Uses of Enum Class
org.jmol.c.STR
Packages that use STR
Package
Description
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Uses of STR in org.jmol.adapter.smarter
Fields in org.jmol.adapter.smarter declared as STRMethods in org.jmol.adapter.smarter that return STRModifier and TypeMethodDescriptionstatic STR
Structure.getHelixType
(int type) StructureIterator.getStructureType()
StructureIterator.getSubstructureType()
Constructors in org.jmol.adapter.smarter with parameters of type STR -
Uses of STR in org.jmol.api
Methods in org.jmol.api that return STRModifier and TypeMethodDescriptionabstract STR
JmolAdapterStructureIterator.getStructureType()
abstract STR
JmolAdapterStructureIterator.getSubstructureType()
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Uses of STR in org.jmol.c
Methods in org.jmol.c that return STRModifier and TypeMethodDescriptionstatic final STR
STR.getProteinStructureType
(String name) In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure.static STR
Returns the enum constant of this class with the specified name.static STR[]
STR.values()
Returns an array containing the constants of this enum class, in the order they are declared. -
Uses of STR in org.jmol.modelset
Methods in org.jmol.modelset that return STRModifier and TypeMethodDescriptionGroup.getProteinStructureSubType()
Group.getProteinStructureType()
Methods in org.jmol.modelset that return types with arguments of type STRMethods in org.jmol.modelset with parameters of type STRModifier and TypeMethodDescriptionboolean
Group.isWithinStructure
(STR type) int
Group.setProteinStructureType
(STR type, int monomerIndexCurrent) void
ModelSet.setProteinType
(BS bs, STR type) Method parameters in org.jmol.modelset with type arguments of type STR -
Uses of STR in org.jmol.modelsetbio
Methods in org.jmol.modelsetbio that return STRModifier and TypeMethodDescriptionAlphaMonomer.getProteinStructureSubType()
AlphaMonomer.getProteinStructureType()
CarbohydrateMonomer.getProteinStructureType()
Monomer.getProteinStructureType()
NucleicMonomer.getProteinStructureType()
PhosphorusMonomer.getProteinStructureType()
Methods in org.jmol.modelsetbio with parameters of type STRModifier and TypeMethodDescriptionvoid
AlphaPolymer.addStructure
(STR type, String structureID, String serialID, int strandCount, int startChainID, int startSeqcode, int endChainID, int endSeqcode, int istart, int iend, BS bsAssigned) boolean
AlphaPolymer.addStructureProtected
(STR type, String structureID, String serialID, int strandCount, int indexStart, int indexEnd) boolean
AlphaMonomer.isWithinStructure
(STR type) void
BioModelSet.setAllProteinType
(BS bs, STR type) called from state STRUCTURE commandint
AlphaMonomer.setProteinStructureType
(STR type, int monomerIndexCurrent) int
AlphaPolymer.setStructureBS
(int count, int dsspType, STR type, BS bs, boolean doOffset) bits in the bitset determines the typeprotected void
ProteinStructure.setupPS
(AlphaPolymer apolymer, STR type, int monomerIndex, int monomerCount) Method parameters in org.jmol.modelsetbio with type arguments of type STRModifier and TypeMethodDescriptionvoid
BioModelSet.setAllStructureList
(Map<STR, float[]> structureList) void
AminoPolymer.setStructureList
(Map<STR, float[]> structureList) -
Uses of STR in org.jmol.renderbio
Fields in org.jmol.renderbio declared as STRModifier and TypeFieldDescriptionprotected STR[]
BioShapeRenderer.structureTypes
protected STR[]
BioShapeRenderer.structureTypes
protected STR[]
BioShapeRenderer.structureTypes
protected STR[]
BioShapeRenderer.structureTypes
protected STR[]
BioShapeRenderer.structureTypes
protected STR[]
BioShapeRenderer.structureTypes
protected STR[]
BioShapeRenderer.structureTypes
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Uses of STR in org.jmol.util
Methods in org.jmol.util that return STRMethods in org.jmol.util with parameters of type STR -
Uses of STR in org.jmol.viewer
Methods in org.jmol.viewer that return STRMethods in org.jmol.viewer that return types with arguments of type STRMethods in org.jmol.viewer with parameters of type STRModifier and TypeMethodDescriptionvoid
Viewer.freeTempEnum
(STR[] temp) void
Viewer.setProteinType
(STR type, BS bs) void
GlobalSettings.setStructureList
(float[] list, STR type) void
Viewer.setStructureList
(float[] list, STR type)