sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-10.freexian.com
+==============================================================================+
| minimap2 2.27+dfsg-1+bd1 (arm64) Thu, 24 Oct 2024 07:05:45 +0000 |
+==============================================================================+
Package: minimap2
Version: 2.27+dfsg-1+bd1
Source Version: 2.27+dfsg-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3.1 [9256 B]
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Local sources
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/tmp/debusine-fetch-exec-upload-tb1thvze/minimap2_2.27+dfsg-1.dsc exists in /tmp/debusine-fetch-exec-upload-tb1thvze; copying to chroot
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), python3-setuptools, dh-sequence-python3, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot-nox | gnuplot, libsimde-dev, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), python3-setuptools, dh-sequence-python3, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot-nox, libsimde-dev, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
aglfn autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 d-shlibs debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
fonts-gfs-baskerville fonts-gfs-porson fonts-lmodern fonts-urw-base35 g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu ghostscript gnuplot-data
gnuplot-nox libabsl20230802 libaom3 libapache-pom-java libasan8
libavahi-client3 libavahi-common-data libavahi-common3 libavif16
libc-dev-bin libc6-dev libcairo2 libcc1-0 libcommons-logging-java
libcommons-parent-java libcrypt-dev libcups2t64 libdatrie1 libdav1d7
libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libedit2 libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libfribidi0
libgav1-1 libgcc-14-dev libgd3 libgraphite2-3 libgs-common libgs10
libgs10-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265
libheif1 libhwasan0 libice6 libidn12 libijs-0.35 libimagequant0 libisl23
libitm1 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc
libjs-underscore libkpathsea6 liblcms2-2 liblerc4 liblsan0 liblua5.4-0
libmpc3 libmpfi0 libmpfr6 libncursesw6 libnsl2 libopenjp2-7 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libpdfbox-java libpixman-1-0 libpng16-16t64 libpotrace0 libptexenc1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libraqm0
librav1e0.7 libsharpyuv0 libsimde-dev libsm6 libstdc++-14-dev libsvtav1enc2
libsynctex2 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6
libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libwebp7 libwebpmux3
libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxext6 libxi6 libxmu6 libxpm4 libxrender1 libxt6t64 libyuv0
libzzip-0-13t64 linux-libc-dev m4 media-types po-debconf poppler-data
preview-latex-style python3 python3-all python3-all-dev python3-autocommand
python3-dev python3-inflect python3-jaraco.context python3-jaraco.functools
python3-minimal python3-more-itertools python3-pkg-resources
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto tex-common texlive-base texlive-binaries
texlive-font-utils texlive-fonts-recommended texlive-lang-greek
texlive-latex-base texlive-latex-extra texlive-latex-recommended
texlive-pictures texlive-science x11-common xdg-utils xfonts-encodings
xfonts-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit python3-build python3-installer
python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre
gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu gnuplot-doc libc-devtools glibc-doc
libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java
cups-common libgd-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec
libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc
libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc
liblcms2-utils libmpfi-doc libstdc++-14-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc libmail-box-perl poppler-utils
fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
| fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv
python3.12-doc binfmt-support python3.13-venv python3.13-doc perl-tk xpdf
| pdf-viewer xzdec texlive-binaries-sse2 hintview lcdf-typetools psutils
texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex
python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc
texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
texlive-pictures-doc vprerex texlive-science-doc
Recommended packages:
fonts-liberation groff manpages manpages-dev dbus libarchive-cpio-perl
fonts-droid-fallback libheif-plugin-x265 libheif-plugin-aomenc
javascript-common libgpm2 libltdl-dev libmail-sendmail-perl lmodern dvisvgm
ps2eps tex-gyre tipa default-jre libspreadsheet-parseexcel-perl
texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
aglfn autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 d-shlibs debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
fonts-gfs-baskerville fonts-gfs-porson fonts-lmodern fonts-urw-base35 g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu ghostscript gnuplot-data
gnuplot-nox libabsl20230802 libaom3 libapache-pom-java libasan8
libavahi-client3 libavahi-common-data libavahi-common3 libavif16
libc-dev-bin libc6-dev libcairo2 libcc1-0 libcommons-logging-java
libcommons-parent-java libcrypt-dev libcups2t64 libdatrie1 libdav1d7
libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libedit2 libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libfribidi0
libgav1-1 libgcc-14-dev libgd3 libgraphite2-3 libgs-common libgs10
libgs10-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265
libheif1 libhwasan0 libice6 libidn12 libijs-0.35 libimagequant0 libisl23
libitm1 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc
libjs-underscore libkpathsea6 liblcms2-2 liblerc4 liblsan0 liblua5.4-0
libmpc3 libmpfi0 libmpfr6 libncursesw6 libnsl2 libopenjp2-7 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libpdfbox-java libpixman-1-0 libpng16-16t64 libpotrace0 libptexenc1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libraqm0
librav1e0.7 libsharpyuv0 libsimde-dev libsm6 libstdc++-14-dev libsvtav1enc2
libsynctex2 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6
libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1 libwebp7 libwebpmux3
libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxext6 libxi6 libxmu6 libxpm4 libxrender1 libxt6t64 libyuv0
libzzip-0-13t64 linux-libc-dev m4 media-types po-debconf poppler-data
preview-latex-style python3 python3-all python3-all-dev python3-autocommand
python3-dev python3-inflect python3-jaraco.context python3-jaraco.functools
python3-minimal python3-more-itertools python3-pkg-resources
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy tex-common
texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended
texlive-lang-greek texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures texlive-science x11-common
xdg-utils xfonts-encodings xfonts-utils zlib1g-dev
0 upgraded, 208 newly installed, 0 to remove and 0 not upgraded.
Need to get 308 MB/310 MB of archives.
After this operation, 968 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B]
Get:2 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 poppler-data all 0.4.12-1 [1601 kB]
Get:6 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:7 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:10 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:11 file:/<<BUILDDIR>>/resolver-ot8h7L/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:12 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:41 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:42 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:53 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:54 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:58 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:59 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:60 http://deb.debian.org/debian sid/main arm64 d-shlibs all 0.107 [11.0 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:66 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get:93 http://deb.debian.org/debian sid/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 fonts-gfs-baskerville all 1.1-6 [43.7 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 fonts-gfs-porson all 1.1-7 [33.8 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 fonts-lmodern all 2.005-1 [4540 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libgs-common all 10.04.0~dfsg-1 [148 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libgs10-common all 10.04.0~dfsg-1 [474 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libavahi-common-data arm64 0.8-13+b2 [112 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libavahi-common3 arm64 0.8-13+b2 [42.4 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libdbus-1-3 arm64 1.14.10-4+b1 [195 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libavahi-client3 arm64 0.8-13+b2 [45.7 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libcups2t64 arm64 2.4.10-2 [235 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libidn12 arm64 1.42-2 [79.2 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 libijs-0.35 arm64 0.35-15.1+b1 [14.9 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 libjbig2dec0 arm64 0.20-1+b2 [59.6 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libpaper1 arm64 1.1.29+b1 [12.9 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2 [143 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.7-1 [328 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libgs10 arm64 10.04.0~dfsg-1 [2351 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 ghostscript arm64 10.04.0~dfsg-1 [50.5 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 gnuplot-data all 6.0.0+dfsg1-3 [72.3 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libxcb-render0 arm64 1.17.0-2 [115 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libaom3 arm64 3.10.0-1 [1653 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libdav1d7 arm64 1.5.0-1 [248 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 libgav1-1 arm64 0.19.0-2+b1 [481 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 librav1e0.7 arm64 0.7.1-7+b2 [653 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 libsvtav1enc2 arm64 2.2.1+dfsg-2 [1463 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libyuv0 arm64 0.0.1888.20240710-3 [130 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 libavif16 arm64 1.1.1-1 [109 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 libheif-plugin-dav1d arm64 1.18.2-2 [10.9 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 libheif-plugin-libde265 arm64 1.18.2-2 [14.1 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 libheif1 arm64 1.18.2-2 [272 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB]
Get:150 http://deb.debian.org/debian sid/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB]
Get:153 http://deb.debian.org/debian sid/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 libgd3 arm64 2.3.3-12 [114 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 liblua5.4-0 arm64 5.4.6-3+b1 [135 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 libthai-data all 0.1.29-2 [168 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 libdatrie1 arm64 0.2.13-3 [37.2 kB]
Get:159 http://deb.debian.org/debian sid/main arm64 libthai0 arm64 0.1.29-2 [48.0 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 gnuplot-nox arm64 6.0.0+dfsg1-3 [837 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 libapache-pom-java all 33-2 [5852 B]
Get:166 http://deb.debian.org/debian sid/main arm64 libcommons-parent-java all 56-1 [10.8 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:169 http://deb.debian.org/debian sid/main arm64 libfontbox-java all 1:1.8.16-5 [211 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-4 [153 kB]
Get:174 http://deb.debian.org/debian sid/main arm64 libmpfi0 arm64 1.5.4+ds-3 [34.1 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 libpaper-utils arm64 1.1.29+b1 [9068 B]
Get:176 http://deb.debian.org/debian sid/main arm64 libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get:177 http://deb.debian.org/debian sid/main arm64 libpotrace0 arm64 1.16-2+b1 [23.1 kB]
Get:178 http://deb.debian.org/debian sid/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-4 [47.9 kB]
Get:179 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:180 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:181 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:182 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:183 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:184 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:185 http://deb.debian.org/debian sid/main arm64 libsimde-dev all 0.8.2-1 [465 kB]
Get:186 http://deb.debian.org/debian sid/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-4 [60.2 kB]
Get:187 http://deb.debian.org/debian sid/main arm64 libteckit0 arm64 2.5.12+ds1-1 [300 kB]
Get:188 http://deb.debian.org/debian sid/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-4 [106 kB]
Get:189 http://deb.debian.org/debian sid/main arm64 libxmu6 arm64 2:1.1.3-3+b2 [55.5 kB]
Get:190 http://deb.debian.org/debian sid/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB]
Get:191 http://deb.debian.org/debian sid/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB]
Get:192 http://deb.debian.org/debian sid/main arm64 libzzip-0-13t64 arm64 0.13.72+dfsg.1-1.3 [56.6 kB]
Get:193 http://deb.debian.org/debian sid/main arm64 tex-common all 6.18 [32.5 kB]
Get:194 http://deb.debian.org/debian sid/main arm64 preview-latex-style all 13.2-1 [350 kB]
Get:195 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:196 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:197 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:198 http://deb.debian.org/debian sid/main arm64 texlive-binaries arm64 2024.20240313.70630+ds-4 [7373 kB]
Get:199 http://deb.debian.org/debian sid/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:200 http://deb.debian.org/debian sid/main arm64 texlive-base all 2024.20240829-2 [22.7 MB]
Get:201 http://deb.debian.org/debian sid/main arm64 texlive-font-utils all 2024.20240829-1 [6982 kB]
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Get:203 http://deb.debian.org/debian sid/main arm64 texlive-lang-greek all 2024.20240829-1 [79.2 MB]
Get:204 http://deb.debian.org/debian sid/main arm64 texlive-latex-base all 2024.20240829-2 [1273 kB]
Get:205 http://deb.debian.org/debian sid/main arm64 texlive-latex-recommended all 2024.20240829-2 [8845 kB]
Get:206 http://deb.debian.org/debian sid/main arm64 texlive-pictures all 2024.20240829-2 [17.0 MB]
Get:207 http://deb.debian.org/debian sid/main arm64 texlive-latex-extra all 2024.20240829-1 [20.9 MB]
Get:208 http://deb.debian.org/debian sid/main arm64 texlive-science all 2024.20240829-1 [3848 kB]
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Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:arm64 (1.0.15-1) ...
Setting up libtexlua53-5:arm64 (2024.20240313.70630+ds-4) ...
Setting up libimagequant0:arm64 (2.18.0-1+b1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:arm64 (1.6.44-2) ...
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Setting up libsm6:arm64 (2:1.2.3-1+b1) ...
Setting up libavahi-client3:arm64 (0.8-13+b2) ...
Setting up fontconfig (2.15.0-1.1) ...
Regenerating fonts cache... done.
Setting up libavif16:arm64 (1.1.1-1) ...
Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ...
Setting up libxi6:arm64 (2:1.8.2-1) ...
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Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up libcairo2:arm64 (1.18.2-2) ...
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Setting up cpp (4:14.2.0-1) ...
Setting up gcc-14-aarch64-linux-gnu (14.2.0-7) ...
Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ...
Setting up libcups2t64:arm64 (2.4.10-2) ...
Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ...
Setting up libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
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Setting up python3 (3.12.6-1+debusine1) ...
Setting up libpython3.12-dev:arm64 (3.12.7-1) ...
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Setting up cython3 (3.0.11+dfsg-1+debusine1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up texlive-binaries (2024.20240313.70630+ds-4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-7) ...
Setting up texlive-base (2024.20240829-2) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up python3-more-itertools (10.5.0-1) ...
Setting up libgs10-common (10.04.0~dfsg-1) ...
Setting up libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3.13-dev (3.13.0-1) ...
Setting up python3-typeguard (4.3.0-1) ...
Setting up python3-all (3.12.6-1+debusine1) ...
Setting up texlive-lang-greek (2024.20240829-1) ...
Setting up texlive-font-utils (2024.20240829-1) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up texlive-latex-base (2024.20240829-2) ...
Setting up libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-dev (3.12.6-1+debusine1) ...
Setting up texlive-latex-recommended (2024.20240829-2) ...
Setting up texlive-pictures (2024.20240829-2) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up texlive-fonts-recommended (2024.20240829-2) ...
Setting up build-essential (12.12) ...
Setting up libgs10:arm64 (10.04.0~dfsg-1) ...
Setting up python3-pkg-resources (74.1.2-2) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (74.1.2-2) ...
Setting up texlive-science (2024.20240829-1) ...
Setting up debhelper (13.20) ...
Setting up texlive-latex-extra (2024.20240829-1) ...
Setting up ghostscript (10.04.0~dfsg-1) ...
Setting up dh-python (6.20240824) ...
Setting up libheif-plugin-dav1d:arm64 (1.18.2-2) ...
Setting up libheif-plugin-libde265:arm64 (1.18.2-2) ...
Setting up libheif1:arm64 (1.18.2-2) ...
Setting up libgd3:arm64 (2.3.3-12) ...
Setting up gnuplot-nox (6.0.0+dfsg1-3) ...
update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: aglfn_1.7+git20191031.4036a9c-2 appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 d-shlibs_0.107 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 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libparams-classify-perl_0.015-2+b4 libparams-util-perl_1.102-3+b1 libpath-tiny-perl_0.146-1 libpcre2-8-0_10.42-4+b1 libpdfbox-java_1:1.8.16-5 libperl5.40_5.40.0-6 libperlio-gzip-perl_0.20-1+b4 libperlio-utf8-strict-perl_0.010-1+b3 libpipeline1_1.5.8-1 libpixman-1-0_0.42.2-1+b1 libpng16-16t64_1.6.44-2 libpotrace0_1.16-2+b1 libproc-processtable-perl_0.636-1+b3 libpsl5t64_0.21.2-1.1 libptexenc1_2024.20240313.70630+ds-4 libpython3-all-dev_3.12.6-1+debusine1 libpython3-dev_3.12.6-1+debusine1 libpython3-stdlib_3.12.6-1+debusine1 libpython3.12-dev_3.12.7-1 libpython3.12-minimal_3.12.7-1 libpython3.12-stdlib_3.12.7-1 libpython3.12t64_3.12.7-1 libpython3.13_3.13.0-1 libpython3.13-dev_3.13.0-1 libpython3.13-minimal_3.13.0-1 libpython3.13-stdlib_3.13.0-1 libraqm0_0.10.1-1+b1 librav1e0.7_0.7.1-7+b2 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b3 libsereal-encoder-perl_5.004+ds-1+b3 libsframe1_2.43.1-5 libsharpyuv0_1.4.0-0.1 libsimde-dev_0.8.2-1 libsm6_2:1.2.3-1+b1 libsmartcols1_2.40.2-9 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 libstemmer0d_2.2.0-4+b1 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b3 libsub-quote-perl_2.006008-1 libsvtav1enc2_2.2.1+dfsg-2 libsynctex2_2024.20240313.70630+ds-4 libsyntax-keyword-try-perl_0.30-1+b1 libsystemd0_256.7-2 libtasn1-6_4.19.0-3+b2 libteckit0_2.5.12+ds1-1 libterm-readkey-perl_2.38-2+b4 libtexlua53-5_2024.20240313.70630+ds-4 libtext-glob-perl_0.11-3 libtext-levenshteinxs-perl_0.03-5+b4 libtext-markdown-discount-perl_0.16-1+b3 libtext-xslate-perl_3.5.9-2+b1 libthai-data_0.1.29-2 libthai0_0.1.29-2 libtiff6_4.5.1+git230720-5 libtime-duration-perl_1.21-2 libtime-moment-perl_0.44-2+b4 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtool_2.4.7-7 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-7 libubsan1_14.2.0-7 libuchardet0_0.0.8-1+b1 libudev1_256.7-2 libunicode-utf8-perl_0.62-2+b3 libunistring5_1.2-1 liburi-perl_5.30-1 libuuid1_2.40.2-9 libvariable-magic-perl_0.64-1+b1 libwebp7_1.4.0-0.1 libwebpmux3_1.4.0-0.1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.8.7-1+b1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1+b1 libxaw7_2:1.0.14-1+b2 libxcb-render0_1.17.0-2 libxcb-shm0_1.17.0-2 libxcb1_1.17.0-2 libxdmcp6_1:1.1.2-3+b1 libxext6_2:1.3.4-1+b2 libxi6_2:1.8.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxmlb2_0.3.21-1 libxmu6_2:1.1.3-3+b2 libxpm4_1:3.5.17-1+b1 libxrender1_1:0.9.10-1.1+b1 libxs-parse-keyword-perl_0.46-1+b1 libxt6t64_1:1.2.1-1.2 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-2+b1 libyuv0_0.0.1888.20240710-3 libzstd1_1.5.6+dfsg-1 libzzip-0-13t64_0.13.72+dfsg.1-1.3 lintian_2.119.0 linux-libc-dev_6.11.4-1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-9 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 poppler-data_0.4.12-1 preview-latex-style_13.2-1 python3_3.12.6-1+debusine1 python3-all_3.12.6-1+debusine1 python3-all-dev_3.12.6-1+debusine1 python3-autocommand_2.2.2-3 python3-dev_3.12.6-1+debusine1 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-pkg-resources_74.1.2-2 python3-setuptools_74.1.2-2 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.13_3.13.0-1 python3.13-dev_3.13.0-1 python3.13-minimal_3.13.0-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4 tar_1.35+dfsg-3 tex-common_6.18 texlive-base_2024.20240829-2 texlive-binaries_2024.20240313.70630+ds-4 texlive-font-utils_2024.20240829-1 texlive-fonts-recommended_2024.20240829-2 texlive-lang-greek_2024.20240829-1 texlive-latex-base_2024.20240829-2 texlive-latex-extra_2024.20240829-1 texlive-latex-recommended_2024.20240829-2 texlive-pictures_2024.20240829-2 texlive-science_2024.20240829-1 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-9 x11-common_1:7.7+23.1 xdg-utils_1.1.3-4.1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: minimap2
Binary: minimap2, libminimap2-dev, python3-mappy
Architecture: any
Version: 2.27+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/lh3/minimap2
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/minimap2
Vcs-Git: https://salsa.debian.org/med-team/minimap2.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all
Build-Depends: debhelper-compat (= 13), python3-setuptools, dh-sequence-python3, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot-nox | gnuplot, libsimde-dev
Package-List:
libminimap2-dev deb libdevel optional arch=any
minimap2 deb science optional arch=any
python3-mappy deb python optional arch=any
Checksums-Sha1:
5b1fc195a089c03049c1da7e1130fbeea929c3b3 200448 minimap2_2.27+dfsg.orig.tar.xz
a7aa130e9464843d8736dc295f5628441895c4e7 11544 minimap2_2.27+dfsg-1.debian.tar.xz
Checksums-Sha256:
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45d509d32766d87c4ca3c8ed7310e2758794418e0c53918fda09f45f8cac5826 11544 minimap2_2.27+dfsg-1.debian.tar.xz
Files:
2f98c85235a8086e03367622ae70aef0 200448 minimap2_2.27+dfsg.orig.tar.xz
2b0538bcbffb92d0d127c6a47728340b 11544 minimap2_2.27+dfsg-1.debian.tar.xz
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gpgv: Signature made Mon Mar 18 16:37:53 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./minimap2_2.27+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting minimap2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking minimap2_2.27+dfsg.orig.tar.xz
dpkg-source: info: unpacking minimap2_2.27+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying do_not_use_natbib.bst.patch
dpkg-source: info: applying ar.patch
dpkg-source: info: applying link_mappy_to_libminimap.patch
dpkg-source: info: applying python-sse4-arch.patch
dpkg-source: info: applying simde
dpkg-source: info: applying reenable-simde.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.27+dfsg-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package minimap2
dpkg-buildpackage: info: source version 2.27+dfsg-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -fr gmon.out *.o a.out minimap2 sdust minimap2-lite *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg*
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_clean --buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
cd tex && make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/tex'
rm -fr *.toc *.aux *.bbl *.blg *.idx *.log *.out *~ minimap2.pdf
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tex'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- -f Makefile.simde
make -j4 "INSTALL=install --strip-program=true" -f Makefile.simde
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 main.c -o main.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 kthread.c -o kthread.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 kalloc.c -o kalloc.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 misc.c -o misc.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 bseq.c -o bseq.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 sketch.c -o sketch.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 sdust.c -o sdust.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 options.c -o options.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 index.c -o index.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 lchain.c -o lchain.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 align.c -o align.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 hit.c -o hit.o
index.c: In function ‘mm_idx_load’:
index.c:520:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
520 | fread(&l, 1, 1, fp);
| ^~~~~~~~~~~~~~~~~~~
index.c:523:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
523 | fread(s->name, 1, l, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:526:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
526 | fread(&s->len, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:536:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
536 | fread(&b->n, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:538:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fread(b->p, 8, b->n, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:539:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
539 | fread(&size, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:546:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
546 | fread(x, 8, 2, fp);
| ^~~~~~~~~~~~~~~~~~
index.c:554:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fread(mi->S, 4, (sum_len + 7) / 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 seed.c -o seed.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 map.c -o map.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 format.c -o format.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 pe.c -o pe.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 esterr.c -o esterr.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 splitidx.c -o splitidx.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 ksw2_ll_sse.c -o ksw2_ll_sse.o
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 -DKSW_SSE2_ONLY -D__SSE2__ ksw2_extz2_sse.c -o ksw2_extz2.o
ksw2_extz2_sse.c:5:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
5 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 -DKSW_SSE2_ONLY -D__SSE2__ ksw2_extd2_sse.c -o ksw2_extd2.o
ksw2_extd2_sse.c:6:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
6 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 -DKSW_SSE2_ONLY -D__SSE2__ ksw2_exts2_sse.c -o ksw2_exts2.o
ksw2_exts2_sse.c:6:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
6 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
rm -f libminimap2.a
ar csrD libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o lchain.o align.o hit.o seed.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2.o ksw2_extd2.o ksw2_exts2.o
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
cd tex && make
make[2]: Entering directory '/<<PKGBUILDDIR>>/tex'
gnuplot roc.gp
epstopdf --outfile roc-color.pdf roc-color.eps
Fontconfig error: No writable cache directories
Fontconfig error: No writable cache directories
pdflatex minimap2; bibtex minimap2; pdflatex minimap2; pdflatex minimap2;
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\OT1/phv/b/n/8 Results: \OT1/phv/m/n/8 Minimap2 is a general-purpose alignment
program to
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\OT1/ptm/m/n/9 minor modifications could enable the base algorithm to map
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\OT1/ptm/m/n/9 mRNAs as well. Minimap2 becomes a first RNA-seq aligner
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\OT1/ptm/m/n/8 performs local alignment between the two subsequences involved i
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[]\OT1/ptm/m/n/9 2016[]), Kart (v2.2.5; []Lin and Hsu[], []2017[]), minialign (
v0.5.3;
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dlazeck
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\OT1/ptm/m/n/9 GMAP (v2017-06-20; []Wu and Watanabe[], []2005[]), minimap2,
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\OT1/ptm/m/n/9 et al.[], []2013[]). In general, minimap2 is more consistent wit
h
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\OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2
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\OT1/ptm/m/n/9 v3.5 ([]Depristo et al.[], []2011[]). This run was sequenced fro
m
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[]\OT1/ptm/m/n/9 The capability of minimap2 comes from a fast base-level
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\OT1/ptm/m/n/9 releasing their masterpiece and insightful notes before formal
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[]\OT1/ptm/m/n/7 Li, H. et al. (2009). The Sequence Alignment/Map format and S
AMtools.
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Output written on minimap2.pdf (6 pages, 270203 bytes).
Transcript written on minimap2.log.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tex'
dh_auto_build --buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_ext
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/python/mappy.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
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[1/1] Cythonizing python/mappy.pyx
building 'mappy' extension
creating build
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/python
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c align.c -o build/temp.linux-aarch64-cpython-313/align.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
align.c: In function ‘mm_get_hplen_back’:
align.c:365:43: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
365 | if (mm_seq4_get(mi->S, i) != c) break;
| ^~
align.c: In function ‘mm_seed_ext_score’:
align.c:552:56: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
552 | re = re + ext_len < (int32_t)mi->seq[rid].len? re + ext_len : mi->seq[rid].len;
| ^~~~~~~~~~~~
align.c: In function ‘mm_align1’:
align.c:646:59: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
646 | re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len;
| ^~~~~~
align.c:698:65: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
698 | l = l < (int32_t)mi->seq[rid].len - re? l : mi->seq[rid].len - re;
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c bseq.c -o build/temp.linux-aarch64-cpython-313/bseq.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c esterr.c -o build/temp.linux-aarch64-cpython-313/esterr.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c format.c -o build/temp.linux-aarch64-cpython-313/format.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c hit.c -o build/temp.linux-aarch64-cpython-313/hit.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
hit.c: In function ‘mm_hit_sort’:
hit.c:190:55: warning: variable ‘no_cigar’ set but not used [-Wunused-but-set-variable]
190 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
| ^~~~~~~~
hit.c:190:40: warning: variable ‘has_cigar’ set but not used [-Wunused-but-set-variable]
190 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
| ^~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c index.c -o build/temp.linux-aarch64-cpython-313/index.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
index.c: In function ‘mm_idx_name2id’:
index.c:149:32: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
149 | return k == kh_end(h)? -1 : kh_val(h, k);
| ^~
index.c: In function ‘mm_idx_gen’:
index.c:382:70: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
382 | pl.mini_batch_size = (uint64_t)mini_batch_size < batch_size? mini_batch_size : batch_size;
| ^~~~~~~~~~~~~~~
index.c: In function ‘mm_idx_dump’:
index.c:483:23: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
483 | for (i = 0; i < 1<<mi->b; ++i) {
| ^
index.c: In function ‘mm_idx_load’:
index.c:531:23: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
531 | for (i = 0; i < 1<<mi->b; ++i) {
| ^
index.c: In function ‘mm_idx_bed_read’:
index.c:748:23: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
748 | for (i = 0; i < mi->n_seq; ++i) // TODO: eliminate redundant intervals
| ^
index.c: In function ‘mm_idx_bed_junc’:
index.c:758:42: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
758 | if (mi->I == 0 || ctg < 0 || ctg >= mi->n_seq) return -1;
| ^~
index.c: In function ‘mm_idx_load’:
index.c:520:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
520 | fread(&l, 1, 1, fp);
| ^~~~~~~~~~~~~~~~~~~
index.c:523:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
523 | fread(s->name, 1, l, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:526:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
526 | fread(&s->len, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:536:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
536 | fread(&b->n, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:538:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fread(b->p, 8, b->n, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:539:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
539 | fread(&size, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:546:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
546 | fread(x, 8, 2, fp);
| ^~~~~~~~~~~~~~~~~~
index.c:554:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fread(mi->S, 4, (sum_len + 7) / 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c kalloc.c -o build/temp.linux-aarch64-cpython-313/kalloc.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c ksw2_extd2_sse.c -o build/temp.linux-aarch64-cpython-313/ksw2_extd2_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_extd2_sse.c:6:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
6 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c ksw2_exts2_sse.c -o build/temp.linux-aarch64-cpython-313/ksw2_exts2_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_exts2_sse.c:6:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
6 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c ksw2_extz2_sse.c -o build/temp.linux-aarch64-cpython-313/ksw2_extz2_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_extz2_sse.c:5:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
5 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c ksw2_ll_sse.c -o build/temp.linux-aarch64-cpython-313/ksw2_ll_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c kthread.c -o build/temp.linux-aarch64-cpython-313/kthread.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c lchain.c -o build/temp.linux-aarch64-cpython-313/lchain.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
lchain.c: In function ‘mg_chain_bk_end’:
lchain.c:18:37: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
18 | s = i < 0? z[k].x : (int32_t)z[k].x - f[i];
| ^~~~~~~~~~~~~~~~~~~~~~
lchain.c: In function ‘mg_chain_backtrack’:
lchain.c:51:46: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
51 | sc = i < 0? z[k].x : (int32_t)z[k].x - f[i];
| ^~~~~~~~~~~~~~~~~~~~~~
lchain.c:66:46: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
66 | sc = i < 0? z[k].x : (int32_t)z[k].x - f[i];
| ^~~~~~~~~~~~~~~~~~~~~~
lchain.c: In function ‘mg_lchain_dp’:
lchain.c:190:56: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
190 | if (max_ii < 0 || a[i].x - a[max_ii].x > (int64_t)max_dist_x) {
| ^
lchain.c:204:57: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
204 | if (max_ii < 0 || (a[i].x - a[max_ii].x <= (int64_t)max_dist_x && f[max_ii] < f[i]))
| ^~
lchain.c: In function ‘mg_lchain_rmq’:
lchain.c:295:117: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
295 | while (st < i && (a[i].x>>32 != a[st].x>>32 || a[i].x > a[st].x + max_dist || krmq_size(head, root) > cap_rmq_size)) {
| ^
lchain.c:304:155: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
304 | while (st_inner < i && (a[i].x>>32 != a[st_inner].x>>32 || a[i].x > a[st_inner].x + max_dist_inner || krmq_size(head, root_inner) > cap_rmq_size)) {
| ^
lchain.c:356:34: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
356 | if (max_rmq_size < krmq_size(head, root)) max_rmq_size = krmq_size(head, root);
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c map.c -o build/temp.linux-aarch64-cpython-313/map.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
map.c: In function ‘mm_dust_minier’:
map.c:48:70: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
48 | int ss = s > (int32_t)(dreg[v]>>32)? s : dreg[v]>>32;
| ^
map.c:49:64: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
49 | int ee = e < (int32_t)dreg[v]? e : (uint32_t)dreg[v];
| ^
map.c: In function ‘mm_map_frag’:
map.c:367:84: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
367 | if (kmst.largest > 1U<<28 || (opt->cap_kalloc > 0 && kmst.capacity > opt->cap_kalloc)) {
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c misc.c -o build/temp.linux-aarch64-cpython-313/misc.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c options.c -o build/temp.linux-aarch64-cpython-313/options.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c pe.c -o build/temp.linux-aarch64-cpython-313/pe.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c python/mappy.c -o build/temp.linux-aarch64-cpython-313/python/mappy.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c sdust.c -o build/temp.linux-aarch64-cpython-313/sdust.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c seed.c -o build/temp.linux-aarch64-cpython-313/seed.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
seed.c: In function ‘mm_seed_mz_flt’:
seed.c:9:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
9 | if (mv->n <= q_occ_max || q_occ_frac <= 0.0f || q_occ_max <= 0) return;
| ^~
seed.c: In function ‘mm_seed_select’:
seed.c:65:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
65 | if (a[i].n > max_occ) ++m;
| ^
seed.c:68:38: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
68 | if (i == n || a[i].n <= max_occ) {
| ^~
seed.c:71:54: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
71 | int32_t pe = i == n? len : (uint32_t)a[i].q_pos>>1;
| ^~~
seed.c:81:60: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
81 | if (a[j].n < (int32_t)(b[0]>>32)) { // then update the heap
| ^
seed.c:90:52: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
90 | if (a[j].n > max_max_occ)
| ^
seed.c: In function ‘mm_collect_matches’:
seed.c:109:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
109 | for (i = 0; i < n_m0; ++i)
| ^
seed.c:110:36: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
110 | if (m[i].n > max_occ)
| ^
seed.c:113:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
113 | for (i = 0, n_m = 0, *rep_len = 0, *n_a = 0; i < n_m0; ++i) {
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c sketch.c -o build/temp.linux-aarch64-cpython-313/sketch.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.13 -c splitidx.c -o build/temp.linux-aarch64-cpython-313/splitidx.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/align.o build/temp.linux-aarch64-cpython-313/bseq.o build/temp.linux-aarch64-cpython-313/esterr.o build/temp.linux-aarch64-cpython-313/format.o build/temp.linux-aarch64-cpython-313/hit.o build/temp.linux-aarch64-cpython-313/index.o build/temp.linux-aarch64-cpython-313/kalloc.o build/temp.linux-aarch64-cpython-313/ksw2_extd2_sse.o build/temp.linux-aarch64-cpython-313/ksw2_exts2_sse.o build/temp.linux-aarch64-cpython-313/ksw2_extz2_sse.o build/temp.linux-aarch64-cpython-313/ksw2_ll_sse.o build/temp.linux-aarch64-cpython-313/kthread.o build/temp.linux-aarch64-cpython-313/lchain.o build/temp.linux-aarch64-cpython-313/map.o build/temp.linux-aarch64-cpython-313/misc.o build/temp.linux-aarch64-cpython-313/options.o build/temp.linux-aarch64-cpython-313/pe.o build/temp.linux-aarch64-cpython-313/python/mappy.o build/temp.linux-aarch64-cpython-313/sdust.o build/temp.linux-aarch64-cpython-313/seed.o build/temp.linux-aarch64-cpython-313/sketch.o build/temp.linux-aarch64-cpython-313/splitidx.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/mappy.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting python/minimap2.py -> build/scripts-3.13
changing mode of build/scripts-3.13/minimap2.py from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_ext
building 'mappy' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/python
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c align.c -o build/temp.linux-aarch64-cpython-312/align.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
align.c: In function ‘mm_get_hplen_back’:
align.c:365:43: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
365 | if (mm_seq4_get(mi->S, i) != c) break;
| ^~
align.c: In function ‘mm_seed_ext_score’:
align.c:552:56: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
552 | re = re + ext_len < (int32_t)mi->seq[rid].len? re + ext_len : mi->seq[rid].len;
| ^~~~~~~~~~~~
align.c: In function ‘mm_align1’:
align.c:646:59: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
646 | re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len;
| ^~~~~~
align.c:698:65: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
698 | l = l < (int32_t)mi->seq[rid].len - re? l : mi->seq[rid].len - re;
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c bseq.c -o build/temp.linux-aarch64-cpython-312/bseq.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c esterr.c -o build/temp.linux-aarch64-cpython-312/esterr.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c format.c -o build/temp.linux-aarch64-cpython-312/format.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c hit.c -o build/temp.linux-aarch64-cpython-312/hit.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
hit.c: In function ‘mm_hit_sort’:
hit.c:190:55: warning: variable ‘no_cigar’ set but not used [-Wunused-but-set-variable]
190 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
| ^~~~~~~~
hit.c:190:40: warning: variable ‘has_cigar’ set but not used [-Wunused-but-set-variable]
190 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
| ^~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c index.c -o build/temp.linux-aarch64-cpython-312/index.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
index.c: In function ‘mm_idx_name2id’:
index.c:149:32: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
149 | return k == kh_end(h)? -1 : kh_val(h, k);
| ^~
index.c: In function ‘mm_idx_gen’:
index.c:382:70: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
382 | pl.mini_batch_size = (uint64_t)mini_batch_size < batch_size? mini_batch_size : batch_size;
| ^~~~~~~~~~~~~~~
index.c: In function ‘mm_idx_dump’:
index.c:483:23: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
483 | for (i = 0; i < 1<<mi->b; ++i) {
| ^
index.c: In function ‘mm_idx_load’:
index.c:531:23: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
531 | for (i = 0; i < 1<<mi->b; ++i) {
| ^
index.c: In function ‘mm_idx_bed_read’:
index.c:748:23: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
748 | for (i = 0; i < mi->n_seq; ++i) // TODO: eliminate redundant intervals
| ^
index.c: In function ‘mm_idx_bed_junc’:
index.c:758:42: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
758 | if (mi->I == 0 || ctg < 0 || ctg >= mi->n_seq) return -1;
| ^~
index.c: In function ‘mm_idx_load’:
index.c:520:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
520 | fread(&l, 1, 1, fp);
| ^~~~~~~~~~~~~~~~~~~
index.c:523:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
523 | fread(s->name, 1, l, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:526:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
526 | fread(&s->len, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:536:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
536 | fread(&b->n, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:538:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fread(b->p, 8, b->n, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:539:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
539 | fread(&size, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:546:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
546 | fread(x, 8, 2, fp);
| ^~~~~~~~~~~~~~~~~~
index.c:554:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fread(mi->S, 4, (sum_len + 7) / 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c kalloc.c -o build/temp.linux-aarch64-cpython-312/kalloc.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c ksw2_extd2_sse.c -o build/temp.linux-aarch64-cpython-312/ksw2_extd2_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_extd2_sse.c:6:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
6 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c ksw2_exts2_sse.c -o build/temp.linux-aarch64-cpython-312/ksw2_exts2_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_exts2_sse.c:6:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
6 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c ksw2_extz2_sse.c -o build/temp.linux-aarch64-cpython-312/ksw2_extz2_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_extz2_sse.c:5:9: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
5 | #define SIMDE_ENABLE_NATIVE_ALIASES
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c ksw2_ll_sse.c -o build/temp.linux-aarch64-cpython-312/ksw2_ll_sse.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c kthread.c -o build/temp.linux-aarch64-cpython-312/kthread.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c lchain.c -o build/temp.linux-aarch64-cpython-312/lchain.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
lchain.c: In function ‘mg_chain_bk_end’:
lchain.c:18:37: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
18 | s = i < 0? z[k].x : (int32_t)z[k].x - f[i];
| ^~~~~~~~~~~~~~~~~~~~~~
lchain.c: In function ‘mg_chain_backtrack’:
lchain.c:51:46: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
51 | sc = i < 0? z[k].x : (int32_t)z[k].x - f[i];
| ^~~~~~~~~~~~~~~~~~~~~~
lchain.c:66:46: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
66 | sc = i < 0? z[k].x : (int32_t)z[k].x - f[i];
| ^~~~~~~~~~~~~~~~~~~~~~
lchain.c: In function ‘mg_lchain_dp’:
lchain.c:190:56: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
190 | if (max_ii < 0 || a[i].x - a[max_ii].x > (int64_t)max_dist_x) {
| ^
lchain.c:204:57: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
204 | if (max_ii < 0 || (a[i].x - a[max_ii].x <= (int64_t)max_dist_x && f[max_ii] < f[i]))
| ^~
lchain.c: In function ‘mg_lchain_rmq’:
lchain.c:295:117: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
295 | while (st < i && (a[i].x>>32 != a[st].x>>32 || a[i].x > a[st].x + max_dist || krmq_size(head, root) > cap_rmq_size)) {
| ^
lchain.c:304:155: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
304 | while (st_inner < i && (a[i].x>>32 != a[st_inner].x>>32 || a[i].x > a[st_inner].x + max_dist_inner || krmq_size(head, root_inner) > cap_rmq_size)) {
| ^
lchain.c:356:34: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
356 | if (max_rmq_size < krmq_size(head, root)) max_rmq_size = krmq_size(head, root);
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c map.c -o build/temp.linux-aarch64-cpython-312/map.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
map.c: In function ‘mm_dust_minier’:
map.c:48:70: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
48 | int ss = s > (int32_t)(dreg[v]>>32)? s : dreg[v]>>32;
| ^
map.c:49:64: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
49 | int ee = e < (int32_t)dreg[v]? e : (uint32_t)dreg[v];
| ^
map.c: In function ‘mm_map_frag’:
map.c:367:84: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int64_t’ {aka ‘long int’} [-Wsign-compare]
367 | if (kmst.largest > 1U<<28 || (opt->cap_kalloc > 0 && kmst.capacity > opt->cap_kalloc)) {
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c misc.c -o build/temp.linux-aarch64-cpython-312/misc.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c options.c -o build/temp.linux-aarch64-cpython-312/options.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c pe.c -o build/temp.linux-aarch64-cpython-312/pe.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c python/mappy.c -o build/temp.linux-aarch64-cpython-312/python/mappy.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c sdust.c -o build/temp.linux-aarch64-cpython-312/sdust.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c seed.c -o build/temp.linux-aarch64-cpython-312/seed.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
seed.c: In function ‘mm_seed_mz_flt’:
seed.c:9:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
9 | if (mv->n <= q_occ_max || q_occ_frac <= 0.0f || q_occ_max <= 0) return;
| ^~
seed.c: In function ‘mm_seed_select’:
seed.c:65:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
65 | if (a[i].n > max_occ) ++m;
| ^
seed.c:68:38: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
68 | if (i == n || a[i].n <= max_occ) {
| ^~
seed.c:71:54: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
71 | int32_t pe = i == n? len : (uint32_t)a[i].q_pos>>1;
| ^~~
seed.c:81:60: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
81 | if (a[j].n < (int32_t)(b[0]>>32)) { // then update the heap
| ^
seed.c:90:52: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
90 | if (a[j].n > max_max_occ)
| ^
seed.c: In function ‘mm_collect_matches’:
seed.c:109:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
109 | for (i = 0; i < n_m0; ++i)
| ^
seed.c:110:36: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
110 | if (m[i].n > max_occ)
| ^
seed.c:113:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
113 | for (i = 0, n_m = 0, *rep_len = 0, *n_a = 0; i < n_m0; ++i) {
| ^
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c sketch.c -o build/temp.linux-aarch64-cpython-312/sketch.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.12 -c splitidx.c -o build/temp.linux-aarch64-cpython-312/splitidx.o -DHAVE_KALLOC -ftree-vectorize -DKSW_SSE2_ONLY -DUSE_SIMDE -D__SSE2__ -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/align.o build/temp.linux-aarch64-cpython-312/bseq.o build/temp.linux-aarch64-cpython-312/esterr.o build/temp.linux-aarch64-cpython-312/format.o build/temp.linux-aarch64-cpython-312/hit.o build/temp.linux-aarch64-cpython-312/index.o build/temp.linux-aarch64-cpython-312/kalloc.o build/temp.linux-aarch64-cpython-312/ksw2_extd2_sse.o build/temp.linux-aarch64-cpython-312/ksw2_exts2_sse.o build/temp.linux-aarch64-cpython-312/ksw2_extz2_sse.o build/temp.linux-aarch64-cpython-312/ksw2_ll_sse.o build/temp.linux-aarch64-cpython-312/kthread.o build/temp.linux-aarch64-cpython-312/lchain.o build/temp.linux-aarch64-cpython-312/map.o build/temp.linux-aarch64-cpython-312/misc.o build/temp.linux-aarch64-cpython-312/options.o build/temp.linux-aarch64-cpython-312/pe.o build/temp.linux-aarch64-cpython-312/python/mappy.o build/temp.linux-aarch64-cpython-312/sdust.o build/temp.linux-aarch64-cpython-312/seed.o build/temp.linux-aarch64-cpython-312/sketch.o build/temp.linux-aarch64-cpython-312/splitidx.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/mappy.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting python/minimap2.py -> build/scripts-3.12
changing mode of build/scripts-3.12/minimap2.py from 644 to 755
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
debian/test_script
[M::mm_idx_gen::0.003*1.73] collected minimizers
[M::mm_idx_gen::0.005*2.21] sorted minimizers
[M::main::0.005*2.20] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.006*2.12] mid_occ = 10
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.006*2.06] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
[M::worker_pipeline::0.024*1.27] mapped 1 sequences
[M::main] Version: 2.27-r1193
[M::main] CMD: minimap2 -a test/MT-human.fa test/MT-orang.fa
[M::main] Real time: 0.026 sec; CPU: 0.033 sec; Peak RSS: 0.006 GB
[M::mm_idx_gen::0.003*1.71] collected minimizers
[M::mm_idx_gen::0.005*2.09] sorted minimizers
[M::main::0.008*1.67] loaded/built the index for 1 target sequence(s)
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.008*1.65] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
[M::main] Version: 2.27-r1193
[M::main] CMD: minimap2 -d MT-human.mmi test/MT-human.fa
[M::main] Real time: 0.010 sec; CPU: 0.015 sec; Peak RSS: 0.003 GB
[M::main::0.005*1.21] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.005*1.19] mid_occ = 10
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.006*1.18] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
[M::worker_pipeline::0.024*1.08] mapped 1 sequences
[M::main] Version: 2.27-r1193
[M::main] CMD: minimap2 -a MT-human.mmi test/MT-orang.fa
[M::main] Real time: 0.026 sec; CPU: 0.027 sec; Peak RSS: 0.006 GB
rm test.sam
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
dh_auto_install --buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/mappy.cpython-313-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages
running install_egg_info
running egg_info
creating mappy.egg-info
writing mappy.egg-info/PKG-INFO
writing dependency_links to mappy.egg-info/dependency_links.txt
writing top-level names to mappy.egg-info/top_level.txt
writing manifest file 'mappy.egg-info/SOURCES.txt'
reading manifest file 'mappy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'sse2neon/emmintrin.h'
adding license file 'LICENSE.txt'
writing manifest file 'mappy.egg-info/SOURCES.txt'
Copying mappy.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/mappy-2.27.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/bin
copying build/scripts-3.13/minimap2.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/tmp/usr/bin/minimap2.py to 755
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/mappy.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages
running install_egg_info
running egg_info
writing mappy.egg-info/PKG-INFO
writing dependency_links to mappy.egg-info/dependency_links.txt
writing top-level names to mappy.egg-info/top_level.txt
reading manifest file 'mappy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'sse2neon/emmintrin.h'
adding license file 'LICENSE.txt'
writing manifest file 'mappy.egg-info/SOURCES.txt'
Copying mappy.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.12/dist-packages/mappy-2.27.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.12/minimap2.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/tmp/usr/bin/minimap2.py to 755
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_dwz -a
debian/rules override_dh_strip
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_strip
ranlib /<<PKGBUILDDIR>>/debian/libminimap2-dev/usr/lib/libminimap2.a
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libminimap2-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'minimap2' in '../minimap2_2.27+dfsg-1+bd1_arm64.deb'.
dpkg-deb: building package 'libminimap2-dev' in '../libminimap2-dev_2.27+dfsg-1+bd1_arm64.deb'.
dpkg-deb: building package 'python3-mappy-dbgsym' in '../python3-mappy-dbgsym_2.27+dfsg-1+bd1_arm64.deb'.
dpkg-deb: building package 'python3-mappy' in '../python3-mappy_2.27+dfsg-1+bd1_arm64.deb'.
dpkg-deb: building package 'minimap2-dbgsym' in '../minimap2-dbgsym_2.27+dfsg-1+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../minimap2_2.27+dfsg-1+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../minimap2_2.27+dfsg-1+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T07:09:34Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
minimap2_2.27+dfsg-1+bd1_arm64.changes:
---------------------------------------
Format: 1.8
Date: Thu, 24 Oct 2024 07:08:41 +0000
Source: minimap2 (2.27+dfsg-1)
Binary: libminimap2-dev minimap2 minimap2-dbgsym python3-mappy python3-mappy-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 2.27+dfsg-1+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
libminimap2-dev - development headers for libminimap
minimap2 - versatile pairwise aligner for genomic and spliced nucleotide seq
python3-mappy - Python3 interface minimap2
Changes:
minimap2 (2.27+dfsg-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
Checksums-Sha1:
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Files:
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49fbf6b5c8269a42177e2f4c4aa031d3 271612 debug optional minimap2-dbgsym_2.27+dfsg-1+bd1_arm64.deb
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e04f62238098b26cf8b9056beb752517 1039796 debug optional python3-mappy-dbgsym_2.27+dfsg-1+bd1_arm64.deb
ac73e3609038d57a69b021f0213324c0 157652 python optional python3-mappy_2.27+dfsg-1+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: minimap2 (2.27+dfsg-1)
Binary: libminimap2-dev minimap2 minimap2-dbgsym python3-mappy python3-mappy-dbgsym
Architecture: arm64
Version: 2.27+dfsg-1+bd1
Binary-Only-Changes:
minimap2 (2.27+dfsg-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Thu, 24 Oct 2024 07:08:41 +0000
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 07:09:33 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
aglfn (= 1.7+git20191031.4036a9c-2),
apt (= 2.9.10),
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-7),
cpp-14-aarch64-linux-gnu (= 14.2.0-7),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
cython3 (= 3.0.11+dfsg-1+debusine1),
d-shlibs (= 0.107),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debian-archive-keyring (= 2023.4),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
fontconfig (= 2.15.0-1.1),
fontconfig-config (= 2.15.0-1.1),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
fonts-gfs-baskerville (= 1.1-6),
fonts-gfs-porson (= 1.1-7),
fonts-lmodern (= 2.005-1),
fonts-urw-base35 (= 20200910-8),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-7),
g++-14-aarch64-linux-gnu (= 14.2.0-7),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-7),
gcc-14-aarch64-linux-gnu (= 14.2.0-7),
gcc-14-base (= 14.2.0-7),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
ghostscript (= 10.04.0~dfsg-1),
gnuplot-data (= 6.0.0+dfsg1-3),
gnuplot-nox (= 6.0.0+dfsg1-3),
gpgv (= 2.2.44-1),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libabsl20230802 (= 20230802.1-4),
libacl1 (= 2.3.2-2),
libaom3 (= 3.10.0-1),
libapache-pom-java (= 33-2),
libapt-pkg6.0t64 (= 2.9.10),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-7),
libatomic1 (= 14.2.0-7),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libavahi-client3 (= 0.8-13+b2),
libavahi-common-data (= 0.8-13+b2),
libavahi-common3 (= 0.8-13+b2),
libavif16 (= 1.1.1-1),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-9),
libbrotli1 (= 1.1.0-2+b4),
libbsd0 (= 0.12.2-2),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcairo2 (= 1.18.2-2),
libcap-ng0 (= 0.8.5-3),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-7),
libcom-err2 (= 1.47.1-1),
libcommons-logging-java (= 1.3.0-1),
libcommons-parent-java (= 56-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcups2t64 (= 2.4.10-2),
libdatrie1 (= 0.2.13-3),
libdav1d7 (= 1.5.0-1),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdbus-1-3 (= 1.14.10-4+b1),
libde265-0 (= 1.0.15-1+b2),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdeflate0 (= 1.22-1),
libdpkg-perl (= 1.22.11),
libedit2 (= 3.1-20240808-1),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libfontbox-java (= 1:1.8.16-5),
libfontconfig1 (= 2.15.0-1.1),
libfontenc1 (= 1:1.1.8-1),
libfreetype6 (= 2.13.3+dfsg-1),
libfribidi0 (= 1.0.15-1),
libgav1-1 (= 0.19.0-2+b1),
libgcc-14-dev (= 14.2.0-7),
libgcc-s1 (= 14.2.0-7),
libgcrypt20 (= 1.11.0-6),
libgd3 (= 2.3.3-12),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libglib2.0-0t64 (= 2.82.2-1),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgnutls30t64 (= 3.8.6-2),
libgomp1 (= 14.2.0-7),
libgpg-error0 (= 1.50-4),
libgprofng0 (= 2.43.1-5),
libgraphite2-3 (= 1.3.14-2),
libgs-common (= 10.04.0~dfsg-1),
libgs10 (= 10.04.0~dfsg-1),
libgs10-common (= 10.04.0~dfsg-1),
libgssapi-krb5-2 (= 1.21.3-3),
libharfbuzz0b (= 10.0.1-1),
libheif-plugin-dav1d (= 1.18.2-2),
libheif-plugin-libde265 (= 1.18.2-2),
libheif1 (= 1.18.2-2),
libhogweed6t64 (= 3.10-1),
libhwasan0 (= 14.2.0-7),
libice6 (= 2:1.0.10-1+b1),
libicu72 (= 72.1-5),
libidn12 (= 1.42-2),
libidn2-0 (= 2.3.7-2),
libijs-0.35 (= 0.35-15.1+b1),
libimagequant0 (= 2.18.0-1+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-7),
libjansson4 (= 2.14-2+b2),
libjbig0 (= 2.1-6.1+b1),
libjbig2dec0 (= 0.20-1+b2),
libjpeg62-turbo (= 1:2.1.5-3),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3.1),
libkpathsea6 (= 2024.20240313.70630+ds-4),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblcms2-2 (= 2.16-2),
liblerc4 (= 4.0.0+ds-4+b1),
liblsan0 (= 14.2.0-7),
liblua5.4-0 (= 5.4.6-3+b1),
liblz4-1 (= 1.9.4-3),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfi0 (= 1.5.4+ds-3),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnettle8t64 (= 3.10-1),
libnsl2 (= 1.3.0-3+b2),
libopenjp2-7 (= 2.5.0-2+b3),
libp11-kit0 (= 0.25.5-2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpango-1.0-0 (= 1.54.0+ds-3),
libpangocairo-1.0-0 (= 1.54.0+ds-3),
libpangoft2-1.0-0 (= 1.54.0+ds-3),
libpaper-utils (= 1.1.29+b1),
libpaper1 (= 1.1.29+b1),
libpcre2-8-0 (= 10.42-4+b1),
libpdfbox-java (= 1:1.8.16-5),
libperl5.40 (= 5.40.0-6),
libpipeline1 (= 1.5.8-1),
libpixman-1-0 (= 0.42.2-1+b1),
libpng16-16t64 (= 1.6.44-2),
libpotrace0 (= 1.16-2+b1),
libptexenc1 (= 2024.20240313.70630+ds-4),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0-1),
libpython3.13-dev (= 3.13.0-1),
libpython3.13-minimal (= 3.13.0-1),
libpython3.13-stdlib (= 3.13.0-1),
libraqm0 (= 0.10.1-1+b1),
librav1e0.7 (= 0.7.1-7+b2),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsharpyuv0 (= 1.4.0-0.1),
libsimde-dev (= 0.8.2-1),
libsm6 (= 2:1.2.3-1+b1),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-7),
libstdc++6 (= 14.2.0-7),
libsvtav1enc2 (= 2.2.1+dfsg-2),
libsynctex2 (= 2024.20240313.70630+ds-4),
libsystemd0 (= 256.7-2),
libtasn1-6 (= 4.19.0-3+b2),
libteckit0 (= 2.5.12+ds1-1),
libtexlua53-5 (= 2024.20240313.70630+ds-4),
libthai-data (= 0.1.29-2),
libthai0 (= 0.1.29-2),
libtiff6 (= 4.5.1+git230720-5),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-7),
libubsan1 (= 14.2.0-7),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.7-2),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libwebp7 (= 1.4.0-0.1),
libwebpmux3 (= 1.4.0-0.1),
libx11-6 (= 2:1.8.7-1+b1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1+b1),
libxaw7 (= 2:1.0.14-1+b2),
libxcb-render0 (= 1.17.0-2),
libxcb-shm0 (= 1.17.0-2),
libxcb1 (= 1.17.0-2),
libxdmcp6 (= 1:1.1.2-3+b1),
libxext6 (= 2:1.3.4-1+b2),
libxi6 (= 2:1.8.2-1),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libxmu6 (= 2:1.1.3-3+b2),
libxpm4 (= 1:3.5.17-1+b1),
libxrender1 (= 1:0.9.10-1.1+b1),
libxt6t64 (= 1:1.2.1-1.2),
libxxhash0 (= 0.8.2-2+b1),
libyuv0 (= 0.0.1888.20240710-3),
libzstd1 (= 1.5.6+dfsg-1),
libzzip-0-13t64 (= 0.13.72+dfsg.1-1.3),
linux-libc-dev (= 6.11.4-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.40.0-6),
perl-base (= 5.40.0-6),
perl-modules-5.40 (= 5.40.0-6),
po-debconf (= 1.0.21+nmu1),
poppler-data (= 0.4.12-1),
preview-latex-style (= 13.2-1),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-dev (= 3.12.6-1+debusine1),
python3-inflect (= 7.3.1-2),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-pkg-resources (= 74.1.2-2),
python3-setuptools (= 74.1.2-2),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
t1utils (= 1.41-4),
tar (= 1.35+dfsg-3),
tex-common (= 6.18),
texlive-base (= 2024.20240829-2),
texlive-binaries (= 2024.20240313.70630+ds-4),
texlive-font-utils (= 2024.20240829-1),
texlive-fonts-recommended (= 2024.20240829-2),
texlive-lang-greek (= 2024.20240829-1),
texlive-latex-base (= 2024.20240829-2),
texlive-latex-extra (= 2024.20240829-1),
texlive-latex-recommended (= 2024.20240829-2),
texlive-pictures (= 2024.20240829-2),
texlive-science (= 2024.20240829-1),
tzdata (= 2024b-3),
ucf (= 3.0043+nmu1),
util-linux (= 2.40.2-9),
x11-common (= 1:7.7+23.1),
xdg-utils (= 1.1.3-4.1),
xfonts-encodings (= 1:1.0.4-2.2),
xfonts-utils (= 1:7.7+7),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1729753721"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libminimap2-dev_2.27+dfsg-1+bd1_arm64.deb
-----------------------------------------
new Debian package, version 2.0.
size 114400 bytes: control archive=1376 bytes.
1052 bytes, 23 lines control
1060 bytes, 18 lines md5sums
Package: libminimap2-dev
Source: minimap2 (2.27+dfsg-1)
Version: 2.27+dfsg-1+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 376
Depends: zlib1g-dev
Section: libdevel
Priority: optional
Homepage: https://github.com/lh3/minimap2
Description: development headers for libminimap
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
This package contains the C library headers for using minimap in custom tools,
along with a static library.
drwxr-xr-x root/root 0 2024-10-24 07:08 ./
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/include/
-rw-r--r-- root/root 1811 2024-03-12 17:20 ./usr/include/bseq.h
-rw-r--r-- root/root 2630 2024-03-12 17:20 ./usr/include/kalloc.h
-rw-r--r-- root/root 4400 2024-03-12 17:20 ./usr/include/kdq.h
-rw-r--r-- root/root 3969 2024-03-12 17:20 ./usr/include/ketopt.h
-rw-r--r-- root/root 21381 2024-03-12 17:20 ./usr/include/khash.h
-rw-r--r-- root/root 16446 2024-03-12 17:20 ./usr/include/krmq.h
-rw-r--r-- root/root 8780 2024-03-12 17:20 ./usr/include/kseq.h
-rw-r--r-- root/root 5145 2024-03-12 17:20 ./usr/include/ksort.h
-rw-r--r-- root/root 8620 2024-03-12 17:20 ./usr/include/ksw2.h
-rw-r--r-- root/root 291 2024-03-12 17:20 ./usr/include/kthread.h
-rw-r--r-- root/root 3029 2024-03-12 17:20 ./usr/include/kvec.h
-rw-r--r-- root/root 14346 2024-03-12 17:20 ./usr/include/minimap.h
-rw-r--r-- root/root 6507 2024-03-12 17:20 ./usr/include/mmpriv.h
-rw-r--r-- root/root 574 2024-03-12 17:20 ./usr/include/sdust.h
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/
-rw-r--r-- root/root 263690 2024-10-24 07:08 ./usr/lib/libminimap2.a
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/libminimap2-dev/
-rw-r--r-- root/root 224 2024-10-24 07:08 ./usr/share/doc/libminimap2-dev/changelog.Debian.arm64.gz
-rw-r--r-- root/root 1732 2024-10-24 07:08 ./usr/share/doc/libminimap2-dev/changelog.Debian.gz
-rw-r--r-- root/root 3132 2024-03-18 16:12 ./usr/share/doc/libminimap2-dev/copyright
minimap2-dbgsym_2.27+dfsg-1+bd1_arm64.deb
-----------------------------------------
new Debian package, version 2.0.
size 271612 bytes: control archive=548 bytes.
404 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: minimap2-dbgsym
Source: minimap2 (2.27+dfsg-1)
Version: 2.27+dfsg-1+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 290
Depends: minimap2 (= 2.27+dfsg-1+bd1)
Section: debug
Priority: optional
Description: debug symbols for minimap2
Build-Ids: 0ba41ab86edd0a66f4727f47c4d0a71ae5a8b198
drwxr-xr-x root/root 0 2024-10-24 07:08 ./
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.build-id/0b/
-rw-r--r-- root/root 286304 2024-10-24 07:08 ./usr/lib/debug/.build-id/0b/a41ab86edd0a66f4727f47c4d0a71ae5a8b198.debug
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-10-24 07:08 ./usr/share/doc/minimap2-dbgsym -> minimap2
minimap2_2.27+dfsg-1+bd1_arm64.deb
----------------------------------
new Debian package, version 2.0.
size 380688 bytes: control archive=1536 bytes.
1466 bytes, 28 lines control
1064 bytes, 15 lines md5sums
Package: minimap2
Source: minimap2 (2.27+dfsg-1)
Version: 2.27+dfsg-1+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 512
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/lh3/minimap2
Description: versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
drwxr-xr-x root/root 0 2024-10-24 07:08 ./
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/bin/
-rwxr-xr-x root/root 200232 2024-10-24 07:08 ./usr/bin/minimap2
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc-base/
-rw-r--r-- root/root 553 2020-01-10 15:56 ./usr/share/doc-base/minimap2.minimap2
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/minimap2/
-rw-r--r-- root/root 224 2024-10-24 07:08 ./usr/share/doc/minimap2/changelog.Debian.arm64.gz
-rw-r--r-- root/root 1728 2024-10-24 07:08 ./usr/share/doc/minimap2/changelog.Debian.gz
-rw-r--r-- root/root 3132 2024-03-18 16:12 ./usr/share/doc/minimap2/copyright
-rw-r--r-- root/root 270203 2024-10-24 07:08 ./usr/share/doc/minimap2/minimap2.pdf
-rw-r--r-- root/root 347 2020-01-10 15:56 ./usr/share/doc/minimap2/run-unit-test
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/minimap2/test/
-rw-r--r-- root/root 5354 2024-03-12 17:20 ./usr/share/doc/minimap2/test/MT-human.fa.gz
-rw-r--r-- root/root 5367 2024-03-12 17:20 ./usr/share/doc/minimap2/test/MT-orang.fa.gz
-rw-r--r-- root/root 3540 2024-03-12 17:20 ./usr/share/doc/minimap2/test/q-inv.fa.gz
-rw-r--r-- root/root 44 2024-03-12 17:20 ./usr/share/doc/minimap2/test/q2.fa
-rw-r--r-- root/root 2525 2024-03-12 17:20 ./usr/share/doc/minimap2/test/t-inv.fa.gz
-rw-r--r-- root/root 79 2024-03-12 17:20 ./usr/share/doc/minimap2/test/t2.fa
-rw-r--r-- root/root 1095 2020-01-10 15:56 ./usr/share/doc/minimap2/test_script
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/man/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/man/man1/
-rw-r--r-- root/root 8195 2024-10-24 07:08 ./usr/share/man/man1/minimap2.1.gz
python3-mappy-dbgsym_2.27+dfsg-1+bd1_arm64.deb
----------------------------------------------
new Debian package, version 2.0.
size 1039796 bytes: control archive=664 bytes.
461 bytes, 12 lines control
303 bytes, 3 lines md5sums
Package: python3-mappy-dbgsym
Source: minimap2 (2.27+dfsg-1)
Version: 2.27+dfsg-1+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1151
Depends: python3-mappy (= 2.27+dfsg-1+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-mappy
Build-Ids: b3339035cc62f981fd1c50c9cb21eaa6ab5edca2 b9c7f3b562e6202c0a73c1ad8228040ac0ebcd1a
drwxr-xr-x root/root 0 2024-10-24 07:08 ./
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.build-id/b3/
-rw-r--r-- root/root 566048 2024-10-24 07:08 ./usr/lib/debug/.build-id/b3/339035cc62f981fd1c50c9cb21eaa6ab5edca2.debug
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.build-id/b9/
-rw-r--r-- root/root 563464 2024-10-24 07:08 ./usr/lib/debug/.build-id/b9/c7f3b562e6202c0a73c1ad8228040ac0ebcd1a.debug
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root 34376 2024-10-24 07:08 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-mappy.debug
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-10-24 07:08 ./usr/share/doc/python3-mappy-dbgsym -> python3-mappy
python3-mappy_2.27+dfsg-1+bd1_arm64.deb
---------------------------------------
new Debian package, version 2.0.
size 157652 bytes: control archive=1604 bytes.
1075 bytes, 22 lines control
944 bytes, 11 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
386 bytes, 12 lines * prerm #!/bin/sh
Package: python3-mappy
Source: minimap2 (2.27+dfsg-1)
Version: 2.27+dfsg-1+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 696
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), python3 (<< 3.14), python3 (>= 3.12~), python3:any
Section: python
Priority: optional
Homepage: https://github.com/lh3/minimap2
Description: Python3 interface minimap2
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
This package contains the Python3 interface for using minimap2.
drwxr-xr-x root/root 0 2024-10-24 07:08 ./
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/bin/
-rwxr-xr-x root/root 1341 2024-10-24 07:08 ./usr/bin/minimap2.py
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/python3/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/lib/python3/dist-packages/mappy-2.27.egg-info/
-rw-r--r-- root/root 7234 2024-10-24 07:08 ./usr/lib/python3/dist-packages/mappy-2.27.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2024-10-24 07:08 ./usr/lib/python3/dist-packages/mappy-2.27.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2024-10-24 07:08 ./usr/lib/python3/dist-packages/mappy-2.27.egg-info/top_level.txt
-rw-r--r-- root/root 336744 2024-10-24 07:08 ./usr/lib/python3/dist-packages/mappy.cpython-312-aarch64-linux-gnu.so
-rw-r--r-- root/root 336744 2024-10-24 07:08 ./usr/lib/python3/dist-packages/mappy.cpython-313-aarch64-linux-gnu.so
drwxr-xr-x root/root 0 2024-10-24 07:08 ./usr/share/
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lintian
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Setup apt archive
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Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Reading package lists...
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Reading package lists...
Reading package lists...
Install lintian build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-lintian-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-lintian-dummy.
(Reading database ... 56285 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 25584
Build-Time: 52
Distribution: sid
Host Architecture: arm64
Install-Time: 137
Job: /tmp/debusine-fetch-exec-upload-tb1thvze/minimap2_2.27+dfsg-1.dsc
Lintian: pass
Machine Architecture: arm64
Package: minimap2
Package-Time: 229
Source-Version: 2.27+dfsg-1
Space: 25584
Status: successful
Version: 2.27+dfsg-1+bd1
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Finished at 2024-10-24T07:09:34Z
Build needed 00:03:49, 25584k disk space