Package org.snpeff.motif
package org.snpeff.motif
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ClassesClassDescriptionLoad PWM matrices from a Jaspar fileCreate a DNA logo for a PWM References: - See WebLogo http://weblogo.berkeley.edu/ - "WebLogo: A Sequence Logo Generator"Create a DNA motif count matrix Refrence http://en.wikipedia.org/wiki/Position-specific_scoring_matrixCreate a DNA motif count matrix and also count the number of sequences in that contribute to this motif.