Uses of Class
org.snpeff.reactome.Entity
Packages that use Entity
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Uses of Entity in org.snpeff.reactome
Subclasses of Entity in org.snpeff.reactomeMethods in org.snpeff.reactome that return types with arguments of type EntityMethods in org.snpeff.reactome with parameters of type EntityModifier and TypeMethodDescriptionvoid
void
Add an entity invalid input: '<'-> geneIdint
Method parameters in org.snpeff.reactome with type arguments of type Entity -
Uses of Entity in org.snpeff.reactome.events
Subclasses of Entity in org.snpeff.reactome.eventsModifier and TypeClassDescriptionclass
A black box eventclass
A catalyst activity eventclass
A Reactome complex (a bunch of molecules or complexesclass
A depolymerization eventclass
A reactome event (any generic event, from pathways to polymerizations)class
A Reactome pathwayclass
A polymerization eventclass
A reactionFields in org.snpeff.reactome.events with type parameters of type EntityModifier and TypeFieldDescriptionReaction.catalyst
Reaction.inputs
Reaction.outputs
protected HashMap
<Entity, Reaction.RegulationType> Reaction.regulator
Methods in org.snpeff.reactome.events that return types with arguments of type EntityModifier and TypeMethodDescriptionReaction.getCatalyst()
Reaction.getInputs()
Reaction.getOutputs()
Reaction.getRegulator()
Complex.iterator()
Methods in org.snpeff.reactome.events with parameters of type EntityModifier and TypeMethodDescriptionvoid
void
Reaction.addCatalyst
(Entity e) void
void
void
Reaction.addRegulator
(Entity e, String type) void
Reaction.addRegulator
(Entity e, Reaction.RegulationType type) Method parameters in org.snpeff.reactome.events with type arguments of type Entity