Class VariantTypeCounters
java.lang.Object
org.snpsift.annotate.mem.variantTypeCounter.VariantTypeCounters
Variant type counters for each chromosome
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Constructor Summary
ConstructorsConstructorDescriptionVariantTypeCounters
(boolean verbose) VariantTypeCounters
(Fields fields, boolean verbose) -
Method Summary
Modifier and TypeMethodDescriptionvoid
Count the number of variants in a VCF filevoid
count
(org.snpeff.fileIterator.VcfFileIterator vcfFile) void
count
(org.snpeff.vcf.VcfEntry vcfEntry) Count the number of variants in a VCF filestatic VariantTypeCounters
Load from filevoid
void
setVerbose
(boolean verbose) toString()
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Constructor Details
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VariantTypeCounters
public VariantTypeCounters(boolean verbose) -
VariantTypeCounters
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Method Details
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load
Load from file -
count
Count the number of variants in a VCF file -
count
public void count(org.snpeff.fileIterator.VcfFileIterator vcfFile) -
count
public void count(org.snpeff.vcf.VcfEntry vcfEntry) Count the number of variants in a VCF file -
get
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getFields
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save
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setVerbose
public void setVerbose(boolean verbose) -
toString
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