Class SubsequenceComparator<T extends BinarySequence>

java.lang.Object
org.snpeff.binseq.comparator.SubsequenceComparator<T>
Type Parameters:
T -
Direct Known Subclasses:
DnaQualSubsequenceComparator, DnaSubsequenceComparator

public abstract class SubsequenceComparator<T extends BinarySequence> extends Object
Compare two subsequences (actually it compares two sequences from different starting points)
Author:
pcingola
  • Constructor Details

    • SubsequenceComparator

      public SubsequenceComparator()
  • Method Details

    • compare

      public abstract int compare(T seq1, int start1, T seq2, int start2)
    • score

      public abstract int score(T seq1, int start1, T seq2, int start2)