sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-02.freexian.com
+==============================================================================+
| htseq 2.0.5-2+bd1 (arm64) Thu, 24 Oct 2024 08:37:35 +0000 |
+==============================================================================+
Package: htseq
Version: 2.0.5-2+bd1
Source Version: 2.0.5-2
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/872923/system.tar.xz to /tmp/tmp.sbuild.L1UTvdQKNP...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/libpython3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/libpython3-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/python3-numpy-dbgsym_1.26.4+ds-11+bootstrap1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/python3-matplotlib-dbgsym_3.8.3-3+bootstrap1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/python3-matplotlib_3.8.3-3+bootstrap1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/python-matplotlib-data_3.8.3-3+bootstrap1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/cython3-dbgsym_3.0.11+dfsg-1+debusine1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/python3-pysam-dbgsym_0.22.1+ds-2+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-uyav_ouo/python3-pysam_0.22.1+ds-2+debusine1_arm64.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/htseq-Gpw8LF/resolver-vfthFk' with '<<RESOLVERDIR>>'
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| Update chroot |
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:5 http://deb.debian.org/debian sid/main arm64 sysvinit-utils arm64 3.11-1 [33.0 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-3.1 [9256 B]
Get:8 http://deb.debian.org/debian sid/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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| Fetch source files |
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Local sources
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/tmp/debusine-fetch-exec-upload-uyav_ouo/htseq_2.0.5-2.dsc exists in /tmp/debusine-fetch-exec-upload-uyav_ouo; copying to chroot
I: NOTICE: Log filtering will replace 'build/htseq-Gpw8LF/htseq-2.0.5' with '<<PKGBUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libdeflate0
libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgcc-14-dev libgfortran5 libgraphite2-3 libharfbuzz0b libhts3t64
libhtscodecs2 libhwasan0 libimagequant0 libisl23 libitm1 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3
libmpfr6 libncursesw6 libnsl2 libopenjp2-7 libpng16-16t64 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxrender1 libxslt1.1 libxss1 linux-libc-dev m4 media-types po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
python3-attr python3-autocommand python3-brotli python3-chardet
python3-contourpy python3-cycler python3-dateutil python3-debian
python3-decorator python3-dev python3-fonttools python3-fs python3-inflect
python3-jaraco.context python3-jaraco.functools python3-kiwisolver
python3-lxml python3-lz4 python3-matplotlib python3-minimal
python3-more-itertools python3-mpmath python3-numpy python3-packaging
python3-pil python3-pil.imagetk python3-pkg-resources python3-pyparsing
python3-pysam python3-scipy python3-setuptools python3-six python3-sympy
python3-tk python3-typeguard python3-typing-extensions python3-tz
python3-ufolib2 python3-zipp python3.12 python3.12-dev python3.12-minimal
python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
rpcsvc-proto swig tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit python3-build python3-installer
python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu libc-devtools glibc-doc libjs-jquery-ui-docs
liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc
python3-venv python-attr-doc python-cycler-doc python-lxml-doc
cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
python3-gmpy2 gfortran python-numpy-doc python3-pytest python-pil-doc
python-pyparsing-doc python-scipy-doc python-setuptools-doc
texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.12-venv
python3.12-doc binfmt-support python3.13-venv python3.13-doc swig-doc
swig-examples
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl python3-apt zstd python3-bs4
python3-cssselect python3-html5lib python3-olefile isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libdeflate0
libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgcc-14-dev libgfortran5 libgraphite2-3 libharfbuzz0b libhts3t64
libhtscodecs2 libhwasan0 libimagequant0 libisl23 libitm1 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3
libmpfr6 libncursesw6 libnsl2 libopenjp2-7 libpng16-16t64 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxrender1 libxslt1.1 libxss1 linux-libc-dev m4 media-types po-debconf
python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs
python3-attr python3-autocommand python3-brotli python3-chardet
python3-contourpy python3-cycler python3-dateutil python3-debian
python3-decorator python3-dev python3-fonttools python3-fs python3-inflect
python3-jaraco.context python3-jaraco.functools python3-kiwisolver
python3-lxml python3-lz4 python3-matplotlib python3-minimal
python3-more-itertools python3-mpmath python3-numpy python3-packaging
python3-pil python3-pil.imagetk python3-pkg-resources python3-pyparsing
python3-pysam python3-scipy python3-setuptools python3-six python3-sympy
python3-tk python3-typeguard python3-typing-extensions python3-tz
python3-ufolib2 python3-zipp python3.12 python3.12-dev python3.12-minimal
python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
rpcsvc-proto sbuild-build-depends-main-dummy swig tk8.6-blt2.5 unicode-data
x11-common zlib1g-dev
0 upgraded, 172 newly installed, 0 to remove and 0 not upgraded.
Need to get 136 MB/155 MB of archives.
After this operation, 687 MB of additional disk space will be used.
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Get:2 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:6 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:7 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:11 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python-matplotlib-data 3.8.3-3+bootstrap1 [2731 kB]
Get:12 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:13 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:14 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:15 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:21 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:24 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-matplotlib 3.8.3-3+bootstrap1 [5583 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:28 file:/<<BUILDDIR>>/resolver-KEvqFx/apt_archive ./ python3-pysam 0.22.1+ds-2+debusine1 [3880 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2 [143 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.7-1 [328 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B]
Get:52 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:62 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:63 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:64 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:73 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:75 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:76 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:78 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:80 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:81 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:82 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:87 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:97 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libhts3t64 arm64 1.20+ds-1 [416 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 python3-attr all 24.2.0-1 [68.4 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 python3-brotli arm64 1.1.0-2+b4 [301 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get:150 http://deb.debian.org/debian sid/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 python3-debian all 0.1.49 [115 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:153 http://deb.debian.org/debian sid/main arm64 python3-tz all 2024.1-2 [30.9 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 python3-six all 1.16.0-7 [16.4 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 python3-fs all 2.4.16-4 [95.4 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB]
Get:159 http://deb.debian.org/debian sid/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 python3-sympy all 1.13.3-1 [4147 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 python3-pil arm64 10.4.0-1 [480 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 python3-tk arm64 3.12.6-1 [9428 B]
Get:169 http://deb.debian.org/debian sid/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 swig arm64 4.2.1-1 [1350 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libpython3.12-minimal:arm64 (3.12.7-1) ...
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Setting up libpython3.12-minimal:arm64 (3.12.7-1) ...
Setting up libexpat1:arm64 (2.6.3-1) ...
Setting up python3.12-minimal (3.12.7-1) ...
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Setting up python3-minimal (3.12.6-1+debusine1) ...
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: htseq
Binary: python3-htseq
Architecture: any
Version: 2.0.5-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Diane Trout <diane@ghic.org>, Andreas Tille <tille@debian.org>
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/htseq
Vcs-Git: https://salsa.debian.org/med-team/htseq.git
Testsuite: autopkgtest-pkg-python
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3
Package-List:
python3-htseq deb python optional arch=any
Checksums-Sha1:
d2772fd4ec94c758100796793cf7ae7361a935e8 36799405 htseq_2.0.5.orig.tar.gz
ed1583c621b0b7711c91a84f09e2e14bb7d5bb61 11228 htseq_2.0.5-2.debian.tar.xz
Checksums-Sha256:
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ded8f537c65372c4d785425ef1785f48c5a695890fd4e26e53e6f2bf7f825e54 11228 htseq_2.0.5-2.debian.tar.xz
Files:
ce61940ea41f8d6aa90ae37e1b7a78ae 36799405 htseq_2.0.5.orig.tar.gz
c8332a4203bec208d548fae78c729876 11228 htseq_2.0.5-2.debian.tar.xz
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-----END PGP SIGNATURE-----
gpgv: Signature made Fri Jun 14 16:08:34 2024 UTC
gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
gpgv: issuer "tchet@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./htseq_2.0.5-2.dsc: no acceptable signature found
dpkg-source: info: extracting htseq in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking htseq_2.0.5.orig.tar.gz
dpkg-source: info: unpacking htseq_2.0.5-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.0.5-2+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package htseq
dpkg-buildpackage: info: source version 2.0.5-2+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
# setup.py creates some symlinks in clean target
# remove these links to keep source tree clean
for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \
if [ -L ${link} ] ; then rm ${link} ; fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running config
I: pybuild base:311: python3.12 setup.py config
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_py
running preprocess
Cython version 3.0.11
Deprecated command line option: -py3. Ignored, this option is no longer supported.
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts
copying HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features
running build_ext
building 'HTSeq._HTSeq' extension
creating build
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-313/src/_HTSeq.o -w
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_HTSeq.cpython-313-aarch64-linux-gnu.so
building 'HTSeq._StepVector' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-313/src/StepVector_wrap.o -w
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_StepVector.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting scripts/htseq-qa -> build/scripts-3.13
copying and adjusting scripts/htseq-count -> build/scripts-3.13
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.13
changing mode of build/scripts-3.13/htseq-qa from 644 to 755
changing mode of build/scripts-3.13/htseq-count from 644 to 755
changing mode of build/scripts-3.13/htseq-count-barcodes from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_py
running preprocess
Cython version 3.0.11
Deprecated command line option: -py3. Ignored, this option is no longer supported.
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts
copying HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts
copying HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts
copying HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts
copying HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts
copying HTSeq/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/features.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features
copying HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features
running build_ext
building 'HTSeq._HTSeq' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -w
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-aarch64-linux-gnu.so
building 'HTSeq._StepVector' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -w
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting scripts/htseq-qa -> build/scripts-3.12
copying and adjusting scripts/htseq-count -> build/scripts-3.12
copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.12
changing mode of build/scripts-3.12/htseq-qa from 644 to 755
changing mode of build/scripts-3.12/htseq-count from 644 to 755
changing mode of build/scripts-3.12/htseq-count-barcodes from 644 to 755
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build; python3.13 -m unittest discover -v
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\='
_re_vcf_meta_comment = re.compile("^##([a-zA-Z]+)\=(.*)$")
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s'
_re_attr_main = re.compile("\s*([^\s\=]+)[\s=]+(.*)")
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s'
_re_attr_empty = re.compile("^\s*$")
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s'
_re_gff_meta_comment = re.compile("##\s*(\S+)\s+(\S*)")
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build; python3.12 -m unittest discover -v
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\='
_re_vcf_meta_comment = re.compile("^##([a-zA-Z]+)\=(.*)$")
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s'
_re_attr_main = re.compile("\s*([^\s\=]+)[\s=]+(.*)")
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s'
_re_attr_empty = re.compile("^\s*$")
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s'
_re_gff_meta_comment = re.compile("##\s*(\S+)\s+(\S*)")
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-htseq/ -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running preprocess
Cython version 3.0.11
Deprecated command line option: -py3. Ignored, this option is no longer supported.
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-313/src/_HTSeq.o -w
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_HTSeq.cpython-313-aarch64-linux-gnu.so
building 'HTSeq._StepVector' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-313/src/StepVector_wrap.o -w
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_StepVector.cpython-313-aarch64-linux-gnu.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/StretchVector.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/features.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/_version.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/utils.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/StepVector.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_HTSeq.cpython-313-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_StepVector.cpython-313-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/_version.py to _version.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/utils.py to utils.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/StepVector.py to StepVector.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/utils.py to utils.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/qa.py to qa.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/scripts/count.py to count.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/__init__.py to __init__.cpython-313.pyc
/usr/lib/python3.13/dist-packages/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\='
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq/features.py to features.cpython-313.pyc
/usr/lib/python3.13/dist-packages/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s'
running install_egg_info
running egg_info
creating HTSeq.egg-info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
adding license file 'LICENSE'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.13/dist-packages/HTSeq-2.0.5.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.13/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.13/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.13/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-htseq
/bin/sh: 1: git: not found
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running preprocess
Cython version 3.0.11
Deprecated command line option: -py3. Ignored, this option is no longer supported.
copying HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
copying HTSeq/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq
running build_ext
building 'HTSeq._HTSeq' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -w
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/_HTSeq.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-aarch64-linux-gnu.so
building 'HTSeq._StepVector' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -w
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/StepVector_wrap.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-aarch64-linux-gnu.so
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_version.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StretchVector.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_version.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/__init__.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/utils.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StepVector.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/features.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/StepVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/utils.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features
creating /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-312.pyc -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/qa.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/StretchVector.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq_internal.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-aarch64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_version.py to _version.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/utils.py to utils.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StepVector.py to StepVector.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/utils.py to utils.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/qa.py to qa.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count.py to count.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__init__.py to __init__.cpython-312.pyc
/usr/lib/python3.12/dist-packages/HTSeq/__init__.py:583: SyntaxWarning: invalid escape sequence '\='
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-312.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/features.py to features.cpython-312.pyc
/usr/lib/python3.12/dist-packages/HTSeq/features.py:14: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/HTSeq/features.py:15: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/HTSeq/features.py:16: SyntaxWarning: invalid escape sequence '\s'
running install_egg_info
running egg_info
writing HTSeq.egg-info/PKG-INFO
writing dependency_links to HTSeq.egg-info/dependency_links.txt
writing requirements to HTSeq.egg-info/requires.txt
writing top-level names to HTSeq.egg-info/top_level.txt
reading manifest file 'HTSeq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'todo.txt'
adding license file 'LICENSE'
writing manifest file 'HTSeq.egg-info/SOURCES.txt'
Copying HTSeq.egg-info to /<<PKGBUILDDIR>>/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq-2.0.5.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.12/htseq-qa -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.12/htseq-count-barcodes -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
copying build/scripts-3.12/htseq-count -> /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-qa to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755
changing mode of /<<PKGBUILDDIR>>/debian/python3-htseq/usr/bin/htseq-count to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_python3
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-htseq' in '../python3-htseq_2.0.5-2+bd1_arm64.deb'.
dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_2.0.5-2+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../htseq_2.0.5-2+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../htseq_2.0.5-2+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T08:42:54Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
htseq_2.0.5-2+bd1_arm64.changes:
--------------------------------
Format: 1.8
Date: Thu, 24 Oct 2024 08:39:42 +0000
Source: htseq (2.0.5-2)
Binary: python3-htseq python3-htseq-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 2.0.5-2+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
python3-htseq - Python3 high-throughput genome sequencing read analysis utilities
Changes:
htseq (2.0.5-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
Checksums-Sha1:
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Checksums-Sha256:
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8c0f783d106afff95de3b5d27c773fbf555f62273d73cfbe5941187fbd1fef82 3206944 python3-htseq-dbgsym_2.0.5-2+bd1_arm64.deb
cd63b98e29440962cdd9d260add3cd600650a6025aec49dfce0a106bbc735c65 370616 python3-htseq_2.0.5-2+bd1_arm64.deb
Files:
23e4541fdc8a2c12d50009bd4ed7546e 10068 python optional htseq_2.0.5-2+bd1_arm64.buildinfo
2141ad5900bf1c8f78962bef76f3a4ba 3206944 debug optional python3-htseq-dbgsym_2.0.5-2+bd1_arm64.deb
3719b2c7ffc095b32ec69ddb6e7313ee 370616 python optional python3-htseq_2.0.5-2+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: htseq (2.0.5-2)
Binary: python3-htseq python3-htseq-dbgsym
Architecture: arm64
Version: 2.0.5-2+bd1
Binary-Only-Changes:
htseq (2.0.5-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Thu, 24 Oct 2024 08:39:42 +0000
Checksums-Md5:
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3719b2c7ffc095b32ec69ddb6e7313ee 370616 python3-htseq_2.0.5-2+bd1_arm64.deb
Checksums-Sha1:
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c490e897a70e4e49adbb58dcd1a2b7f5f2c55cdf 370616 python3-htseq_2.0.5-2+bd1_arm64.deb
Checksums-Sha256:
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cd63b98e29440962cdd9d260add3cd600650a6025aec49dfce0a106bbc735c65 370616 python3-htseq_2.0.5-2+bd1_arm64.deb
Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 08:42:53 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
blt (= 2.5.3+dfsg-7),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-7),
cpp-14-aarch64-linux-gnu (= 14.2.0-7),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
cython3 (= 3.0.11+dfsg-1+debusine1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
fontconfig-config (= 2.15.0-1.1),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
fonts-lyx (= 2.4.2.1-1),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-7),
g++-14-aarch64-linux-gnu (= 14.2.0-7),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-7),
gcc-14-aarch64-linux-gnu (= 14.2.0-7),
gcc-14-base (= 14.2.0-7),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-7),
libatomic1 (= 14.2.0-7),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-9),
libbrotli1 (= 1.1.0-2+b4),
libbsd0 (= 0.12.2-2),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-7),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcurl3t64-gnutls (= 8.10.1-2),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdeflate0 (= 1.22-1),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libfontconfig1 (= 2.15.0-1.1),
libfreetype6 (= 2.13.3+dfsg-1),
libfribidi0 (= 1.0.15-1),
libgcc-14-dev (= 14.2.0-7),
libgcc-s1 (= 14.2.0-7),
libgcrypt20 (= 1.11.0-6),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-7),
libglib2.0-0t64 (= 2.82.2-1),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgnutls30t64 (= 3.8.6-2),
libgomp1 (= 14.2.0-7),
libgpg-error0 (= 1.50-4),
libgprofng0 (= 2.43.1-5),
libgraphite2-3 (= 1.3.14-2),
libgssapi-krb5-2 (= 1.21.3-3),
libharfbuzz0b (= 10.0.1-1),
libhogweed6t64 (= 3.10-1),
libhts3t64 (= 1.20+ds-1),
libhtscodecs2 (= 1.6.1-1),
libhwasan0 (= 14.2.0-7),
libicu72 (= 72.1-5),
libidn2-0 (= 2.3.7-2),
libimagequant0 (= 2.18.0-1+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-7),
libjansson4 (= 2.14-2+b2),
libjbig0 (= 2.1-6.1+b1),
libjpeg62-turbo (= 1:2.1.5-3),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-jquery-ui (= 1.13.2+dfsg-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3.1),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
liblbfgsb0 (= 3.0+dfsg.4-1+b1),
liblcms2-2 (= 2.16-2),
libldap-2.5-0 (= 2.5.18+dfsg-3+b1),
liblerc4 (= 4.0.0+ds-4+b1),
liblsan0 (= 14.2.0-7),
liblz4-1 (= 1.9.4-3),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnettle8t64 (= 3.10-1),
libnghttp2-14 (= 1.63.0-1),
libnghttp3-9 (= 1.4.0-1),
libngtcp2-16 (= 1.6.0-1),
libngtcp2-crypto-gnutls8 (= 1.6.0-1),
libnsl2 (= 1.3.0-3+b2),
libopenjp2-7 (= 2.5.0-2+b3),
libp11-kit0 (= 0.25.5-2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.40 (= 5.40.0-6),
libpipeline1 (= 1.5.8-1),
libpng16-16t64 (= 1.6.44-2),
libpsl5t64 (= 0.21.2-1.1),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0-1),
libpython3.13-dev (= 3.13.0-1),
libpython3.13-minimal (= 3.13.0-1),
libpython3.13-stdlib (= 3.13.0-1),
libqhull-r8.0 (= 2020.2-6+b1),
libraqm0 (= 0.10.1-1+b1),
libreadline8t64 (= 8.2-5),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
libsasl2-2 (= 2.1.28+dfsg1-8),
libsasl2-modules-db (= 2.1.28+dfsg1-8),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsharpyuv0 (= 1.4.0-0.1),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssh2-1t64 (= 1.11.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-7),
libstdc++6 (= 14.2.0-7),
libsystemd0 (= 256.7-2),
libtasn1-6 (= 4.19.0-3+b2),
libtcl8.6 (= 8.6.15+dfsg-2),
libtiff6 (= 4.5.1+git230720-5),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtk8.6 (= 8.6.15-1),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-7),
libubsan1 (= 14.2.0-7),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.7-2),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libwebp7 (= 1.4.0-0.1),
libwebpdemux2 (= 1.4.0-0.1),
libwebpmux3 (= 1.4.0-0.1),
libx11-6 (= 2:1.8.7-1+b1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1+b1),
libxcb1 (= 1.17.0-2),
libxdmcp6 (= 1:1.1.2-3+b1),
libxext6 (= 2:1.3.4-1+b2),
libxft2 (= 2.3.6-1+b1),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libxrender1 (= 1:0.9.10-1.1+b1),
libxslt1.1 (= 1.1.35-1.1),
libxss1 (= 1:1.2.3-1+b1),
libxxhash0 (= 0.8.2-2+b1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.11.4-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.40.0-6),
perl-base (= 5.40.0-6),
perl-modules-5.40 (= 5.40.0-6),
po-debconf (= 1.0.21+nmu1),
python-matplotlib-data (= 3.8.3-3+bootstrap1),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-appdirs (= 1.4.4-4),
python3-attr (= 24.2.0-1),
python3-autocommand (= 2.2.2-3),
python3-brotli (= 1.1.0-2+b4),
python3-chardet (= 5.2.0+dfsg-1),
python3-contourpy (= 1.3.0-2),
python3-cycler (= 0.12.1-1),
python3-dateutil (= 2.9.0-3),
python3-debian (= 0.1.49),
python3-decorator (= 5.1.1-5),
python3-dev (= 3.12.6-1+debusine1),
python3-fonttools (= 4.54.1-4),
python3-fs (= 2.4.16-4),
python3-inflect (= 7.3.1-2),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-kiwisolver (= 1.4.7-2),
python3-lxml (= 5.3.0-1),
python3-lz4 (= 4.0.2+dfsg-1+b4),
python3-matplotlib (= 3.8.3-3+bootstrap1),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-mpmath (= 1.3.0-1),
python3-numpy (= 1:1.26.4+ds-11+bootstrap1),
python3-packaging (= 24.1-1),
python3-pil (= 10.4.0-1),
python3-pil.imagetk (= 10.4.0-1),
python3-pkg-resources (= 74.1.2-2),
python3-pyparsing (= 3.1.2-1),
python3-pysam (= 0.22.1+ds-2+debusine1),
python3-scipy (= 1.13.1-5),
python3-setuptools (= 74.1.2-2),
python3-six (= 1.16.0-7),
python3-sympy (= 1.13.3-1),
python3-tk (= 3.12.6-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-tz (= 2024.1-2),
python3-ufolib2 (= 0.16.0+dfsg1-1),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.12-tk (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
python3.13-tk (= 3.13.0-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
swig (= 4.2.1-1),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3),
tk8.6-blt2.5 (= 2.5.3+dfsg-7),
tzdata (= 2024b-3),
unicode-data (= 15.1.0-1),
util-linux (= 2.40.2-9),
x11-common (= 1:7.7+23.1),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=16"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1729759182"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-htseq-dbgsym_2.0.5-2+bd1_arm64.deb
------------------------------------------
new Debian package, version 2.0.
size 3206944 bytes: control archive=760 bytes.
528 bytes, 12 lines control
515 bytes, 5 lines md5sums
Package: python3-htseq-dbgsym
Source: htseq (2.0.5-2)
Version: 2.0.5-2+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3352
Depends: python3-htseq (= 2.0.5-2+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-htseq
Build-Ids: 07c7464adfe251fa5794d0e79d1ce31279a2dc2b 1e20e36df795d026f4afbe731daeb66aa54e763c 33f55b9dec71c5795f8ced9b1100265ee88ee745 4764c18f3efd522645433c22b87b0b757952d7fd
drwxr-xr-x root/root 0 2024-10-24 08:39 ./
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python3-htseq_2.0.5-2+bd1_arm64.deb
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new Debian package, version 2.0.
size 370616 bytes: control archive=2136 bytes.
1046 bytes, 22 lines control
2951 bytes, 33 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
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Package: python3-htseq
Source: htseq (2.0.5-2)
Version: 2.0.5-2+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1965
Depends: python3 (<< 3.14), python3 (>= 3.12~), python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3-pysam, python3:any, libc6 (>= 2.17), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Provides: python-htseq
Section: python
Priority: optional
Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html
Description: Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks
when working with high-throughput genome sequencing reads:
.
* Getting statistical summaries about the base-call quality scores to
study the data quality.
* Calculating a coverage vector and exporting it for visualization in
a genome browser.
* Reading in annotation data from a GFF file.
* Assigning aligned reads from an RNA-Seq experiments to exons and
genes.
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Build Architecture: arm64
Build Type: any
Build-Space: 136000
Build-Time: 191
Distribution: sid
Host Architecture: arm64
Install-Time: 85
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Version: 2.0.5-2+bd1
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