Uses of Package
org.snpeff.snpEffect.commandLine
Packages that use org.snpeff.snpEffect.commandLine
Package
Description
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Classes in org.snpeff.snpEffect.commandLine used by org.snpeffClassDescriptionCommand line and arguments The way to run a command from 'main' is usually: public static void main(String[] args) { Command cmd = new Command(); cmd.parseArgs(args); cmd.run(); }
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Classes in org.snpeff.snpEffect.commandLine used by org.snpeff.fastqClassDescriptionCommand line and arguments The way to run a command from 'main' is usually: public static void main(String[] args) { Command cmd = new Command(); cmd.parseArgs(args); cmd.run(); }
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Classes in org.snpeff.snpEffect.commandLine used by org.snpeff.snpEffectClassDescriptionCommand line and arguments The way to run a command from 'main' is usually: public static void main(String[] args) { Command cmd = new Command(); cmd.parseArgs(args); cmd.run(); }
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Classes in org.snpeff.snpEffect.commandLine used by org.snpeff.snpEffect.commandLineClassDescriptionCommand line and arguments The way to run a command from 'main' is usually: public static void main(String[] args) { Command cmd = new Command(); cmd.parseArgs(args); cmd.run(); }Command line: Calculate coding sequences from a file and compare them to the ones calculated from our data structuresCommand line: Read protein sequences from a file and compare them to the ones calculated from our data structures Note: This is done in order to see potential incompatibility errors between genome sequence and annotation.
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Classes in org.snpeff.snpEffect.commandLine used by org.snpeff.spliceSitesClassDescriptionCommand line and arguments The way to run a command from 'main' is usually: public static void main(String[] args) { Command cmd = new Command(); cmd.parseArgs(args); cmd.run(); }