sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-05.freexian.com
+==============================================================================+
| python-pairix 0.3.8-1 (arm64) Thu, 24 Oct 2024 05:43:06 +0000 |
+==============================================================================+
Package: python-pairix
Version: 0.3.8-1
Source Version: 0.3.8-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/872923/system.tar.xz to /tmp/tmp.sbuild.vcuOvMhrmW...
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Copying /tmp/debusine-fetch-exec-upload-7pnnm2k8/idle_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
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Get:1 file:/build/python-pairix-4Qnl5C/resolver-BnenfG/apt_archive ./ InRelease
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:1 http://deb.debian.org/debian sid/main arm64 coreutils arm64 9.5-1 [2858 kB]
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Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3.1 [9256 B]
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Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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Local sources
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/tmp/debusine-fetch-exec-upload-7pnnm2k8/python-pairix_0.3.8-1.dsc exists in /tmp/debusine-fetch-exec-upload-7pnnm2k8; copying to chroot
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Setup apt archive
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Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
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Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev
libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf python3 python3-all python3-all-dev python3-autocommand
python3-dev python3-inflect python3-iniconfig python3-jaraco.context
python3-jaraco.functools python3-minimal python3-more-itertools
python3-packaging python3-pkg-resources python3-pluggy python3-pytest
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make flit python3-build python3-installer python3-wheel
gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu libc-devtools glibc-doc libstdc++-14-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc
python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc
binfmt-support python3.13-venv python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev
libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf python3 python3-all python3-all-dev python3-autocommand
python3-dev python3-inflect python3-iniconfig python3-jaraco.context
python3-jaraco.functools python3-minimal python3-more-itertools
python3-packaging python3-pkg-resources python3-pluggy python3-pytest
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded.
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Get:47 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:48 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:51 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:53 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:55 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:56 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:57 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:62 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:94 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 gcc-14-aarch64-linux-gnu_14.2.0-7 gcc-14-base_14.2.0-7 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-pairix
Binary: python3-pairix, python-pairix-examples
Architecture: any all
Version: 0.3.8-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/4dn-dcic/pairix
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-pairix
Vcs-Git: https://salsa.debian.org/med-team/python-pairix.git
Testsuite: autopkgtest-pkg-pybuild
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest <!nocheck>
Package-List:
python-pairix-examples deb science optional arch=all
python3-pairix deb python optional arch=any
Checksums-Sha1:
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b8915266a4dbab425d40a07424aa643cb5da85bc 6000 python-pairix_0.3.8-1.debian.tar.xz
Checksums-Sha256:
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Files:
7497099a7c2659ab067828c4f3e52c4b 175468779 python-pairix_0.3.8.orig.tar.gz
6ddc0663044cbf801acc7bfabc624821 6000 python-pairix_0.3.8-1.debian.tar.xz
Dgit: 347c22a531db9be7c169a261d36ee48ac35454b0 debian archive/debian/0.3.8-1 https://git.dgit.debian.org/python-pairix
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gpgv: Signature made Thu Aug 22 21:12:27 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pairix_0.3.8-1.dsc: no acceptable signature found
dpkg-source: info: extracting python-pairix in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pairix_0.3.8.orig.tar.gz
dpkg-source: info: unpacking python-pairix_0.3.8-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python3.10
dpkg-source: info: applying gcc-14.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package python-pairix
dpkg-buildpackage: info: source version 0.3.8-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running config
I: pybuild base:311: python3.12 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_ext
building 'pypairix' extension
creating build
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.13 -c src/bgzf.c -o build/temp.linux-aarch64-cpython-313/src/bgzf.o
src/bgzf.c: In function ‘bgzf_block_length’:
src/bgzf.c:331:34: warning: unused variable ‘remaining’ [-Wunused-variable]
331 | int count, block_length, remaining;
| ^~~~~~~~~
src/bgzf.c:330:47: warning: unused variable ‘compressed_block’ [-Wunused-variable]
330 | uint8_t header[BLOCK_HEADER_LENGTH], *compressed_block;
| ^~~~~~~~~~~~~~~~
src/bgzf.c: In function ‘bgzf_flush’:
src/bgzf.c:419:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
419 | if (fwrite(fp->compressed_block, 1, block_length, fp->fp) != block_length) {
| ^~
src/bgzf.c: In function ‘bgzf_close’:
src/bgzf.c:456:18: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
456 | int ret, count, block_length;
| ^~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.13 -c src/bgzip.c -o build/temp.linux-aarch64-cpython-313/src/bgzip.o
src/bgzip.c: In function ‘main’:
src/bgzip.c:198:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | write(f_dst, buffer, c);
| ^~~~~~~~~~~~~~~~~~~~~~~
src/bgzip.c: In function ‘write_open’:
src/bgzip.c:57:25: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
57 | scanf("%c", &c);
| ^~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.13 -c src/index.c -o build/temp.linux-aarch64-cpython-313/src/index.o
src/index.c: In function ‘merge_chunks’:
src/index.c:354:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
354 | for (l = 1; l < p->n; ++l) {
| ^
src/index.c: In function ‘ti_index_core’:
src/index.c:399:28: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
399 | if (lineno <= idx->conf.line_skip || str->s[0] == idx->conf.meta_char) {
| ^~
src/index.c:423:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
423 | if (intv.bin != last_bin) { // then possibly write the binning index
| ^~
src/index.c:431:35: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
431 | if (bgzf_tell(fp) <= last_off) {
| ^~
src/index.c: In function ‘ti_index_save’:
src/index.c:510:31: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘khint_t’ {aka ‘unsigned int’} [-Wsign-compare]
510 | for (i = 0; i < kh_size(idx->tname); ++i)
| ^
src/index.c:514:31: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘khint_t’ {aka ‘unsigned int’} [-Wsign-compare]
514 | for (i = 0; i < kh_size(idx->tname); ++i)
| ^
src/index.c:534:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
534 | for (x = 0; (int)x < p->n; ++x) {
| ^
src/index.c:539:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
539 | for (x = 0; (int)x < p->n; ++x) {
| ^
src/index.c: In function ‘ti_index_load_core’:
src/index.c:659:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
659 | for (x = 0; x < p->n; ++x) {
| ^
src/index.c: In function ‘ti_parse_region2d’:
src/index.c:864:69: warning: passing argument 1 of ‘ti_get_region_split_character’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
864 | char region_split_character = ti_get_region_split_character(idx);
| ^~~
In file included from src/index.c:11:
src/pairix.h:218:56: note: expected ‘ti_index_t *’ {aka ‘struct __ti_index_t *’} but argument is of type ‘const ti_index_t *’ {aka ‘const struct __ti_index_t *’}
218 | char ti_get_region_split_character(ti_index_t *idx);
| ~~~~~~~~~~~~^~~
src/index.c:878:30: warning: passing argument 1 of ‘ti_get_sc2’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
878 | int dim = ti_get_sc2(idx)+1==0?1:2;
| ^~~
src/pairix.h:209:36: note: expected ‘ti_index_t *’ {aka ‘struct __ti_index_t *’} but argument is of type ‘const ti_index_t *’ {aka ‘const struct __ti_index_t *’}
209 | int ti_get_sc2(ti_index_t *idx);
| ~~~~~~~~~~~~^~~
src/index.c: In function ‘reg2bins’:
src/index.c:974:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
974 | for (k = 1 + (beg>>TAD_LIDX_SHIFT_PL12); k <= 1 + (end>>TAD_LIDX_SHIFT_PL12); ++k) list[i++] = k;
| ^~
src/index.c:975:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
975 | for (k = 9 + (beg>>TAD_LIDX_SHIFT_PL9); k <= 9 + (end>>TAD_LIDX_SHIFT_PL9); ++k) list[i++] = k;
| ^~
src/index.c:976:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
976 | for (k = 73 + (beg>>TAD_LIDX_SHIFT_PL6); k <= 73 + (end>>TAD_LIDX_SHIFT_PL6); ++k) list[i++] = k;
| ^~
src/index.c:977:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
977 | for (k = 585 + (beg>>TAD_LIDX_SHIFT_PL3); k <= 585 + (end>>TAD_LIDX_SHIFT_PL3); ++k) list[i++] = k;
| ^~
src/index.c:978:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
978 | for (k = 4681 + (beg>>TAD_LIDX_SHIFT); k <= 4681 + (end>>TAD_LIDX_SHIFT); ++k) list[i++] = k;
| ^~
src/index.c: In function ‘ti_iter_query’:
src/index.c:1038:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
1038 | for (j = 0; j < p->n; ++j)
| ^
src/index.c: In function ‘ti_querys_2d_general’:
src/index.c:1242:30: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1242 | *sp=0; char *chr1 = reg;
| ^~~
src/index.c: In function ‘ti_query_2d_tid’:
src/index.c:1417:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
1417 | if (name == 0) return (int)ti_iter_first();
| ^
src/index.c: In function ‘create_merged_iter’:
src/index.c:1469:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
1469 | if( miter->iu = calloc(n,sizeof(iter_unit*))) {
| ^~~~~
src/index.c: In function ‘merged_ti_read’:
src/index.c:1537:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1537 | miu[i]->s = ti_iter_read(miu[i]->t->fp, miu[i]->iter, miu[i]->len, seqonly);
| ^
src/index.c:1543:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1543 | miu[0]->s = ti_iter_read(miu[0]->t->fp, miu[0]->iter, miu[0]->len, seqonly); // get next entry for the flushed iter
| ^
src/index.c: In function ‘sequential_ti_read’:
src/index.c:1573:15: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1573 | char *s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0);
| ^~~~~~~~~~~~
src/index.c:1576:9: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1576 | s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0);
| ^
src/index.c: In function ‘flip_region’:
src/index.c:1744:19: warning: variable ‘split_pos’ set but not used [-Wunused-but-set-variable]
1744 | int l, i, l2, split_pos;
| ^~~~~~~~~
src/index.c: In function ‘querys_2D_wrapper’:
src/index.c:1911:34: warning: passing argument 1 of ‘flip_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1911 | char *reg2 = flip_region(reg, get_region_split_character(tb));
| ^~~
src/index.c:1743:27: note: expected ‘char *’ but argument is of type ‘const char *’
1743 | char *flip_region ( char* s, char region_split_character) {
| ~~~~~~^
src/index.c: In function ‘check_triangle’:
src/index.c:1975:48: warning: passing argument 1 of ‘flip_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1975 | const char *reg2 = flip_region(seqnames[i], ti_get_region_split_character(idx));
| ~~~~~~~~^~~
src/index.c:1743:27: note: expected ‘char *’ but argument is of type ‘const char *’
1743 | char *flip_region ( char* s, char region_split_character) {
| ~~~~~~^
src/index.c:1977:64: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1977 | if(ti_get_tid(idx, reg2)!=-1) { free(seqnames); free(reg2); return(0); } // not a triangle
| ^~~~
In file included from src/khash.h:94,
from src/index.c:4:
/usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’
687 | extern void free (void *__ptr) __THROW;
| ~~~~~~^~~~~
src/index.c:1978:14: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1978 | free(reg2);
| ^~~~
/usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’
687 | extern void free (void *__ptr) __THROW;
| ~~~~~~^~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.13 -c src/knetfile.c -o build/temp.linux-aarch64-cpython-313/src/knetfile.o
In file included from src/knetfile.c:49:
src/knetfile.c: In function ‘kftp_send_cmd’:
src/knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
src/knetfile.c:239:9: note: in expansion of macro ‘netwrite’
239 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
| ^~~~~~~~
src/knetfile.c: In function ‘khttp_connect_file’:
src/knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
src/knetfile.c:418:9: note: in expansion of macro ‘netwrite’
418 | netwrite(fp->fd, buf, l);
| ^~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.13 -c src/kstring.c -o build/temp.linux-aarch64-cpython-313/src/kstring.o
src/kstring.c: In function ‘ksprintf’:
src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
15 | if (l + 1 > s->m - s->l) {
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.13 -c src/pairixmodule.c -o build/temp.linux-aarch64-cpython-313/src/pairixmodule.o
src/pairixmodule.c: In function ‘pairix_new’:
src/pairixmodule.c:367:9: warning: unused variable ‘i’ [-Wunused-variable]
367 | int i;
| ^
src/pairixmodule.c: In function ‘pairix_querys_2D’:
src/pairixmodule.c:559:28: warning: passing argument 1 of ‘flip_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
559 | reg2 = flip_region(reg, get_region_split_character(self->tb));
| ^~~
In file included from src/pairixmodule.c:34:
src/pairix.h:223:33: note: expected ‘char *’ but argument is of type ‘const char *’
223 | char* flip_region(char *s, char region_split_character);
| ~~~~~~^
src/pairixmodule.c: In function ‘pairix_get_header’:
src/pairixmodule.c:693:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
693 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
src/pairixmodule.c:704:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
704 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
src/pairixmodule.c: In function ‘pairix_get_chromsize’:
src/pairixmodule.c:726:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
726 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
src/pairixmodule.c:738:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
738 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/bgzf.o build/temp.linux-aarch64-cpython-313/src/bgzip.o build/temp.linux-aarch64-cpython-313/src/index.o build/temp.linux-aarch64-cpython-313/src/knetfile.o build/temp.linux-aarch64-cpython-313/src/kstring.o build/temp.linux-aarch64-cpython-313/src/pairixmodule.o -L/usr/lib/aarch64-linux-gnu -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/pypairix.cpython-313-aarch64-linux-gnu.so
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_ext
building 'pypairix' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/bgzf.c -o build/temp.linux-aarch64-cpython-312/src/bgzf.o
src/bgzf.c: In function ‘bgzf_block_length’:
src/bgzf.c:331:34: warning: unused variable ‘remaining’ [-Wunused-variable]
331 | int count, block_length, remaining;
| ^~~~~~~~~
src/bgzf.c:330:47: warning: unused variable ‘compressed_block’ [-Wunused-variable]
330 | uint8_t header[BLOCK_HEADER_LENGTH], *compressed_block;
| ^~~~~~~~~~~~~~~~
src/bgzf.c: In function ‘bgzf_flush’:
src/bgzf.c:419:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
419 | if (fwrite(fp->compressed_block, 1, block_length, fp->fp) != block_length) {
| ^~
src/bgzf.c: In function ‘bgzf_close’:
src/bgzf.c:456:18: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
456 | int ret, count, block_length;
| ^~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/bgzip.c -o build/temp.linux-aarch64-cpython-312/src/bgzip.o
src/bgzip.c: In function ‘main’:
src/bgzip.c:198:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | write(f_dst, buffer, c);
| ^~~~~~~~~~~~~~~~~~~~~~~
src/bgzip.c: In function ‘write_open’:
src/bgzip.c:57:25: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
57 | scanf("%c", &c);
| ^~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/index.c -o build/temp.linux-aarch64-cpython-312/src/index.o
src/index.c: In function ‘merge_chunks’:
src/index.c:354:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
354 | for (l = 1; l < p->n; ++l) {
| ^
src/index.c: In function ‘ti_index_core’:
src/index.c:399:28: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
399 | if (lineno <= idx->conf.line_skip || str->s[0] == idx->conf.meta_char) {
| ^~
src/index.c:423:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
423 | if (intv.bin != last_bin) { // then possibly write the binning index
| ^~
src/index.c:431:35: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
431 | if (bgzf_tell(fp) <= last_off) {
| ^~
src/index.c: In function ‘ti_index_save’:
src/index.c:510:31: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘khint_t’ {aka ‘unsigned int’} [-Wsign-compare]
510 | for (i = 0; i < kh_size(idx->tname); ++i)
| ^
src/index.c:514:31: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘khint_t’ {aka ‘unsigned int’} [-Wsign-compare]
514 | for (i = 0; i < kh_size(idx->tname); ++i)
| ^
src/index.c:534:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
534 | for (x = 0; (int)x < p->n; ++x) {
| ^
src/index.c:539:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
539 | for (x = 0; (int)x < p->n; ++x) {
| ^
src/index.c: In function ‘ti_index_load_core’:
src/index.c:659:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
659 | for (x = 0; x < p->n; ++x) {
| ^
src/index.c: In function ‘ti_parse_region2d’:
src/index.c:864:69: warning: passing argument 1 of ‘ti_get_region_split_character’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
864 | char region_split_character = ti_get_region_split_character(idx);
| ^~~
In file included from src/index.c:11:
src/pairix.h:218:56: note: expected ‘ti_index_t *’ {aka ‘struct __ti_index_t *’} but argument is of type ‘const ti_index_t *’ {aka ‘const struct __ti_index_t *’}
218 | char ti_get_region_split_character(ti_index_t *idx);
| ~~~~~~~~~~~~^~~
src/index.c:878:30: warning: passing argument 1 of ‘ti_get_sc2’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
878 | int dim = ti_get_sc2(idx)+1==0?1:2;
| ^~~
src/pairix.h:209:36: note: expected ‘ti_index_t *’ {aka ‘struct __ti_index_t *’} but argument is of type ‘const ti_index_t *’ {aka ‘const struct __ti_index_t *’}
209 | int ti_get_sc2(ti_index_t *idx);
| ~~~~~~~~~~~~^~~
src/index.c: In function ‘reg2bins’:
src/index.c:974:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
974 | for (k = 1 + (beg>>TAD_LIDX_SHIFT_PL12); k <= 1 + (end>>TAD_LIDX_SHIFT_PL12); ++k) list[i++] = k;
| ^~
src/index.c:975:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
975 | for (k = 9 + (beg>>TAD_LIDX_SHIFT_PL9); k <= 9 + (end>>TAD_LIDX_SHIFT_PL9); ++k) list[i++] = k;
| ^~
src/index.c:976:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
976 | for (k = 73 + (beg>>TAD_LIDX_SHIFT_PL6); k <= 73 + (end>>TAD_LIDX_SHIFT_PL6); ++k) list[i++] = k;
| ^~
src/index.c:977:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
977 | for (k = 585 + (beg>>TAD_LIDX_SHIFT_PL3); k <= 585 + (end>>TAD_LIDX_SHIFT_PL3); ++k) list[i++] = k;
| ^~
src/index.c:978:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
978 | for (k = 4681 + (beg>>TAD_LIDX_SHIFT); k <= 4681 + (end>>TAD_LIDX_SHIFT); ++k) list[i++] = k;
| ^~
src/index.c: In function ‘ti_iter_query’:
src/index.c:1038:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
1038 | for (j = 0; j < p->n; ++j)
| ^
src/index.c: In function ‘ti_querys_2d_general’:
src/index.c:1242:30: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1242 | *sp=0; char *chr1 = reg;
| ^~~
src/index.c: In function ‘ti_query_2d_tid’:
src/index.c:1417:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
1417 | if (name == 0) return (int)ti_iter_first();
| ^
src/index.c: In function ‘create_merged_iter’:
src/index.c:1469:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
1469 | if( miter->iu = calloc(n,sizeof(iter_unit*))) {
| ^~~~~
src/index.c: In function ‘merged_ti_read’:
src/index.c:1537:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1537 | miu[i]->s = ti_iter_read(miu[i]->t->fp, miu[i]->iter, miu[i]->len, seqonly);
| ^
src/index.c:1543:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1543 | miu[0]->s = ti_iter_read(miu[0]->t->fp, miu[0]->iter, miu[0]->len, seqonly); // get next entry for the flushed iter
| ^
src/index.c: In function ‘sequential_ti_read’:
src/index.c:1573:15: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1573 | char *s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0);
| ^~~~~~~~~~~~
src/index.c:1576:9: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1576 | s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0);
| ^
src/index.c: In function ‘flip_region’:
src/index.c:1744:19: warning: variable ‘split_pos’ set but not used [-Wunused-but-set-variable]
1744 | int l, i, l2, split_pos;
| ^~~~~~~~~
src/index.c: In function ‘querys_2D_wrapper’:
src/index.c:1911:34: warning: passing argument 1 of ‘flip_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1911 | char *reg2 = flip_region(reg, get_region_split_character(tb));
| ^~~
src/index.c:1743:27: note: expected ‘char *’ but argument is of type ‘const char *’
1743 | char *flip_region ( char* s, char region_split_character) {
| ~~~~~~^
src/index.c: In function ‘check_triangle’:
src/index.c:1975:48: warning: passing argument 1 of ‘flip_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1975 | const char *reg2 = flip_region(seqnames[i], ti_get_region_split_character(idx));
| ~~~~~~~~^~~
src/index.c:1743:27: note: expected ‘char *’ but argument is of type ‘const char *’
1743 | char *flip_region ( char* s, char region_split_character) {
| ~~~~~~^
src/index.c:1977:64: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1977 | if(ti_get_tid(idx, reg2)!=-1) { free(seqnames); free(reg2); return(0); } // not a triangle
| ^~~~
In file included from src/khash.h:94,
from src/index.c:4:
/usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’
687 | extern void free (void *__ptr) __THROW;
| ~~~~~~^~~~~
src/index.c:1978:14: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1978 | free(reg2);
| ^~~~
/usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’
687 | extern void free (void *__ptr) __THROW;
| ~~~~~~^~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/knetfile.c -o build/temp.linux-aarch64-cpython-312/src/knetfile.o
In file included from src/knetfile.c:49:
src/knetfile.c: In function ‘kftp_send_cmd’:
src/knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
src/knetfile.c:239:9: note: in expansion of macro ‘netwrite’
239 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
| ^~~~~~~~
src/knetfile.c: In function ‘khttp_connect_file’:
src/knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
src/knetfile.c:418:9: note: in expansion of macro ‘netwrite’
418 | netwrite(fp->fd, buf, l);
| ^~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-aarch64-cpython-312/src/kstring.o
src/kstring.c: In function ‘ksprintf’:
src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
15 | if (l + 1 > s->m - s->l) {
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/pairixmodule.c -o build/temp.linux-aarch64-cpython-312/src/pairixmodule.o
src/pairixmodule.c: In function ‘pairix_new’:
src/pairixmodule.c:367:9: warning: unused variable ‘i’ [-Wunused-variable]
367 | int i;
| ^
src/pairixmodule.c: In function ‘pairix_querys_2D’:
src/pairixmodule.c:559:28: warning: passing argument 1 of ‘flip_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
559 | reg2 = flip_region(reg, get_region_split_character(self->tb));
| ^~~
In file included from src/pairixmodule.c:34:
src/pairix.h:223:33: note: expected ‘char *’ but argument is of type ‘const char *’
223 | char* flip_region(char *s, char region_split_character);
| ~~~~~~^
src/pairixmodule.c: In function ‘pairix_get_header’:
src/pairixmodule.c:693:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
693 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
src/pairixmodule.c:704:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
704 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
src/pairixmodule.c: In function ‘pairix_get_chromsize’:
src/pairixmodule.c:726:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
726 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
src/pairixmodule.c:738:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
738 | while ((s = sequential_ti_read(siter, &len)) != 0) {
| ^
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/bgzf.o build/temp.linux-aarch64-cpython-312/src/bgzip.o build/temp.linux-aarch64-cpython-312/src/index.o build/temp.linux-aarch64-cpython-312/src/knetfile.o build/temp.linux-aarch64-cpython-312/src/kstring.o build/temp.linux-aarch64-cpython-312/src/pairixmodule.o -L/usr/lib/aarch64-linux-gnu -lz -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/pypairix.cpython-312-aarch64-linux-gnu.so
dh_auto_test -O--buildsystem=pybuild
I: pybuild pybuild:308: cp -a /<<PKGBUILDDIR>>/samples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build; cp -a /<<PKGBUILDDIR>>/VERSION.txt /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build;
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build; python3.13 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.3.0
collected 48 items
test/test_oldindex.py ........................ [ 50%]
test/test_oldindex2.py ........................ [100%]
=============================== warnings summary ===============================
test/test_oldindex.py:60
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/test/test_oldindex.py:60: SyntaxWarning: invalid escape sequence '\s'
fields = line.rstrip().split('\s+')
test/test_oldindex2.py:59
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/test/test_oldindex2.py:59: SyntaxWarning: invalid escape sequence '\s'
fields = line.rstrip().split('\s+')
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================== 48 passed, 2 warnings in 4.89s ========================
The file is a triangle.
The file is a triangle.
The file is not a triangle.
The file is a triangle.
The file is a triangle.
The file is not a triangle.
I: pybuild pybuild:308: cp -a /<<PKGBUILDDIR>>/samples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build; cp -a /<<PKGBUILDDIR>>/VERSION.txt /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build;
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build; python3.12 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.3.0
collected 48 items
test/test_oldindex.py ........................ [ 50%]
test/test_oldindex2.py ........................ [100%]
=============================== warnings summary ===============================
test/test_oldindex.py:60
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/test/test_oldindex.py:60: SyntaxWarning: invalid escape sequence '\s'
fields = line.rstrip().split('\s+')
test/test_oldindex2.py:59
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/test/test_oldindex2.py:59: SyntaxWarning: invalid escape sequence '\s'
fields = line.rstrip().split('\s+')
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================== 48 passed, 2 warnings in 5.23s ========================
The file is a triangle.
The file is a triangle.
The file is not a triangle.
The file is a triangle.
The file is a triangle.
The file is not a triangle.
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pairix
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pairix
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/VERSION.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/pypairix.cpython-313-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/4dn.bsorted.chr21_22_only.largechr.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_4dn_2.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/hg19.chrom.sizes.-chr -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/mock.largechr.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test.bed -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_4dn_2.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_4dn.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/hg19.chrom.sizes.chr21_22_only:50000 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test.regions -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_juicer_shortform.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_juicer_shortform.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_old_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/hg19.chrom.sizes.chr21_22_only -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test.regions2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/mock.largechr.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/mock.largechr.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/test_4dn.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/mock.largechr.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/test_4dn.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index2
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/hg19.chrom.sizes.-chr -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/mock.largechr.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test.bed -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_4dn.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only:50000 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test.regions -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_juicer_shortform.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_juicer_shortform.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_old_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test.regions2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/mock.largechr.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_4dn.cp.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_old_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_4dn.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_4dn.cp.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_old_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_4dn.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/samples
running install_egg_info
running egg_info
creating pypairix.egg-info
writing pypairix.egg-info/PKG-INFO
writing dependency_links to pypairix.egg-info/dependency_links.txt
writing top-level names to pypairix.egg-info/top_level.txt
writing manifest file 'pypairix.egg-info/SOURCES.txt'
reading manifest file 'pypairix.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'pypairix.egg-info/SOURCES.txt'
Copying pypairix.egg-info to /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.13/dist-packages/pypairix-0.3.8.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pairix
/usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/VERSION.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.largechr.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn_2.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/hg19.chrom.sizes.-chr -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/mock.largechr.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test.bed -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn_2.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/hg19.chrom.sizes.chr21_22_only:50000 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test.regions -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/hg19.chrom.sizes.chr21_22_only -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test.regions2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/mock.largechr.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/mock.largechr.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/test_4dn.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/mock.largechr.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/test_4dn.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2
creating /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/hg19.chrom.sizes.-chr -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/mock.largechr.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test.bed -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only:50000 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test.regions -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.txt -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test.regions2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/mock.largechr.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn.cp.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn.cp.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.txt.bsorted.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.pairs -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn.pairs.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pairix/build/pypairix.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages
running install_egg_info
running egg_info
writing pypairix.egg-info/PKG-INFO
writing dependency_links to pypairix.egg-info/dependency_links.txt
writing top-level names to pypairix.egg-info/top_level.txt
reading manifest file 'pypairix.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'pypairix.egg-info/SOURCES.txt'
Copying pypairix.egg-info to /<<PKGBUILDDIR>>/debian/python3-pairix/usr/lib/python3.12/dist-packages/pypairix-0.3.8.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
tar caf samples.tar.xz samples --mode=go=rX,u+rw,a-s --owner=0 --group=0 --numeric-owner --sort=name
dh_install
find debian/python3-pairix/usr/lib -name samples -type d | xargs rm -rf
find debian/*/usr/lib -name VERSION.txt -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_lintian -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined
dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined
dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined
dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pairix' in '../python3-pairix_0.3.8-1_arm64.deb'.
dpkg-deb: building package 'python3-pairix-dbgsym' in '../python3-pairix-dbgsym_0.3.8-1_arm64.deb'.
dpkg-deb: building package 'python-pairix-examples' in '../python-pairix-examples_0.3.8-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-pairix_0.3.8-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../python-pairix_0.3.8-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T05:45:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-pairix_0.3.8-1_arm64.changes:
------------------------------------
Format: 1.8
Date: Thu, 22 Aug 2024 23:02:54 +0200
Source: python-pairix
Binary: python-pairix-examples python3-pairix python3-pairix-dbgsym
Architecture: all arm64
Version: 0.3.8-1
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
python-pairix-examples - 1D/2D indexing and querying with a pair of genomic coordinates (e
python3-pairix - 1D/2D indexing and querying with a pair of genomic coordinates
Closes: 1075419
Changes:
python-pairix (0.3.8-1) unstable; urgency=medium
.
* New upstream version 0.3.8
* gcc-14.patch: new: fix various incompatible pointer types.
(Closes: #1075419)
* d/control: declare compliance to standards version 4.7.0.
* d/python3-pairix.lintian-overrides: refresh override.
* d/control: add myself to uploaders.
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Files:
53e34f193af0dc1ce9ca2f76e7b77c4d 172575708 science optional python-pairix-examples_0.3.8-1_all.deb
740c10b35de2856b02948710c158c839 7057 science optional python-pairix_0.3.8-1_arm64.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: python-pairix
Binary: python-pairix-examples python3-pairix python3-pairix-dbgsym
Architecture: all arm64
Version: 0.3.8-1
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Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 05:45:12 +0000
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LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1724360574"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python-pairix-examples_0.3.8-1_all.deb
--------------------------------------
new Debian package, version 2.0.
size 172575708 bytes: control archive=1336 bytes.
1297 bytes, 30 lines control
1119 bytes, 12 lines md5sums
Package: python-pairix-examples
Source: python-pairix
Version: 0.3.8-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 168538
Enhances: python3-pairix
Section: science
Priority: optional
Multi-Arch: foreign
Homepage: https://github.com/4dn-dcic/pairix
Description: 1D/2D indexing and querying with a pair of genomic coordinates (examples)
Pairix is a tool for indexing and querying on a block-compressed text
file containing pairs of genomic coordinates.
.
Pairix is a stand-alone C program that was written on top of tabix as a
tool for the 4DN-standard pairs file format describing Hi-C data:
pairs_format_specification.md
.
However, Pairix can be used as a generic tool for indexing and querying
any bgzipped text file containing genomic coordinates, for either 2D- or
1D- indexing and querying.
.
For example: given the custom text file below, you want to extract
specific lines from the Pairs file further below. An awk command would
read the Pairs file from beginning to end. Pairix creates an index and
uses it to access the file from a relevant position by taking advantage
of bgzf compression, allowing for a fast query on large files.
.
This package contains some example data to test the package.
drwxr-xr-x root/root 0 2024-08-22 21:02 ./
drwxr-xr-x root/root 0 2024-08-22 21:02 ./usr/
drwxr-xr-x root/root 0 2024-08-22 21:02 ./usr/share/
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python3-pairix-dbgsym_0.3.8-1_arm64.deb
---------------------------------------
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size 191376 bytes: control archive=660 bytes.
455 bytes, 13 lines control
304 bytes, 3 lines md5sums
Package: python3-pairix-dbgsym
Source: python-pairix
Version: 0.3.8-1
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Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 234
Depends: python3-pairix (= 0.3.8-1)
Section: debug
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python3-pairix_0.3.8-1_arm64.deb
--------------------------------
new Debian package, version 2.0.
size 41616 bytes: control archive=1240 bytes.
1230 bytes, 28 lines control
753 bytes, 8 lines md5sums
Package: python3-pairix
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Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 289
Depends: python3 (<< 3.14), python3 (>= 3.12~)
Section: python
Priority: optional
Multi-Arch: same
Homepage: https://github.com/4dn-dcic/pairix
Description: 1D/2D indexing and querying with a pair of genomic coordinates
Pairix is a tool for indexing and querying on a block-compressed text
file containing pairs of genomic coordinates.
.
Pairix is a stand-alone C program that was written on top of tabix as a
tool for the 4DN-standard pairs file format describing Hi-C data:
pairs_format_specification.md
.
However, Pairix can be used as a generic tool for indexing and querying
any bgzipped text file containing genomic coordinates, for either 2D- or
1D- indexing and querying.
.
For example: given the custom text file below, you want to extract
specific lines from the Pairs file further below. An awk command would
read the Pairs file from beginning to end. Pairix creates an index and
uses it to access the file from a relevant position by taking advantage
of bgzf compression, allowing for a fast query on large files.
drwxr-xr-x root/root 0 2024-08-22 21:02 ./
drwxr-xr-x root/root 0 2024-08-22 21:02 ./usr/
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-rw-r--r-- root/root 89 2024-08-22 21:02 ./usr/share/lintian/overrides/python3-pairix
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
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Reading package lists...
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-------------------------------------------------------
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sbuild-build-depends-lintian-dummy
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Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
E: python3-pairix: missing-dependency-on-libc needed by usr/lib/python3/dist-packages/pypairix.cpython-312-aarch64-linux-gnu.so and 1 others
W: python-pairix changes: distribution-and-changes-mismatch sid unstable
W: python3-pairix: mismatched-override missing-dependency-on-libc needed by usr/lib/python3/dist-packages/pypairix.cpython-*.so [usr/share/lintian/overrides/python3-pairix:1]
N: 0 hints overridden; 1 unused override
E: Lintian run failed (runtime error)
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 1045260
Build-Time: 54
Distribution: sid
Host Architecture: arm64
Install-Time: 35
Job: /tmp/debusine-fetch-exec-upload-7pnnm2k8/python-pairix_0.3.8-1.dsc
Lintian: error
Machine Architecture: arm64
Package: python-pairix
Package-Time: 128
Source-Version: 0.3.8-1
Space: 1045260
Status: successful
Version: 0.3.8-1
--------------------------------------------------------------------------------
Finished at 2024-10-24T05:45:14Z
Build needed 00:02:08, 1045260k disk space