sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-10.freexian.com
+==============================================================================+
| libedlib 1.2.7-6 (arm64) Thu, 24 Oct 2024 06:51:34 +0000 |
+==============================================================================+
Package: libedlib
Version: 1.2.7-6
Source Version: 1.2.7-6
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/872923/system.tar.xz to /tmp/tmp.sbuild.ryc6pnPs5e...
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Copying /tmp/debusine-fetch-exec-upload-9kv2dpsl/idle_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
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I: NOTICE: Log filtering will replace 'build/libedlib-Mc7VB6/resolver-czR6Fx' with '<<RESOLVERDIR>>'
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Reading package lists...
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:1 http://deb.debian.org/debian sid/main arm64 coreutils arm64 9.5-1 [2858 kB]
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Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3.1 [9256 B]
Get:8 http://deb.debian.org/debian sid/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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| Fetch source files |
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Local sources
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/tmp/debusine-fetch-exec-upload-9kv2dpsl/libedlib_1.2.7-6.dsc exists in /tmp/debusine-fetch-exec-upload-9kv2dpsl; copying to chroot
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 d-shlibs
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz
fakeroot g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libarchive13t64
libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4t64
libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp26 liblsan0 libmpc3
libmpfr6 libncursesw6 libnsl2 libproc2-0 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib librhash1 libstdc++-14-dev
libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libuv1t64
linux-libc-dev m4 media-types po-debconf procps python3 python3-all
python3-all-dev python3-autocommand python3-dev python3-inflect
python3-jaraco.context python3-jaraco.functools python3-minimal
python3-more-itertools python3-pkg-resources python3-setuptools
python3-typeguard python3-typing-extensions python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rename rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build cpp-doc gcc-14-locales cpp-14-doc cython-doc
dh-make flit python3-build python3-installer python3-wheel gcc-14-doc
gcc-multilib manpages-dev flex bison gdb gcc-doc gdb-aarch64-linux-gnu lrzip
libc-devtools glibc-doc libstdc++-14-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc python3-tk
python3-venv python-setuptools-doc python3.12-venv python3.12-doc
binfmt-support python3.13-venv python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 d-shlibs
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz
fakeroot g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libarchive13t64
libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4t64
libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0 libisl23 libitm1
libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp26 liblsan0 libmpc3
libmpfr6 libncursesw6 libnsl2 libproc2-0 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib librhash1 libstdc++-14-dev
libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libuv1t64
linux-libc-dev m4 media-types po-debconf procps python3 python3-all
python3-all-dev python3-autocommand python3-dev python3-inflect
python3-jaraco.context python3-jaraco.functools python3-minimal
python3-more-itertools python3-pkg-resources python3-setuptools
python3-typeguard python3-typing-extensions python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rename rpcsvc-proto sbuild-build-depends-main-dummy
zlib1g-dev
0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded.
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Get:29 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
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Get:37 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:41 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
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Get:45 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:53 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:57 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:58 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:59 http://deb.debian.org/debian sid/main arm64 cmake-data all 3.30.5-1 [2223 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 cmake arm64 3.30.5-1 [9403 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 cython3 arm64 3.0.11+dfsg-1 [2192 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 d-shlibs all 0.107 [11.0 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:73 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:83 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 rename all 2.02-1 [21.8 kB]
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 cmake_3.30.5-1 cmake-data_3.30.5-1 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1 d-shlibs_0.107 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libedlib
Binary: libedlib1, libedlib-dev, edlib-aligner, python3-edlib
Architecture: any
Version: 1.2.7-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/Martinsos/edlib
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/libedlib
Vcs-Git: https://salsa.debian.org/med-team/libedlib.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools
Package-List:
edlib-aligner deb science optional arch=any
libedlib-dev deb libdevel optional arch=any
libedlib1 deb libs optional arch=any
python3-edlib deb python optional arch=any
Checksums-Sha1:
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Files:
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Dgit: d93b8a9602cbc0d28f1532a96d2f358266020c8f debian archive/debian/1.2.7-6 https://git.dgit.debian.org/libedlib
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gpgv: Signature made Sat Jul 13 18:52:01 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libedlib_1.2.7-6.dsc: no acceptable signature found
dpkg-source: info: extracting libedlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libedlib_1.2.7.orig.tar.gz
dpkg-source: info: unpacking libedlib_1.2.7-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying cython3.patch
dpkg-source: info: applying enable_shared_and_static.patch
dpkg-source: info: applying really_exclude_readme.rst.patch
dpkg-source: info: applying fix-package-version.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package libedlib
dpkg-buildpackage: info: source version 1.2.7-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf meson-build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure --buildsystem=cmake -- -DCMAKE_BUILD_TYPE=Release -DEDLIB_BUILD_EXAMPLES=False -DBUILD_TESTING=False -DEDLIB_OMIT_README_RST=1 -DBUILD_SHARED_LIBS=ON
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DEDLIB_BUILD_EXAMPLES=False -DBUILD_TESTING=False -DEDLIB_OMIT_README_RST=1 -DBUILD_SHARED_LIBS=ON ..
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Setting warning flags
-- Performing Test WOLD_STYLE_CAST
-- Performing Test WOLD_STYLE_CAST - Success
-- Performing Test WSHADOW
-- Performing Test WSHADOW - Success
-- Configuring done (2.7s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
EDLIB_OMIT_README_RST
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --buildsystem=cmake
cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make -f CMakeFiles/edlib.dir/build.make CMakeFiles/edlib.dir/depend
make -f CMakeFiles/edlib_static.dir/build.make CMakeFiles/edlib_static.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles/edlib.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles/edlib_static.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make -f CMakeFiles/edlib.dir/build.make CMakeFiles/edlib.dir/build
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make -f CMakeFiles/edlib_static.dir/build.make CMakeFiles/edlib_static.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 33%] Building CXX object CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o
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/usr/bin/c++ -I/<<PKGBUILDDIR>>/edlib/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -MD -MT CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o -MF CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o.d -o CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o -c /<<PKGBUILDDIR>>/edlib/src/edlib.cpp
/usr/bin/c++ -DDLIB_BUILD -DEDLIB_SHARED -Dedlib_EXPORTS -I/<<PKGBUILDDIR>>/edlib/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o -c /<<PKGBUILDDIR>>/edlib/src/edlib.cpp
[ 50%] Linking CXX static library lib/libedlib_static.a
/usr/bin/cmake -P CMakeFiles/edlib_static.dir/cmake_clean_target.cmake
[ 66%] Linking CXX shared library lib/libedlib.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/edlib.dir/link.txt --verbose=1
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/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libedlib.so.1 -o lib/libedlib.so.1.2.7 CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o
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/usr/bin/cmake -E cmake_symlink_library lib/libedlib.so.1.2.7 lib/libedlib.so.1 lib/libedlib.so
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[100%] Built target edlib-aligner
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles 0
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
# /usr/bin/make --directory=bindings/python
EDLIB_OMIT_README_RST=1 /usr/bin/make --directory=bindings/python edlib pyedlib.bycython.cpp
make[2]: Entering directory '/<<PKGBUILDDIR>>/bindings/python'
# create a clean (maybe updated) copy of edlib src
rm -rf edlib && cp -r ../../edlib .
cython3 --cplus edlib.pyx -o edlib.bycython.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/bindings/python/edlib.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
make[2]: Leaving directory '/<<PKGBUILDDIR>>/bindings/python'
EDLIB_OMIT_README_RST=1 dh_auto_build --buildsystem=pybuild -- --dir bindings/python
I: pybuild base:311: /usr/bin/python3.13 setup.py build
running build
running build_ext
building 'edlib' extension
creating build
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/edlib
creating build/temp.linux-aarch64-cpython-313/edlib/src
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.13 -c edlib.bycython.cpp -o build/temp.linux-aarch64-cpython-313/edlib.bycython.o -O3 -std=c++11
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.13 -c edlib/src/edlib.cpp -o build/temp.linux-aarch64-cpython-313/edlib/src/edlib.o -O3 -std=c++11
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/edlib.bycython.o build/temp.linux-aarch64-cpython-313/edlib/src/edlib.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_edlib/build/edlib.cpython-313-aarch64-linux-gnu.so
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_ext
building 'edlib' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/edlib
creating build/temp.linux-aarch64-cpython-312/edlib/src
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.12 -c edlib.bycython.cpp -o build/temp.linux-aarch64-cpython-312/edlib.bycython.o -O3 -std=c++11
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.12 -c edlib/src/edlib.cpp -o build/temp.linux-aarch64-cpython-312/edlib/src/edlib.o -O3 -std=c++11
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/edlib.bycython.o build/temp.linux-aarch64-cpython-312/edlib/src/edlib.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_edlib/build/edlib.cpython-312-aarch64-linux-gnu.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
`find . -name edlib-aligner -type f -executable` -p apps/aligner/test_data/query.fasta apps/aligner/test_data/target.fasta
Using NW alignment mode.
Reading queries...
Read 1 queries, 110 residues total.
Reading target fasta file...
Read target, 109 residues.
Comparing queries to target...
Query #0 (110 residues): score = 17
T: MMEEERFAASADEIFHVTQEVC-RTASELTESESRNVIVDELFCVGVTEM (0 - 48)
||||||| | |||||||||| |||||||||||||||||||||||||||
Q: MMEEERFKA---EIFHVTQEVCNRTASELTESESRNVIVDELFCVGVTEM (0 - 46)
T: VAEQIRVLAKDIEA---HA-RKTVQPQDVLDDLCCRRNEGL-EIINNF-K (49 - 92)
| |||||||||||| || |||||||||| ||||||||| |||||| |
Q: VWEQIRVLAKDIEAFAEHAGRKTVQPQDVL--LCCRRNEGLYEIINNFHK (47 - 94)
T: AESIKSKKKKKE-STTB (93 - 108)
||||||||||| |||
Q: -ESIKSKKKKKENSTT- (94 - 109)
Cpu time of searching: 0.000127
`find . -name runTests`
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --buildsystem=cmake
cd obj-aarch64-linux-gnu && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/edlib-1.pc
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-targets-release.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1.2.7
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib_static.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/edlib.h
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
dh_auto_install --buildsystem=pybuild -- --dir bindings/python
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-edlib
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-edlib
creating /<<PKGBUILDDIR>>/debian/python3-edlib/usr
creating /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.13
creating /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.13/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_edlib/build/edlib.cpython-313-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.13/dist-packages
running install_egg_info
running egg_info
creating edlib.egg-info
writing edlib.egg-info/PKG-INFO
writing dependency_links to edlib.egg-info/dependency_links.txt
writing top-level names to edlib.egg-info/top_level.txt
writing manifest file 'edlib.egg-info/SOURCES.txt'
reading manifest file 'edlib.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'edlib.egg-info/SOURCES.txt'
Copying edlib.egg-info to /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.13/dist-packages/edlib-1.3.8.post2.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-edlib
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.12/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_edlib/build/edlib.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.12/dist-packages
running install_egg_info
running egg_info
writing edlib.egg-info/PKG-INFO
writing dependency_links to edlib.egg-info/dependency_links.txt
writing top-level names to edlib.egg-info/top_level.txt
reading manifest file 'edlib.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'edlib.egg-info/SOURCES.txt'
Copying edlib.egg-info to /<<PKGBUILDDIR>>/debian/python3-edlib/usr/lib/python3.12/dist-packages/edlib-1.3.8.post2.egg-info
Skipping SOURCES.txt
running install_scripts
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
file-rename 's/_static\.a/.a/' `find debian -name libedlib_static.a`
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/aarch64-linux-gnu \
--movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/aarch64-linux-gnu \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libedlib-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libedlib1/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.a debian/libedlib-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so debian/libedlib-dev/usr/lib/aarch64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1 debian/libedlib1/usr/lib/aarch64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1.2.7 debian/libedlib1/usr/lib/aarch64-linux-gnu
PKGDEV=libedlib-dev
PKGSHL=libedlib1
install -d -m 755 debian/libedlib-dev/usr/include
mv debian/tmp/usr/include/edlib.h debian/libedlib-dev/usr/include
install -d -m 755 debian/libedlib-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libedlib-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libedlib-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig debian/libedlib-dev/usr/lib/aarch64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_python3
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: debian/libedlib1/DEBIAN/symbols doesn't match completely debian/libedlib1.symbols
--- debian/libedlib1.symbols (libedlib1_1.2.7-6_arm64)
+++ dpkg-gensymbolsrNtMvL 2024-10-24 06:53:23.336000000 +0000
@@ -1,8 +1,8 @@
libedlib.so.1 libedlib1 #MINVER#
* Build-Depends-Package: libedlib-dev
- (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4
- (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4
- (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3
+#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4
+#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4
+#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3
edlibAlign@Base 1.2.3
edlibAlignmentToCigar@Base 1.2.3
edlibDefaultAlignConfig@Base 1.2.3
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package libedlib-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'python3-edlib-dbgsym' in '../python3-edlib-dbgsym_1.2.7-6_arm64.deb'.
dpkg-deb: building package 'edlib-aligner-dbgsym' in '../edlib-aligner-dbgsym_1.2.7-6_arm64.deb'.
dpkg-deb: building package 'libedlib-dev' in '../libedlib-dev_1.2.7-6_arm64.deb'.
dpkg-deb: building package 'libedlib1' in '../libedlib1_1.2.7-6_arm64.deb'.
dpkg-deb: building package 'libedlib1-dbgsym' in '../libedlib1-dbgsym_1.2.7-6_arm64.deb'.
dpkg-deb: building package 'python3-edlib' in '../python3-edlib_1.2.7-6_arm64.deb'.
dpkg-deb: building package 'edlib-aligner' in '../edlib-aligner_1.2.7-6_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../libedlib_1.2.7-6_arm64.buildinfo
dpkg-genchanges --build=binary -O../libedlib_1.2.7-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T06:53:25Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libedlib_1.2.7-6_arm64.changes:
-------------------------------
Format: 1.8
Date: Sat, 13 Jul 2024 20:49:11 +0200
Source: libedlib
Binary: edlib-aligner edlib-aligner-dbgsym libedlib-dev libedlib1 libedlib1-dbgsym python3-edlib python3-edlib-dbgsym
Architecture: arm64
Version: 1.2.7-6
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
edlib-aligner - edlib sequence alignment tool using edit distance
libedlib-dev - library for sequence alignment using edit distance (devel)
libedlib1 - library for sequence alignment using edit distance
python3-edlib - library for sequence alignment using edit distance (Python3 modul
Closes: 1015484 1075164
Changes:
libedlib (1.2.7-6) unstable; urgency=medium
.
* d/libedlib1.symbols: mark symbols leaked by the compiler as optional.
(Closes: #1015484, #1075164)
* d/rules: always run LTO builds.
* d/control: add myself to uploaders.
* d/control: declare compliance to standards version 4.7.0.
Checksums-Sha1:
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287ebd2da7d658e390003c3f27f2939034d0e5ed 22472 libedlib-dev_1.2.7-6_arm64.deb
62fb8e4cd61d21395a8951fcadc866b42bb74ee1 75952 libedlib1-dbgsym_1.2.7-6_arm64.deb
fc5514838c39b0157cd18e053f61c307e5fd33f3 17060 libedlib1_1.2.7-6_arm64.deb
711ca33f933449b28df41e7e72babed82bec884e 8910 libedlib_1.2.7-6_arm64.buildinfo
add5d812e9483ce67f830fa8f2e3fa85d2e3bed0 570816 python3-edlib-dbgsym_1.2.7-6_arm64.deb
0e34ddf929c012473fc843fc3a87ca6a3953cd86 84472 python3-edlib_1.2.7-6_arm64.deb
Checksums-Sha256:
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a3dcf9dbfeca4eabdc09bd35aff0f8a15908f2e38ab3f4731edfcdad628c07c5 23200 edlib-aligner_1.2.7-6_arm64.deb
d08f564c69c44c5e64383d3b98aaf6034f1912c785673aac4c1a45d9576ee625 22472 libedlib-dev_1.2.7-6_arm64.deb
eb28e66805d93c1c4cf236a97e3c45d4bb1ee27c936d9d33983a63151a4b005c 75952 libedlib1-dbgsym_1.2.7-6_arm64.deb
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Files:
1b5d23895616b166b45ba0ba3f330b81 112856 debug optional edlib-aligner-dbgsym_1.2.7-6_arm64.deb
0c77134b5fbaf12f13d1e9cf0ff987cf 23200 science optional edlib-aligner_1.2.7-6_arm64.deb
11c7b1c9596f7c2c4663d6a3323c145d 22472 libdevel optional libedlib-dev_1.2.7-6_arm64.deb
e750d672e48e749e8895d2beb66f12f8 75952 debug optional libedlib1-dbgsym_1.2.7-6_arm64.deb
75c20f797dc87ca82e7e7dda8d85bd2f 17060 libs optional libedlib1_1.2.7-6_arm64.deb
8832a5009bbe604eed11b4d2a268f836 8910 science optional libedlib_1.2.7-6_arm64.buildinfo
dd3c162abfbeda62fb349519db51f047 570816 debug optional python3-edlib-dbgsym_1.2.7-6_arm64.deb
1d33aaf7712dc26cceaea66a6161c0c4 84472 python optional python3-edlib_1.2.7-6_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libedlib
Binary: edlib-aligner edlib-aligner-dbgsym libedlib-dev libedlib1 libedlib1-dbgsym python3-edlib python3-edlib-dbgsym
Architecture: arm64
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 06:53:24 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
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cpp (= 4:14.2.0-1),
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m4 (= 1.4.19-4),
make (= 4.3-4.1),
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python3-all-dev (= 3.12.6-1+debusine1),
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python3-dev (= 3.12.6-1+debusine1),
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python3-typing-extensions (= 4.12.2-2),
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python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
readline-common (= 8.2-5),
rename (= 2.02-1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3),
tzdata (= 2024b-3),
util-linux (= 2.40.2-9),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1720896551"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
edlib-aligner-dbgsym_1.2.7-6_arm64.deb
--------------------------------------
new Debian package, version 2.0.
size 112856 bytes: control archive=544 bytes.
389 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: edlib-aligner-dbgsym
Source: libedlib
Version: 1.2.7-6
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 129
Depends: edlib-aligner (= 1.2.7-6)
Section: debug
Priority: optional
Description: debug symbols for edlib-aligner
Build-Ids: 16e5332c2a2b7dde59973c9757e3938117e2a4bd
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root 121744 2024-07-13 18:49 ./usr/lib/debug/.build-id/16/e5332c2a2b7dde59973c9757e3938117e2a4bd.debug
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-07-13 18:49 ./usr/share/doc/edlib-aligner-dbgsym -> edlib-aligner
edlib-aligner_1.2.7-6_arm64.deb
-------------------------------
new Debian package, version 2.0.
size 23200 bytes: control archive=1284 bytes.
1417 bytes, 31 lines control
545 bytes, 7 lines md5sums
Package: edlib-aligner
Source: libedlib
Version: 1.2.7-6
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 86
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2), libedlib1 (= 1.2.7-6)
Section: science
Priority: optional
Homepage: https://github.com/Martinsos/edlib
Description: edlib sequence alignment tool using edit distance
Edlib is a lightweight and super fast C/C++ library for sequence
alignment using edit distance. This package provides an aligner
using this library.
.
Features of libedlib
.
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/bin/
-rwxr-xr-x root/root 67688 2024-07-13 18:49 ./usr/bin/edlib-aligner
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/edlib-aligner/
-rw-r--r-- root/root 1343 2024-07-13 18:49 ./usr/share/doc/edlib-aligner/changelog.Debian.gz
-rw-r--r-- root/root 1399 2024-07-13 18:49 ./usr/share/doc/edlib-aligner/copyright
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/edlib-aligner/examples/
drwxr-xr-x root/root 0 2021-08-20 22:00 ./usr/share/doc/edlib-aligner/examples/test_data/
-rw-r--r-- root/root 112 2021-08-20 22:00 ./usr/share/doc/edlib-aligner/examples/test_data/query.fasta
-rw-r--r-- root/root 111 2021-08-20 22:00 ./usr/share/doc/edlib-aligner/examples/test_data/target.fasta
-rw-r--r-- root/root 334 2024-07-13 18:49 ./usr/share/doc/edlib-aligner/run-unit-test
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/man/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/man/man1/
-rw-r--r-- root/root 815 2024-07-13 18:49 ./usr/share/man/man1/edlib-aligner.1.gz
libedlib-dev_1.2.7-6_arm64.deb
------------------------------
new Debian package, version 2.0.
size 22472 bytes: control archive=1392 bytes.
1528 bytes, 37 lines control
740 bytes, 9 lines md5sums
Package: libedlib-dev
Source: libedlib
Version: 1.2.7-6
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 72
Depends: libedlib1 (= 1.2.7-6)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/Martinsos/edlib
Description: library for sequence alignment using edit distance (devel)
A lightweight and super fast C/C++ library for sequence alignment using
edit distance.
.
Calculating edit distance of two strings is as simple as:
.
edlibAlign("hello", 5, "world!", 6,
edlibDefaultAlignConfig()).editDistance;
Features
.
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/include/
-rw-r--r-- root/root 11041 2021-08-20 22:00 ./usr/include/edlib.h
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/cmake/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/cmake/edlib/
-rw-r--r-- root/root 1861 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-config-version.cmake
-rw-r--r-- root/root 1354 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-config.cmake
-rw-r--r-- root/root 1411 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-targets-release.cmake
-rw-r--r-- root/root 4842 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-targets.cmake
-rw-r--r-- root/root 32314 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/libedlib.a
lrwxrwxrwx root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/libedlib.so -> libedlib.so.1
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/pkgconfig/
-rw-r--r-- root/root 249 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/pkgconfig/edlib-1.pc
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/libedlib-dev/
-rw-r--r-- root/root 1338 2024-07-13 18:49 ./usr/share/doc/libedlib-dev/changelog.Debian.gz
-rw-r--r-- root/root 1399 2024-07-13 18:49 ./usr/share/doc/libedlib-dev/copyright
libedlib1-dbgsym_1.2.7-6_arm64.deb
----------------------------------
new Debian package, version 2.0.
size 75952 bytes: control archive=552 bytes.
393 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libedlib1-dbgsym
Source: libedlib
Version: 1.2.7-6
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 91
Depends: libedlib1 (= 1.2.7-6)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libedlib1
Build-Ids: 8c6c2f222e077b866b19d3019a3a489d993ffd1b
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/8c/
-rw-r--r-- root/root 82104 2024-07-13 18:49 ./usr/lib/debug/.build-id/8c/6c2f222e077b866b19d3019a3a489d993ffd1b.debug
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-07-13 18:49 ./usr/share/doc/libedlib1-dbgsym -> libedlib1
libedlib1_1.2.7-6_arm64.deb
---------------------------
new Debian package, version 2.0.
size 17060 bytes: control archive=1408 bytes.
1529 bytes, 37 lines control
224 bytes, 3 lines md5sums
32 bytes, 1 lines shlibs
229 bytes, 7 lines symbols
66 bytes, 2 lines triggers
Package: libedlib1
Source: libedlib
Version: 1.2.7-6
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 82
Depends: libc6 (>= 2.17), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/Martinsos/edlib
Description: library for sequence alignment using edit distance
A lightweight and super fast C/C++ library for sequence alignment using
edit distance.
.
Calculating edit distance of two strings is as simple as:
.
edlibAlign("hello", 5, "world!", 6,
edlibDefaultAlignConfig()).editDistance;
Features
.
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
.
This package contains the shared library.
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/
lrwxrwxrwx root/root 0 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/libedlib.so.1 -> libedlib.so.1.2.7
-rw-r--r-- root/root 67528 2024-07-13 18:49 ./usr/lib/aarch64-linux-gnu/libedlib.so.1.2.7
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/libedlib1/
-rw-r--r-- root/root 1338 2024-07-13 18:49 ./usr/share/doc/libedlib1/changelog.Debian.gz
-rw-r--r-- root/root 1399 2024-07-13 18:49 ./usr/share/doc/libedlib1/copyright
python3-edlib-dbgsym_1.2.7-6_arm64.deb
--------------------------------------
new Debian package, version 2.0.
size 570816 bytes: control archive=664 bytes.
447 bytes, 13 lines control
303 bytes, 3 lines md5sums
Package: python3-edlib-dbgsym
Source: libedlib
Version: 1.2.7-6
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 652
Depends: python3-edlib (= 1.2.7-6)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for python3-edlib
Build-Ids: 112ef1879d5cd9e954c8de262ac992e2673a86b5 233214ca3dddb34504d75b37172821f107c3872c
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/11/
-rw-r--r-- root/root 303472 2024-07-13 18:49 ./usr/lib/debug/.build-id/11/2ef1879d5cd9e954c8de262ac992e2673a86b5.debug
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.build-id/23/
-rw-r--r-- root/root 300568 2024-07-13 18:49 ./usr/lib/debug/.build-id/23/3214ca3dddb34504d75b37172821f107c3872c.debug
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root 49000 2024-07-13 18:49 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-edlib.debug
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-07-13 18:49 ./usr/share/doc/python3-edlib-dbgsym -> python3-edlib
python3-edlib_1.2.7-6_arm64.deb
-------------------------------
new Debian package, version 2.0.
size 84472 bytes: control archive=1412 bytes.
1592 bytes, 37 lines control
677 bytes, 7 lines md5sums
Package: python3-edlib
Source: libedlib
Version: 1.2.7-6
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 413
Depends: libc6 (>= 2.17), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2), python3 (<< 3.14), python3 (>= 3.12~)
Section: python
Priority: optional
Multi-Arch: same
Homepage: https://github.com/Martinsos/edlib
Description: library for sequence alignment using edit distance (Python3 module)
A lightweight and super fast C/C++ library for sequence alignment using
edit distance.
.
Calculating edit distance of two strings is as simple as:
.
edlibAlign("hello", 5, "world!", 6,
edlibDefaultAlignConfig()).editDistance;
Features
.
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
.
This package contains the Python3 module.
drwxr-xr-x root/root 0 2024-07-13 18:49 ./
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/python3/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/lib/python3/dist-packages/edlib-1.3.8.post2.egg-info/
-rw-r--r-- root/root 337 2024-07-13 18:49 ./usr/lib/python3/dist-packages/edlib-1.3.8.post2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2024-07-13 18:49 ./usr/lib/python3/dist-packages/edlib-1.3.8.post2.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2024-07-13 18:49 ./usr/lib/python3/dist-packages/edlib-1.3.8.post2.egg-info/top_level.txt
-rw-r--r-- root/root 202216 2024-07-13 18:49 ./usr/lib/python3/dist-packages/edlib.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 202216 2024-07-13 18:49 ./usr/lib/python3/dist-packages/edlib.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-13 18:49 ./usr/share/doc/python3-edlib/
-rw-r--r-- root/root 1338 2024-07-13 18:49 ./usr/share/doc/python3-edlib/changelog.Debian.gz
-rw-r--r-- root/root 1399 2024-07-13 18:49 ./usr/share/doc/python3-edlib/copyright
lintian
-------
Setup apt archive
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Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
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Install lintian build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
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(Reading database ... 29643 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
W: libedlib changes: distribution-and-changes-mismatch sid unstable
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 30248
Build-Time: 38
Distribution: sid
Host Architecture: arm64
Install-Time: 37
Job: /tmp/debusine-fetch-exec-upload-9kv2dpsl/libedlib_1.2.7-6.dsc
Lintian: warn
Machine Architecture: arm64
Package: libedlib
Package-Time: 111
Source-Version: 1.2.7-6
Space: 30248
Status: successful
Version: 1.2.7-6
--------------------------------------------------------------------------------
Finished at 2024-10-24T06:53:25Z
Build needed 00:01:51, 30248k disk space