deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Built-Using: golang-1.23 (= 1.23.2-1), golang-github-alexflint-go-arg (= 1.3.0+ds-3),
golang-github-alexflint-go-scalar (= 1.0.0+ds-2), golang-github-biogo-hts (= 1.4.5+dfsg1-1),
golang-github-cespare-xxhash (= 2.3.0-1), golang-github-dsnet-compress (= 0.0.2~git20230904.39efe44+dfsg1-2),
golang-github-klauspost-compress (= 1.17.10+ds1-1), golang-github-klauspost-pgzip
(= 1.2.6-1), golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-ulikunitz-xz
(= 0.5.6-2)
Depends: libc6 (>= 2.34)
Description: |-
programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Homepage: https://github.com/gogetdata/ggd-utils
Installed-Size: '5884'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: ggd-utils
Priority: optional
Section: science
Source: ggd-utils (1.0.0+ds-1)
Version: 1.0.0+ds-1+b12
srcpkg_name: ggd-utils
srcpkg_version: 1.0.0+ds-1