929 0.026362 0.0627401 0.0930551 -0.128244 -0.103992 0.0112045 -0.134307 0.171874 -0.122181 0.177937 0.165811 0.0930551 0.0930551 0.153685 -0.349543 0.0081735 0.0354565 0.168843 0.168843 -0.131276 -0.14037 -0.164622 -0.155527 0.16278 0.0112045 0.16278 0.014236 -0.173717 -0.128244 0.171874 -0.0069845 0.171874 -0.258598 0.0112045 -0.152496 0.0293935 0.0324255 0.0233305 0.165811 0.159748 0.029394 0.00211 -0.113087 0.0384885 0.00514151 -0.107024 0.0445515 0.0051415 -0.134308 0.0293935 0.168843 0.171874 0.165811 0.159748 0.04152 0.177937 0.171874 0.180969 0.0293935 0.0354565 0.174906 0.171874 0.0112045 0.177937 0.047583 0.165811 0.171874 0.165811 0.165811 0.171874 -0.152496 -0.091866 0.174906 -0.152497 -0.234346 -0.125212 -0.094897 -0.0948975 0.171874 0.168843 0.171874 0.171874 0.174906 0.174906 0.180969 -0.0979295 0.168843 0.168843 0.177937 0.174906 -0.000921503 0.165811 0.174906 0.174906 0.165811 0.026362 0.174906 0.0312215 0.168098 -0.000202395 0.172073 0.176049 0.160146 0.0157002 0.172073 0.164122 -0.132723 -0.155251 0.0342532 -0.0956156 0.0276268 0.0157002 -0.0995912 0.0448544 0.164122 0.172073 0.164122 0.164122 0.164122 0.168098 0.0302776 0.172073 0.168098 0.156171 0.0329272 0.176049 0.0223264 0.0289524 -0.0929658 0.172073 0.168098 0.0064232 0.172073 -0.103567 0.034253 0.172073 -0.148625 0.172073 0.0461798 0.0077488 0.176049 0.160146 0.168098 0.164122 0.168098 0.172073 0.168098 0.0501554 0.176049 0.176049 0.0103988 0.160146 0.172073 0.160146 0.168098 0.168098 0.164122 0.172073 0.164122 -0.267892 -0.108869 -0.0916402 0.0382286 -0.000201996 0.164122 0.0369032 0.0395532 0.168098 0.0130492 -0.289096 0.002448 0.0369032 0.0156998 0.172073 0.168098 -0.0956158 0.176049 0.168098 0.168098 -0.299697 -0.104892 0.0117244 0.168098 -0.0823646 0.176049 0.168098 0.168098 0.180024 0.0342532 0.176049 0.0117244 0.160146 0.164122 0.0103988 0.0183508 0.164122 0.164122 0.168098 0.168098 -0.0194568 0.169813 -0.135216 0.155625 0.165084 -0.109205 -0.0950181 -0.239256 -0.229798 -0.0973833 0.0397617 0.165084 0.169813 0.0350326 0.0350326 0.169813 0.0350326 0.0350327 0.0255746 0.165084 0.165084 0.155625 0.160355 0.169813 0.160355 0.165084 0.0397617 0.169813 0.0350327 0.165084 0.0303037 0.0066574 0.169813 0.174542 -0.137581 0.0350327 0.0208455 0.0137508 0.0397617 0.169813 -0.139945 0.0350327 0.169813 -0.118664 -0.139945 0.0208447 -0.00280059 0.0184806 0.169813 -0.267632 0.0255746 0.165084 -0.0997473 0.0113867 0.0066576 0.0208455 0.165084 0.0161158 0.160355 0.150896 0.155625 -0.139945 0.160354 -0.0051655 0.160355 0.0161156 -0.274725 0.165084 -0.27709 0.169813 0.160354 0.160354 0.103605 -0.0477275 -0.00516539 0.169813 -0.142311 0.165084 0.160355 -0.130487 -0.243986 -0.0335404 0.0184806 -0.251079 0.165084 -0.151768 0.169813 0.0255746 0.0303037 0.0350326 0.00192851 -0.106841 0.155625 -0.402411 0.165084 -0.125758 0.0350328 0.0397618 -0.385859 0.0161164 -0.156497 0.160354 -0.0154285 0.15815 -0.0021233 -0.0021233 0.147809 -0.0124635 0.0185574 0.15815 0.0366527 0.16849 0.0159726 -0.0951843 0.16849 0.16849 -0.0072934 -0.15464 -0.273552 -0.00470819 -0.121034 -0.172736 -0.113279 0.0288977 0.0030468 -0.0021225 -0.170151 0.0935237 0.054748 0.054748 0.054748 0.054748 0.054748 -0.400219 -0.0202177 -0.102939 -0.0021233 0.0082177 -0.15981 -0.146884 0.152979 0.15815 -0.149471 -0.167566 0.0237276 -0.0150484 0.15815 0.16849 0.15815 0.152979 -0.118449 -0.0202184 0.0418228 0.152979 0.0288977 -0.242531 0.0237276 0.17366 0.16332 -0.121034 -0.0124635 0.15815 0.15815 0.15815 0.0185575 0.142639 0.15815 0.15815 0.0263125 -0.0925992 0.16849 0.16332 0.152979 0.17366 0.15815 -0.00987849 0.16849 -0.0124636 -0.0124636 -0.146885 -0.13396 0.0288977 -0.115864 -0.314913 -0.0253886 0.0237276 0.0366527 0.16849 0.16332 0.16849 0.15815 0.16332\n]
bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 1000 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0178189 -0.0152047 -0.0152047 0.0178189 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.23708 0.0508425 0.0508425 0.0178189 0.0508425 0.0508425 -1.02793 -1.01692 0.0508425 0.0508425 -1.23708 -1.20405 0.0508425 -1.20405 0.0508425 0.0508425 0.0178189 -1.20405 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.16002 0.0508425 0.0178189 0.0508425 -1.01692 0.0508425 -1.19305 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.18204 0.0508425 -1.20405 -1.20405 0.0508425 0.0508425 0.0178189 -0.0152047 -0.0152047 -1.16002 0.0508425 -1.20405 -1.19305 0.0508425 -1.20405 0.0508425 0.0508425 0.0508425 -1.14901 0.0508425 0.0508425 0.0508425 0.0508425 -1.19305 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 -1.01692 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.18204 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.20405 -1.14901 0.0508425 0.0508425 0.0508425 0.0508425 -1.01692 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.16002 0.0508425 0.0508425 -1.20405 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.14901 -2.34887 -1.14901 0.0508425 0.0508425 0.0508425 -1.20405 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 -0.0152047 0.0508425 0.0508425 0.0508425 0.0508425 -1.14901 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.02793 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.237976 0.237976 0.237976 0.204953 -0.76374 0.237976 0.271 0.204953 0.204953 0.204953 0.237976 0.271 -0.334433 0.237976 0.237976 0.271 -0.719708 0.204953 0.204953 -0.609628 0.237976 -1.23708 0.0508425 -0.411488 0.204953 0.204953 0.204953 0.237976 0.204953 0.204953 0.204953 0.204953 0.237976 -1.00591 0.237976 0.237976 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 -1.01692 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0508425 0.0838662 0.094874 0.105882 0.105882 0.105882 0.105882 0.094874 0.105882 0.105882 0.094874 0.105882 0.094874 0.094874 0.11689 0.094874 0.094874 0.094874 0.11689 -0.895835 -0.697693 0.105882 0.094874 0.105882 0.11689 0.105882 0.094874 -0.697695 0.11689 0.105882 0.105882 0.105882 0.094874 0.105882 -0.906843 0.094874 0.105882 0.105882 -0.730718 0.094874 0.11689 0.11689 0.0728583 -0.80777 0.11689 0.105882 0.11689 0.11689 0.094874 0.105882 0.105882 0.094874 0.094874 0.094874 0.094874 0.094874 0.094874 0.094874 0.11689 0.105882 0.105882 0.094874 0.105882 0.094874 0.094874 0.11689 0.105882 0.105882 0.105882 0.11689 -0.686685 -0.884825 0.105882 0.105882 0.105882 0.094874 -0.71971 0.105882 0.105882 -0.91785 0.105882 0.094874 0.094874 0.105882 0.11689 0.11689 0.094874 0.094874 0.11689 0.094874 0.105882 0.105882 0.105882 0.105882 0.105882 0.11689 -0.730718 0.105882 -1.02793 0.094874 0.094874 0.094874 0.11689 -0.873818 0.094874 -0.71971 0.11689 0.105882 0.105882 0.11689 0.11689 0.105882 0.094874 -0.80777 0.094874 0.105882 0.11689 0.094874 0.094874 0.094874 0.105882 0.094874 -0.928858 0.0838661 0.0728583 0.0948741 0.094874 0.11689 0.11689 0.105882 0.105882 -0.697695 0.094874 0.094874 0.105882 0.094874 0.105882 0.11689 -0.829788 0.094874 0.105882 -0.906843 0.105882 0.105882 0.105882 0.094874 0.105882 0.105882 0.094874 0.094874 0.11689 0.105882 0.105882 -0.829788 0.094874 0.105882 0.11689 -0.71971 0.105882 0.103756 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.835144 0.090622 0.090622 -0.901269 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.818609 0.090622 0.090622 0.090622\n]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_bx-python/build/bx/bbi/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide
assert allclose(sd.sum_data / sd.valid_count, values)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 139 passed, 6 warnings in 4.49s ========================
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-bx/ -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_python3 --shebang=/usr/bin/python3
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_split_by_src.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_mask_cpg.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/table_filter.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_count_overlapping.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_bigwig_profile.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_translate_chars.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/get_scores_in_intervals.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_rand_intersect.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_chunk.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_coverage.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_array_tree.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_int_seqs.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/prefix_lines.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_intersect.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_limit_to_species.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_complement.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/lav_to_axt.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/out_to_chain.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_thread_for_species.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/gene_fourfold_sites.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/int_seqs_to_char_strings.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_randomize.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/interval_count_intersections.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bnMapper.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_gap_frequency.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/pretty_table.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_mapping_word_frequency.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts_all.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_species_in_all_files.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/nib_intervals_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_diff_basewise_summary.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/random_lines.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/nib_length.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_count.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/tfloc_summary.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_shuffle_columns.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_print_scores.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_extend_to.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_word_frequency.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_simple.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/align_print_template.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_intersect_basewise.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/qv_to_bqv.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_percent_identity.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/find_in_sorted_file.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/mask_quality.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_select.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2bit.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_count_by_interval.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/mMK_bitset.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/lav_to_maf.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_tile.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_covered_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/lzop_build_offset_table.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_concat_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_to_maf.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/div_snp_table_chr.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_extract_ranges.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/line_select.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_print_chroms.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_filter.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_div_sites.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_truncate.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/axt_to_lav.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_drop_overlapping.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/one_field_per_line.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/interval_join.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_build_index.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/table_add_column.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_binned_array.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_axt.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_interval_alignibility.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_subtract_basewise.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_filter_max_wc.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_region_coverage_by_src.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_merge_overlapping.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_build_windows.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_covered_regions.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_chop.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_to_fasta.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_percent_columns_matching.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/maf_gc_content.py
I: dh_python3 tools:113: replacing shebang in debian/python3-bx/usr/bin/bed_coverage_by_interval.py
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-bx' in '../python3-bx_0.13.0-1+bd1_arm64.deb'.
dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../python-bx_0.13.0-1+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../python-bx_0.13.0-1+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-04T23:12:21Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-bx_0.13.0-1+bd1_arm64.changes:
-------------------------------------
Format: 1.8
Date: Fri, 04 Oct 2024 23:08:52 +0000
Source: python-bx (0.13.0-1)
Binary: python3-bx python3-bx-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 0.13.0-1+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
python3-bx - library to manage genomic data and its alignment
Changes:
python-bx (0.13.0-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
Checksums-Sha1:
416845e97c7c2db2359b804d4c74621236b4118d 7594 python-bx_0.13.0-1+bd1_arm64.buildinfo
c211a2c142ba80aff478dcd50b648ab75abced77 7396200 python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
f6d88bca46e1a7baee6bbc92a278271f8ccca81b 809732 python3-bx_0.13.0-1+bd1_arm64.deb
Checksums-Sha256:
3089d13a7561ce114ceb2567f81f1dc39db81046a61989d9e965f92417c52987 7594 python-bx_0.13.0-1+bd1_arm64.buildinfo
808adc2e575869bed6ad118d60c25e44f0a22a3d24d00c539e4f99afbf3d13b9 7396200 python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
8ece34009ef20397b406fb28c86e1cbbb720b845e946d839aa69e001208545f8 809732 python3-bx_0.13.0-1+bd1_arm64.deb
Files:
f16e24ef9d793e9b20a9f9da660a9d0f 7594 python optional python-bx_0.13.0-1+bd1_arm64.buildinfo
9a17306deacbd20fdee41b7fe05c59d4 7396200 debug optional python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
e4d550f645350545dae7c686a77a2b2c 809732 python optional python3-bx_0.13.0-1+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: python-bx (0.13.0-1)
Binary: python3-bx python3-bx-dbgsym
Architecture: arm64
Version: 0.13.0-1+bd1
Binary-Only-Changes:
python-bx (0.13.0-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Fri, 04 Oct 2024 23:08:52 +0000
Checksums-Md5:
9a17306deacbd20fdee41b7fe05c59d4 7396200 python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
e4d550f645350545dae7c686a77a2b2c 809732 python3-bx_0.13.0-1+bd1_arm64.deb
Checksums-Sha1:
c211a2c142ba80aff478dcd50b648ab75abced77 7396200 python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
f6d88bca46e1a7baee6bbc92a278271f8ccca81b 809732 python3-bx_0.13.0-1+bd1_arm64.deb
Checksums-Sha256:
808adc2e575869bed6ad118d60c25e44f0a22a3d24d00c539e4f99afbf3d13b9 7396200 python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
8ece34009ef20397b406fb28c86e1cbbb720b845e946d839aa69e001208545f8 809732 python3-bx_0.13.0-1+bd1_arm64.deb
Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Fri, 04 Oct 2024 23:12:21 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.4),
bash (= 5.2.32-1+b1),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.10),
bzip2 (= 1.0.8-6),
coreutils (= 9.4-3.1),
cpp (= 4:14.1.0-2),
cpp-14 (= 14.2.0-5),
cpp-14-aarch64-linux-gnu (= 14.2.0-5),
cpp-aarch64-linux-gnu (= 4:14.1.0-2),
cython3 (= 3.0.11+dfsg-1+debusine1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.1.0-2),
g++-14 (= 14.2.0-5),
g++-14-aarch64-linux-gnu (= 14.2.0-5),
g++-aarch64-linux-gnu (= 4:14.1.0-2),
gcc (= 4:14.1.0-2),
gcc-14 (= 14.2.0-5),
gcc-14-aarch64-linux-gnu (= 14.2.0-5),
gcc-14-base (= 14.2.0-5),
gcc-aarch64-linux-gnu (= 4:14.1.0-2),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.23+nmu2),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-5),
libatomic1 (= 14.2.0-5),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-9),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-2),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-5),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-7),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.191-2),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-5),
libgcc-s1 (= 14.2.0-5),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-5),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgomp1 (= 14.2.0-5),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhwasan0 (= 14.2.0-5),
libicu72 (= 72.1-5),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-5),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
liblsan0 (= 14.2.0-5),
liblzma5 (= 5.6.2-2),
liblzo2-2 (= 2.10-3),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnsl2 (= 1.3.0-3+b2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.38t64 (= 5.38.2-5),
libpipeline1 (= 1.5.8-1),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0~rc3-1),
libpython3.13-dev (= 3.13.0~rc3-1),
libpython3.13-minimal (= 3.13.0~rc3-1),
libpython3.13-stdlib (= 3.13.0~rc3-1),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-5),
libstdc++6 (= 14.2.0-5),
libsystemd0 (= 256.6-1),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-5),
libubsan1 (= 14.2.0-5),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.6-1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.10.12-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.38.2-5),
perl-base (= 5.38.2-5),
perl-modules-5.38 (= 5.38.2-5),
po-debconf (= 1.0.21+nmu1),
pybuild-plugin-pyproject (= 6.20240824),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-build (= 1.2.2-1),
python3-dev (= 3.12.6-1+debusine1),
python3-inflect (= 7.3.1-2),
python3-iniconfig (= 1.1.1-2),
python3-installer (= 0.7.0+dfsg1-3),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-lzo (= 1.15-1+debusine1),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-numpy (= 1:1.26.4+ds-11+bootstrap1),
python3-packaging (= 24.1-1),
python3-pkg-resources (= 74.1.2-2),
python3-pluggy (= 1.5.0-1),
python3-pyparsing (= 3.1.2-1),
python3-pyproject-hooks (= 1.1.0-2),
python3-pytest (= 8.3.3-1),
python3-pytest-cython (= 0.1.1-1),
python3-setuptools (= 74.1.2-2),
python3-toml (= 0.10.2-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-wheel (= 0.44.0-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0~rc3-1),
python3.13-dev (= 3.13.0~rc3-1),
python3.13-minimal (= 3.13.0~rc3-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.10-2),
tar (= 1.35+dfsg-3),
tzdata (= 2024b-1),
util-linux (= 2.40.2-9),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1728083332"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-bx-dbgsym_0.13.0-1+bd1_arm64.deb
----------------------------------------
new Debian package, version 2.0.
size 7396200 bytes: control archive=2592 bytes.
2166 bytes, 12 lines control
4752 bytes, 45 lines md5sums
Package: python3-bx-dbgsym
Source: python-bx (0.13.0-1)
Version: 0.13.0-1+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8135
Depends: python3-bx (= 0.13.0-1+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-bx
Build-Ids: 02185e14ea33e801ae2d82c48da25c97444dc9b6 0311e21a5b7c64fc48c8e6553d194240d4fbe0db 0a7dfe2819bcbb474ddff815f894983e9acbb61c 0eb396cade00cc6bd6ad2d234df8b3211ef00204 0f3ce5668df227428775b0eefc9f74f33a8682ff 25fe80d0d02227d0e2f522796b1baf82f728c80c 28739f9a80012d81b974538a98f2fe1c1afd3f9c 2ce54ce30a46ac781e431bb66b6c6b532b79c91a 2d27bc13665f51297bc579c2f23324f036663da5 3b61bac5c5570737f5c438e4faa2f552c1af0ee0 3c65302be3079ab013f6109162b6769a256a3008 3fa752cdb8a82a9c4713a3aeb69bd107a9e31350 41dd1420fdc1c0e155126098d923be2be8721e13 420992bae74e0c1e8d4e1dcba7f699ef47bd93cd 45eb531030ddc6d144158247f6c35cad49ad44c4 478bd4fca9fab5f99d6d4480f01ef6482c6b5612 4b98d27c015d3cdc2e9f143c8068457ec27e683d 541a1045cb98834f7479e3cfb834b3cbb52e12d0 55ff623baef08f7df363298262545403cc08372d 580a83490f778532dfa75c3968f437f5f2d80957 5ae9bf1651ec5507510ebb96d2228b6847dc499c 611d28032aad0de4c11fc6181dc2dcfb5f3c15ba 668315d43840c0407ef08830c9047ea72bc6bba2 697c8094af8aacc153c34ad16d9ccf1e914fa033 6ed5ccc585f40ab2f238e98f16820d0e6c1bf042 70298f635e290d0bba042a20215a095e6e2e13a8 7e7a66bb7db1c5ad52cb7c6cae2ff7648ab826d1 8a9d6f3d1dadd02e59cfc71086a9621280230a4b 8e169af414ea515ed4a0e8433e2040a1585dff09 92b75aa0c1dbbccc00a60092a7ef8fb9dcc1b07d 97075815fe7e49ce636022660e1557ac645ed719 9b9881e80f76b2de10a3e876442ac165479e4d96 a91faba66cf2b51f099777fabd43d9ca69fec2eb b59fe1e29da8de2d54aa15b5da82446ba9519cc0 bea78b11b9e2432538675381029d3573b87721ed c33badab6d8668789314bb5b2a18f418ea7522bc c5bc27cdf04819ec14c2a0af6317b7c98486a10f d071c9b6cc09f0baeca48df18ff1d2f1f163a4c4 d657dac3e734ab3d71cce506ed0e196ca9cffd31 d7f310eefb96abf1547444372d3d7e55b2963810 e205200aff380828e34a827ce4c4bd921bdcd6e4 e23da5357fc86a908b35f50f2f5eb4cd48368f2d e4ad506d6c7e3c08dc0c87d90e779adc78939946 f5bf096beeef3478879bc82a2bf3420375d4fd01
drwxr-xr-x root/root 0 2024-10-04 23:08 ./
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/02/
-rw-r--r-- root/root 156048 2024-10-04 23:08 ./usr/lib/debug/.build-id/02/185e14ea33e801ae2d82c48da25c97444dc9b6.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/03/
-rw-r--r-- root/root 167112 2024-10-04 23:08 ./usr/lib/debug/.build-id/03/11e21a5b7c64fc48c8e6553d194240d4fbe0db.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root 107048 2024-10-04 23:08 ./usr/lib/debug/.build-id/0a/7dfe2819bcbb474ddff815f894983e9acbb61c.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/0e/
-rw-r--r-- root/root 147240 2024-10-04 23:08 ./usr/lib/debug/.build-id/0e/b396cade00cc6bd6ad2d234df8b3211ef00204.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/0f/
-rw-r--r-- root/root 267880 2024-10-04 23:08 ./usr/lib/debug/.build-id/0f/3ce5668df227428775b0eefc9f74f33a8682ff.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/25/
-rw-r--r-- root/root 85056 2024-10-04 23:08 ./usr/lib/debug/.build-id/25/fe80d0d02227d0e2f522796b1baf82f728c80c.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/28/
-rw-r--r-- root/root 65112 2024-10-04 23:08 ./usr/lib/debug/.build-id/28/739f9a80012d81b974538a98f2fe1c1afd3f9c.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root 55848 2024-10-04 23:08 ./usr/lib/debug/.build-id/2c/e54ce30a46ac781e431bb66b6c6b532b79c91a.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/2d/
-rw-r--r-- root/root 96984 2024-10-04 23:08 ./usr/lib/debug/.build-id/2d/27bc13665f51297bc579c2f23324f036663da5.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/3b/
-rw-r--r-- root/root 94992 2024-10-04 23:08 ./usr/lib/debug/.build-id/3b/61bac5c5570737f5c438e4faa2f552c1af0ee0.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/3c/
-rw-r--r-- root/root 93024 2024-10-04 23:08 ./usr/lib/debug/.build-id/3c/65302be3079ab013f6109162b6769a256a3008.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root 619328 2024-10-04 23:08 ./usr/lib/debug/.build-id/3f/a752cdb8a82a9c4713a3aeb69bd107a9e31350.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/41/
-rw-r--r-- root/root 98752 2024-10-04 23:08 ./usr/lib/debug/.build-id/41/dd1420fdc1c0e155126098d923be2be8721e13.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/42/
-rw-r--r-- root/root 90448 2024-10-04 23:08 ./usr/lib/debug/.build-id/42/0992bae74e0c1e8d4e1dcba7f699ef47bd93cd.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/45/
-rw-r--r-- root/root 89888 2024-10-04 23:08 ./usr/lib/debug/.build-id/45/eb531030ddc6d144158247f6c35cad49ad44c4.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/47/
-rw-r--r-- root/root 59920 2024-10-04 23:08 ./usr/lib/debug/.build-id/47/8bd4fca9fab5f99d6d4480f01ef6482c6b5612.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/4b/
-rw-r--r-- root/root 60808 2024-10-04 23:08 ./usr/lib/debug/.build-id/4b/98d27c015d3cdc2e9f143c8068457ec27e683d.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/54/
-rw-r--r-- root/root 613512 2024-10-04 23:08 ./usr/lib/debug/.build-id/54/1a1045cb98834f7479e3cfb834b3cbb52e12d0.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/55/
-rw-r--r-- root/root 89352 2024-10-04 23:08 ./usr/lib/debug/.build-id/55/ff623baef08f7df363298262545403cc08372d.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/58/
-rw-r--r-- root/root 109112 2024-10-04 23:08 ./usr/lib/debug/.build-id/58/0a83490f778532dfa75c3968f437f5f2d80957.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/5a/
-rw-r--r-- root/root 112768 2024-10-04 23:08 ./usr/lib/debug/.build-id/5a/e9bf1651ec5507510ebb96d2228b6847dc499c.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/61/
-rw-r--r-- root/root 58016 2024-10-04 23:08 ./usr/lib/debug/.build-id/61/1d28032aad0de4c11fc6181dc2dcfb5f3c15ba.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/66/
-rw-r--r-- root/root 246432 2024-10-04 23:08 ./usr/lib/debug/.build-id/66/8315d43840c0407ef08830c9047ea72bc6bba2.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root 377976 2024-10-04 23:08 ./usr/lib/debug/.build-id/69/7c8094af8aacc153c34ad16d9ccf1e914fa033.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/6e/
-rw-r--r-- root/root 175096 2024-10-04 23:08 ./usr/lib/debug/.build-id/6e/d5ccc585f40ab2f238e98f16820d0e6c1bf042.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 518056 2024-10-04 23:08 ./usr/lib/debug/.build-id/70/298f635e290d0bba042a20215a095e6e2e13a8.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/7e/
-rw-r--r-- root/root 253624 2024-10-04 23:08 ./usr/lib/debug/.build-id/7e/7a66bb7db1c5ad52cb7c6cae2ff7648ab826d1.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/8a/
-rw-r--r-- root/root 368880 2024-10-04 23:08 ./usr/lib/debug/.build-id/8a/9d6f3d1dadd02e59cfc71086a9621280230a4b.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/8e/
-rw-r--r-- root/root 512560 2024-10-04 23:08 ./usr/lib/debug/.build-id/8e/169af414ea515ed4a0e8433e2040a1585dff09.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/92/
-rw-r--r-- root/root 222752 2024-10-04 23:08 ./usr/lib/debug/.build-id/92/b75aa0c1dbbccc00a60092a7ef8fb9dcc1b07d.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/97/
-rw-r--r-- root/root 114656 2024-10-04 23:08 ./usr/lib/debug/.build-id/97/075815fe7e49ce636022660e1557ac645ed719.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/9b/
-rw-r--r-- root/root 66152 2024-10-04 23:08 ./usr/lib/debug/.build-id/9b/9881e80f76b2de10a3e876442ac165479e4d96.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/a9/
-rw-r--r-- root/root 170344 2024-10-04 23:08 ./usr/lib/debug/.build-id/a9/1faba66cf2b51f099777fabd43d9ca69fec2eb.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/b5/
-rw-r--r-- root/root 53976 2024-10-04 23:08 ./usr/lib/debug/.build-id/b5/9fe1e29da8de2d54aa15b5da82446ba9519cc0.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/be/
-rw-r--r-- root/root 106360 2024-10-04 23:08 ./usr/lib/debug/.build-id/be/a78b11b9e2432538675381029d3573b87721ed.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/c3/
-rw-r--r-- root/root 249464 2024-10-04 23:08 ./usr/lib/debug/.build-id/c3/3badab6d8668789314bb5b2a18f418ea7522bc.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/c5/
-rw-r--r-- root/root 174376 2024-10-04 23:08 ./usr/lib/debug/.build-id/c5/bc27cdf04819ec14c2a0af6317b7c98486a10f.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/d0/
-rw-r--r-- root/root 170504 2024-10-04 23:08 ./usr/lib/debug/.build-id/d0/71c9b6cc09f0baeca48df18ff1d2f1f163a4c4.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/d6/
-rw-r--r-- root/root 84904 2024-10-04 23:08 ./usr/lib/debug/.build-id/d6/57dac3e734ab3d71cce506ed0e196ca9cffd31.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/d7/
-rw-r--r-- root/root 167072 2024-10-04 23:08 ./usr/lib/debug/.build-id/d7/f310eefb96abf1547444372d3d7e55b2963810.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root 69968 2024-10-04 23:08 ./usr/lib/debug/.build-id/e2/05200aff380828e34a827ce4c4bd921bdcd6e4.debug
-rw-r--r-- root/root 278904 2024-10-04 23:08 ./usr/lib/debug/.build-id/e2/3da5357fc86a908b35f50f2f5eb4cd48368f2d.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/e4/
-rw-r--r-- root/root 260360 2024-10-04 23:08 ./usr/lib/debug/.build-id/e4/ad506d6c7e3c08dc0c87d90e779adc78939946.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.build-id/f5/
-rw-r--r-- root/root 212304 2024-10-04 23:08 ./usr/lib/debug/.build-id/f5/bf096beeef3478879bc82a2bf3420375d4fd01.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root 60192 2024-10-04 23:08 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-bx.debug
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-10-04 23:08 ./usr/share/doc/python3-bx-dbgsym -> python3-bx
python3-bx_0.13.0-1+bd1_arm64.deb
---------------------------------
new Debian package, version 2.0.
size 809732 bytes: control archive=8004 bytes.
1524 bytes, 27 lines control
21679 bytes, 260 lines md5sums
267 bytes, 12 lines * postinst #!/bin/sh
380 bytes, 12 lines * prerm #!/bin/sh
Package: python3-bx
Source: python-bx (0.13.0-1)
Version: 0.13.0-1+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6160
Depends: python3-lzo, libc6 (>= 2.17), zlib1g (>= 1:1.1.4), python3 (<< 3.14), python3 (>= 3.12~), python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3-pyparsing, python3:any
Provides: python3-bx-tools
Section: python
Priority: optional
Homepage: https://github.com/bxlab/bx-python
Description: library to manage genomic data and its alignment
The bx-python project is a Python3 library and associated set of scripts to
allow for rapid implementation of genome scale analyses. The library contains
a variety of useful modules, but the particular strengths are:
* Classes for reading and working with genome-scale multiple local
alignments (in MAF, AXT, and LAV formats)
* Generic data structure for indexing on disk files that contain blocks of
data associated with intervals on various sequences (used, for example, to
provide random access to individual alignments in huge files; optimized
for use over network filesystems)
* Data structures for working with intervals on sequences
* "Binned bitsets" which act just like chromosome sized bit arrays, but
lazily allocate regions and allow large blocks of all set or all unset
bits to be stored compactly
* "Intersecter" for performing fast intersection tests that preserve both
query and target intervals and associated annotation
drwxr-xr-x root/root 0 2024-10-04 23:08 ./
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/bin/
-rwxr-xr-x root/root 4085 2024-10-04 23:08 ./usr/bin/aggregate_scores_in_intervals.py
-rwxr-xr-x root/root 1059 2024-10-04 23:08 ./usr/bin/align_print_template.py
-rwxr-xr-x root/root 1838 2024-10-04 23:08 ./usr/bin/axt_extract_ranges.py
-rwxr-xr-x root/root 1208 2024-10-04 23:08 ./usr/bin/axt_to_fasta.py
-rwxr-xr-x root/root 4280 2024-10-04 23:08 ./usr/bin/axt_to_lav.py
-rwxr-xr-x root/root 4153 2024-10-04 23:08 ./usr/bin/axt_to_maf.py
-rwxr-xr-x root/root 1041 2024-10-04 23:08 ./usr/bin/bed_bigwig_profile.py
-rwxr-xr-x root/root 1621 2024-10-04 23:08 ./usr/bin/bed_build_windows.py
-rwxr-xr-x root/root 1324 2024-10-04 23:08 ./usr/bin/bed_complement.py
-rwxr-xr-x root/root 808 2024-10-04 23:08 ./usr/bin/bed_count_by_interval.py
-rwxr-xr-x root/root 808 2024-10-04 23:08 ./usr/bin/bed_count_overlapping.py
-rwxr-xr-x root/root 610 2024-10-04 23:08 ./usr/bin/bed_coverage.py
-rwxr-xr-x root/root 1318 2024-10-04 23:08 ./usr/bin/bed_coverage_by_interval.py
-rwxr-xr-x root/root 1049 2024-10-04 23:08 ./usr/bin/bed_diff_basewise_summary.py
-rwxr-xr-x root/root 1066 2024-10-04 23:08 ./usr/bin/bed_extend_to.py
-rwxr-xr-x root/root 1957 2024-10-04 23:08 ./usr/bin/bed_intersect.py
-rwxr-xr-x root/root 957 2024-10-04 23:08 ./usr/bin/bed_intersect_basewise.py
-rwxr-xr-x root/root 767 2024-10-04 23:08 ./usr/bin/bed_merge_overlapping.py
-rwxr-xr-x root/root 5620 2024-10-04 23:08 ./usr/bin/bed_rand_intersect.py
-rwxr-xr-x root/root 1015 2024-10-04 23:08 ./usr/bin/bed_subtract_basewise.py
-rwxr-xr-x root/root 17070 2024-10-04 23:08 ./usr/bin/bnMapper.py
-rwxr-xr-x root/root 4951 2024-10-04 23:08 ./usr/bin/div_snp_table_chr.py
-rwxr-xr-x root/root 1947 2024-10-04 23:08 ./usr/bin/find_in_sorted_file.py
-rwxr-xr-x root/root 9235 2024-10-04 23:08 ./usr/bin/gene_fourfold_sites.py
-rwxr-xr-x root/root 1553 2024-10-04 23:08 ./usr/bin/get_scores_in_intervals.py
-rwxr-xr-x root/root 628 2024-10-04 23:08 ./usr/bin/int_seqs_to_char_strings.py
-rwxr-xr-x root/root 1079 2024-10-04 23:08 ./usr/bin/interval_count_intersections.py
-rwxr-xr-x root/root 996 2024-10-04 23:08 ./usr/bin/interval_join.py
-rwxr-xr-x root/root 1254 2024-10-04 23:08 ./usr/bin/lav_to_axt.py
-rwxr-xr-x root/root 1204 2024-10-04 23:08 ./usr/bin/lav_to_maf.py
-rwxr-xr-x root/root 649 2024-10-04 23:08 ./usr/bin/line_select.py
-rwxr-xr-x root/root 2838 2024-10-04 23:08 ./usr/bin/lzop_build_offset_table.py
-rwxr-xr-x root/root 5150 2024-10-04 23:08 ./usr/bin/mMK_bitset.py
-rwxr-xr-x root/root 2748 2024-10-04 23:08 ./usr/bin/maf_build_index.py
-rwxr-xr-x root/root 1495 2024-10-04 23:08 ./usr/bin/maf_chop.py
-rwxr-xr-x root/root 2378 2024-10-04 23:08 ./usr/bin/maf_chunk.py
-rwxr-xr-x root/root 934 2024-10-04 23:08 ./usr/bin/maf_col_counts.py
-rwxr-xr-x root/root 1562 2024-10-04 23:08 ./usr/bin/maf_col_counts_all.py
-rwxr-xr-x root/root 1619 2024-10-04 23:08 ./usr/bin/maf_count.py
-rwxr-xr-x root/root 1454 2024-10-04 23:08 ./usr/bin/maf_covered_ranges.py
-rwxr-xr-x root/root 1809 2024-10-04 23:08 ./usr/bin/maf_covered_regions.py
-rwxr-xr-x root/root 1436 2024-10-04 23:08 ./usr/bin/maf_div_sites.py
-rwxr-xr-x root/root 1176 2024-10-04 23:08 ./usr/bin/maf_drop_overlapping.py
-rwxr-xr-x root/root 2734 2024-10-04 23:08 ./usr/bin/maf_extract_chrom_ranges.py
-rwxr-xr-x root/root 2212 2024-10-04 23:08 ./usr/bin/maf_extract_ranges.py
-rwxr-xr-x root/root 4634 2024-10-04 23:08 ./usr/bin/maf_extract_ranges_indexed.py
-rwxr-xr-x root/root 1568 2024-10-04 23:08 ./usr/bin/maf_filter.py
-rwxr-xr-x root/root 809 2024-10-04 23:08 ./usr/bin/maf_filter_max_wc.py
-rwxr-xr-x root/root 411 2024-10-04 23:08 ./usr/bin/maf_gap_frequency.py
-rwxr-xr-x root/root 586 2024-10-04 23:08 ./usr/bin/maf_gc_content.py
-rwxr-xr-x root/root 3859 2024-10-04 23:08 ./usr/bin/maf_interval_alignibility.py
-rwxr-xr-x root/root 862 2024-10-04 23:08 ./usr/bin/maf_limit_to_species.py
-rwxr-xr-x root/root 1663 2024-10-04 23:08 ./usr/bin/maf_mapping_word_frequency.py
-rwxr-xr-x root/root 1105 2024-10-04 23:08 ./usr/bin/maf_mask_cpg.py
-rwxr-xr-x root/root 714 2024-10-04 23:08 ./usr/bin/maf_mean_length_ungapped_piece.py
-rwxr-xr-x root/root 643 2024-10-04 23:08 ./usr/bin/maf_percent_columns_matching.py
-rwxr-xr-x root/root 798 2024-10-04 23:08 ./usr/bin/maf_percent_identity.py
-rwxr-xr-x root/root 785 2024-10-04 23:08 ./usr/bin/maf_print_chroms.py
-rwxr-xr-x root/root 1543 2024-10-04 23:08 ./usr/bin/maf_print_scores.py
-rwxr-xr-x root/root 691 2024-10-04 23:08 ./usr/bin/maf_randomize.py
-rwxr-xr-x root/root 1834 2024-10-04 23:08 ./usr/bin/maf_region_coverage_by_src.py
-rwxr-xr-x root/root 724 2024-10-04 23:08 ./usr/bin/maf_select.py
-rwxr-xr-x root/root 588 2024-10-04 23:08 ./usr/bin/maf_shuffle_columns.py
-rwxr-xr-x root/root 564 2024-10-04 23:08 ./usr/bin/maf_species_in_all_files.py
-rwxr-xr-x root/root 1583 2024-10-04 23:08 ./usr/bin/maf_split_by_src.py
-rwxr-xr-x root/root 1510 2024-10-04 23:08 ./usr/bin/maf_thread_for_species.py
-rwxr-xr-x root/root 4299 2024-10-04 23:08 ./usr/bin/maf_tile.py
-rwxr-xr-x root/root 11429 2024-10-04 23:08 ./usr/bin/maf_tile_2.py
-rwxr-xr-x root/root 11183 2024-10-04 23:08 ./usr/bin/maf_tile_2bit.py
-rwxr-xr-x root/root 2736 2024-10-04 23:08 ./usr/bin/maf_to_axt.py
-rwxr-xr-x root/root 1736 2024-10-04 23:08 ./usr/bin/maf_to_concat_fasta.py
-rwxr-xr-x root/root 810 2024-10-04 23:08 ./usr/bin/maf_to_fasta.py
-rwxr-xr-x root/root 975 2024-10-04 23:08 ./usr/bin/maf_to_int_seqs.py
-rwxr-xr-x root/root 715 2024-10-04 23:08 ./usr/bin/maf_translate_chars.py
-rwxr-xr-x root/root 762 2024-10-04 23:08 ./usr/bin/maf_truncate.py
-rwxr-xr-x root/root 966 2024-10-04 23:08 ./usr/bin/maf_word_frequency.py
-rwxr-xr-x root/root 2931 2024-10-04 23:08 ./usr/bin/mask_quality.py
-rwxr-xr-x root/root 1044 2024-10-04 23:08 ./usr/bin/nib_chrom_intervals_to_fasta.py
-rwxr-xr-x root/root 813 2024-10-04 23:08 ./usr/bin/nib_intervals_to_fasta.py
-rwxr-xr-x root/root 217 2024-10-04 23:08 ./usr/bin/nib_length.py
-rwxr-xr-x root/root 233 2024-10-04 23:08 ./usr/bin/one_field_per_line.py
-rwxr-xr-x root/root 2527 2024-10-04 23:08 ./usr/bin/out_to_chain.py
-rwxr-xr-x root/root 159 2024-10-04 23:08 ./usr/bin/prefix_lines.py
-rwxr-xr-x root/root 930 2024-10-04 23:08 ./usr/bin/pretty_table.py
-rwxr-xr-x root/root 2093 2024-10-04 23:08 ./usr/bin/qv_to_bqv.py
-rwxr-xr-x root/root 300 2024-10-04 23:08 ./usr/bin/random_lines.py
-rwxr-xr-x root/root 1208 2024-10-04 23:08 ./usr/bin/table_add_column.py
-rwxr-xr-x root/root 2218 2024-10-04 23:08 ./usr/bin/table_filter.py
-rwxr-xr-x root/root 637 2024-10-04 23:08 ./usr/bin/tfloc_summary.py
-rwxr-xr-x root/root 3599 2024-10-04 23:08 ./usr/bin/ucsc_gene_table_to_intervals.py
-rwxr-xr-x root/root 785 2024-10-04 23:08 ./usr/bin/wiggle_to_array_tree.py
-rwxr-xr-x root/root 1290 2024-10-04 23:08 ./usr/bin/wiggle_to_binned_array.py
-rwxr-xr-x root/root 737 2024-10-04 23:08 ./usr/bin/wiggle_to_chr_binned_array.py
-rwxr-xr-x root/root 513 2024-10-04 23:08 ./usr/bin/wiggle_to_simple.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/
-rw-r--r-- root/root 23 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/__init__.py
-rw-r--r-- root/root 136760 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/_seqmapping.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 136760 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/_seqmapping.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/
-rw-r--r-- root/root 224 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/__init__.py
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/_core.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/_core.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 135664 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/_epo.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 135664 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/_epo.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 7609 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/axt.py
-rw-r--r-- root/root 18297 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/core.py
-rw-r--r-- root/root 12048 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/epo.py
-rw-r--r-- root/root 9289 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/epo_tests.py
-rw-r--r-- root/root 21659 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/lav.py
-rw-r--r-- root/root 2487 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/lav_tests.py
-rw-r--r-- root/root 8444 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/maf.py
-rw-r--r-- root/root 11719 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/maf_tests.py
-rw-r--r-- root/root 12035 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/score.py
-rw-r--r-- root/root 3605 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/score_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/
-rw-r--r-- root/root 253 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/__init__.py
-rw-r--r-- root/root 69296 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69296 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 1130 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/core.py
-rw-r--r-- root/root 2710 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/cpg.py
-rw-r--r-- root/root 5648 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/quality.py
-rw-r--r-- root/root 2585 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/sitemask/sitemask_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/tools/
-rw-r--r-- root/root 461 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/tools/__init__.py
-rw-r--r-- root/root 1048 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/tools/chop.py
-rw-r--r-- root/root 3098 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/tools/fuse.py
-rw-r--r-- root/root 3203 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/tools/thread.py
-rw-r--r-- root/root 2834 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/align/tools/tile.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/
-rw-r--r-- root/root 49 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/__init__.py
-rw-r--r-- root/root 337664 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 272128 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 3900 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/array_tree_tests.py
-rw-r--r-- root/root 69712 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/bed.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69712 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/bed.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 135280 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 135280 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/
-rw-r--r-- root/root 83 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/__init__.py
-rw-r--r-- root/root 270208 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 270208 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 137072 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 137072 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 204072 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 204072 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 3715 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bigwig_tests.py
-rw-r--r-- root/root 135408 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 135408 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 135536 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 135536 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 12391 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/binned_array.py
-rw-r--r-- root/root 3896 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/binned_array_tests.py
-rw-r--r-- root/root 137800 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bitset.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 137800 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bitset.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 5772 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bitset_builders.py
-rw-r--r-- root/root 3561 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bitset_tests.py
-rw-r--r-- root/root 1887 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/bitset_utils.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/cookbook/
-rw-r--r-- root/root 2889 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/cookbook/__init__.py
-rw-r--r-- root/root 4055 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/cookbook/attribute.py
-rw-r--r-- root/root 2842 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/cookbook/doc_optparse.py
-rw-r--r-- root/root 2081 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/filter.py
-rw-r--r-- root/root 10457 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/gene_reader.py
-rw-r--r-- root/root 19364 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/interval_index_file.py
-rw-r--r-- root/root 1609 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/interval_index_file_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/
-rw-r--r-- root/root 344 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/__init__.py
-rw-r--r-- root/root 69840 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69840 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 3831 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/cluster_tests.py
-rw-r--r-- root/root 137816 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 137816 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 6296 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/intersection_tests.py
-rw-r--r-- root/root 11034 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/io.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/
-rw-r--r-- root/root 893 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/__init__.py
-rw-r--r-- root/root 897 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/base_coverage.py
-rw-r--r-- root/root 2561 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/complement.py
-rw-r--r-- root/root 2602 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/concat.py
-rw-r--r-- root/root 3067 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/coverage.py
-rw-r--r-- root/root 5183 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/find_clusters.py
-rw-r--r-- root/root 3558 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/intersect.py
-rw-r--r-- root/root 4859 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/join.py
-rw-r--r-- root/root 1462 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/merge.py
-rw-r--r-- root/root 5959 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/quicksect.py
-rw-r--r-- root/root 3346 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/operations/subtract.py
-rw-r--r-- root/root 9503 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intervals/random_intervals.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intseq/
-rw-r--r-- root/root 76 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intseq/__init__.py
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/
-rw-r--r-- root/root 297 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/__init__.py
-rw-r--r-- root/root 69904 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69904 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 69936 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69936 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 202 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/bgzf_tests.py
-rw-r--r-- root/root 5064 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/binary_file.py
-rw-r--r-- root/root 4548 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/cdb.py
-rw-r--r-- root/root 696 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/cdb_tests.py
-rw-r--r-- root/root 3591 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/filecache.py
-rw-r--r-- root/root 544 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/filecache_tests.py
-rw-r--r-- root/root 917 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/readlengths.py
-rw-r--r-- root/root 4761 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/seekbzip2.py
-rw-r--r-- root/root 2352 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/seekbzip2_tests.py
-rw-r--r-- root/root 6063 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/seeklzop.py
-rw-r--r-- root/root 669 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/misc/seeklzop_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/
-rw-r--r-- root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/__init__.py
-rw-r--r-- root/root 69136 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69136 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/io/
-rw-r--r-- root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/io/__init__.py
-rw-r--r-- root/root 8300 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/io/transfac.py
-rw-r--r-- root/root 2570 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/io/transfac_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/logo/
-rw-r--r-- root/root 2761 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/logo/__init__.py
-rw-r--r-- root/root 1169 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/logo/template.ps
-rw-r--r-- root/root 5402 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/pwm.py
-rw-r--r-- root/root 3327 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/motif/pwm_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/phylo/
-rw-r--r-- root/root 42 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/phylo/__init__.py
-rw-r--r-- root/root 3679 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/phylo/newick.py
-rw-r--r-- root/root 8842 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/phylo/newick_tests.py
-rw-r--r-- root/root 1299 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/phylo/phast.py
-rw-r--r-- root/root 2030 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/phylo/phast_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/
-rw-r--r-- root/root 245 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/__init__.py
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 2810 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_pwm.py
-rw-r--r-- root/root 2941 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_string.py
-rw-r--r-- root/root 2126 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/maf_select_motifs.py
-rw-r--r-- root/root 30954 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/position_weight_matrix.py
-rw-r--r-- root/root 7762 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/pwm_score_maf.py
-rw-r--r-- root/root 1763 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/pwm_score_motifs.py
-rw-r--r-- root/root 2011 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/pwm_score_positions.py
-rw-r--r-- root/root 2809 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/pwm/pwm_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/
-rw-r--r-- root/root 362 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/__init__.py
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/_nib.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/_nib.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 69104 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so
-rw-r--r-- root/root 2611 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/core.py
-rw-r--r-- root/root 3612 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/fasta.py
-rw-r--r-- root/root 1015 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/fasta_tests.py
-rw-r--r-- root/root 2901 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/nib.py
-rw-r--r-- root/root 1457 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/nib_tests.py
-rw-r--r-- root/root 10253 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/qdna.py
-rw-r--r-- root/root 1015 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/qdna_tests.py
-rw-r--r-- root/root 4800 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/seq.py
-rw-r--r-- root/root 1959 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/seq_tests.py
-rw-r--r-- root/root 4314 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/twobit.py
-rw-r--r-- root/root 1689 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seq/twobit_tests.py
-rw-r--r-- root/root 2855 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seqmapping.py
-rw-r--r-- root/root 2832 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/seqmapping_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/tabular/
-rw-r--r-- root/root 55 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/tabular/__init__.py
-rw-r--r-- root/root 4501 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/tabular/io.py
-rw-r--r-- root/root 2785 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/wiggle.py
-rw-r--r-- root/root 3336 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx/wiggle_tests.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/
-rw-r--r-- root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/__init__.py
-rw-r--r-- root/root 4875 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/fpconst.py
-rw-r--r-- root/root 63 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/fpconst_tests.py
-rw-r--r-- root/root 7154 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/lrucache.py
-rw-r--r-- root/root 38901 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/pstat.py
-rw-r--r-- root/root 163186 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_extras/stats.py
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/
-rw-r--r-- root/root 7 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/INSTALLER
-rw-r--r-- root/root 3084 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/METADATA
-rw-r--r-- root/root 105 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/WHEEL
-rw-r--r-- root/root 13 2024-10-04 23:08 ./usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/top_level.txt
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/doc/python3-bx/
-rw-r--r-- root/root 613 2024-09-22 12:10 ./usr/share/doc/python3-bx/README.Debian
-rw-r--r-- root/root 221 2024-10-04 23:08 ./usr/share/doc/python3-bx/changelog.Debian.arm64.gz
-rw-r--r-- root/root 1747 2024-10-04 23:08 ./usr/share/doc/python3-bx/changelog.Debian.gz
-rw-r--r-- root/root 12186 2024-09-22 12:10 ./usr/share/doc/python3-bx/copyright
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/lintian/
drwxr-xr-x root/root 0 2024-10-04 23:08 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 376 2024-09-22 12:10 ./usr/share/lintian/overrides/python3-bx
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1456 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1467 B]
Fetched 3538 B in 0s (303 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release [609 B]
Get:2 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release [609 B]
Get:3 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-Q8Idzn/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-lintian-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-lintian-dummy.
(Reading database ... 27005 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 159560
Build-Time: 208
Distribution: sid
Host Architecture: arm64
Install-Time: 43
Job: /tmp/debusine-fetch-exec-upload-yq_6ax1y/python-bx_0.13.0-1.dsc
Lintian: pass
Machine Architecture: arm64
Package: python-bx
Package-Time: 292
Source-Version: 0.13.0-1
Space: 159560
Status: successful
Version: 0.13.0-1+bd1
--------------------------------------------------------------------------------
Finished at 2024-10-04T23:12:21Z
Build needed 00:04:52, 159560k disk space