Uses of Class
org.snpeff.interval.codonChange.CodonChange
Packages that use CodonChange
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Uses of CodonChange in org.snpeff.interval.codonChange
Subclasses of CodonChange in org.snpeff.interval.codonChangeModifier and TypeClassDescriptionclass
Calculate codon changes produced by a deletionclass
Calculate codon changes produced by a duplicationclass
Calculate codon changes produced by an insertionclass
Calculate codon changes produced by a Interval Note: An interval does not produce any effect.class
Calculate codon changes produced by an inversionclass
Calculate codon changes produced by a 'mixed' variant Essentially every 'mixed' variant can be represented as a concatenation of a SNP/MNP + an INS/DELclass
Calculate codon changes produced by a MNPclass
Calculate codon changes produced by a SNPclass
Calculate codon changes produced by a duplicationMethods in org.snpeff.interval.codonChange that return CodonChangeModifier and TypeMethodDescriptionstatic CodonChange
CodonChange.factory
(Variant variant, Transcript transcript, VariantEffects variantEffects) Create a specific codon change for a variant