Package org.jmol.dssx
Class DSSP
java.lang.Object
org.jmol.dssx.DSSP
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptioncalculateDssp
(Object[] objBioPolymers, int bioPolymerCount, Object objVHBonds, boolean doReport, boolean dsspIgnoreHydrogens, boolean setStructure, int version)
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Constructor Details
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DSSP
public DSSP()
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Method Details
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calculateDssp
public String calculateDssp(Object[] objBioPolymers, int bioPolymerCount, Object objVHBonds, boolean doReport, boolean dsspIgnoreHydrogens, boolean setStructure, int version) - Parameters:
objBioPolymers
-bioPolymerCount
-objVHBonds
-doReport
-dsspIgnoreHydrogens
-setStructure
-version
- can be 2.0 to reverse order of helix calculation and emphasize pi-helices- Returns:
- helix-5, helix-4, helix-3, and SUMMARY lines
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