Class MotifLogo

java.lang.Object
org.snpeff.motif.MotifLogo

public class MotifLogo extends Object
Create a DNA logo for a PWM References: - See WebLogo http://weblogo.berkeley.edu/ - "WebLogo: A Sequence Logo Generator"
Author:
pcingola
  • Constructor Details

    • MotifLogo

      public MotifLogo(Pwm pwm)
  • Method Details

    • log2

      public static double log2(double p)
      Log base 2
    • toStringHtml

      public String toStringHtml(int width, int maxHeight, EffectType efectType)
      Return an HTML string that represents the motif.