Uses of Class
org.jmol.smiles.SmilesAtom
Packages that use SmilesAtom
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Uses of SmilesAtom in org.jmol.smiles
Methods in org.jmol.smiles that return SmilesAtomModifier and TypeMethodDescriptionSmilesBond.getAtom1()
SmilesBond.getOtherAtom
(SmilesAtom a) SmilesAtom.setIndex
(int index) Constructs aSmilesAtom
.SmilesAtom.setTopoAtom
(int iComponent, int ptAtom, String symbol, int charge, int patternIndex) Methods in org.jmol.smiles with parameters of type SmilesAtomModifier and TypeMethodDescriptionint
SmilesStereo.checkStereoForAtom
(SmilesAtom pAtom, boolean isNot, boolean haveTopo) Node[]
SmilesStereo.getAlleneAtoms
(boolean haveTopo, SmilesAtom sAtom0, SmilesAtom pAtom, SmilesAtom pAtom1) int
SmilesStereo.getChiralClass
(SmilesAtom sAtom) SmilesBond.getOtherAtom
(SmilesAtom a) boolean
SmilesStereo.setTopoCoordinates
(SmilesAtom sAtom0, SmilesAtom pAtom, SmilesAtom sAtom2, Node[] cAtoms, boolean isNot) Constructors in org.jmol.smiles with parameters of type SmilesAtomModifierConstructorDescriptionSmilesBond
(SmilesAtom atom1, SmilesAtom atom2, int bondType, boolean isNot) SmilesBond constructor