Package org.snpeff.geneSets.algorithm
Class RankSumPValueGreedyAlgorithm
java.lang.Object
org.snpeff.geneSets.algorithm.EnrichmentAlgorithm
org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedy
org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedyVariableSize
org.snpeff.geneSets.algorithm.RankSumPValueGreedyAlgorithm
-
Nested Class Summary
Nested classes/interfaces inherited from class org.snpeff.geneSets.algorithm.EnrichmentAlgorithm
EnrichmentAlgorithm.EnrichmentAlgorithmType
-
Field Summary
Fields inherited from class org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedy
adjustedPvalue, DEFAULT_MAX_PVALUE, maxPvalue, maxPvalueAjusted
Fields inherited from class org.snpeff.geneSets.algorithm.EnrichmentAlgorithm
HTML_BG_COLOR, HTML_BG_COLOR_TITLE, HTML_TD_GENES_MAX_LEN, PRINT_SOMETHING_TIME
-
Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedyVariableSize
greedyPvalue, setInitialSize, setSizeGrowthFactor
Methods inherited from class org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedy
greedyPvalue, select, setAdjustedPvalue, setMaxGeneSetSize, setMaxPvalue, setMaxPvalueAjusted, setMinGeneSetSize, setVerbose
Methods inherited from class org.snpeff.geneSets.algorithm.EnrichmentAlgorithm
getMaxPvalueAdjusted, getOutput, isShow, print, setDebug, setFilterOutputGeneSets, setHtmlTable, setMaxPValue, setMaxPvalueAdjusted
-
Constructor Details
-
RankSumPValueGreedyAlgorithm
-
-
Method Details
-
stopCriteria
Stop criteria- Overrides:
stopCriteria
in classEnrichmentAlgorithmGreedy
- Parameters:
result
-- Returns:
-