Artifact fast5_0.6.5-8_arm64-2024-10-24T06:37:49Z

Metadata
bd_uninstallable: null
filename: fast5_0.6.5-8_arm64-2024-10-24T06:37:49Z.build
source: fast5
version: 0.6.5-8

File

fast5_0.6.5-8_arm64-2024-10-24T06:37:49Z.build
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sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-06.freexian.com

+==============================================================================+
| fast5 0.6.5-8 (arm64)                        Thu, 24 Oct 2024 06:37:49 +0000 |
+==============================================================================+

Package: fast5
Version: 0.6.5-8
Source Version: 0.6.5-8
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary

I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/872923/system.tar.xz to /tmp/tmp.sbuild.AuzlRy0jKi...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


rm -f /etc/resolv.conf
----------------------


I: Finished running 'rm -f /etc/resolv.conf'.

Finished processing commands.
--------------------------------------------------------------------------------
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/libpython3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/libpython3-all-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/libpython3-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/libpython3-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/libpython3-stdlib_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3-full_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3-minimal_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3-nopie_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3-venv_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/2to3_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/idle_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3-doc_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-5q86stl_/python3-examples_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/fast5-SUmbeS/resolver-P15Dak' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

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The following packages will be upgraded:
  apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
  liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 5601 kB of archives.
After this operation, 142 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main arm64 coreutils arm64 9.5-1 [2858 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.10 [922 kB]
Get:3 http://deb.debian.org/debian sid/main arm64 base-passwd arm64 3.6.5 [52.8 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.10 [1332 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 sysvinit-utils arm64 3.11-1 [33.0 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3.1 [9256 B]
Get:8 http://deb.debian.org/debian sid/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/tmp/debusine-fetch-exec-upload-5q86stl_/fast5_0.6.5-8.dsc exists in /tmp/debusine-fetch-exec-upload-5q86stl_; copying to chroot
I: NOTICE: Log filtering will replace 'build/fast5-SUmbeS/fast5-0.6.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fast5-SUmbeS' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Get:3 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ Release.gpg
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Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev build-essential cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
  g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers libaec-dev
  libaec0 libasan8 libboost-python-dev libboost-python1.83-dev
  libboost-python1.83.0 libboost1.83-dev libbrotli-dev libc-dev-bin libc6-dev
  libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdebhelper-perl
  libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev libfakeroot
  libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgmp-dev
  libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev
  libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64
  libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0
  libidn2-dev libisl23 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 libmpfr6
  libncursesw6 libnghttp2-dev libnsl2 libp11-kit-dev libpkgconf3 libpsl-dev
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
  libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
  libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib librtmp-dev
  libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev
  libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libunbound8
  libzstd-dev linux-libc-dev m4 media-types nettle-dev pkgconf pkgconf-bin
  po-debconf python3 python3-all python3-all-dev python3-autocommand
  python3-dev python3-inflect python3-jaraco.context python3-jaraco.functools
  python3-minimal python3-more-itertools python3-pkg-resources
  python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
  python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
  python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
  cpp-14-doc cython-doc dh-make flit python3-build python3-installer
  python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
  gdb-aarch64-linux-gnu libboost1.83-doc gccxml libboost-atomic1.83-dev
  libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
  libboost-contract1.83-dev libboost-coroutine1.83-dev
  libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
  libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
  libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
  libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
  libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
  libboost-numpy1.83-dev libboost-program-options1.83-dev
  libboost-random1.83-dev libboost-regex1.83-dev
  libboost-serialization1.83-dev libboost-stacktrace1.83-dev
  libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
  libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
  libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
  libc-devtools glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev
  gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc
  libhdf5-doc libnghttp2-doc p11-kit-doc libssl-doc libstdc++-14-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
  python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv
  python3.12-doc binfmt-support python3.13-venv python3.13-doc
Recommended packages:
  manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
  libtasn1-doc libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev build-essential cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
  g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers libaec-dev
  libaec0 libasan8 libboost-python-dev libboost-python1.83-dev
  libboost-python1.83.0 libboost1.83-dev libbrotli-dev libc-dev-bin libc6-dev
  libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdebhelper-perl
  libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev libfakeroot
  libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgmp-dev
  libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev
  libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64
  libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0
  libidn2-dev libisl23 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 libmpfr6
  libncursesw6 libnghttp2-dev libnsl2 libp11-kit-dev libpkgconf3 libpsl-dev
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
  libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
  libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib librtmp-dev
  libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev
  libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libunbound8
  libzstd-dev linux-libc-dev m4 media-types nettle-dev pkgconf pkgconf-bin
  po-debconf python3 python3-all python3-all-dev python3-autocommand
  python3-dev python3-inflect python3-jaraco.context python3-jaraco.functools
  python3-minimal python3-more-itertools python3-pkg-resources
  python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
  python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
  python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded.
Need to get 119 MB/119 MB of archives.
After this operation, 611 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B]
Get:2 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:6 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:7 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:8 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:9 file:/<<BUILDDIR>>/resolver-HhhsCr/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:10 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:37 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:39 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:48 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:51 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:53 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:55 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:56 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:57 http://deb.debian.org/debian sid/main arm64 cython3 arm64 3.0.11+dfsg-1 [2192 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:63 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libsz2 arm64 1.1.3-1 [7664 B]
Get:84 http://deb.debian.org/debian sid/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB]
Get:86 http://deb.debian.org/debian sid/main arm64 libboost-python1.83.0 arm64 1.83.0-3.2 [296 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libboost-python1.83-dev arm64 1.83.0-3.2 [321 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B]
Get:97 http://deb.debian.org/debian sid/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 libunbound8 arm64 1.22.0-1 [553 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 nettle-dev arm64 3.10-1 [1323 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libcurl4-openssl-dev arm64 8.10.1-2 [447 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Setting up python3-minimal (3.12.6-1+debusine1) ...
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Setting up python3 (3.12.6-1+debusine1) ...
Setting up libpython3.12-dev:arm64 (3.12.7-1) ...
Setting up python3-zipp (3.20.2-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up gcc-14 (14.2.0-7) ...
Setting up libpython3.13-dev:arm64 (3.13.0-1) ...
Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up python3.12-dev (3.12.7-1) ...
Setting up cython3 (3.0.11+dfsg-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up libssh2-1-dev:arm64 (1.11.1-1) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-7) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3.13-dev (3.13.0-1) ...
Setting up python3-typeguard (4.3.0-1) ...
Setting up python3-all (3.12.6-1+debusine1) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up libcurl4-openssl-dev:arm64 (8.10.1-2) ...
Setting up libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-dev (3.12.6-1+debusine1) ...
Setting up libboost-python1.83-dev (1.83.0-3.2) ...
Setting up libhdf5-dev (1.10.10+repack-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
Setting up python3-pkg-resources (74.1.2-2) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (74.1.2-2) ...
Setting up debhelper (13.20) ...
Setting up libboost-python-dev (1.83.0.2+b2) ...
Setting up dh-python (6.20240824) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 gcc-14-aarch64-linux-gnu_14.2.0-7 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: fast5
Binary: fast5, libfast5-dev, python3-fast5
Architecture: any all
Version: 0.6.5-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/mateidavid/fast5
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/fast5
Vcs-Git: https://salsa.debian.org/med-team/fast5.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper
Package-List:
 fast5 deb science optional arch=all
 libfast5-dev deb libdevel optional arch=all
 python3-fast5 deb python optional arch=any
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Dgit: e4e301368217ac4495c595eb025838aebe652a92 debian archive/debian/0.6.5-8 https://git.dgit.debian.org/fast5

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6hoExiacAhDufinPZt7nJ1fQMXah7GvJKBfmegckFM92my5S2AVYQ32MVXyGt9Ir
YSjGmDKSjbEffps=
=PoNG
-----END PGP SIGNATURE-----

gpgv: Signature made Wed Aug 21 15:10:31 2024 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-8.dsc: no acceptable signature found
dpkg-source: info: extracting fast5 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz
dpkg-source: info: unpacking fast5_0.6.5-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rpath.patch
dpkg-source: info: applying gcc-12.patch
dpkg-source: info: applying build-flags.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package fast5
dpkg-buildpackage: info: source version 0.6.5-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild \
--sourcedirectory=python
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean 
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/python/fast5/fast5.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_fast5/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_fast5/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
rm -rf python/fast5/fast5.cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild \
--sourcedirectory=python
   dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:311: python3.13 setup.py config 
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/python/fast5/fast5.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running config
I: pybuild base:311: python3.12 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:311: /usr/bin/python3.13 setup.py build 
running build
running build_ext
building 'fast5' extension
creating build
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/fast5
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -fPIC -I../include -I../src -I/usr/include/python3.13 -c fast5/fast5.cpp -o build/temp.linux-aarch64-cpython-313/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
In file included from /usr/include/python3.13/internal/pycore_code.h:12,
                 from /usr/include/python3.13/internal/pycore_frame.h:13,
                 from fast5/fast5.cpp:25224:
/usr/include/python3.13/internal/pycore_backoff.h:19:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
   19 |         struct {
      |                ^
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API build/temp.linux-aarch64-cpython-313/fast5/fast5.o -L/usr/lib/aarch64-linux-gnu/hdf5/serial -L/usr/lib/aarch64-linux-gnu -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_fast5/build/fast5.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting bin/f5ls -> build/scripts-3.13
copying and adjusting bin/f5pack -> build/scripts-3.13
changing mode of build/scripts-3.13/f5ls from 644 to 755
changing mode of build/scripts-3.13/f5pack from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build 
running build
running build_ext
building 'fast5' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/fast5
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -fPIC -I../include -I../src -I/usr/include/python3.12 -c fast5/fast5.cpp -o build/temp.linux-aarch64-cpython-312/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API build/temp.linux-aarch64-cpython-312/fast5/fast5.o -L/usr/lib/aarch64-linux-gnu/hdf5/serial -L/usr/lib/aarch64-linux-gnu -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_fast5/build/fast5.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting bin/f5ls -> build/scripts-3.12
copying and adjusting bin/f5pack -> build/scripts-3.12
changing mode of build/scripts-3.12/f5ls from 644 to 755
changing mode of build/scripts-3.12/f5pack from 644 to 755
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5ls f5ls.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5ls-full f5ls-full.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o hdf5-mod hdf5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5-mod f5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.13
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.13/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_fast5/build/fast5.cpython-313-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.13/dist-packages
running install_egg_info
running egg_info
creating fast5.egg-info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
writing manifest file 'fast5.egg-info/SOURCES.txt'
dependency ../include/fast5.hpp won't be automatically included in the manifest: the path can't have `..` segments
dependency ../src/File_Packer.hpp won't be automatically included in the manifest: the path can't have `..` segments
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.13/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.13/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.13/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 755
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.12/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_fast5/build/fast5.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.12/dist-packages
running install_egg_info
running egg_info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
dependency ../include/fast5.hpp won't be automatically included in the manifest: the path can't have `..` segments
dependency ../src/File_Packer.hpp won't be automatically included in the manifest: the path can't have `..` segments
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.12/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.12/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.12/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 755
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/fast5/usr/bin/
mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_installsystemduser -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_link -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python
   debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_compress -X .cpp -X .hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python
   dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-8_arm64.deb'.
dpkg-deb: building package 'fast5' in '../fast5_0.6.5-8_all.deb'.
dpkg-deb: building package 'libfast5-dev' in '../libfast5-dev_0.6.5-8_all.deb'.
dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-8_arm64.deb'.
 dpkg-genbuildinfo --build=binary -O../fast5_0.6.5-8_arm64.buildinfo
 dpkg-genchanges --build=binary -O../fast5_0.6.5-8_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T06:40:59Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


fast5_0.6.5-8_arm64.changes:
----------------------------

Format: 1.8
Date: Wed, 21 Aug 2024 16:53:26 +0200
Source: fast5
Binary: fast5 libfast5-dev python3-fast5 python3-fast5-dbgsym
Architecture: all arm64
Version: 0.6.5-8
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
 fast5      - utilities for manipulating Oxford Nanopore Fast5 files
 libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Closes: 1078976
Changes:
 fast5 (0.6.5-8) unstable; urgency=medium
 .
   * d/control: set CPPFLAGS to add -DH5_USE_110_API.
     This fixes build failure with hdfs5 1.14.
     Thanks to Gilles Filippini <pini@debian.org> (Closes: #1078976)
   * d/control: declare compliance to standards version 4.7.0.
Checksums-Sha1:
 6cbc2c994bb0aaf7d880799b87a0c0a8e3a89997 7172 fast5_0.6.5-8_all.deb
 9cea950a22048f8ac5f30700d2b8227c626f93b4 8942 fast5_0.6.5-8_arm64.buildinfo
 674878e9bbcef94a99236b66deee64f10cd83a33 49008 libfast5-dev_0.6.5-8_all.deb
 7787b53bba36c0927d96473f6e7a2d3c434c516a 4842380 python3-fast5-dbgsym_0.6.5-8_arm64.deb
 ffd85a92a329ed4b74b7da78fa679d564be1073d 282164 python3-fast5_0.6.5-8_arm64.deb
Checksums-Sha256:
 9c35b495f4eb6638e686134c1c47aeb00b27d7d7e3387e122ee5f09b191795e7 7172 fast5_0.6.5-8_all.deb
 d62e6b80bbb557fd3ff270e54473f7542584876d25343115a2096a9feca4a352 8942 fast5_0.6.5-8_arm64.buildinfo
 58ffc26c4efe078386a4b01a3c0e0fb389e12f700234ae94380ee1cf8fe091fb 49008 libfast5-dev_0.6.5-8_all.deb
 f96b73598c80bb8738395a94122e0fd0010bc78b334e8606a3a9b7f79632d806 4842380 python3-fast5-dbgsym_0.6.5-8_arm64.deb
 991555705875f5bbf1e0ddcc5b42ecd5834f1a4d3bd2ff0af809a4d918c7ea31 282164 python3-fast5_0.6.5-8_arm64.deb
Files:
 4c8d506555ab9635ef2cb835bc476684 7172 science optional fast5_0.6.5-8_all.deb
 91f4a128683555ace5571eeb6da407d5 8942 science optional fast5_0.6.5-8_arm64.buildinfo
 45092099054b7d963c2dfc1e45857307 49008 libdevel optional libfast5-dev_0.6.5-8_all.deb
 623762f9e6f4e295a0ac3dac1bd23a7f 4842380 debug optional python3-fast5-dbgsym_0.6.5-8_arm64.deb
 20a1f87e6ce6c5b39eb637c30479baf5 282164 python optional python3-fast5_0.6.5-8_arm64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: fast5
Binary: fast5 libfast5-dev python3-fast5 python3-fast5-dbgsym
Architecture: all arm64
Version: 0.6.5-8
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 06:40:59 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-2),
 autotools-dev (= 20220109.1),
 base-files (= 13.5),
 base-passwd (= 3.6.5),
 bash (= 5.2.32-1+b2),
 binutils (= 2.43.1-5),
 binutils-aarch64-linux-gnu (= 2.43.1-5),
 binutils-common (= 2.43.1-5),
 bsdextrautils (= 2.40.2-9),
 bsdutils (= 1:2.40.2-9),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 coreutils (= 9.5-1),
 cpp (= 4:14.2.0-1),
 cpp-14 (= 14.2.0-7),
 cpp-14-aarch64-linux-gnu (= 14.2.0-7),
 cpp-aarch64-linux-gnu (= 4:14.2.0-1),
 cython3 (= 3.0.11+dfsg-1),
 dash (= 0.5.12-9),
 debconf (= 1.5.87),
 debhelper (= 13.20),
 debianutils (= 5.20),
 dh-autoreconf (= 20),
 dh-python (= 6.20240824),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.11),
 dpkg-dev (= 1.22.11),
 dwz (= 0.15-1+b1),
 file (= 1:5.45-3),
 findutils (= 4.10.0-3),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-7),
 g++-14-aarch64-linux-gnu (= 14.2.0-7),
 g++-aarch64-linux-gnu (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-14 (= 14.2.0-7),
 gcc-14-aarch64-linux-gnu (= 14.2.0-7),
 gcc-14-base (= 14.2.0-7),
 gcc-aarch64-linux-gnu (= 4:14.2.0-1),
 gettext (= 0.22.5-2),
 gettext-base (= 0.22.5-2),
 grep (= 3.11-4),
 groff-base (= 1.23.0-5),
 gzip (= 1.12-1.1),
 hdf5-helpers (= 1.10.10+repack-4),
 hostname (= 3.25),
 init-system-helpers (= 1.67),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2),
 libaec-dev (= 1.1.3-1),
 libaec0 (= 1.1.3-1),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-7),
 libatomic1 (= 14.2.0-7),
 libattr1 (= 1:2.5.2-2),
 libaudit-common (= 1:4.0.1-1),
 libaudit1 (= 1:4.0.1-1),
 libbinutils (= 2.43.1-5),
 libblkid1 (= 2.40.2-9),
 libboost-python-dev (= 1.83.0.2+b2),
 libboost-python1.83-dev (= 1.83.0-3.2),
 libboost-python1.83.0 (= 1.83.0-3.2),
 libboost1.83-dev (= 1.83.0-3.2),
 libbrotli-dev (= 1.1.0-2+b4),
 libbrotli1 (= 1.1.0-2+b4),
 libbz2-1.0 (= 1.0.8-6),
 libc-bin (= 2.40-3),
 libc-dev-bin (= 2.40-3),
 libc6 (= 2.40-3),
 libc6-dev (= 2.40-3),
 libcap-ng0 (= 0.8.5-3),
 libcap2 (= 1:2.66-5),
 libcc1-0 (= 14.2.0-7),
 libcom-err2 (= 1.47.1-1),
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 libcrypt1 (= 1:4.4.36-5),
 libctf-nobfd0 (= 2.43.1-5),
 libctf0 (= 2.43.1-5),
 libcurl4-openssl-dev (= 8.10.1-2),
 libcurl4t64 (= 8.10.1-2),
 libdb5.3t64 (= 5.3.28+dfsg2-9),
 libdebconfclient0 (= 0.272),
 libdebhelper-perl (= 13.20),
 libdpkg-perl (= 1.22.11),
 libelf1t64 (= 0.192-4),
 libevent-2.1-7t64 (= 2.1.12-stable-10),
 libexpat1 (= 2.6.3-1),
 libexpat1-dev (= 2.6.3-1),
 libffi8 (= 3.4.6-1),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libgcc-14-dev (= 14.2.0-7),
 libgcc-s1 (= 14.2.0-7),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgfortran5 (= 14.2.0-7),
 libgmp-dev (= 2:6.3.0+dfsg-2+b1),
 libgmp10 (= 2:6.3.0+dfsg-2+b1),
 libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1),
 libgnutls-dane0t64 (= 3.8.6-2),
 libgnutls-openssl27t64 (= 3.8.6-2),
 libgnutls28-dev (= 3.8.6-2),
 libgnutls30t64 (= 3.8.6-2),
 libgomp1 (= 14.2.0-7),
 libgprofng0 (= 2.43.1-5),
 libgssapi-krb5-2 (= 1.21.3-3),
 libhdf5-103-1t64 (= 1.10.10+repack-4),
 libhdf5-cpp-103-1t64 (= 1.10.10+repack-4),
 libhdf5-dev (= 1.10.10+repack-4),
 libhdf5-fortran-102t64 (= 1.10.10+repack-4),
 libhdf5-hl-100t64 (= 1.10.10+repack-4),
 libhdf5-hl-cpp-100t64 (= 1.10.10+repack-4),
 libhdf5-hl-fortran-100t64 (= 1.10.10+repack-4),
 libhogweed6t64 (= 3.10-1),
 libhwasan0 (= 14.2.0-7),
 libicu72 (= 72.1-5),
 libidn2-0 (= 2.3.7-2),
 libidn2-dev (= 2.3.7-2),
 libisl23 (= 0.27-1),
 libitm1 (= 14.2.0-7),
 libjansson4 (= 2.14-2+b2),
 libjpeg-dev (= 1:2.1.5-3),
 libjpeg62-turbo (= 1:2.1.5-3),
 libjpeg62-turbo-dev (= 1:2.1.5-3),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libjs-sphinxdoc (= 7.4.7-3),
 libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
 libk5crypto3 (= 1.21.3-3),
 libkeyutils1 (= 1.6.3-3.1),
 libkrb5-3 (= 1.21.3-3),
 libkrb5support0 (= 1.21.3-3),
 libldap-2.5-0 (= 2.5.18+dfsg-3+b1),
 liblsan0 (= 14.2.0-7),
 liblzma5 (= 5.6.2-2),
 libmagic-mgc (= 1:5.45-3),
 libmagic1t64 (= 1:5.45-3),
 libmd0 (= 1.1.0-2),
 libmount1 (= 2.40.2-9),
 libmpc3 (= 1.3.1-1+b2),
 libmpfr6 (= 4.2.1-1+b1),
 libncursesw6 (= 6.5-2),
 libnettle8t64 (= 3.10-1),
 libnghttp2-14 (= 1.63.0-1),
 libnghttp2-dev (= 1.63.0-1),
 libnsl2 (= 1.3.0-3+b2),
 libp11-kit-dev (= 0.25.5-2),
 libp11-kit0 (= 0.25.5-2),
 libpam-modules (= 1.5.3-7),
 libpam-modules-bin (= 1.5.3-7),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7),
 libpcre2-8-0 (= 10.42-4+b1),
 libperl5.40 (= 5.40.0-6),
 libpipeline1 (= 1.5.8-1),
 libpkgconf3 (= 1.8.1-4),
 libpsl-dev (= 0.21.2-1.1),
 libpsl5t64 (= 0.21.2-1.1),
 libpython3-all-dev (= 3.12.6-1+debusine1),
 libpython3-dev (= 3.12.6-1+debusine1),
 libpython3-stdlib (= 3.12.6-1+debusine1),
 libpython3.12-dev (= 3.12.7-1),
 libpython3.12-minimal (= 3.12.7-1),
 libpython3.12-stdlib (= 3.12.7-1),
 libpython3.12t64 (= 3.12.7-1),
 libpython3.13 (= 3.13.0-1),
 libpython3.13-dev (= 3.13.0-1),
 libpython3.13-minimal (= 3.13.0-1),
 libpython3.13-stdlib (= 3.13.0-1),
 libreadline8t64 (= 8.2-5),
 librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
 libsasl2-2 (= 2.1.28+dfsg1-8),
 libsasl2-modules-db (= 2.1.28+dfsg1-8),
 libseccomp2 (= 2.5.5-1+b1),
 libselinux1 (= 3.7-3),
 libsframe1 (= 2.43.1-5),
 libsmartcols1 (= 2.40.2-9),
 libsqlite3-0 (= 3.46.1-1),
 libssh2-1-dev (= 1.11.1-1),
 libssh2-1t64 (= 1.11.1-1),
 libssl-dev (= 3.3.2-1),
 libssl3t64 (= 3.3.2-1),
 libstdc++-14-dev (= 14.2.0-7),
 libstdc++6 (= 14.2.0-7),
 libsystemd0 (= 256.7-2),
 libsz2 (= 1.1.3-1),
 libtasn1-6 (= 4.19.0-3+b2),
 libtasn1-6-dev (= 4.19.0-3+b2),
 libtinfo6 (= 6.5-2),
 libtirpc-common (= 1.3.4+ds-1.3),
 libtirpc3t64 (= 1.3.4+ds-1.3),
 libtool (= 2.4.7-7),
 libtsan2 (= 14.2.0-7),
 libubsan1 (= 14.2.0-7),
 libuchardet0 (= 0.0.8-1+b1),
 libudev1 (= 256.7-2),
 libunbound8 (= 1.22.0-1),
 libunistring5 (= 1.2-1),
 libuuid1 (= 2.40.2-9),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
 libzstd-dev (= 1.5.6+dfsg-1),
 libzstd1 (= 1.5.6+dfsg-1),
 linux-libc-dev (= 6.11.4-1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20240905-1),
 media-types (= 10.1.0),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2),
 netbase (= 6.4),
 nettle-dev (= 3.10-1),
 openssl-provider-legacy (= 3.3.2-1),
 patch (= 2.7.6-7),
 perl (= 5.40.0-6),
 perl-base (= 5.40.0-6),
 perl-modules-5.40 (= 5.40.0-6),
 pkgconf (= 1.8.1-4),
 pkgconf-bin (= 1.8.1-4),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.12.6-1+debusine1),
 python3-all (= 3.12.6-1+debusine1),
 python3-all-dev (= 3.12.6-1+debusine1),
 python3-autocommand (= 2.2.2-3),
 python3-dev (= 3.12.6-1+debusine1),
 python3-inflect (= 7.3.1-2),
 python3-jaraco.context (= 6.0.0-1),
 python3-jaraco.functools (= 4.1.0-1),
 python3-minimal (= 3.12.6-1+debusine1),
 python3-more-itertools (= 10.5.0-1),
 python3-pkg-resources (= 74.1.2-2),
 python3-setuptools (= 74.1.2-2),
 python3-typeguard (= 4.3.0-1),
 python3-typing-extensions (= 4.12.2-2),
 python3-zipp (= 3.20.2-1),
 python3.12 (= 3.12.7-1),
 python3.12-dev (= 3.12.7-1),
 python3.12-minimal (= 3.12.7-1),
 python3.13 (= 3.13.0-1),
 python3.13-dev (= 3.13.0-1),
 python3.13-minimal (= 3.13.0-1),
 readline-common (= 8.2-5),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.11-1),
 tar (= 1.35+dfsg-3),
 tzdata (= 2024b-3),
 util-linux (= 2.40.2-9),
 xz-utils (= 5.6.2-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
 DEB_BUILD_OPTIONS="parallel=8"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1724252006"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


fast5_0.6.5-8_all.deb
---------------------

 new Debian package, version 2.0.
 size 7172 bytes: control archive=784 bytes.
     621 bytes,    14 lines      control
     234 bytes,     4 lines      md5sums
 Package: fast5
 Version: 0.6.5-8
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 30
 Depends: python3:any, python3-fast5 (>= 0.6.5-8)
 Section: science
 Priority: optional
 Homepage: https://github.com/mateidavid/fast5
 Description: utilities for manipulating Oxford Nanopore Fast5 files
  The data produced by Oxford Nanopore Technologies (ONT) sequencers
  are stored in fast5 files, based on the HDF5 file format, with one
  file per sequenced read. This package provides utilities to inspect
  these files, as well as to pack them for more effficient use.

drwxr-xr-x root/root         0 2024-08-21 14:53 ./
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/bin/
-rwxr-xr-x root/root     10187 2024-08-21 14:53 ./usr/bin/f5ls
-rwxr-xr-x root/root      9131 2024-08-21 14:53 ./usr/bin/f5pack
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/fast5/
-rw-r--r-- root/root      1174 2024-08-21 14:53 ./usr/share/doc/fast5/changelog.Debian.gz
-rw-r--r-- root/root      1440 2024-08-21 14:53 ./usr/share/doc/fast5/copyright


libfast5-dev_0.6.5-8_all.deb
----------------------------

 new Debian package, version 2.0.
 size 49008 bytes: control archive=1392 bytes.
     555 bytes,    15 lines      control
    2068 bytes,    27 lines      md5sums
 Package: libfast5-dev
 Source: fast5
 Version: 0.6.5-8
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 348
 Depends: libhdf5-dev | libhdf5-mpich-dev | libhdf5-openmpi-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/mateidavid/fast5
 Description: library for reading Oxford Nanopore Fast5 files -- headers
  A lightweight C++11 library to read raw signal data from Oxford
  Nanopore's FAST5 files.
  .
  This package provides the header files for development with fast5.

drwxr-xr-x root/root         0 2024-08-21 14:53 ./
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/
drwxr-xr-x root/root         0 2018-02-07 14:57 ./usr/include/
-rw-r--r-- root/root     88245 2018-02-07 14:57 ./usr/include/fast5.hpp
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/include/fast5/
-rw-r--r-- root/root      4159 2018-02-07 14:57 ./usr/include/fast5/Bit_Packer.hpp
-rw-r--r-- root/root     11089 2018-02-07 14:57 ./usr/include/fast5/Huffman_Packer.hpp
-rw-r--r-- root/root      2323 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ed_len_1.inl
-rw-r--r-- root/root        43 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ed_skip_1.inl
-rw-r--r-- root/root        68 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ev_move_1.inl
-rw-r--r-- root/root        47 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ev_rel_skip_1.inl
-rw-r--r-- root/root        82 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_fq_bp_1.inl
-rw-r--r-- root/root       518 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_fq_qv_1.inl
-rw-r--r-- root/root      4115 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_rw_1.inl
-rw-r--r-- root/root       148 2018-02-07 14:57 ./usr/include/fast5/fast5_version.hpp
-rw-r--r-- root/root     91167 2024-08-21 14:53 ./usr/include/fast5/hdf5_tools.hpp
-rw-r--r-- root/root     12829 2018-02-07 14:57 ./usr/include/fast5/logger.hpp
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/libfast5-dev/
-rw-r--r-- root/root      1771 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/README.org
-rw-r--r-- root/root      1179 2024-08-21 14:53 ./usr/share/doc/libfast5-dev/changelog.Debian.gz
-rw-r--r-- root/root      1440 2024-08-21 14:53 ./usr/share/doc/libfast5-dev/copyright
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/libfast5-dev/examples/
-rw-r--r-- root/root     39403 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/File_Packer.hpp
-rw-r--r-- root/root      2187 2024-08-21 14:53 ./usr/share/doc/libfast5-dev/examples/Makefile
-rw-r--r-- root/root      3382 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5-mod.cpp
-rw-r--r-- root/root     11160 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5dump.cpp
-rw-r--r-- root/root     13395 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5ls-full.cpp
-rw-r--r-- root/root      8614 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5ls.cpp
-rw-r--r-- root/root      9444 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5pack.cpp
-rw-r--r-- root/root     11373 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/hdf5-mod.cpp
-rw-r--r-- root/root      1231 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/huffman-decode.cpp
-rw-r--r-- root/root       962 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/huffman-encode.cpp
-rw-r--r-- root/root      7863 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/tmp.cpp


python3-fast5-dbgsym_0.6.5-8_arm64.deb
--------------------------------------

 new Debian package, version 2.0.
 size 4842380 bytes: control archive=664 bytes.
     445 bytes,    13 lines      control
     303 bytes,     3 lines      md5sums
 Package: python3-fast5-dbgsym
 Source: fast5
 Version: 0.6.5-8
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 5130
 Depends: python3-fast5 (= 0.6.5-8)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for python3-fast5
 Build-Ids: 0a12968c60c8ac1dc5b3571da681ce928c15290d 5f9dae055a193e555133fba36abc39dcd0b0ccaa

drwxr-xr-x root/root         0 2024-08-21 14:53 ./
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root   2501856 2024-08-21 14:53 ./usr/lib/debug/.build-id/0a/12968c60c8ac1dc5b3571da681ce928c15290d.debug
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root   2492688 2024-08-21 14:53 ./usr/lib/debug/.build-id/5f/9dae055a193e555133fba36abc39dcd0b0ccaa.debug
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root    243392 2024-08-21 14:53 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-fast5.debug
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-08-21 14:53 ./usr/share/doc/python3-fast5-dbgsym -> python3-fast5


python3-fast5_0.6.5-8_arm64.deb
-------------------------------

 new Debian package, version 2.0.
 size 282164 bytes: control archive=928 bytes.
     610 bytes,    16 lines      control
     659 bytes,     7 lines      md5sums
 Package: python3-fast5
 Source: fast5
 Version: 0.6.5-8
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1701
 Depends: libc6 (>= 2.17), libgcc-s1 (>= 3.0), libhdf5-103-1t64, libstdc++6 (>= 14), python3 (<< 3.14), python3 (>= 3.12~)
 Section: python
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/mateidavid/fast5
 Description: library for reading Oxford Nanopore Fast5 files -- Python 3
  A lightweight C++11 library to read raw signal data from Oxford
  Nanopore's FAST5 files.
  .
  This package provides the Python 3 library

drwxr-xr-x root/root         0 2024-08-21 14:53 ./
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/python3/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/
-rw-r--r-- root/root       239 2024-08-21 14:53 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2024-08-21 14:53 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt
-rw-r--r-- root/root         6 2024-08-21 14:53 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt
-rw-r--r-- root/root    861960 2024-08-21 14:53 ./usr/lib/python3/dist-packages/fast5.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root    861960 2024-08-21 14:53 ./usr/lib/python3/dist-packages/fast5.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-08-21 14:53 ./usr/share/doc/python3-fast5/
-rw-r--r-- root/root      1174 2024-08-21 14:53 ./usr/share/doc/python3-fast5/changelog.Debian.gz
-rw-r--r-- root/root      1440 2024-08-21 14:53 ./usr/share/doc/python3-fast5/copyright


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
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Reading package lists...
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Install lintian build dependencies (apt-based resolver)
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Installing build dependencies
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Building dependency tree...
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The following NEW packages will be installed:
  sbuild-build-depends-lintian-dummy
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(Reading database ... 43996 files and directories currently installed.)
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Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
W: fast5 changes: distribution-and-changes-mismatch sid unstable
W: fast5: no-manual-page [usr/bin/f5ls]
W: fast5: no-manual-page [usr/bin/f5pack]

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: binary
Build-Space: 73928
Build-Time: 111
Distribution: sid
Host Architecture: arm64
Install-Time: 42
Job: /tmp/debusine-fetch-exec-upload-5q86stl_/fast5_0.6.5-8.dsc
Lintian: warn
Machine Architecture: arm64
Package: fast5
Package-Time: 190
Source-Version: 0.6.5-8
Space: 73928
Status: successful
Version: 0.6.5-8
--------------------------------------------------------------------------------
Finished at 2024-10-24T06:40:59Z
Build needed 00:03:10, 73928k disk space

Relations

Relation Direction Type Name
relates-to Source package fast5_0.6.5-8
relates-to Binary package libpython3-all-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-all-dev_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-dev_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-stdlib_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all-dev_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all-venv_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all_3.12.6-1+debusine1_arm64
relates-to Binary package python3-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package python3-dev_3.12.6-1+debusine1_arm64
relates-to Binary package python3-full_3.12.6-1+debusine1_arm64
relates-to Binary package python3-minimal_3.12.6-1+debusine1_arm64
relates-to Binary package python3-nopie_3.12.6-1+debusine1_arm64
relates-to Binary package python3-venv_3.12.6-1+debusine1_arm64
relates-to Binary package python3_3.12.6-1+debusine1_arm64
relates-to Binary package 2to3_3.12.6-1+debusine1_all
relates-to Binary package idle_3.12.6-1+debusine1_all
relates-to Binary package python3-doc_3.12.6-1+debusine1_all
relates-to Binary package python3-examples_3.12.6-1+debusine1_all
relates-to Binary package python3-fast5-dbgsym_0.6.5-8_arm64
relates-to Binary package python3-fast5_0.6.5-8_arm64
relates-to Binary packages fast5_0.6.5-8
relates-to Binary package fast5_0.6.5-8_all
relates-to Binary package libfast5-dev_0.6.5-8_all
relates-to Binary packages fast5_0.6.5-8

build log System… build a package… - 1 month ago 1 day, 5 hours
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