Class JvxlData

java.lang.Object
org.jmol.jvxl.data.JvxlData

public class JvxlData extends Object
  • Field Details

    • msg

      public String msg
    • wasJvxl

      public boolean wasJvxl
    • wasCubic

      public boolean wasCubic
    • jvxlFileSource

      public String jvxlFileSource
    • jvxlFileTitle

      public String jvxlFileTitle
    • jvxlFileMessage

      public String jvxlFileMessage
    • jvxlSurfaceData

      public String jvxlSurfaceData
    • jvxlEdgeData

      public String jvxlEdgeData
    • jvxlColorData

      public String jvxlColorData
    • jvxlVolumeDataXml

      public String jvxlVolumeDataXml
    • jvxlExcluded

      public BS[] jvxlExcluded
    • jvxlPlane

      public P4 jvxlPlane
    • isJvxlPrecisionColor

      public boolean isJvxlPrecisionColor
    • jvxlDataIsColorMapped

      public boolean jvxlDataIsColorMapped
    • jvxlDataIs2dContour

      public boolean jvxlDataIs2dContour
    • jvxlDataIsColorDensity

      public boolean jvxlDataIsColorDensity
    • isColorReversed

      public boolean isColorReversed
    • thisSet

      public BS thisSet
    • edgeFractionBase

      public int edgeFractionBase
    • edgeFractionRange

      public int edgeFractionRange
    • colorFractionBase

      public int colorFractionBase
    • colorFractionRange

      public int colorFractionRange
    • isValid

      public boolean isValid
    • insideOut

      public boolean insideOut
    • isXLowToHigh

      public boolean isXLowToHigh
    • isContoured

      public boolean isContoured
    • isBicolorMap

      public boolean isBicolorMap
    • isTruncated

      public boolean isTruncated
    • isCutoffAbsolute

      public boolean isCutoffAbsolute
    • isModelConnected

      public boolean isModelConnected
    • vertexDataOnly

      public boolean vertexDataOnly
    • mappedDataMin

      public float mappedDataMin
    • mappedDataMax

      public float mappedDataMax
    • valueMappedToRed

      public float valueMappedToRed
    • valueMappedToBlue

      public float valueMappedToBlue
    • cutoff

      public float cutoff
    • cutoffRange

      public float[] cutoffRange
    • pointsPerAngstrom

      public float pointsPerAngstrom
    • nPointsX

      public int nPointsX
    • nPointsY

      public int nPointsY
    • nPointsZ

      public int nPointsZ
    • nBytes

      public long nBytes
    • nContours

      public int nContours
    • nEdges

      public int nEdges
    • nSurfaceInts

      public int nSurfaceInts
    • vertexCount

      public int vertexCount
    • vContours

      public Lst<Object>[] vContours
    • contourColixes

      public short[] contourColixes
    • contourColors

      public String contourColors
    • contourValues

      public float[] contourValues
    • contourValuesUsed

      public float[] contourValuesUsed
    • thisContour

      public int thisContour
    • scale3d

      public float scale3d
    • minColorIndex

      public short minColorIndex
    • maxColorIndex

      public short maxColorIndex
    • title

      public String[] title
    • version

      public String version
    • boundingBox

      public P3[] boundingBox
    • excludedTriangleCount

      public int excludedTriangleCount
    • excludedVertexCount

      public int excludedVertexCount
    • colorDensity

      public boolean colorDensity
    • pointSize

      public float pointSize
    • moleculeXml

      public String moleculeXml
    • dataMin

      public float dataMin
    • dataMax

      public float dataMax
    • saveVertexCount

      public int saveVertexCount
    • vertexColorMap

      public Map<String,BS> vertexColorMap
    • nVertexColors

      public int nVertexColors
    • vertexColors

      public int[] vertexColors
    • color

      public String color
    • meshColor

      public String meshColor
    • translucency

      public float translucency
    • colorScheme

      public String colorScheme
    • rendering

      public String rendering
    • slabValue

      public int slabValue
    • isSlabbable

      public boolean isSlabbable
    • diameter

      public int diameter
    • slabInfo

      public String slabInfo
    • allowVolumeRender

      public boolean allowVolumeRender
    • voxelVolume

      public float voxelVolume
    • mapLattice

      public P3 mapLattice
    • fixedLattice

      public P3 fixedLattice
    • baseColor

      public String baseColor
    • integration

      public float integration
    • sbOut

      public SB sbOut
  • Constructor Details

    • JvxlData

      public JvxlData()
  • Method Details

    • clear

      public void clear()
    • setSurfaceInfo

      public void setSurfaceInfo(P4 thePlane, P3 mapLattice, int nSurfaceInts, String surfaceData)
    • setSurfaceInfoFromBitSet

      public void setSurfaceInfoFromBitSet(BS bs, P4 thePlane)
    • setSurfaceInfoFromBitSetPts

      public void setSurfaceInfoFromBitSetPts(BS bs, P4 thePlane, P3 mapLattice)
    • jvxlUpdateInfo

      public void jvxlUpdateInfo(String[] title, long nBytes)
    • updateSurfaceData

      public static String updateSurfaceData(String edgeData, float[] vertexValues, int vertexCount, int vertexIncrement, char isNaN)