Python Module Index

b
 
b
bmtk
    bmtk.analyzer
    bmtk.analyzer.cell_vars
    bmtk.analyzer.compartment
    bmtk.analyzer.ecp
    bmtk.analyzer.edges
    bmtk.analyzer.firing_rates
    bmtk.analyzer.io_tools
    bmtk.analyzer.spike_trains
    bmtk.analyzer.spikes_analyzer
    bmtk.analyzer.spikes_loader
    bmtk.analyzer.utils
    bmtk.builder
    bmtk.builder.auxi
    bmtk.builder.auxi.edge_connectors
    bmtk.builder.auxi.node_params
    bmtk.builder.bionet
    bmtk.builder.bionet.swc_reader
    bmtk.builder.builder_utils
    bmtk.builder.connection_map
    bmtk.builder.connector
    bmtk.builder.edge
    bmtk.builder.edges_sorter
    bmtk.builder.edges_sorter.memory_sorter
    bmtk.builder.edges_sorter.merge_sorter
    bmtk.builder.functor_cache
    bmtk.builder.id_generator
    bmtk.builder.index_builders
    bmtk.builder.iterator
    bmtk.builder.network_adaptors
    bmtk.builder.network_adaptors.dm_network
    bmtk.builder.network_adaptors.dm_network_orig
    bmtk.builder.network_adaptors.edge_props_table
    bmtk.builder.network_adaptors.edges_collator
    bmtk.builder.network_adaptors.network
    bmtk.builder.network_adaptors.nxnetwork
    bmtk.builder.network_builder
    bmtk.builder.networks
    bmtk.builder.node
    bmtk.builder.node_pool
    bmtk.builder.node_set
    bmtk.simulator
    bmtk.simulator.bionet
    bmtk.simulator.bionet.biocell
    bmtk.simulator.bionet.bionetwork
    bmtk.simulator.bionet.biosimulator
    bmtk.simulator.bionet.cell
    bmtk.simulator.bionet.config
    bmtk.simulator.bionet.default_setters
    bmtk.simulator.bionet.default_setters.cell_models
    bmtk.simulator.bionet.default_setters.synapse_models
    bmtk.simulator.bionet.default_setters.synaptic_weights
    bmtk.simulator.bionet.gids
    bmtk.simulator.bionet.iclamp
    bmtk.simulator.bionet.io_tools
    bmtk.simulator.bionet.modules
    bmtk.simulator.bionet.modules.comsol
    bmtk.simulator.bionet.modules.ecephys_module
    bmtk.simulator.bionet.modules.ecp
    bmtk.simulator.bionet.modules.iclamp
    bmtk.simulator.bionet.modules.record_cellvars
    bmtk.simulator.bionet.modules.record_clamp
    bmtk.simulator.bionet.modules.record_netcons
    bmtk.simulator.bionet.modules.record_spikes
    bmtk.simulator.bionet.modules.save_synapses
    bmtk.simulator.bionet.modules.seclamp
    bmtk.simulator.bionet.modules.sim_module
    bmtk.simulator.bionet.modules.xstim
    bmtk.simulator.bionet.modules.xstim_waveforms
    bmtk.simulator.bionet.morphology
    bmtk.simulator.bionet.nml_reader
    bmtk.simulator.bionet.nrn
    bmtk.simulator.bionet.pointprocesscell
    bmtk.simulator.bionet.pointsomacell
    bmtk.simulator.bionet.pyfunction_cache
    bmtk.simulator.bionet.seclamp
    bmtk.simulator.bionet.sonata_adaptors
    bmtk.simulator.bionet.utils
    bmtk.simulator.bionet.virtualcell
    bmtk.simulator.core
    bmtk.simulator.core.edge_population
    bmtk.simulator.core.graph
    bmtk.simulator.core.io_tools
    bmtk.simulator.core.modules
    bmtk.simulator.core.modules.ecephys_module
    bmtk.simulator.core.modules.iclamp
    bmtk.simulator.core.modules.simulator_module
    bmtk.simulator.core.network_reader
    bmtk.simulator.core.node_population
    bmtk.simulator.core.node_sets
    bmtk.simulator.core.pyfunction_cache
    bmtk.simulator.core.simulation_config
    bmtk.simulator.core.simulation_config_validator
    bmtk.simulator.core.simulator
    bmtk.simulator.core.simulator_network
    bmtk.simulator.core.sonata_reader
    bmtk.simulator.core.sonata_reader.edge_adaptor
    bmtk.simulator.core.sonata_reader.network_reader
    bmtk.simulator.core.sonata_reader.node_adaptor
    bmtk.simulator.filternet
    bmtk.simulator.filternet.auditory_processing
    bmtk.simulator.filternet.cell
    bmtk.simulator.filternet.cell_models
    bmtk.simulator.filternet.config
    bmtk.simulator.filternet.default_setters
    bmtk.simulator.filternet.default_setters.cell_loaders
    bmtk.simulator.filternet.filternetwork
    bmtk.simulator.filternet.filters
    bmtk.simulator.filternet.filtersimulator
    bmtk.simulator.filternet.io_tools
    bmtk.simulator.filternet.lgnmodel
    bmtk.simulator.filternet.lgnmodel.cellmetrics
    bmtk.simulator.filternet.lgnmodel.cellmodel
    bmtk.simulator.filternet.lgnmodel.cursor
    bmtk.simulator.filternet.lgnmodel.fitfuns
    bmtk.simulator.filternet.lgnmodel.gaborfilter
    bmtk.simulator.filternet.lgnmodel.kernel
    bmtk.simulator.filternet.lgnmodel.lattice_unit_constructor
    bmtk.simulator.filternet.lgnmodel.lgnmodel1
    bmtk.simulator.filternet.lgnmodel.linearfilter
    bmtk.simulator.filternet.lgnmodel.lnunit
    bmtk.simulator.filternet.lgnmodel.make_cell_list
    bmtk.simulator.filternet.lgnmodel.movie
    bmtk.simulator.filternet.lgnmodel.poissongeneration
    bmtk.simulator.filternet.lgnmodel.singleunitcell
    bmtk.simulator.filternet.lgnmodel.spatialfilter
    bmtk.simulator.filternet.lgnmodel.temporalfilter
    bmtk.simulator.filternet.lgnmodel.transferfunction
    bmtk.simulator.filternet.lgnmodel.util_fns
    bmtk.simulator.filternet.lgnmodel.utilities
    bmtk.simulator.filternet.lgnmodel.waveletfilter
    bmtk.simulator.filternet.modules
    bmtk.simulator.filternet.modules.base
    bmtk.simulator.filternet.modules.create_spikes
    bmtk.simulator.filternet.modules.record_rates
    bmtk.simulator.filternet.pyfunction_cache
    bmtk.simulator.filternet.sonata_adaptors
    bmtk.simulator.filternet.transfer_functions
    bmtk.simulator.filternet.utils
    bmtk.simulator.pointnet
    bmtk.simulator.pointnet.config
    bmtk.simulator.pointnet.default_setters
    bmtk.simulator.pointnet.default_setters.cell_models
    bmtk.simulator.pointnet.default_setters.synapse_models
    bmtk.simulator.pointnet.default_setters.synaptic_weights
    bmtk.simulator.pointnet.gids
    bmtk.simulator.pointnet.glif_utils
    bmtk.simulator.pointnet.io_tools
    bmtk.simulator.pointnet.modules
    bmtk.simulator.pointnet.modules.ecephys_module
    bmtk.simulator.pointnet.modules.iclamp
    bmtk.simulator.pointnet.modules.multimeter_reporter
    bmtk.simulator.pointnet.modules.record_spikes
    bmtk.simulator.pointnet.modules.sim_module
    bmtk.simulator.pointnet.modules.spikes_inputs
    bmtk.simulator.pointnet.modules.weight_recorder
    bmtk.simulator.pointnet.nest_utils
    bmtk.simulator.pointnet.pointnetwork
    bmtk.simulator.pointnet.pointsimulator
    bmtk.simulator.pointnet.property_map
    bmtk.simulator.pointnet.pyfunction_cache
    bmtk.simulator.pointnet.sonata_adaptors
    bmtk.simulator.pointnet.utils
    bmtk.simulator.popnet.sonata_adaptors
    bmtk.simulator.popnet.utils
    bmtk.simulator.utils
    bmtk.simulator.utils.simulation_inputs
    bmtk.simulator.utils.simulation_reports
    bmtk.tests
    bmtk.tests.builder
    bmtk.tests.builder.auxi
    bmtk.tests.builder.auxi.test_edge_connectors
    bmtk.tests.builder.auxi.test_node_params
    bmtk.tests.builder.bionet
    bmtk.tests.builder.bionet.test_swc_reader
    bmtk.tests.builder.test_connection_map
    bmtk.tests.builder.test_connector
    bmtk.tests.builder.test_densenetwork
    bmtk.tests.builder.test_edge_iterator
    bmtk.tests.builder.test_edges_sorter
    bmtk.tests.builder.test_id_generator
    bmtk.tests.builder.test_index_builders
    bmtk.tests.builder.test_iterator
    bmtk.tests.builder.test_network
    bmtk.tests.builder.test_network_mpi
    bmtk.tests.builder.test_node_pool
    bmtk.tests.builder.test_node_set
    bmtk.tests.builder.test_save_network
    bmtk.tests.simulator
    bmtk.tests.simulator.bionet
    bmtk.tests.simulator.bionet.bionet_virtual_files
    bmtk.tests.simulator.bionet.conftest
    bmtk.tests.simulator.bionet.set_cell_params
    bmtk.tests.simulator.bionet.set_syn_params
    bmtk.tests.simulator.bionet.set_weights
    bmtk.tests.simulator.bionet.test_biograph
    bmtk.tests.simulator.bionet.test_gids
    bmtk.tests.simulator.bionet.test_iclamp
    bmtk.tests.simulator.bionet.test_morphology
    bmtk.tests.simulator.bionet.test_nrn
    bmtk.tests.simulator.bionet.test_virtualcell
    bmtk.tests.simulator.pointnet
    bmtk.tests.simulator.pointnet.conftest
    bmtk.tests.simulator.pointnet.pointnet_virtual_files
    bmtk.tests.simulator.pointnet.test_glif_utils
    bmtk.tests.simulator.pointnet.test_multimeter_report
    bmtk.tests.simulator.pointnet.test_pointgraph
    bmtk.tests.simulator.pointnet.test_pointnetwork
    bmtk.tests.simulator.popnet
    bmtk.tests.simulator.popnet.popnet_virtual_files
    bmtk.tests.simulator.popnet.test_popgraph
    bmtk.tests.utils
    bmtk.tests.utils.reports
    bmtk.tests.utils.reports.compartment
    bmtk.tests.utils.reports.compartment.test_compartment_reader
    bmtk.tests.utils.reports.compartment.test_compartment_report
    bmtk.tests.utils.reports.compartment.test_compartment_writer
    bmtk.tests.utils.reports.compartment.test_plotting
    bmtk.tests.utils.reports.spike_trains
    bmtk.tests.utils.reports.spike_trains.test_csv_adaptor
    bmtk.tests.utils.reports.spike_trains.test_csv_adaptor_mpi
    bmtk.tests.utils.reports.spike_trains.test_plotting
    bmtk.tests.utils.reports.spike_trains.test_sonata_adaptor
    bmtk.tests.utils.reports.spike_trains.test_sonata_adaptor_mpi
    bmtk.tests.utils.reports.spike_trains.test_spikes_buffer
    bmtk.tests.utils.reports.spike_trains.test_spikes_buffer_mpi
    bmtk.tests.utils.reports.spike_trains.test_spikes_core
    bmtk.tests.utils.sonata
    bmtk.tests.utils.sonata.test_config
    bmtk.tests.utils.sonata.test_config_validator
    bmtk.tests.utils.sonata.test_edge_stats
    bmtk.utils
    bmtk.utils.cell_types_db
    bmtk.utils.compile_mechanisms
    bmtk.utils.compile_mechanisms.compile_mechanisms
    bmtk.utils.create_environment
    bmtk.utils.create_environment.create_environment
    bmtk.utils.create_environment.env_builder
    bmtk.utils.hdf5_helper
    bmtk.utils.io
    bmtk.utils.io.cell_vars
    bmtk.utils.io.firing_rates
    bmtk.utils.io.ioutils
    bmtk.utils.io.spike_trains
    bmtk.utils.lazy_property
    bmtk.utils.reports
    bmtk.utils.reports.compartment
    bmtk.utils.reports.compartment.compartment_reader
    bmtk.utils.reports.compartment.compartment_report
    bmtk.utils.reports.compartment.compartment_writer
    bmtk.utils.reports.compartment.core
    bmtk.utils.reports.compartment.plotting
    bmtk.utils.reports.current_writer
    bmtk.utils.reports.spike_trains
    bmtk.utils.reports.spike_trains.core
    bmtk.utils.reports.spike_trains.plotting
    bmtk.utils.reports.spike_trains.spike_train_buffer
    bmtk.utils.reports.spike_trains.spike_train_readers
    bmtk.utils.reports.spike_trains.spike_trains
    bmtk.utils.reports.spike_trains.spike_trains_api
    bmtk.utils.reports.spike_trains.spikes_file_writers
    bmtk.utils.reports.spike_trains.stats
    bmtk.utils.sim_setup
    bmtk.utils.sonata
    bmtk.utils.sonata.column_property
    bmtk.utils.sonata.config
    bmtk.utils.sonata.config.sonata_config
    bmtk.utils.sonata.edge
    bmtk.utils.sonata.edge_stats
    bmtk.utils.sonata.file
    bmtk.utils.sonata.file_root
    bmtk.utils.sonata.group
    bmtk.utils.sonata.node
    bmtk.utils.sonata.population
    bmtk.utils.sonata.types_table
    bmtk.utils.sonata.utils